619  cd term3/block1/pr7/
  620  ls
  621  tfm getorf
  622  getorf -minsize 30 -table 0 -find 1 D89965.entret
  623  needle -h
  624  needle P0A7B8.entret D89965.entret
  625  needle P0A7B8.entret d89965.orf
  626  seqret sw:adh*_* adh.fasta
  627  infoseq -only -usa adh.fasta -out usa.txt
  628  grep -f org.txt usa.txt >> newusa.txt
  638  seqret @newusa.txt sequences.fasta
  639  shuffleseq ADH_CUPNH.fasta  
  641  shuffleseq -shuffle 100 ADH_CUPNH.fasta 
  642  water ADH1_RAT.fasta ADH_DROAN.fasta 
  643  water ADH1_RAT.fasta shuff.fasta 
  645  grep '# Score:' n.water | sed 's/# Score: //g' > sc100.txt
  646  grep '# Score:' 100.water | sed 's/# Score: //g' >> sc100.txt
  647  history 50 > history.txt