TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sw|P06129|BTUB_ECOLI Vitamin B12 transporter btuB precursor (Cobalamin receptor) (Outer membrane cobalamin translocator). (614 letters) Database: 3g 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section... 1145 0.0 AE012421 AE008922 |AE012421| Xanthomonas campestris pv. campestr... 238 5e-63 AE008798 AE006468 |AE008798| Salmonella typhimurium LT2, section... 175 3e-44 AE008723 AE006468 |AE008723| Salmonella typhimurium LT2, section... 117 1e-26 AE008826 AE006468 |AE008826| Salmonella typhimurium LT2, section... 114 6e-26 AE012399 AE008922 |AE012399| Xanthomonas campestris pv. campestr... 99 5e-21 AE012417 AE008922 |AE012417| Xanthomonas campestris pv. campestr... 91 1e-18 AE012459 AE008922 |AE012459| Xanthomonas campestris pv. campestr... 88 6e-18 AE012349 AE008922 |AE012349| Xanthomonas campestris pv. campestr... 84 9e-17 AE012448 AE008922 |AE012448| Xanthomonas campestris pv. campestr... 82 5e-16 AE012418 AE008922 |AE012418| Xanthomonas campestris pv. campestr... 82 5e-16 AE012368 AE008922 |AE012368| Xanthomonas campestris pv. campestr... 81 1e-15 AE012378 AE008922 |AE012378| Xanthomonas campestris pv. campestr... 79 3e-15 AE012176 AE008922 |AE012176| Xanthomonas campestris pv. campestr... 75 6e-14 AE008712 AE006468 |AE008712| Salmonella typhimurium LT2, section... 74 1e-13 AE012549 AE008922 |AE012549| Xanthomonas campestris pv. campestr... 73 3e-13 AE012151 AE008922 |AE012151| Xanthomonas campestris pv. campestr... 70 2e-12 AE012419 AE008922 |AE012419| Xanthomonas campestris pv. campestr... 70 2e-12 AE008703 AE006468 |AE008703| Salmonella typhimurium LT2, section... 69 5e-12 AE012390 AE008922 |AE012390| Xanthomonas campestris pv. campestr... 67 2e-11 AE012422 AE008922 |AE012422| Xanthomonas campestris pv. campestr... 66 3e-11 AE008769 AE006468 |AE008769| Salmonella typhimurium LT2, section... 65 8e-11 AE012350 AE008922 |AE012350| Xanthomonas campestris pv. campestr... 63 2e-10 AE012233 AE008922 |AE012233| Xanthomonas campestris pv. campestr... 60 1e-09 AE012104 AE008922 |AE012104| Xanthomonas campestris pv. campestr... 60 2e-09 AE012135 AE008922 |AE012135| Xanthomonas campestris pv. campestr... 59 4e-09 AE012136 AE008922 |AE012136| Xanthomonas campestris pv. campestr... 59 5e-09 AE012292 AE008922 |AE012292| Xanthomonas campestris pv. campestr... 56 3e-08 AE012480 AE008922 |AE012480| Xanthomonas campestris pv. campestr... 55 8e-08 AE012471 AE008922 |AE012471| Xanthomonas campestris pv. campestr... 54 1e-07 AE012148 AE008922 |AE012148| Xanthomonas campestris pv. campestr... 54 1e-07 AE012273 AE008922 |AE012273| Xanthomonas campestris pv. campestr... 54 2e-07 AE012542 AE008922 |AE012542| Xanthomonas campestris pv. campestr... 50 1e-06 AE012527 AE008922 |AE012527| Xanthomonas campestris pv. campestr... 50 1e-06 AE012358 AE008922 |AE012358| Xanthomonas campestris pv. campestr... 50 3e-06 embl|AE006199|AE006199 Pasteurella multocida subsp. multocida st... 49 3e-06 AE012454 AE008922 |AE012454| Xanthomonas campestris pv. campestr... 49 6e-06 AE012238 AE008922 |AE012238| Xanthomonas campestris pv. campestr... 48 7e-06 AE012517 AE008922 |AE012517| Xanthomonas campestris pv. campestr... 47 2e-05 embl|AE006069|AE006069 Pasteurella multocida subsp. multocida st... 47 2e-05 embl|AE006112|AE006112 Pasteurella multocida subsp. multocida st... 46 4e-05 AE012379 AE008922 |AE012379| Xanthomonas campestris pv. campestr... 46 4e-05 AE012484 AE008922 |AE012484| Xanthomonas campestris pv. campestr... 45 5e-05 AE012098 AE008922 |AE012098| Xanthomonas campestris pv. campestr... 45 8e-05 AE012225 AE008922 |AE012225| Xanthomonas campestris pv. campestr... 44 1e-04 AE008752 AE006468 |AE008752| Salmonella typhimurium LT2, section... 44 1e-04 AE012416 AE008922 |AE012416| Xanthomonas campestris pv. campestr... 43 2e-04 embl|AE006179|AE006179 Pasteurella multocida subsp. multocida st... 43 3e-04 AE012310 AE008922 |AE012310| Xanthomonas campestris pv. campestr... 42 7e-04 AE012200 AE008922 |AE012200| Xanthomonas campestris pv. campestr... 40 0.002 embl|AE006111|AE006111 Pasteurella multocida subsp. multocida st... 40 0.003 AE012438 AE008922 |AE012438| Xanthomonas campestris pv. campestr... 39 0.003 embl|AE006167|AE006167 Pasteurella multocida subsp. multocida st... 39 0.004 embl|AE006149|AE006149 Pasteurella multocida subsp. multocida st... 38 0.008 AE012111 AE008922 |AE012111| Xanthomonas campestris pv. campestr... 37 0.013 AE012492 AE008922 |AE012492| Xanthomonas campestris pv. campestr... 37 0.017 AE012201 AE008922 |AE012201| Xanthomonas campestris pv. campestr... 35 0.065 AE012217 AE008922 |AE012217| Xanthomonas campestris pv. campestr... 35 0.085 AE012277 AE008922 |AE012277| Xanthomonas campestris pv. campestr... 30 2.7 embl|AE006036|AE006036 Pasteurella multocida subsp. multocida st... 29 4.6 AE012444 AE008922 |AE012444| Xanthomonas campestris pv. campestr... 29 4.6 AE012337 AE008922 |AE012337| Xanthomonas campestris pv. campestr... 29 4.6 AE012285 AE008922 |AE012285| Xanthomonas campestris pv. campestr... 29 4.6 AE012127 AE008922 |AE012127| Xanthomonas campestris pv. campestr... 29 4.6 AE012290 AE008922 |AE012290| Xanthomonas campestris pv. campestr... 28 7.9 AE012121 AE008922 |AE012121| Xanthomonas campestris pv. campestr... 28 7.9 >AE008893 AE006468 |AE008893| Salmonella typhimurium LT2, section 197 of 220 of the complete genome. Length = 20178 Score = 1145 bits (2963), Expect = 0.0 Identities = 536/614 (87%), Positives = 582/614 (94%) Frame = +1 Query: 1 MIKKASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQST 60 MIKKA+LLTA SVTAFSAWAQDTSPDTLVVTANRF+QPRS VLAP T+VTRQDI+RWQST Sbjct: 5239 MIKKATLLTAFSVTAFSAWAQDTSPDTLVVTANRFQQPRSAVLAPVTIVTRQDIERWQST 5418 Query: 61 SVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFP 120 SVNDVLRRLPGVDI Q+GG+GQ SSIFIRGTN+SHVLVLIDGVRLNLAGVSGSADLSQFP Sbjct: 5419 SVNDVLRRLPGVDIAQSGGAGQNSSIFIRGTNSSHVLVLIDGVRLNLAGVSGSADLSQFP 5598 Query: 121 IALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQL 180 ++LVQR+EYIRGPRSA+YGSDAIGGVVNIITTRD PGTE++AGWGSNSYQNYD+STQQQL Sbjct: 5599 VSLVQRIEYIRGPRSAIYGSDAIGGVVNIITTRDNPGTELTAGWGSNSYQNYDISTQQQL 5778 Query: 181 GDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRG 240 G+ TR TL+GDY +T G+DVVA G TG QAQ D DGFLSKTLYGALEH F+D WSGFVRG Sbjct: 5779 GENTRATLIGDYEYTKGFDVVAKGGTGMQAQPDRDGFLSKTLYGALEHTFSDRWSGFVRG 5958 Query: 241 YGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPH 300 YGYDNRT+YDAYYSPGSPL+DTRKLYSQSWDAGL +NGE I+SQL++SYSHSKDYNYDPH Sbjct: 5959 YGYDNRTDYDAYYSPGSPLIDTRKLYSQSWDAGLHFNGERIQSQLVSSYSHSKDYNYDPH 6138 Query: 301 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGI 360 YGRYD+SATLDEMKQY VQW N+V+VGHG++GAGVDWQKQTTTPGTGYV +GYDQRNTG+ Sbjct: 6139 YGRYDTSATLDEMKQYNVQWTNSVVVGHGNVGAGVDWQKQTTTPGTGYVPEGYDQRNTGV 6318 Query: 361 YLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQ 420 YLTGLQQ+GDFT E AARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQ Sbjct: 6319 YLTGLQQLGDFTLEAAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQ 6498 Query: 421 LYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKAR 480 LYG+YGNPNL+PEKSKQWEGAFEGLTAGV+WRISGYRND++D+IDYDDH KYYNEGKAR Sbjct: 6499 LYGYYGNPNLNPEKSKQWEGAFEGLTAGVSWRISGYRNDINDMIDYDDHLQKYYNEGKAR 6678 Query: 481 IKGVEATANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITY 540 IKG+EATANFDTGPLTHTVSYDYVDARNAITDTPL RR+KQ KYQLDW +YDFDWG+TY Sbjct: 6679 IKGIEATANFDTGPLTHTVSYDYVDARNAITDTPLPRRSKQMAKYQLDWDVYDFDWGMTY 6858 Query: 541 QYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDYETVYGYQ 600 QYLG+RYD DYS+YPY+TVKMGGVSLWDL VAYPVTSHLTVRGKIANLFDKDYETVYGYQ Sbjct: 6859 QYLGSRYDSDYSAYPYRTVKMGGVSLWDLTVAYPVTSHLTVRGKIANLFDKDYETVYGYQ 7038 Query: 601 TAGREYTLSGSYTF 614 TAGREYTLSGSYTF Sbjct: 7039 TAGREYTLSGSYTF 7080 >AE012421 AE008922 |AE012421| Xanthomonas campestris pv. campestris str. ATCC 33913, section 329 of 460 of the complete genome. Length = 12226 Score = 238 bits (606), Expect = 5e-63 Identities = 194/631 (30%), Positives = 289/631 (45%), Gaps = 24/631 (3%) Frame = -2 Query: 6 SLLTACSVTAFSAWAQDTSP---DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSV 62 ++L C +A AQ + D +VVTA R Q + LAP TV+ R I+R Q S+ Sbjct: 6117 AVLAVCLSMCVAALAQAEAAVDLDQVVVTATRTAQTQDQTLAPVTVIDRAQIERRQINSL 5938 Query: 63 NDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIA 122 D+LR GV + NGG G+ +S+F+RGT A H++VL+DGVR+ A +G A L P Sbjct: 5937 QDLLRGEAGVSLANNGGPGKQTSLFLRGTEADHLVVLVDGVRVGSA-TAGGAALQDIPFE 5761 Query: 123 LVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPG--TEISAGWGSNSYQNYDVS----T 176 ++R+E +RGP S++YGS+A+GGV+ + T R E A GS++ + Y + Sbjct: 5760 QIERIEIVRGPFSSLYGSEALGGVIQLFTRRPEGRFVPTFGAAAGSDNARRYSAGVAGRS 5581 Query: 177 QQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQA-QTDNDGFLSKTLYGALEHNFTDAWS 235 LG++ + + H + AY +T + + D DG+ + +L F W Sbjct: 5580 DGDLGERGGWYSV-NAVHDETDGINAYLDTRSSSYDPDRDGYRNDSLNVQGGWRFNRQWD 5404 Query: 236 GFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRY---NGELIKSQLITSYSHS 292 V +R YD G + K Q+ +RY + + + L +S S Sbjct: 5403 ADVHALRAQSRNEYDGSAFGG----NLSKGVQQAVGGRVRYAPTDAFKLTASLGSSVDFS 5236 Query: 293 KDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDG 352 Y + YD+ KQ ++Q +V G G + G DWQ+ Y D Sbjct: 5235 DAYFDGTYVSTYDT-----RRKQGSLQ--ADVDAGPGLLTVGFDWQRDAIASSDTYDADS 5077 Query: 353 YDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTS 412 R + Q G + + + R +DNSQFG T GW+ R ASYGT+ Sbjct: 5076 RIDR--AAFAQWQQSFGTQSLQASLRRNDNSQFGGKTTGSLLWGWDIAAHLRVTASYGTA 4903 Query: 413 YKAPNLGQL-YGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYD---- 467 +KAP +L Y YGNP L PE S+ E G W +S ++ + DLI YD Sbjct: 4902 FKAPTFNELYYPDYGNPLLGPETSRSAELGLRGNYDWGTWTLSAFQTRIDDLIAYDAGLV 4723 Query: 468 DHTLKY---YNEGKARIKGVEATANFDTGPLTHTVSYDYVDAR---NAITDTPLLRRAKQ 521 D T + N +ARI+GVEA + + T + ++D R + L RRA+Q Sbjct: 4722 DATHPFGQPNNIDQARIRGVEAGYDTELAGWTVRSALTWLDPRADGDVNHGNWLPRRARQ 4543 Query: 522 QVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTV 581 + D + G + G RYD +S ++ G L DL V+Y V + V Sbjct: 4542 SGRIDADRSFGAYGVGASLFGAGKRYDDLANS-----DRLAGYGLLDLRVSYAVNADWKV 4378 Query: 582 RGKIANLFDKDYETVYGYQTAGREYTLSGSY 612 N+FD+ YET Y GR Y L+ Y Sbjct: 4377 SLSANNVFDRQYETARWYNQPGRAYLLTLRY 4285 >AE008798 AE006468 |AE008798| Salmonella typhimurium LT2, section 102 of 220 of the complete genome. Length = 20178 Score = 175 bits (444), Expect = 3e-44 Identities = 179/697 (25%), Positives = 292/697 (41%), Gaps = 93/697 (13%) Frame = -3 Query: 11 CSVTAFSAWAQDTSPD---TLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLR 67 C AW + D T+VVTA+ EQ A +V+T+QD+ R ++ DVL+ Sbjct: 7258 CMSAVTLAWPVAAATDDGETMVVTASAIEQNLKDAPASISVITQQDLQRRPVQNLKDVLK 7079 Query: 68 RLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGV---SGSADLSQFPIALV 124 +PGV +T G + + + IRG ++S+ L+LIDG R+N DL+ P+ + Sbjct: 7078 EVPGVQLTNEGDNRK--GVSIRGLDSSYTLILIDGKRVNSRNAVFRHNDFDLNWIPVDAI 6905 Query: 125 QRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKT 184 +R+E +RGP S++YGSDA+GGVVNIIT + I W + + + + GD Sbjct: 6904 ERIEVVRGPMSSLYGSDALGGVVNIITKK------IGQKWHGSVTVDSTIQEHRDRGDTY 6743 Query: 185 R---------------VTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHN 229 + G A + + T T +GF S+ + N Sbjct: 6742 NGQFFTSGPLIDGVLGMKAYGSLAKREKDEQQSSATTATGETPRIEGFTSR------DGN 6581 Query: 230 FTDAWS-----GFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQS--------WDAG--- 273 AW+ GYG+D + S LD +L Q+ WD G Sbjct: 6580 VEFAWTPNENHDVTAGYGFDRQDR-------DSDSLDKNRLERQNYALSHNGRWDLGNSE 6422 Query: 274 LRYNGELIK------SQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVG 327 L++ GE ++ S ITS S+S D Y A++++ + +W ++ + Sbjct: 6421 LKFYGEKVENKNPGNSSPITSESNSIDGKY------VLPLASVNQFLTFGGEWRHDKLSD 6260 Query: 328 HGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGR 387 ++ G K + + ++ED + TG+ R DD+ +G Sbjct: 6259 AVNLTGGSS-TKTSASQYALFLEDEWRIFEPLALTTGI------------RMDDHETYGD 6119 Query: 388 HGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQL------------YGFYGNPNLDPEKS 435 H + + + + + T++KAP+L QL G+P+L PE S Sbjct: 6118 HWSPRAYLVYNATDTLTVKGGWATAFKAPSLLQLSPDWATNSCRGGCRIVGSPDLKPETS 5939 Query: 436 KQWE-GAF----EGLTAGVNWRISGYRNDV------------------SDLIDYDDHT-- 470 + WE G + EG+ GV ++ +RNDV S+ + ++ ++ Sbjct: 5938 ESWELGLYYRGEEGILEGVEASVTTFRNDVDNRISISRTPDVNAAPGYSNFVGFETNSRG 5759 Query: 471 -----LKYYNEGKARIKGVEATANFDTGPLTH-TVSYDYVDARNAIT--DTPLLRRAKQQ 522 +YYN KARI+GVE +++Y Y D R+ + PL Sbjct: 5758 QRVPVFRYYNVNKARIQGVETELKVPFNEAWKLSLNYTYNDGRDVSNGGNKPLSDLPFHT 5579 Query: 523 VKYQLDW---QLYDFDWGITYQYLG-TRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSH 578 LDW QL D+ + ++ Y G R D + P GG +WD A+ T + Sbjct: 5578 ANGTLDWKPVQLEDWSFYVSGNYTGRKRADSATAKTP------GGYVVWDTGAAWQATKN 5417 Query: 579 LTVRGKIANLFDKDYE-TVYGYQTAGREYTLSGSYTF 614 + +R + N+ DKD + YGY GR Y ++ Y F Sbjct: 5416 VKLRAGVLNVGDKDLKRDDYGYTEDGRRYFMAVDYRF 5306 >AE008723 AE006468 |AE008723| Salmonella typhimurium LT2, section 31 of 220 of the complete genome. Length = 22294 Score = 117 bits (292), Expect = 1e-26 Identities = 183/724 (25%), Positives = 292/724 (40%), Gaps = 132/724 (18%) Frame = -3 Query: 23 TSPDTLVVTANRFEQPRSTVLAP-TTVVTRQDIDRWQ-STSVNDVLRRLPGVDITQNGGS 80 T+ DT+VVTA + + AP + +T +I + + V++++R +PGV++T N S Sbjct: 4799 TNEDTIVVTA-----AQQNLQAPGVSTITADEIRKNPPARDVSEIIRTMPGVNLTGNSTS 4635 Query: 81 GQLSS---IFIRGTNASHVLVLIDG--------VRLNLAGVSGS-ADLSQFPIALVQRVE 128 GQ + I IRG + L+LIDG VRL G + D + P +++R+E Sbjct: 4634 GQRGNNRQIDIRGMGPENTLILIDGKPVTSRNSVRLGWRGERDTRGDTAWVPPEMIERIE 4455 Query: 129 YIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTL 188 +RGP +A YG+ A GGVVNIIT + G+E W N+Y N + +T +L Sbjct: 4454 VLRGPAAARYGNGAAGGVVNIITKKG--GSEWHGSW--NTYFNAPEHKDEGATKRTNFSL 4287 Query: 189 LGDYAHTHGYDVVAYGN-------------------TGTQAQT---DNDGFLSKTLYGAL 226 G + + YGN TG+ A T +G ++K + G + Sbjct: 4286 NGPLGGDFSFRL--YGNLDKTQADARNINQGHQSERTGSYADTLPAGREGVINKDINGVV 4113 Query: 227 EHNFTDAWS-----GFVR------GYGYDNRTNY---DAYYSPGSPLLDTRKLYSQSWDA 272 +F S G+ R G + TN D Y + L R+ YS +W+ Sbjct: 4112 RWDFAPLQSLELEAGYSRQGNLYAGDTQNTNTNQLVKDNYGKETNRLY--RQNYSLTWNG 3939 Query: 273 GLRYNGELIKSQLITSYSHSKDYN------------YDPHYGRYDSSATLDEMKQYTVQW 320 G +N + S + Y H+++ +DP + + A L+++ ++ Sbjct: 3938 G--WNNGVTTSNWV-QYEHTRNSRMPEGLAGGTEGIFDPKASQKYADADLNDVTLHSEVS 3768 Query: 321 ANNVIVGHGSIGAGVDWQKQ-------TTTPGTGYVEDGYDQRNTGIY----LTGLQQVG 369 ++ + ++ G +W +Q + G GY N Y + L Sbjct: 3767 LPFDLLVNQNLTLGTEWAQQRMKDQLSNSQTFMGGNIPGYSSTNRSPYSKAEIFSLFAEN 3588 Query: 370 DFTFEGAARSDDNSQFGRHG----TWQTSAGWEFIEGYRFIASYG--TSYKAPNLGQ--- 420 + + +F H W S G F G +YKAP+L Q Sbjct: 3587 NMELTDSTMLTPGLRFDHHSIVGDNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNP 3408 Query: 421 ---LY----GFY-------------GNPNLDPEKSKQWEGAFE----GLTAGVNWRISGY 456 LY G Y GN +L E S E E G AGV W + Sbjct: 3407 NYILYSKGQGCYATGAGTGIGCYMMGNDDLKAETSINKEIGLEFKRDGWLAGVTW----F 3240 Query: 457 RNDVSDLIDYDDHTLKYYNEG-----------KARIKGVEATANF---DTGPLTHTVSYD 502 RND + I+ L+ N G KA ++G+E T N DT T+ V+Y Sbjct: 3239 RNDYRNKIEAGTVPLQRINNGKTDVYQWENVPKAVVEGLEGTLNVPVSDTVNWTNNVTY- 3063 Query: 503 YVDARNAITDTPLLRRAKQQVKYQLDWQL-YDFDWGITYQYLGTRYDK--DYSSYPYQTV 559 + ++N T L + + L WQ+ D T+ + G + K DY P Sbjct: 3062 MLQSKNKETGERLSIIPQYTLNSTLSWQVRQDVSLQSTFTWYGKQEPKKYDYQGNPVTGT 2883 Query: 560 KMGGVSLWD---LAVAYPVTSHLTVRGKIANLFDK------DYETVYGYQTAGREYTLSG 610 VS + L+ + VT ++++ G + NLFDK + +TV QT G +G Sbjct: 2882 DKQAVSPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWREGNAQTVRDTQT-GAYMAGAG 2706 Query: 611 SYTF 614 +YT+ Sbjct: 2705 AYTY 2694 >AE008826 AE006468 |AE008826| Salmonella typhimurium LT2, section 130 of 220 of the complete genome. Length = 20513 Score = 114 bits (286), Expect = 6e-26 Identities = 180/716 (25%), Positives = 277/716 (38%), Gaps = 126/716 (17%) Frame = -1 Query: 17 SAWAQDTSPDTLVV--TANRFEQPRSTVLAPTTVVTRQDIDRWQSTS-VNDVLRRLPGVD 73 +A + D + +T+VV TA + + + V +++TR DI + + + D++R++PGV+ Sbjct: 19466 AAESTDDNGETMVVESTAEQVLKQQPGV----SIITRDDIQKNPPVNDLADIIRKMPGVN 19299 Query: 74 ITQNGGSGQLSS---IFIRGTNASHVLVLIDGV--------RLNLAGVSGS-ADLSQFPI 121 +T N SG + I IRG + LVLIDGV R + G + D + P Sbjct: 19298 LTGNSASGTRGNNRQIDIRGMGPENTLVLIDGVPVTSRNSVRYSWRGERDTRGDTNWVPP 19119 Query: 122 ALVQRVEYIRGPRSAVYGSDAIGGVVNIIT---TRDEPGT-------EISAGWGSNSYQN 171 +V+R+E IRGP A YGS A GGVVNIIT T D G+ S+ G N Sbjct: 19118 EMVERIEVIRGPAVARYGSGAAGGVVNIITKRPTNDWHGSLSLYTNQPESSKEGDTRRGN 18939 Query: 172 YDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFT 231 + +S GD + L G+ T + GT+ +G +K + T Sbjct: 18938 FSLS-GPLAGDTLTMRLYGNLNRTDADSWDINSSAGTKNAAGREGVTNKDINSVFSWKMT 18762 Query: 232 -----DAWSGFVRG---YGYD--NRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELI 281 D +G+ R Y D N T+ S +T +LY Q++ GL +NG Sbjct: 18761 PQQILDFEAGYSRQGNIYAGDTQNSTSNAVTKSLAQSGRETNRLYRQNY--GLTHNGIWD 18588 Query: 282 KSQLITSYSHSKDYNYDPHYG---------RYDSSATLDEMKQYTVQWANNVIVGHGSIG 332 Q + + K N + G D + T + + Y G + Sbjct: 18587 WGQSRLGFYYEKTDNTRMNEGLSGGGEGRITNDQTFTTNRLTSYRTS---------GEVN 18435 Query: 333 AGVDWQ-KQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDN----SQFGR 387 V W +QT T G + D + ++ + A RS N S Sbjct: 18434 VPVIWLFEQTLTVGAEWNRDELNDPSSTSLTVKDSNIAGIPGSAANRSSKNKSEISALYV 18255 Query: 388 HGTWQTSAGWEFIEGYRF--------------------------IASYGTSYKAPNLGQ- 420 + AG I G RF A ++KAPNL Q Sbjct: 18254 EDNIEPMAGTNIIPGLRFDYLSESGSNFSPSLNLSQELGEYVKVKAGIARAFKAPNLYQT 18075 Query: 421 -----LY-------------GFY--GNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDV 460 LY G Y GN NLDPE S E E + ++ +RND Sbjct: 18074 SEGYLLYSKGNGCPKDITSGGCYLVGNKNLDPEISINKEIGLEFTVDDYHASVTYFRNDY 17895 Query: 461 SDLIDYDD----------HTLKYYNEGKARIKGVEAT---------ANFDTGPLTHTVSY 501 + I D + L++ N GKA I+G+EA+ N++T T+ ++ Sbjct: 17894 QNKIVAGDQIIGRSASGAYVLQWQNGGKALIEGIEASMAVPLMPDRLNWNTN-ATYMIAS 17718 Query: 502 DYVDARNAITDTPLLRRAKQQVKYQLDWQLYD-FDWGITYQYLGTRYDKDYSSYPYQTVK 560 + D N ++ P K V LDW + + + G + + ++ + K Sbjct: 17717 EQKDTGNPLSIIP-----KYTVNTFLDWTITSALSANVNWTLYGKQKPRTHAESRSEETK 17553 Query: 561 ------MGGVSLWDLAVAYPVTSHLTVRGKIANLFDKD-YETVYG---YQTAGREY 606 +G SL V Y + +L + I+N+FDK Y + G Y GR Y Sbjct: 17552 GLSGKALGAYSLVGANVNYDINKNLRLNVGISNIFDKQIYRSAEGANTYNEPGRAY 17385 >AE012399 AE008922 |AE012399| Xanthomonas campestris pv. campestris str. ATCC 33913, section 307 of 460 of the complete genome. Length = 12752 Score = 98.6 bits (244), Expect = 5e-21 Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 4/175 (2%) Frame = +1 Query: 14 TAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPG-- 71 TA + A T+ D + VT +R + P +TRQDID+ TSV DVL+R+ Sbjct: 9976 TAIAQEAGTTNLDKIEVTGSRIKSADIETSQPVLTLTRQDIDKQGVTSVADVLQRVAANG 10155 Query: 72 --VDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEY 129 ++ T N G S I +R ++ LVL++G R G+ GS DL+ P A+V+R++ Sbjct: 10156 AALNRTFNNGGDGSSGIALRNLGSARTLVLVNGRRWT-TGLDGSVDLNTIPTAMVERIDI 10332 Query: 130 IRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKT 184 ++ S +YGSDAI GVVNIIT ++ G E G N Q D Q+Q D T Sbjct: 10333 LKDGASTIYGSDAIAGVVNIITRKNFDGAEA----GVNVGQYSDGDGQRQAYDFT 10485 >AE012417 AE008922 |AE012417| Xanthomonas campestris pv. campestris str. ATCC 33913, section 325 of 460 of the complete genome. Length = 10774 Score = 90.9 bits (224), Expect = 1e-18 Identities = 124/522 (23%), Positives = 200/522 (38%), Gaps = 97/522 (18%) Frame = +2 Query: 5 ASLLTACSVTAFSAWAQDTSPDTLVVTANRF-EQPRSTVLAPTTVVTRQDIDRWQSTSVN 63 A+LL + ++ + A + DT++VT R ++ + +P +++ + + ++ + Sbjct: 8294 AALLASPALAQNAPAATANTLDTVIVTGTRVSDRTVAESQSPIDIISAESLQATGTSELA 8473 Query: 64 DVLRR-LPGVDITQ---NGGSGQLSSIFIRGTNASHVLVLIDGVR------LNLAGVSG- 112 L R LP ++ + + G+ + +RG + VLVL++G R LNL G G Sbjct: 8474 TALARALPSLNFPRPALSDGTSAIRPAQLRGLSPDQVLVLVNGKRRHTSSLLNLNGTIGR 8653 Query: 113 ---SADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSY 169 + DL+ P+A + RVE +R SA YGSDAI GVVNI+ E G + AG+G Y Sbjct: 8654 GAAAVDLNTIPVAAIARVEVLRDGASAQYGSDAIAGVVNIVLKGAEKGGSLQAGFG--QY 8827 Query: 170 QNYDVSTQQQLGDKTRVTLLGDYAHTH------------------GYDVVAYGNTGTQAQ 211 D S + GD T V GD H G + G +A Sbjct: 8828 SAGDGSNYELSGD-TGVAYGGDRGWLHVAAQLNQQDPTDRARAYAGAPSASQPAVGQKAF 9004 Query: 212 TDNDGFL-SKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDA-----YYSPGSPLLDTRKL 265 D + ++ L E NF+D+ + GY + +N D Y +PGS + + Sbjct: 9005 KIGDPDVNAQALSANTEFNFSDS----ITGYAFATASNRDITSFAFYRAPGSTAQNILSI 9172 Query: 266 YSQ---------------------------SWDAGLRYNGELI----KSQLITSYSHSKD 294 Y Q WDA Y I ++ L S + Sbjct: 9173 YPQGFLPEIQTYAKDRSVVAGVRGSTASGWDWDASYNYGYNKIDFHTRNTLNVSLGPTSP 9352 Query: 295 YN-YDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGT------- 346 + YD + LD + + A V V G+ W + G+ Sbjct: 9353 TSFYDGALETTQNIVNLDVKRGFDWGLAYPVTVAFGAEYRNEKWNQSPGEVGSYFQSGTL 9532 Query: 347 --------GYVEDGYDQRNTGIYLTGLQQVGDFTFEGAA----RSDDNSQFGRHGTWQTS 394 G+ Q + Y DFT + +A R +D S FG + + S Sbjct: 9533 AGGAQGFGGFAPSVSGQYSRDSYALYADIEADFTDKFSAGLAGRYEDYSDFGSQASGKLS 9712 Query: 395 AGWEFIEGYRFIASYGTSYKAPNLGQLY-------GFYGNPN 429 A + F + + + ++AP+L Q Y GNPN Sbjct: 9713 ARYAFTDKVALRGTVSSGFRAPSLAQQYFQSTSTTFLAGNPN 9838 >AE012459 AE008922 |AE012459| Xanthomonas campestris pv. campestris str. ATCC 33913, section 367 of 460 of the complete genome. Length = 12023 Score = 88.2 bits (217), Expect = 6e-18 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 27/185 (14%) Frame = -2 Query: 8 LTACSVTAFSAWAQDTSP-------DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQST 60 L+ C + + AWAQ P D++ VT R + P + R DI+R T Sbjct: 5323 LSLCLIPSL-AWAQQPEPAPSTRTLDSVQVTGTRIKTAELQGQVPIQTLNRADIERTGLT 5147 Query: 61 SVNDVLRRLPGVDITQNG-------------GSGQ---LSSIFIRGTNASHVLVLIDGVR 104 S+ +VL+ L N GSG + + +R + VLVL+DG+R Sbjct: 5146 SIGEVLQELTASGSALNAKFNSSGNFGFPPDGSGVGAGSAQVDLRHLGSKRVLVLVDGIR 4967 Query: 105 L----NLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEI 160 + +GV S DL+ P+A+V+R+E + S++YGSDAI GVVNIIT R G ++ Sbjct: 4966 WVNESSASGVGSSTDLNTIPLAIVERIEVLEDGASSLYGSDAIAGVVNIITRRTFDGAQV 4787 Query: 161 SAGWG 165 + +G Sbjct: 4786 TLNYG 4772 Score = 35.0 bits (79), Expect = 0.065 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = -2 Query: 343 TPGTGYVEDGYDQRNTGIYLTGLQQVGD-FTFEGAARSDDNSQFGRHGTWQTSAGWEFIE 401 T G+ V + Y + N I+ +GD A R D S FG T + W+ + Sbjct: 3679 TSGSYDVNEAYLELNIPIFANST--LGDKLDLNIAGRYSDYSTFGGEFTPKYGLRWQVSD 3506 Query: 402 GYRFIASYGTSYKAPNLGQLYG 423 + SY ++AP +G+L+G Sbjct: 3505 EFVLRTSYAEGFRAPTIGELFG 3440 >AE012349 AE008922 |AE012349| Xanthomonas campestris pv. campestris str. ATCC 33913, section 257 of 460 of the complete genome. Length = 10575 Score = 84.3 bits (207), Expect = 9e-17 Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 6/148 (4%) Frame = -3 Query: 26 DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGV------DITQNGG 79 D++VVT +R + + P V+++ I +V D+L+ LP + T NGG Sbjct: 5617 DSVVVTGSRLRRVDTETANPVVTVSQEQIAATGKATVGDLLQELPSIAGNATNPYTNNGG 5438 Query: 80 SGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYG 139 S++ +RG LVL++G+RL D++ P ++++R+E + SAVYG Sbjct: 5437 GTGASAVSLRGLGDKRTLVLVNGIRL------AYNDVNAIPASMIERIEVLSDGASAVYG 5276 Query: 140 SDAIGGVVNIITTRDEPGTEISAGWGSN 167 SDAIGGVVN I G + S+ +G++ Sbjct: 5275 SDAIGGVVNFILRTRFDGVQFSSDFGTS 5192 >AE012448 AE008922 |AE012448| Xanthomonas campestris pv. campestris str. ATCC 33913, section 356 of 460 of the complete genome. Length = 13170 Score = 82.0 bits (201), Expect = 5e-16 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%) Frame = -3 Query: 15 AFSAWAQD------TSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRR 68 AF+A AQ+ T+ D + +T +R P VT+QDI + SV D+L+ Sbjct: 12070 AFAANAQEQSAPSTTTLDRIEITGSRIRSVDVETAQPVFTVTQQDIQKSGLVSVGDILQN 11891 Query: 69 LP----------GVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQ 118 L V + GQ +++ G N + LVL++G R + +SG D+S Sbjct: 11890 LSIAGTQTYSKAAVLTSDPEQGGQYVNLYNLGENRT--LVLVNGKRWT-SSLSGLTDMST 11720 Query: 119 FPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSN 167 P +L++R+E ++ SA+YGSDA+ GVVNII ++ G E SA +G N Sbjct: 11719 IPSSLIERIEVLKDGASAIYGSDAVAGVVNIILRQNYDGAEASAYFGQN 11573 Score = 37.0 bits (84), Expect = 0.017 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Frame = -3 Query: 333 AGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTG-------------LQQVGDFTFEGAARS 379 +G D+ Q ++ GY D Q G Y T L + +F+ AAR Sbjct: 10546 SGYDYPDQLSS--AGYTTDLAAQATEGRYQTNEAYLELLIPVLKDLPGAKELSFDVAARY 10373 Query: 380 DDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYG 423 + S+FG + S W+ I+ +YGT ++AP L +G Sbjct: 10372 SNYSRFGDTTNSKFSFTWKPIDDLLVRGTYGTGFRAPTLSDTFG 10241 >AE012418 AE008922 |AE012418| Xanthomonas campestris pv. campestris str. ATCC 33913, section 326 of 460 of the complete genome. Length = 10118 Score = 82.0 bits (201), Expect = 5e-16 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 24/289 (8%) Frame = +3 Query: 6 SLLTACSVTAFSAWAQDTSP-----DTLVVTANRF-EQPRSTVLAPTTVVTRQDIDRWQS 59 +++ A S +A +A AQ +P DTL+VT R ++ + +P +++ Q ++ + Sbjct: 840 AVVLALSFSASTAVAQSQAPTQKTLDTLIVTGTRVADRTVAESASPIDIISPQALESTGT 1019 Query: 60 TSVNDVLRR-LPGVDITQ---NGGSGQLSSIFIRGTNASHVLVLIDGVR------LNLAG 109 T + L R +P ++ + + GS + +RG + VLVL++G R +NL Sbjct: 1020 TELATALSRAIPSLNFPRPAISDGSDAVRPAQLRGLSPDQVLVLVNGKRYHSTALINLND 1199 Query: 110 VSGS----ADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWG 165 G ADL+ PIA V+R+E +R SA YGSDAI GV+NI+ G ++ +G Sbjct: 1200 TQGRGSSPADLNTIPIAAVERIEVLRDGASAQYGSDAIAGVINIVLKGSGEGGSVNGRYG 1379 Query: 166 SNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTL--Y 223 S GD + L GD G+ G AQ + ++ L Sbjct: 1380 KYS-----------AGDGEQYQLSGD----AGFSFAGTGKVHLAAQAGHSDQTNRALPFQ 1514 Query: 224 GALEHNFTDAW--SGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSW 270 G +E + D G V G + T+Y +YS G ++ R++ S + Sbjct: 1515 GRVEQRYGDPEIDQGAVSFNGEYSPTDYLTFYSFG--MVSRREVLSNGY 1655 Score = 70.1 bits (170), Expect = 2e-12 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 19/164 (11%) Frame = +3 Query: 6 SLLTACSVTAFSAWAQDTSP----DTLVVTANRF-EQPRSTVLAPTTVVTRQDIDRWQST 60 S+ A + A +A AQ P DTL+VT R ++ + +P ++T Q + +T Sbjct: 3561 SIALAANAFAGTAQAQQPPPQKTLDTLIVTGTRVADRTVAESESPIDIITEQSLQATGAT 3740 Query: 61 SVNDVLRRL-PGVDITQ---NGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGV------ 110 + L +L P ++ + + G+ +RG + VLVL+DG R + + + Sbjct: 3741 DIATALGKLLPSLNFPRPAISDGNDAARPATLRGLSPDAVLVLVDGKRYHTSALINYNPY 3920 Query: 111 ----SGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNII 150 S ADL+ P++ V R+E +R SA YGSDAI GVVNI+ Sbjct: 3921 VGRGSAPADLNSLPMSAVARIEVLRDGASAQYGSDAIAGVVNIV 4052 >AE012368 AE008922 |AE012368| Xanthomonas campestris pv. campestris str. ATCC 33913, section 276 of 460 of the complete genome. Length = 11627 Score = 80.9 bits (198), Expect = 1e-15 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 16/187 (8%) Frame = +2 Query: 5 ASLLTACSVTAFSAWAQD---TSPDT-----LVVTANRFEQPRSTVLAPTTVVTRQDIDR 56 A+LL A A AQ +PDT + VT +R + +P T +T ++I Sbjct: 8471 AALLAVLVAPAGHALAQSENGVAPDTTDLDKVTVTGSRIARTGFVTPSPVTAITAEEIRA 8650 Query: 57 WQSTSVNDVLRRLPGV-------DITQNGGSGQLSSIFIRGTNASHVLVLIDGVR-LNLA 108 +T+++D++ R+P + + T+ G+ L + +RG LVL++G R + + Sbjct: 8651 TGATTISDLMARMPALAPSYTLGNSTRFIGTAGLGLLDLRGMGVDRTLVLVNGRRHVGSS 8830 Query: 109 GVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNS 168 S + D++ P+ V+RVE I G SAVYG+DA+ GVVN I + G E A G Sbjct: 8831 PGSTAVDVNTIPVEWVERVEVITGGASAVYGADAVAGVVNFILKKSFTGFETRAQTGLAD 9010 Query: 169 YQNYDVS 175 NY+ S Sbjct: 9011 EGNYNRS 9031 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/61 (31%), Positives = 26/61 (42%) Frame = +2 Query: 362 LTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQL 421 L GL V + A R D S G TW W I R + + +AP++G+L Sbjct: 10256 LAGLPGVDRLALDLAGRYSDYSSIGSTKTWNIGLDWTIIPSLRLRGTLAQAVRAPSIGEL 10435 Query: 422 Y 422 Y Sbjct: 10436 Y 10438 >AE012378 AE008922 |AE012378| Xanthomonas campestris pv. campestris str. ATCC 33913, section 286 of 460 of the complete genome. Length = 10947 Score = 79.3 bits (194), Expect = 3e-15 Identities = 129/541 (23%), Positives = 198/541 (36%), Gaps = 59/541 (10%) Frame = +3 Query: 26 DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSS 85 D +VVTA+ + P V+ + +D +++S+ + + LPGV + N G G + Sbjct: 846 DKVVVTASPLRDAAGELSRPVEVLAGERLDEVRASSLGETVASLPGVQ-SSNFGPG-VGR 1019 Query: 86 IFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGG 145 IRG + V VL DG+ L ++E ++GP + +YGS AIGG Sbjct: 1020 PIIRGLDGPRVAVLRDGLSTQDVSTVSQDHSPAIEPFLANQIEVLKGPSTLLYGSGAIGG 1199 Query: 146 VVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGN 205 VVN++ R T + G+ + +D + D RV D + G + A G Sbjct: 1200 VVNVVDGRIAE-TPVD-GFSGRAEVRFDGGDKDGNTDMFRV----DAGNGSGLSIHADGV 1361 Query: 206 TGTQAQTDN------DGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPL 259 Q D + FL + G++ + W GFV R NY PG Sbjct: 1362 YRNQNDYDTPQGRQANSFLDSKV-GSIGASLAGDW-GFVGLSASRFRDNYGNPGEPGDLS 1535 Query: 260 LDTR----KLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQ 315 + R KL +D +K L + Y +G D + T E + Sbjct: 1536 IGERGVSLKLQQDRYD---------LKGGLTDPWGDGSALRYS--FGHTDYAHTEFEGAE 1682 Query: 316 YTVQWANNVIVG--HGSIGAGVDWQ-------KQTTTPGTGYVEDGY----DQRNTGIYL 362 + G S G WQ TT G E+ + D R+ G++ Sbjct: 1683 VGTVFTKRANEGRVEASFTFGGGWQTAFGLQGSDTTFQAVG--EESFVPKTDTRSLGLFG 1856 Query: 363 TGLQQVGDFTFEGAARSDDNSQFGRHG--------TWQTSAGWEFIEGYRFIASYGTSYK 414 T E AR D G ++ SAG+ F E +R A+ + + Sbjct: 1857 VARNSWDRVTAEVGARVDKVKYSTDIGVDRDFTPTSFSASAGFRFNEQWRLTANLDHAER 2036 Query: 415 APNLGQLYG----------FYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLI 464 AP +L+ G+ NL EK+ Q E V+ +I+ Y N +D + Sbjct: 2037 APAEEELFANGPHIATLAFEIGDANLKTEKANQAELGLNFQNDWVDAKIAAYYNRYNDFV 2216 Query: 465 -------------DYDDHTLKYYNEGKARIKGVEATANF-----DTGPLTHTVSYDYVDA 506 D D ++ + + A G E A F DTG V D V A Sbjct: 2217 YIVDTGGQWFNEEDNDFLPIRQWTQADAIFHGFEGEATFHLANNDTGAWDLRVFGDTVQA 2396 Query: 507 R 507 R Sbjct: 2397 R 2399 >AE012176 AE008922 |AE012176| Xanthomonas campestris pv. campestris str. ATCC 33913, section 84 of 460 of the complete genome. Length = 12556 Score = 75.1 bits (183), Expect = 6e-14 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 5/158 (3%) Frame = +3 Query: 10 ACSVTAFSAWAQDTSP-DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRR 68 A A +A A+D D L VTA R ++ V V+ R+ +D + D+ R Sbjct: 9654 AAEADAGAAAARDVHDFDRLQVTATRTQRALVEVPGTVDVIDREQLDNQLVRELKDLFRY 9833 Query: 69 LPGVDITQNGGSGQ-LSSIFIRGTNASHVLVLIDGVRLNLAGVSGS---ADLSQFPIALV 124 PGV +T G S + IRG + + V +L+D V ++ GS A+ + + + Sbjct: 9834 TPGVSVTSTSGRFTGASGVRIRGLDGNRVAILVDNVPVSDTFNFGSYLNANRNFVDLETL 10013 Query: 125 QRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISA 162 +RVE +RGP S++YGSDA+GGVV +T +P +SA Sbjct: 10014KRVEVVRGPASSLYGSDALGGVVAFVT--KDPSDYLSA 10121 Score = 35.4 bits (80), Expect = 0.050 Identities = 55/227 (24%), Positives = 76/227 (33%), Gaps = 28/227 (12%) Frame = +3 Query: 395 AGWEFIEGYRFIASYGTSYKAP----------NLGQLYGFYGNPNLDPEKSKQWEGAFEG 444 A W F + + A+Y ++AP NL Y NP+L E S+ G G Sbjct: 11049 AVWRFSDAWSAYANYAHGFRAPPYNDVNIGFTNLQARYTAIANPDLKSETSR---GGELG 11219 Query: 445 LT-------AGVNWRISGYRNDVSDLIDYDDHT-----LKYYNEGKARIKGVEATANFDT 492 L GVN + YRN + + + N IKG EA A D Sbjct: 11220 LRFNDTVGYLGVNVYYTDYRNFIESYAPAGVNAEGLLLFQSRNVDDVVIKGAEARAGVDL 11399 Query: 493 GPLTHTVSYD------YVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTR 546 G L + Y N DTPL + ++ L WG + +GT Sbjct: 11400 GALAGWQGWSVNSAVAYSQGDNLTDDTPL--NSVDPLRGTLGVAFDSERWGA--EVIGTF 11567 Query: 547 YDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDY 593 + G + DL + V G I NL D+ Y Sbjct: 11568 VARKRRPQLASYYTPAGYATLDLMGHWEFAPGAKVTGGIFNLADRRY 11708 >AE008712 AE006468 |AE008712| Salmonella typhimurium LT2, section 20 of 220 of the complete genome. Length = 21521 Score = 74.3 bits (181), Expect = 1e-13 Identities = 161/706 (22%), Positives = 269/706 (38%), Gaps = 107/706 (15%) Frame = +2 Query: 16 FSAWAQDTSP-DTLVVT------ANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRR 68 F +AQ+T+ DT++VT A + P +++TRQ + +TSV + Sbjct: 4064 FPLFAQETTKNDTVIVTSPVQSGATKLATPDIETPQSVSIITRQQFEEQGATSVRQAVSY 4243 Query: 69 LPGVDITQNGGSGQLSSIFIRG-TNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRV 127 PGV Q G S + I +RG ++ S V +DG+++ + + + L P L + + Sbjct: 4244 TPGVYSNQIGASNRFDYIVLRGFSDGSLDNVYLDGLKM-MGDTNSHSSLVVDPWFL-EDI 4417 Query: 128 EYIRGPRSAVYGSDAIGGVVNIITTRD--EPGTEISAGWGSNSYQN--YDV--------- 174 E +RGP S +YG + GG+V + + + + G E+ G+N+ + +DV Sbjct: 4418 EVVRGPASVLYGRSSPGGIVALTSRKPAFDAGGEVKLFAGNNNQRGAAFDVTGPLDDNER 4597 Query: 175 ----------------------------STQQQLGDKTRVTLLGDYAHTHGYDVVAYGNT 206 S ++ D+TR+ L+ Y H D ++ Sbjct: 4598 VAARLSGMTRYADSQFTPLKEERYALMPSLTWRITDRTRLDLMA-YPHR---DPEGGSHS 4765 Query: 207 GTQAQTD----NDGFLSKTLY-GALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPL-- 259 G Q N G +S T + G +++ D V GY+ +D +S L Sbjct: 4766 GLPYQGTVVPYNGGKISNTFFEGEDDYDKYDRRENMV---GYNIEHLFDNGWSVRQKLRY 4936 Query: 260 LDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQ 319 L T+ +Q + AG L ++ L YS S G S+ LD +V Sbjct: 4937 LHTKVTLNQVYAAGW-----LNETALNRGYSGS---------GEKMSAIALDNQLDGSVD 5074 Query: 320 WANNVIVGHGSIGAGVDWQKQTT-TPG----------------------TGYVEDGYDQR 356 + H + G+D+Q ++ T G T Y + + R Sbjct: 5075 TG---AINHRLL-VGIDYQDRSNHTTGYYGAFPPIDAFNPVYGAQPDYITLYSREKHKLR 5242 Query: 357 NTGIYLTGLQQVGDFTFEGAAR------------SDDNSQFGRHGTWQTSAG-WEFIEGY 403 TG YL + F R D S ++ +A + F G Sbjct: 5243 QTGYYLQDQMSWDRWRFTLGGRYDRVSVSNIDKLHDSRSDLDKNNVSTRAALLYLFDNGV 5422 Query: 404 RFIASYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISG--YRNDVS 461 SY T++ + G L+P K KQWE + G N + S YR + + Sbjct: 5423 APYLSYSTAFTPTSFADENGNV----LEPMKGKQWEAGVKYEPPGGNSQFSAAVYRINQT 5590 Query: 462 DLIDYDDHTLKYYNEGKARIKGVEATA-NFDTGPLTHTVSYDYVDAR-NAITDTPLLRRA 519 ++ ++ T Y + G+ KGVE A + + + +Y Y D R + +RA Sbjct: 5591 NIATKEEPTDPYRSIGEIESKGVELEAISHLSDSVRLQAAYTYTDIRYKKSSPQEQGKRA 5770 Query: 520 KQQVKYQLD-WQLYDFDWGITYQYL---GTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPV 575 + Q W YD G+ G RY +S T + +L D+ V Y + Sbjct: 5771 VYAPRNQASAWLSYDVKSGLLEGLTLGSGIRYVNGVTSDRLNTHTLPSYTLVDMVVGYDL 5950 Query: 576 TS----HLTVRGKIANLFDKDYETV---YGYQTAGREYTLSGSYTF 614 +S L+ + + NL DK Y Y G E ++ GS ++ Sbjct: 5951 SSIGLNGLSAQLNVNNLTDKRYVAACNSLSYCYFGAERSIVGSVSW 6088 >AE012549 AE008922 |AE012549| Xanthomonas campestris pv. campestris str. ATCC 33913, section 457 of 460 of the complete genome. Length = 11227 Score = 72.8 bits (177), Expect = 3e-13 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 14/191 (7%) Frame = -1 Query: 8 LTACSVTAFSAWAQDTSP---DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVND 64 L ++ F A AQ P D + VT +R ++ ++ AP ++ ++I T+V D Sbjct: 8308 LLLAMLSPFPALAQQADPQQLDAVTVTGSRIKRVQAEGPAPVQIIGSEEIRAQGFTTVYD 8129 Query: 65 VLRRLPGV------DITQNGGSGQLSSIFIRGTNASHVLVLIDGVR-----LNLAGVSGS 113 +L L D++ + S + +R + L+L++G R L G S Sbjct: 8128 MLGTLNQAIGTVEADVSWGSHTPNASPLNLRNLGPNRSLLLVNGRRVADYPLPYNGQSNV 7949 Query: 114 ADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYD 173 ++ S P A V RVE + G SA+YGSDAI GVVN+I ++ G + G+++ D Sbjct: 7948 SNYSNIPAAAVDRVEVLTGGASAIYGSDAIAGVVNVILKQNYSGDQFRMRGGTSTEGGRD 7769 Query: 174 VSTQQQLGDKT 184 + G +T Sbjct: 7768 TADVSWAGGRT 7736 Score = 30.4 bits (67), Expect = 1.6 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -1 Query: 387 RHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYG 423 + TW W I+ SY TS++AP++ L G Sbjct: 6565 KESTWSAGLQWRPIDSLLLRGSYATSFRAPDMHYLLG 6455 >AE012151 AE008922 |AE012151| Xanthomonas campestris pv. campestris str. ATCC 33913, section 59 of 460 of the complete genome. Length = 11108 Score = 70.1 bits (170), Expect = 2e-12 Identities = 99/409 (24%), Positives = 159/409 (38%), Gaps = 29/409 (7%) Frame = +3 Query: 26 DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLP---GVDITQNGGSG- 81 D + VT +R ++ + P ++ Q I + +V DVL + V+ GS Sbjct: 2733 DAVSVTGSRIKRAQVEGAQPVVTISAQQIQQEGFATVYDVLNSMNQQGSVEADTQWGSHT 2912 Query: 82 -QLSSIFIRGTNASHVLVLIDGVR-----LNLAGVSGSADLSQFPIALVQRVEYIRGPRS 135 S I +R L+L++G R L G S ++ S P A V+R+E + G S Sbjct: 2913 PNASPINLRDLGPGRTLLLVNGRRVADYPLPYGGESNFSNYSNIPSAAVERIEILTGGAS 3092 Query: 136 AVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHT 195 A+YGSDA+ GVVN+I RD G ++ G+ + D G +T YA Sbjct: 3093 AIYGSDAVAGVVNVILKRDYQGDQVRLRGGTATEGGRDSFDVSWAGGRTGENWSLTYALQ 3272 Query: 196 HGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSP 255 G Q +D S W+G R YG++ T Sbjct: 3273 ATRRDPLSGRDRAQMDDSDDMSYSN-------------WTGQNRLYGFNPFT-------- 3389 Query: 256 GSPLLDTRKLYSQSWDAG--LRYNGELIKSQLIT------SYSHSKDY--------NYDP 299 G L+D + AG R+ GE + + ++ + +++ DY ++ Sbjct: 3390 GLSLVDANTNERLAPPAGTCARFGGEFVDASRLSYNQNNGALTNAGDYCGMARDYADWGL 3569 Query: 300 HYGRYDSSATLD---EMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQR 356 G D SA L ++T WA + SIG + T P Y+ + Sbjct: 3570 VTGSEDYSAYLYGTWRFGEHTEAWA--TFSANRSIG------RWTYNPPYAYL-GPFQDA 3722 Query: 357 NTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRF 405 +TG L ++Q+ T A D + + + +W SAG + RF Sbjct: 3723 DTGRSLYAIRQM---TRREAGGWDRLANYNKEQSWDLSAGLRGVWADRF 3860 Score = 29.6 bits (65), Expect = 2.7 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Frame = +3 Query: 560 KMGGVSLWDLAVAYPVTSHLTVRGKIANLFD----KDYETVYGY--------QTAGREYT 607 ++G W+L+ Y +T H V + N+F+ ++ E YGY GRE Sbjct: 5292 RVGPAIYWNLSTGYKITDHAKVNFYVNNVFNEVGYENKERFYGYGFYNTTLFNPIGREVA 5471 Query: 608 LSGSYTF 614 +TF Sbjct: 5472 AEYVFTF 5492 >AE012419 AE008922 |AE012419| Xanthomonas campestris pv. campestris str. ATCC 33913, section 327 of 460 of the complete genome. Length = 3108 Score = 69.7 bits (169), Expect = 2e-12 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 12/178 (6%) Frame = +1 Query: 50 TRQDIDRWQ-----STSVNDVLRRLPGVDITQNGGSGQLSSIFIRG---TNASHVLVLID 101 +RQ IDR Q + S++D L+R+PG+ I G+G L + +RG + + V VL D Sbjct: 1087 SRQVIDREQLRNGGNRSLDDALQRVPGIKIFDETGTGALPQLMLRGLYESRSGRVQVLED 1266 Query: 102 GVRLNLAGVSGSADLSQFPIAL--VQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTE 159 G+ L LA G LS FP+ L + R++ +RG + YG + +GGV+N+++ E Sbjct: 1267 GIPLALAPY-GQTSLSLFPVGLNQIDRIDIVRGGAAVQYGPNNVGGVINLVS------KE 1425 Query: 160 ISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGT--QAQTDND 215 I + W + Q Q + ++ G G V A G +A +D D Sbjct: 1426 IPSDWTTTLAHKITAGGQGQFLQDSALSSGGYVTDNVGLQVDANRTYGEYWRAHSDTD 1599 >AE008703 AE006468 |AE008703| Salmonella typhimurium LT2, section 11 of 220 of the complete genome. Length = 20269 Score = 68.6 bits (166), Expect = 5e-12 Identities = 156/714 (21%), Positives = 258/714 (36%), Gaps = 122/714 (17%) Frame = +2 Query: 2 IKKASLLTACSVTAFSAWAQ---DTSPDTLVVTANRFEQPRSTVLAPT------------ 46 ++K +++ A +V+ S +AQ +T+ VTA Q + APT Sbjct: 6857 LRKIAVVVATAVSGMSVYAQAAVQPKEETITVTAAPAAQESAWGPAPTIAAKRSATTTKT 7036 Query: 47 -----------TVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASH 95 +VVT +++ Q SV + L PGV ++ G S + IRG ++ Sbjct: 7037 DTPIEKTPQSVSVVTNEEMQMHQFQSVKEALGYTPGVTVSSRGASNTYDFVIIRGFSSVG 7216 Query: 96 VLV--LIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR 153 + +DG++L A + + +++RVE +RGP S +YG GG++++++ R Sbjct: 7217 LSQNNYLDGLKLQ-GNFYNDAVIDPY---MLERVELMRGPTSVLYGKSNPGGIISMVSKR 7384 Query: 154 --DEPGTEISAGWGS-NSYQ-NYDVS--------------------TQQQLG-------- 181 EP EI G+ N +Q +D S +QQ Sbjct: 7385 PTTEPLKEIQFKMGTDNLFQTGFDFSDSLDDNGEFSYRLTGLARSTNEQQKSSESQRYAI 7564 Query: 182 ---------DKTRVTLL---------GDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLY 223 +KT T L G Y V G + TD + S Y Sbjct: 7565 APSFTWRPDEKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGASNNTY 7744 Query: 224 G--------ALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPG----------SPLLDTRKL 265 + EH F D ++ + +T + Y G ++D +L Sbjct: 7745 SRNEKMVGYSFEHGFNDTFTVRQNLRFVEMKTAQKSVYGTGIAADGHTLNRGTIVDNERL 7924 Query: 266 YSQSWDAGLRYNGELIKSQLIT-SYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNV 324 + S D L +S+ T H+ D R D +AT ++ NN Sbjct: 7925 QNFSVDTQL-------ESKFATGDIDHTLLTGVDFMRMRNDINATFGSAP--SIDLYNNY 8077 Query: 325 IVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTG----------LQQVGDFTFE 374 + + G +Q + YV+D + L G ++Q E Sbjct: 8078 HPEYFAFGGAEPYQMNESKQTGLYVQDQAEWNKWVFTLGGRYDWSKQATTVRQNSTTPTE 8257 Query: 375 GAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFYGNPNLD--P 432 G +D+ R G + F G SY S++ + + P + P Sbjct: 8258 GYIERNDHQFTWRGG-----VNYVFDNGISPYFSYSQSFEP----SAFDLWSTPRVSYKP 8410 Query: 433 EKSKQWEGAFEGLTAGVNWRISG---YRNDVSDLIDYDDHTLKYYNEGKARIKGVEATAN 489 K +Q+E + + + ++G ++L + L G+ R +GVE A Sbjct: 8411 SKGEQYEAGVKYVPKDMPVVVTGAVYQLTKTNNLTADPTNPLAQVPAGEIRARGVELEAK 8590 Query: 490 FD-TGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLD--WQLYDFDWG-ITYQYLGT 545 T + T SY Y DA DT L +QV + W Y F+ G ++ LGT Sbjct: 8591 AALTANINMTASYTYTDAEYT-KDTNLKGNTPEQVPEHMASLWGDYTFNEGPLSGLTLGT 8767 Query: 546 RYDKDYSSY--PYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIA----NLFDKDY 593 SSY P + K+G ++ D V Y + IA NL D++Y Sbjct: 8768 GGRFIGSSYGDPANSFKVGSAAVMDAVVKYDLARFGMAGSSIAVNVNNLLDREY 8929 Score = 28.5 bits (62), Expect = 6.1 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Frame = +1 Query: 243 YDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELI---KSQLITSYSHSKDYN-YD 298 YDN + Y S P + R L YNG S + Y D N Y Sbjct: 16096 YDNERDDGVYVSLSIPWGNNRTL---------SYNGSFSDDNNSNQVGYYERIDDRNNYQ 16248 Query: 299 PHYGRYDSSATLDEMKQYTVQWAN 322 + GR D+ ATLD +Y +A+ Sbjct: 16249 INAGRADNGATLDGYYRYQASYAD 16320 >AE012390 AE008922 |AE012390| Xanthomonas campestris pv. campestris str. ATCC 33913, section 298 of 460 of the complete genome. Length = 10194 Score = 66.6 bits (161), Expect = 2e-11 Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 17/201 (8%) Frame = +2 Query: 5 ASLLTACSVTAFSAWAQDTSP------DTLVVTANRFEQPRSTVLAPT--------TVVT 50 +++L S AF+ +P D + V R ++P S TVVT Sbjct: 1373 SAVLLTLSAPAFAQPGDAPAPPGAVDLDAIRVQQERAQKPSSPKYTEALRDTPQTITVVT 1552 Query: 51 RQDIDRWQSTSVNDVLRRLPGVDI-TQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAG 109 +Q +D+ S+ DVL LPG+ GG G SI +RG AS + DGVR Sbjct: 1553 KQTMDQQNLLSLRDVLSTLPGITFGAGEGGGGYGDSINLRGFTASSD-ITTDGVR----- 1714 Query: 110 VSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPG--TEISAGWGSN 167 SA S+ ++ VE I G SA+ G+ ++GG +N++T G T + G GS+ Sbjct: 1715 --DSAQYSRSDTFNLEAVELINGANSAMSGAGSVGGNINLVTKTAGQGDFTNVLIGGGSD 1888 Query: 168 SYQNYDVSTQQQLGDKTRVTL 188 Y V + + T V L Sbjct: 1889 RYGRLTVDSNYDFENGTAVRL 1951 Score = 35.0 bits (79), Expect = 0.065 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 28/212 (13%) Frame = +2 Query: 427 NPNLDPEKSKQWE--GAFEGLTAGVNWRISGYRNDVSDL-IDYDDHTL-KYYNEGKARIK 482 N N++PE + E G ++ L + + +RN+ + ++ D + + +GKAR+ Sbjct: 2993 NCNVEPESAVNIELGGKWDVLNERLALTAAVFRNERENYKVNSGDPLIPEQVLDGKARVD 3172 Query: 483 GVE-ATANFDTGPLTHTVSYDYVDAR---------NAITDTPLLRRAKQQVKYQLD---- 528 G+ A + T + +Y ++D+ ++T P+ R Q Sbjct: 3173 GIALGAAGYLTERWSVFANYTFLDSEVLQSVSNRTASLTGDPIAGRELVQTPRNAGNLWT 3352 Query: 529 -WQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIAN 587 +QL ++ +G Y G+ Y + S+ Y+ K + V V L+++ + N Sbjct: 3353 TYQLNEWTFGYGVNYQGSFYPNNTSTAVYR--KTDAYWVHRAMVGLRVNDWLSLQLNVNN 3526 Query: 588 LFDKDYET---------VYGYQTAGREYTLSG 610 LFDK+Y T G TAG + L G Sbjct: 3527 LFDKEYYTSIRNNLTVNAAGTVTAGSGWALPG 3622 Score = 28.1 bits (61), Expect = 7.9 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +3 Query: 17 SAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLP 70 S W + T P A +PR+T P T +R RW ST +R P Sbjct: 3768 SVWTRPTGPMAASPPAISPRRPRTTRSCPKTARSRARPVRWCSTRCRAAVRFFP 3929 >AE012422 AE008922 |AE012422| Xanthomonas campestris pv. campestris str. ATCC 33913, section 330 of 460 of the complete genome. Length = 10431 Score = 65.9 bits (159), Expect = 3e-11 Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 31/215 (14%) Frame = +2 Query: 8 LTACSVTAFSAWAQDTSP-----DTLVVTANRFEQPRSTVL---APTTVVTRQDIDRWQS 59 L +V + +A AQ +P DT++VT R TVL P V+T +DI + + Sbjct: 7649 LAVAAVLSANAQAQQAAPGATTLDTVIVTGTRASD--RTVLESTVPVDVLTAEDIRK--A 7816 Query: 60 TSVNDVLRR-----LPGVDI---TQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVS 111 VN L LP + + +GG+ + + +RG + VLVL++G R + + + Sbjct: 7817 GVVNGELGSALQALLPSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRRHTSALV 7996 Query: 112 GS----------ADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEIS 161 + D + PI ++R+E +R A YGSDAI GV+N+I + E+ Sbjct: 7997 NTDSKIGKGTTPVDFNSIPINAIKRIEVLRDGAGAQYGSDAIAGVINVILDDNPERGELE 8176 Query: 162 AGWGSNSYQ----NYDVSTQQQLGDKTRV-TLLGD 191 A +G+ + N V+ Q +V TLLGD Sbjct: 8177 ASFGAYNTDVEPINRRVTDGQTSYASAKVGTLLGD 8281 >AE008769 AE006468 |AE008769| Salmonella typhimurium LT2, section 73 of 220 of the complete genome. Length = 20665 Score = 64.7 bits (156), Expect = 8e-11 Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 19/280 (6%) Frame = +1 Query: 20 AQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVN--DVLRRLPGVDITQN 77 A + T++VTA A +V+ +D+ R + VN + L +PG+ + Sbjct: 17686 ASAPNEQTMIVTATPQTVSELDTPAAVSVIEGEDM-RLATPRVNLSESLTSVPGLQVQNR 17862 Query: 78 GGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGV-----SGSADLSQFPIALVQRVEYIRG 132 Q I IRG + + G+RL + G+ G +S I +Q VE +RG Sbjct: 17863 QNYAQDLQISIRGFGSRSAFG-VRGIRLYVDGIPATMPDGQGQISNIDINSIQDVEVLRG 18039 Query: 133 PRSAVYGSDAIGGVVNIITT--RDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTR----- 185 P SA+YG +A GGV+N+ T R P E S+ +GS Y + +GD T+ Sbjct: 18040 PFSALYG-NASGGVINVTTETGRQPPTLEASSYYGSYGSWRYGLKATGAMGDGTQPGDVY 18216 Query: 186 VTLLGDYAHTHGYDVVA-----YGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRG 240 T+ THGY + N + D+ LS ++ +++ D G Sbjct: 18217 YTVSTTRFTTHGYRDHSGARKNLANAKLGVRLDDVSKLS-LIFNSVDIKADDP------G 18375 Query: 241 YGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGEL 280 ++ D +P + +TRK Q+ AGLRY +L Sbjct: 18376 GLTESEWKADPQQAPRAEQYNTRKTIKQT-QAGLRYERQL 18492 >AE012350 AE008922 |AE012350| Xanthomonas campestris pv. campestris str. ATCC 33913, section 258 of 460 of the complete genome. Length = 12191 Score = 63.2 bits (152), Expect = 2e-10 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%) Frame = -1 Query: 4 KASLLTACSVTAFSAWAQD------TSPDT------LVVTANRFEQPRSTVLAPTTVVTR 51 + ++L + A A AQ SP+T + VT + + +P V+ R Sbjct: 9053 RRAILLVLAAAALPAAAQQQGSDASASPETAQTLEQVNVTGTHLRRVDAETASPVVVIDR 8874 Query: 52 QDIDRWQSTSVNDVLRRLPGV------DITQNGGSGQLSSIFIRGTNASHVLVLIDGVRL 105 Q I+ +++ +L++LP + +G S + + +R LVL++G R+ Sbjct: 8873 QRIEDSGKSTLGQLLQQLPVMAGFMAGPALNSGFSHGRALVSLRNLGPERTLVLVNGHRM 8694 Query: 106 NLAGVSGSA------DLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNII 150 AG + S D++ P A+V+RVE + S+VYGSDAIGGVVNII Sbjct: 8693 --AGPASSVASAPGVDVNAIPAAMVERVEVLTDGASSVYGSDAIGGVVNII 8547 >AE012233 AE008922 |AE012233| Xanthomonas campestris pv. campestris str. ATCC 33913, section 141 of 460 of the complete genome. Length = 13076 Score = 60.5 bits (145), Expect = 1e-09 Identities = 80/315 (25%), Positives = 126/315 (40%), Gaps = 50/315 (15%) Frame = -1 Query: 6 SLLTACSVTAFSAWAQDTSPD-----------------------TLVVTANRFEQPRSTV 42 SL A ++AF+A A +SPD +++VT +R + Sbjct: 6755 SLALAAVLSAFAATATASSPDPQTTADQTAPDQAGDAPDAKRLDSVMVTGSRIGRVGFDS 6576 Query: 43 LAPTTVVTRQDIDRWQSTSVNDVLRRLP--GVDIT----QNGGSGQLSSIFIRGTNASHV 96 L P TVV + I + T++ D L P G T Q+G ++ I G ++ Sbjct: 6575 LEPATVVGAEYIQGYGFTNIADALFIQPSFGAGATSRGDQSGYGAGVNFIGRFGLGSNRQ 6396 Query: 97 LVLIDGVRL------NLAGVSGSA---DLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVV 147 L L++G R + G SG DL+ P L+ +VE I + YGSDAI GV Sbjct: 6395 LTLVNGRRFVTSNPPTVFGPSGGGTQVDLNVIPTILIDQVETIGVGGAPTYGSDAISGVS 6216 Query: 148 NIITTRDEPGTEISAGW-----GSNSYQNYDVSTQQQL-GDKTRVTLLGDYAHTHGYDVV 201 N+I ++ G E+ G+ G N NY G + +T+ D ++ G Sbjct: 6215 NLILRKNFDGAEVRMGYGLTDRGDNERFNYSALLGSNFGGGRGNITIALDADNSQGV--- 6045 Query: 202 AYGNTGTQAQTDNDGFLSKTLYGA-----LEHNFTDAWSGFVR-GYGYDNRTNYDAYYSP 255 GT + D + ++ A + T A G V G G++ N P Sbjct: 6044 ----LGTARRFYRDAYSTRANPSASAIANFQPGRTPANDGRVNPGIGFNTGPNDGI---P 5886 Query: 256 GSPLLDTRKLYSQSW 270 G L+ R++ +W Sbjct: 5885 GRVLIRNRRISDMTW 5841 >AE012104 AE008922 |AE012104| Xanthomonas campestris pv. campestris str. ATCC 33913, section 12 of 460 of the complete genome. Length = 12966 Score = 60.1 bits (144), Expect = 2e-09 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 17/209 (8%) Frame = +3 Query: 7 LLTACSVTAFSA----WAQDTSPDTLVVTANRFEQPRS------TVLAPTTVVTRQDIDR 56 L AC + SA A D +P + A + + R + A TVV D +R Sbjct: 1497 LAAACGLFVASASSLALAADAAPPIAALPAVQVDAARVHGVDDFDLPASFTVVVADDDNR 1676 Query: 57 WQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGV-----S 111 + V+++L +PG+ Q + + IRG A + GVRL + G+ Sbjct: 1677 -RGAQVSELLDGIPGLVARDRQNYAQDTQLSIRGFGARSTFG-VRGVRLLVDGIPASMPD 1850 Query: 112 GSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGT--EISAGWGSNSY 169 G LS F + QRVE +RGP SA+YG+ + GGV+ + + +PG + A +GSN+ Sbjct: 1851 GQGQLSHFNVLGAQRVEVLRGPFSALYGNSS-GGVLQLWSADGKPGDPWRLRATYGSNAT 2027 Query: 170 QNYDVSTQQQLGDKTRVTLLGDYAHTHGY 198 N Q G L ++ T G+ Sbjct: 2028 VNTGAQLLGQQG-AVHYNLAANHFETDGF 2111 >AE012135 AE008922 |AE012135| Xanthomonas campestris pv. campestris str. ATCC 33913, section 43 of 460 of the complete genome. Length = 10978 Score = 58.9 bits (141), Expect = 4e-09 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Frame = -3 Query: 44 APTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRG-TNASHVLVLIDG 102 A TV+ R+ ++ + ++N+ + + + G+G LS++ RG T+++ V+ L DG Sbjct: 10499 ASLTVILREQLNARGNANLNNAITWAGAISAMPHPGNG-LSALSSRGFTDSASVMRLYDG 10323 Query: 103 VRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPG---TE 159 +R G F ++R+E +RGP S +YG AIGGVVNI+ + G E Sbjct: 10322 IRQ----YGGVGVTFPFDTWSIERIEVLRGPASVIYGDGAIGGVVNIVPKKPHFGPVENE 10155 Query: 160 ISAGWGSNSYQNYDVSTQQQLGDKT--RVTLLGDYA 193 + A GS V + L R+ + G+Y+ Sbjct: 10154 LRATVGSQDTARLGVGSGGALSSNLAYRLDVSGNYS 10047 >AE012136 AE008922 |AE012136| Xanthomonas campestris pv. campestris str. ATCC 33913, section 44 of 460 of the complete genome. Length = 12224 Score = 58.5 bits (140), Expect = 5e-09 Identities = 124/551 (22%), Positives = 189/551 (34%), Gaps = 137/551 (24%) Frame = +1 Query: 7 LLTACSVTAFSAWAQDTSPDTLVVTANRFEQ--------PRSTVLAPTTV--VTRQDIDR 56 +L+ A A+A+D ++ + FE RS + +PT V +TR++++R Sbjct: 2725 MLSTSLAVALPAFAEDREANSSTLVDKEFEVITVGSRFGGRSMLQSPTPVDLITREEMER 2904 Query: 57 WQSTSVNDVLR-RLPGVDITQ---NGGSGQLSSIFIRGTNASHVLVLIDGVR------LN 106 + +L+ +P +I + +G L +RG VLVLI+G R LN Sbjct: 2905 NGRVDLLQMLKVEVPSFNIPRPIASGAGDYLMPPSLRGLGPGEVLVLINGKRRHTSADLN 3084 Query: 107 LAGVSGSADLS----QFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR--------- 153 + G D+S P + RVE +R +A YGSDAI GV+N+ R Sbjct: 3085 SSNGVGRGDISIDFNAIPSLALSRVEVLRDGAAAQYGSDAISGVINLTLDRSLETVAHAT 3264 Query: 154 -------DEPGTEISAGWGSNSYQN---------YDVSTQQQLGDKTRVTLLGDYAHTHG 197 D E++A G + D++ + TR G A+ G Sbjct: 3265 YLATSKGDGQTHEVAAATGFPIGREGVVRLTAAVQDIAASNRARPDTRQQYFG--ANAAG 3438 Query: 198 YDVVAYGNTGT--------------QAQTDNDGFLSKTLYGA---LEHNFTDAWSGFVRG 240 V+ GN G+ +A D D F T L +N S V Sbjct: 3439 APVMPSGNYGSGTGLTAPNGRLDPLEAGFDRDVFFQGTQPSTNRQLFYNLVTPLSDAVEF 3618 Query: 241 YGYDNRTNYD-----------------AYYSPG-SPLLDTR-------------KLYSQS 269 Y + + D A Y G SP+LDTR L Sbjct: 3619 YSFGGHSRLDGDITYFFRRAGQDETVRAIYPDGYSPMLDTRIDNTSVALGLRGHALAGFG 3798 Query: 270 WDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHG 329 WD Y S + S + Y S A D Q+T N + G Sbjct: 3799 WDLSTVYGRNTQDLFYANSVNVSLGAGSPTRF--YRSGADFD---QWTTNLDLNRELALG 3963 Query: 330 S-------IGAGVDWQKQTTTPG--TGYVEDG---------------------------- 352 S +GA +++ G GY+ G Sbjct: 3964 SFSPLRLALGAEHRYEQYRLLSGAEAGYINGGVPILDGPNAGRPAIPGSQPGPSNGPDDN 4143 Query: 353 --YDQRNTGIYLTGLQQVGD-FTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASY 409 D+ + IY+ Q D AAR + S FG + ++ ++ E + SY Sbjct: 4144 ALLDRNSQAIYVEVEQSPSDRLLLSAAARHERYSDFGNTTNVKIASRFQLSEQWALRGSY 4323 Query: 410 GTSYKAPNLGQ 420 T ++AP L Q Sbjct: 4324 NTGFRAPALAQ 4356 >AE012292 AE008922 |AE012292| Xanthomonas campestris pv. campestris str. ATCC 33913, section 200 of 460 of the complete genome. Length = 11058 Score = 56.2 bits (134), Expect = 3e-08 Identities = 83/316 (26%), Positives = 128/316 (40%), Gaps = 26/316 (8%) Frame = +2 Query: 18 AWAQDTSPDTLVVTANRF------EQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPG 71 A Q T D + VT R+ EQ R+ A V+T +D+ ++ +V D L+R+PG Sbjct: 7802 AEVQATDLDAVTVTGYRYAIEKSLEQKRNAN-AVVDVITAEDVGKFPDKNVADALQRVPG 7978 Query: 72 VDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSG----SADLSQFPIALVQRV 127 V I+++GG G+ ++ +RG ++ VL ++G + A +G S + + P L+ Sbjct: 7979 VVISRDGGEGK--NVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSA 8152 Query: 128 EYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVT 187 E + P + + IGG V I+ TR E ++G+ S T KT Sbjct: 8153 ELYKTPEARI-DEGGIGGTV-ILQTRRPLELEPNSGFVSAE------GTWSDTSKKTDGQ 8308 Query: 188 LLGDYAHTHGYD-----VVAYGNTGTQAQTDNDGFLSKTLYGALE-----------HNFT 231 G Y+ H D V Y A+T N S YG E +F Sbjct: 8309 FSGSYS-WHDQDNRFGVFVGYTQQKRTARTLNASTESWQWYGRDEGGPAVDVNGNPSDFN 8485 Query: 232 DAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSH 291 W G G G+ N D YS G + L ++ R E QL + Sbjct: 8486 ANWWG---GTGF---WNQDGNYSTGFMMPTAVSLDAK------REERERKGGQLTLQFKP 8629 Query: 292 SKDYNYDPHYGRYDSS 307 + D +Y R+D S Sbjct: 8630 TDDLTLTANYFRFDLS 8677 >AE012480 AE008922 |AE012480| Xanthomonas campestris pv. campestris str. ATCC 33913, section 388 of 460 of the complete genome. Length = 11838 Score = 54.7 bits (130), Expect = 8e-08 Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 2/139 (1%) Frame = +1 Query: 30 VTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIR 89 V+ R EQ + +VVTRQ +D TSV D L G+ I Q+ G+ I+ R Sbjct: 7390 VSIGRGEQRLKDIPQSISVVTRQLMDEQNITSVYDALASTTGITIVQSPQGGKY--IYAR 7563 Query: 90 GTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNI 149 G + + V DGV LN G+ G A + + R E +RG + G+ G VN+ Sbjct: 7564 GFDIT--TVQYDGVPLN-RGMYGRASNYSANMGIYDRAEVLRGAAGLLQGAGNPSGAVNL 7734 Query: 150 ITTR--DEPGTEISAGWGS 166 + R D PG + GS Sbjct: 7735 VRKRPLDVPGVSVMLQAGS 7791 >AE012471 AE008922 |AE012471| Xanthomonas campestris pv. campestris str. ATCC 33913, section 379 of 460 of the complete genome. Length = 10154 Score = 54.3 bits (129), Expect = 1e-07 Identities = 164/745 (22%), Positives = 265/745 (35%), Gaps = 147/745 (19%) Frame = +1 Query: 6 SLLTACSVTAFSAWAQDTSP----DTL--VVTANRFE--QPRSTVLAPT----------- 46 +L A ++ A +A AQD +P +TL V+ R E Q R T A Sbjct: 6811 ALQCAGALCATAAHAQDNAPAPTANTLDQVLVTGRTEGYQVRGTNTATKLPLTLRETPQS 6990 Query: 47 -TVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRL 105 TV TRQ I+ + ++ +VL++ PGV + + L + RG S+ + DGV Sbjct: 6991 LTVFTRQRIEDFNLITIAEVLQQTPGVTVQSYDSNRTLFA--ARGFAISN--FMFDGVPT 7158 Query: 106 N-LAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNII----TTRDEPGTEI 160 N G G++ LS ++ +R+E +RG V GS VN++ TT + T + Sbjct: 7159 NYTTGAGGNSILSD--TSIYERIEVVRGASGLVTGSGNPSATVNMVRKRPTTAFQASTSL 7332 Query: 161 SAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSK 220 + G DV+ G + R ++G Y + + Q D S Sbjct: 7333 NVGSWDYRRAELDVAGPLTSGGRMRGRVVGAYTEKDSW---------VRFQQDR----SP 7473 Query: 221 TLYGALEHNFTD------------------AWSG----FVRG------YGYDNRTNYDAY 252 ++YG LE + TD AWS F G Y ++ + Sbjct: 7474 SMYGVLEADLTDSTRLRAGIDHLATHSDGGAWSAAPLFFSDGTPARLPRSYSAAARWNRW 7653 Query: 253 YSPGSPLLDT-RKLYSQSWDAGLRYNGELIKS-QLITSYSHSKDY---------NYDPHY 301 + + T + ++ W L YN + L+ + S+S + Y Sbjct: 7654 ERESTNVFATLEQQFAGGWSGRLAYNHRATDTDSLLFAGSNSASFADARTGLGLRVSDTY 7833 Query: 302 GRYDS-SATLDEMKQYTVQW---ANNVIVGH-------GSIGAGV--------------D 336 G ++ LD QW A+ ++VG G++ + D Sbjct: 7834 GVSETRENALDLYASGPFQWLGRAHELVVGANHYDRDLGTLRTAITARPYSLTAFPSIFD 8013 Query: 337 WQ---KQTTTPGTGYVEDGYDQRNTGIYLT-------GLQQVGDFTFEGAARSDDN---- 382 W + TT G + + TG Y L+ +G + + DN Sbjct: 8014 WNGDVGRPTTTNAGIPSSITNTQETGYYAAVRLNPTDALKLIGGGRYSSWNTATDNYSPA 8193 Query: 383 SQF-GRHGTWQTSAGWEFIEGYRFIA-------SYGTSYKAPNLGQLYGFYGNPNLDPEK 434 +QF GR + A ++ ++ SY ++A NL N LDP Sbjct: 8194 NQFTGRSADYDADALTPYLGAIYDLSRHLSAFVSYSDVFQAQNLRD----RTNQQLDPVV 8361 Query: 435 SKQWEGAFEGLTAG--VNWRISGYRNDVSDLIDYD----DHTLKYYNEGKARIKGVEA-T 487 E F+G G + ++G+ ++ + D ++L + + GVE Sbjct: 8362 GANLEYGFKGEFFGGALYAALNGFHMQQDNVAEIDPEVAPNSLPDGSSAYRAVSGVETWG 8541 Query: 488 ANFD-----------TGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDW 536 F+ TG T+ S D AR T L R ++ DW L Sbjct: 8542 GEFEVSGAITPDWSMTGGYTYAYSTDQRGARVFTTSPMHLARFNTTYRFG-DWTL---GG 8709 Query: 537 GITYQYLGTRYDKDYSSYPYQTV------------------KMGGVSLWDLAVAYPVTSH 578 GI++Q + Y QT+ GG L DL Y + Sbjct: 8710 GISWQ---------SAVYQNQTIPTGRFTAAGAPITRSGRVTQGGYLLVDLMGRYRINEQ 8862 Query: 579 LTVRGKIANLFDKDYETVYGYQTAG 603 L+V + NLFDK Y G+ +G Sbjct: 8863 LSVGVTVTNLFDKVYYRNVGFFNSG 8937 >AE012148 AE008922 |AE012148| Xanthomonas campestris pv. campestris str. ATCC 33913, section 56 of 460 of the complete genome. Length = 10978 Score = 53.9 bits (128), Expect = 1e-07 Identities = 85/350 (24%), Positives = 133/350 (38%), Gaps = 29/350 (8%) Frame = +2 Query: 136 AVYGSDAIGGVVNIIT-------TRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTL 188 A YGS G +I+T T E T ++ G+GS S +D TL Sbjct: 2945 AGYGSTQTAGFKSILTAGYGSTQTAQERST-LTTGYGSTSTAGHDS------------TL 3085 Query: 189 LGDYAHTH--GYDVV---AYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGY 243 + Y T GY + YG+T T ++ S + G + S + GYG Sbjct: 3086 IAGYGSTQTAGYKSILTTGYGSTQTAQES------SSLIAGYGSSSMAGPDSSLIAGYGS 3247 Query: 244 DNRTNYDAYYSPGSPLLDTRKLYSQSW---DAGLRYNGELIKSQLITSYSHSKDYNYDPH 300 YD++ + G T+ S SW G +S LI Y ++ Y+ Sbjct: 3248 TQTAGYDSFLTAGYG--STQTAQSSSWLITGYGSTSTASF-QSSLIAGYGSTQTAGYEST 3418 Query: 301 Y-GRYDSSATLDEMKQYTVQWANNVIVGHGSI---GAGVD---WQKQTTTPGTGYVED-G 352 Y S+ T E+ T + + GHGSI G G + + T G G + G Sbjct: 3419 LTAGYGSTQTAQEISWLTTGYGSTQTAGHGSILTAGYGSNSTAGYESTLIAGYGSTQTAG 3598 Query: 353 YDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGR-----HGTWQTSAGWEFIEGYRFIA 407 Y+ T Y + L + + + S + + F +G+ QT+ G A Sbjct: 3599 YESTLTAGYGSTLTALENSSLTAGYGSTEIAGFSSTLIAGYGSSQTAGG-----DSTLTA 3763 Query: 408 SYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGV-NWRISGY 456 YG++ A + L YG+ + S G LT+GV ++ +GY Sbjct: 3764 GYGSTLMALDNSTLTAGYGSTETAGQDSSLIAGYGSNLTSGVRSYLTAGY 3913 Score = 32.3 bits (72), Expect = 0.42 Identities = 91/372 (24%), Positives = 129/372 (34%), Gaps = 66/372 (17%) Frame = +2 Query: 151 TTRDEPGTEISAGWGSNSYQNYDVS-------TQQQLGDKTRVTLLGDYAHTH----GYD 199 T + G++++AG+GS S D S TQ G+ + L Y T G D Sbjct: 1424 TQTAQNGSDLTAGYGSTSTAGTDSSLIAGYGSTQTSGGESS---LTAGYGSTQTAQDGSD 1594 Query: 200 VVA-YGNTGT------------QAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNR 246 + A YG+TGT QT + YG+ + T S GYG + Sbjct: 1595 LTAGYGSTGTAGADSSLIAGYGSTQTSGNDSSLTAGYGSTQTARTG--SDLTAGYGSTST 1768 Query: 247 TNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIK-SQLITSYSHSKDYNYDPH----Y 301 D+ G T S S AG K S L T Y + D Y Sbjct: 1769 AGADSTLIAGYGSTQTSGGDS-SLTAGYGSTQTARKGSDLTTGYGSTSTAGADSTLIAGY 1945 Query: 302 GRY-----DSSATLDEMKQYTVQWANNVIVGHGSIG-AGVD------WQKQTTTPGTGYV 349 G +SS T T + +++ G+GS AG D + T+ G + Sbjct: 1946 GSTQTSGSESSLTAGYGSTQTARKGSDLTAGYGSTSTAGADSTLIAGYGSTQTSGGESSL 2125 Query: 350 EDGYDQRNTGI--------YLTGLQQVGDFTFEGAARSD-----DNSQFGRHGTWQTS-A 395 GY T Y + GD T S D+S +G+ QT+ + Sbjct: 2126 TAGYGSTQTARKGSDLTAGYGSTSTAGGDSTLVAGYGSTQTSGGDSSLTAGYGSTQTARS 2305 Query: 396 GWEFIEGY----------RFIASYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGL 445 G + GY IA YG++ + N L YG+ S G Sbjct: 2306 GSDLTTGYGSTSTAGGESTLIAGYGSTQTSGNASSLTAGYGSTQTARSGSDLTTGYGSTS 2485 Query: 446 TAGV-NWRISGY 456 TAG + I+GY Sbjct: 2486 TAGADSTLIAGY 2521 Score = 28.9 bits (63), Expect = 4.6 Identities = 44/168 (26%), Positives = 61/168 (36%), Gaps = 10/168 (5%) Frame = +2 Query: 322 NNVIVGHGSIG-AGVD------WQKQTTTPGTGYVEDGYDQRNT---GIYLTGLQQVGDF 371 + +I G+GS G AG D + T G + GY T G LT G Sbjct: 1157 SELIAGYGSTGVAGSDSTIVAGYGSSQTAGGGSTLTAGYGSTQTARNGSELTA--GYGST 1330 Query: 372 TFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFYGNPNLD 431 GA D+S +G+ QTS G + A YG++ A N L YG+ + Sbjct: 1331 ETAGA----DSSLIAGYGSTQTSGGDSSLT-----AGYGSTQTAQNGSDLTAGYGSTSTA 1483 Query: 432 PEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKA 479 S G T+G ++ D D T Y + G A Sbjct: 1484 GTDSSLIAGYGSTQTSGGESSLTAGYGSTQTAQDGSDLTAGYGSTGTA 1627 >AE012273 AE008922 |AE012273| Xanthomonas campestris pv. campestris str. ATCC 33913, section 181 of 460 of the complete genome. Length = 10327 Score = 53.5 bits (127), Expect = 2e-07 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 12/208 (5%) Frame = +3 Query: 20 AQDTSPDTLV---VTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQ 76 A+ T P TL VTA + E+ V +V+ Q + + D+ +PG+ +T Sbjct: 3189 AERTEPATLAALTVTAQKREEALQDVPIIVSVLPEQLLLDNGVHDIKDLQVLVPGLIVTS 3368 Query: 77 NGGSGQLSS----IFIRGTNA---SHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEY 129 + Q ++ I G NA S V V+IDGV GV G +DL + ++R+E Sbjct: 3369 TQSAAQTTARIRGIGTVGDNAGLESSVGVVIDGVPRARNGV-GFSDLGE-----LERIEV 3530 Query: 130 IRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVST--QQQLGDKTRVT 187 ++GP+ V+G + GV+N++T R A + +Y + ++ +G+ + + Sbjct: 3531 LKGPQGTVFGKNTSAGVINVVTRRPSFTRSAEAELTAGNYGAFGLAAAFNDAVGETSALR 3710 Query: 188 LLGDYAHTHGYDVVAYGNTGTQAQTDND 215 + G++ V G A D D Sbjct: 3711 VYAAKRRRDGFENVVTGAGPRTATDDGD 3794 >AE012542 AE008922 |AE012542| Xanthomonas campestris pv. campestris str. ATCC 33913, section 450 of 460 of the complete genome. Length = 11491 Score = 50.4 bits (119), Expect = 1e-06 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Frame = -1 Query: 32 ANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIF-IRG 90 A R + P + VV R ID Q T + DV+ + V G G S F IRG Sbjct: 2878 ATRTQTPVERIPQAIQVVPRSVIDEQQLTRLVDVVANVSNVQ--PGGTQGNRSETFVIRG 2705 Query: 91 TNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNII 150 AS V DG+ LN + + + +A V +VE ++GP + +YG GGV+N++ Sbjct: 2704 FEASSYAV--DGILLN---PTQNFTETVRDLANVAQVEVLKGPAAVLYGRGEPGGVINLV 2540 Query: 151 TTRDE 155 T R + Sbjct: 2539 TLRPD 2525 Score = 30.0 bits (66), Expect = 2.1 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = -1 Query: 478 KARIKGVEATANFDTGPLTHTV--SYDYVDA 506 +A EA A FDTGPL H V +YVDA Sbjct: 2014 RATTSQTEALARFDTGPLRHQVLAGAEYVDA 1922 >AE012527 AE008922 |AE012527| Xanthomonas campestris pv. campestris str. ATCC 33913, section 435 of 460 of the complete genome. Length = 10930 Score = 50.4 bits (119), Expect = 1e-06 Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 3/154 (1%) Frame = -1 Query: 49 VTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLA 108 V DI + + L+R+PGV + N G G+ + +RG N + VLIDGV L Sbjct: 3853 VAADDIGSIPDFGLGEALQRVPGVSMVVNNGRGEAQFMSLRGFNPDYNTVLIDGVALPST 3674 Query: 109 GVSGSA-DLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR--DEPGTEISAGWG 165 S L P +L Q+V+ I +A S+AIGG+ + T D G+ + Sbjct: 3673 ETSRRVQSLDVIPASLAQQVD-IYKTFNADMDSNAIGGIAALRTRSAFDHDGSFATVRAN 3497 Query: 166 SNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYD 199 ++N +Q G + G ++ T G D Sbjct: 3496 VADWEN----RRQLQGSTPSGQVQGSFSQTFGPD 3407 >AE012358 AE008922 |AE012358| Xanthomonas campestris pv. campestris str. ATCC 33913, section 266 of 460 of the complete genome. Length = 11304 Score = 49.7 bits (117), Expect = 3e-06 Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 50/265 (18%) Frame = +1 Query: 49 VTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLA 108 ++ +DI R S+ + L RLPG+ + G Q+ S+ RG + L++G + Sbjct: 8338 ISAEDIGRLPDVSIAESLARLPGLAAQRVAGRAQVISV--RGLSPDFSTTLLNGREVVST 8511 Query: 109 GVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR----DEPGTEISAGW 164 G + S + Q+P LV V + P + + G + G V++ T R +E I + Sbjct: 8512 GDNRSVEFDQYPSELVSGVTVYKTPDAGLVG-QGLSGTVDMQTARPLSYNERVIAIGGRY 8688 Query: 165 GSNS---------YQN-YDVSTQQQLGDKTRVTLLGDYAHTH------------------ 196 NS Y N ++VS Q D+T +G YAHT Sbjct: 8689 QRNSLGKAANVDPYGNRFNVSYIDQFADRTIGLTIG-YAHTDMPIQENQVGLYEPWQQVN 8865 Query: 197 ------GYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYD------ 244 G Y + G +A + L++ ++AW+ + + + Sbjct: 8866 AQRQRPGVADGVYFSDGIKALRRTGNQKRDGVMATLQYRPSNAWTSTLDAFHTEAEQIDT 9045 Query: 245 ------NRTNYDAYYSPGSPLLDTR 263 N +NY+ Y+PG + D R Sbjct: 9046 ANQFELNLSNYNGGYTPGLNITDVR 9120 >embl|AE006199|AE006199 Pasteurella multocida subsp. multocida str. Pm70 section 166 of 204 of the complete genome. Length = 10462 Score = 49.3 bits (116), Expect = 3e-06 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Frame = +1 Query: 49 VTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRG-TNASHVLVLID-GVRL- 105 +++ DI ++ +SV D L +PGV + SG LS + IRG N + V V ID G++ Sbjct: 3559 LSQSDISTFRGSSVGDFLSGVPGVIVGNKRNSGALS-VNIRGIANENRVPVWIDKGLQSV 3735 Query: 106 -NLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGW 164 + G +GS+ + L+ +VE +GP + + A GGVV + T R + W Sbjct: 3736 PSYQGYAGSSTRTYLDPDLISQVEIEKGPSLQMDATGATGGVVRVETLRWQDIIPQGKNW 3915 Query: 165 G 165 G Sbjct: 3916 G 3918 >AE012454 AE008922 |AE012454| Xanthomonas campestris pv. campestris str. ATCC 33913, section 362 of 460 of the complete genome. Length = 11605 Score = 48.5 bits (114), Expect = 6e-06 Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 30/263 (11%) Frame = +2 Query: 10 ACSVT----AFSAWAQDTSP----------------DTLVVTANRFEQPRSTVLAPTTVV 49 AC+VT A A AQD +P D++ VT + + V Sbjct: 7061 ACAVTTCLCAPLALAQDATPPAPATPPAADSAAVNLDSVFVTGTSTATTKLKSSVSVSTV 7240 Query: 50 TRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGT-----NASHVLVLIDGVR 104 + I++ S ++ R +PG+ +GG G ++I +RG A + + DG+ Sbjct: 7241 GAEAIEQSAPRSTAEIFRNIPGIRSESSGGEGN-ANIAVRGLPVASGGAKFLQLQEDGLP 7417 Query: 105 LNLAG--VSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIIT-TRDEPGTEIS 161 + G G+AD+ + R+E IRG ++ + S+A GG++N I+ T D G + Sbjct: 7418 VMEFGDIAFGNADIFLRSDFTMDRIEAIRGGSASTFTSNAPGGIINFISKTGDTEGGSVG 7597 Query: 162 AGWGSNSYQN--YDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLS 219 G + Y N D + + + + G + G Y TD G L Sbjct: 7598 VSRGLD-YDNTRIDFNYGAPFAEHWQFNIGGFFRQGDGVRDAGY-------TTDKGGQLK 7753 Query: 220 KTLYGALEHNFTDAWSGFVRGYG 242 L E +G+VR YG Sbjct: 7754 ANLTRLFE-------NGYVRVYG 7801 >AE012238 AE008922 |AE012238| Xanthomonas campestris pv. campestris str. ATCC 33913, section 146 of 460 of the complete genome. Length = 11884 Score = 48.1 bits (113), Expect = 7e-06 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 21/169 (12%) Frame = -2 Query: 6 SLLTACSVTAFSAWAQDTSPDTLVV---------------------TANRFEQPRSTVLA 44 +L A ++ A SA+AQ TS V A R + P + V Sbjct: 8880 ALAVALALPAPSAFAQQTSTSPAVTELDGVNVVGRAQTLYKSEDAAVATRTDTPLALVPQ 8701 Query: 45 PTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVR 104 V+ R+ ID + + D+ R + G+ G + +RG +VL DG+R Sbjct: 8700 SVQVLPRELIDDQAARQITDLYRSISGISFFSYAG------VTLRGFRQENVLY--DGLR 8545 Query: 105 LNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR 153 + A S + ++RVE ++GP A+YG GGV+N +T + Sbjct: 8544 GD-----PYAGFSVPQLFNIERVEVLKGPAGALYGGGEPGGVINYVTRK 8413 Score = 40.0 bits (92), Expect = 0.002 Identities = 61/265 (23%), Positives = 96/265 (36%), Gaps = 19/265 (7%) Frame = -2 Query: 348 YVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIA 407 Y++D + GL+ G F R D + G +W+ + EG A Sbjct: 7602 YLQDELTLTERWFAMAGLRWDG---FNDDNRLDGSRITGNDLSWRVGSTVVLREGINAYA 7432 Query: 408 SYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGL--TAGVNWRISGYRNDVSDLID 465 SY + + + G P DPE+S QWE + G+ + YR + S+++ Sbjct: 7431 SYASGFLPQDAANQDSSVGGP-FDPERSTQWEVGLKTALNDGGLTLNTALYRIERSNIVQ 7255 Query: 466 YDDHTLKYYNE----GKARIKGVEATANFD-TGPLTHTVSYDYVDAR------NAITDTP 514 + + N+ G R +G+E D T ++Y Y DAR N IT+ Sbjct: 7254 ANGSIVDGVNQLSALGLVRSEGLEVDLLADLTERWVLNLTYAYNDARVLDAGTNGITNAS 7075 Query: 515 LLRRAKQQVKYQLDWQLYDFD-WGITY----QYLGTRYDKDYSSY-PYQTVKMGGVSLWD 568 R A W Y+ W Y+G R + PY + + WD Sbjct: 7074 GDRFANAPRNTFGLWTRYELPAWNSAVAFGADYVGERLSLEGQRVKPYAIFDISWQTQWD 6895 Query: 569 LAVAYPVTSHLTVRGKIANLFDKDY 593 ++ + NLFDK Y Sbjct: 6894 A---------WKLQVNVKNLFDKVY 6847 >AE012517 AE008922 |AE012517| Xanthomonas campestris pv. campestris str. ATCC 33913, section 425 of 460 of the complete genome. Length = 13773 Score = 47.0 bits (110), Expect = 2e-05 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 10/220 (4%) Frame = +2 Query: 49 VTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLA 108 + +DI ++ T++ + L+R+ GV I ++ G G S + +RG LVL++G ++ A Sbjct: 1460 IVAEDIGKFPDTNLAESLQRISGVSIDRSLGEG--SRVTVRGVGPDFNLVLLNGRQMPGA 1633 Query: 109 GV-------SGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR--DEPGTE 159 + S + D + + +E + R++ + IG +NI T R D PG Sbjct: 1634 SIEESNASNSRAFDFANLASESISGIEVFKTSRAST-PTGGIGATINIKTARPLDNPGMH 1810 Query: 160 ISAGW-GSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFL 218 + G G + N ++ + Q GD + G ++ T +G+ + D Sbjct: 1811 ANVGLKGVHDASNENLPGRLQ-GDALTPEISGIFSTTSADGRFGVSLSGSYQERD----- 1972 Query: 219 SKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSP 258 +G + + W F RG + T Y PG+P Sbjct: 1973 ----FGYSQVGVPNGWRSF-RG----DSTAYGTIPQPGAP 2065 >embl|AE006069|AE006069 Pasteurella multocida subsp. multocida str. Pm70 section 36 of 204 of the complete genome. Length = 12231 Score = 46.6 bits (109), Expect = 2e-05 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 13/204 (6%) Frame = -1 Query: 2 IKKASLLTACSVTAFSAWAQDTSP-DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQST 60 +KK S+L ++ + AQ +T+VV++ E P T + + I R Q + Sbjct: 8808 LKKPSILMLTTLACSLSSAQPAETLETIVVSSQNDEIPIQDKKVGETRIGTERIRRQQMS 8629 Query: 61 SVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLN-LAGVSGSADLSQ- 118 D++R GV + + G G S +RG + + V ++IDG+R + G +L + Sbjct: 8628 DSRDLVRYETGVTVVETGRFGA-SGYAVRGVDENRVGIMIDGLRQSETLSSQGFKELFEG 8452 Query: 119 ----------FPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNS 168 I V+ +G S GS A+GG V + T+D I + + Sbjct: 8451 YGNFNNTRNGVEIENVKVATITKGADSIKSGSGALGGSV-MFETKDARDYLIDKKYHISV 8275 Query: 169 YQNYDVSTQQQLGDKTRVTLLGDY 192 + Y Q D T VTL G Y Sbjct: 8274 KRGYQTMNNQ---DLTSVTLAGRY 8212 Score = 40.0 bits (92), Expect = 0.002 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 20/212 (9%) Frame = -1 Query: 1 MIKKASLLTACSVTAFSAWAQDTSP-------DTLVVT-ANRFEQPRSTVLAPTTVVTRQ 52 + K A L+ A +A A++ DT+VV+ A+ E T +T Q Sbjct: 12084 LTKHALLMLTALTLAQTALAEEVKSTEAVEELDTIVVSGASAGEINIQEKKVGETQITTQ 11905 Query: 53 DIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLN-LAGVS 111 + + Q + D++R G+ + + G G S +RG + + V ++IDG+R + Sbjct: 11904 TLTKQQVSDSRDLVRYETGITVVETGRMGA-SGYAVRGVDENRVGIMIDGLRQSETLSSQ 11728 Query: 112 GSADLSQ-----------FPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEI 160 G +L + I V+ +G S GS A+GG V + T+D I Sbjct: 11727 GFKELFEGYGNFNNTRNGVEIENVKVATITKGADSIKSGSGALGGSV-MFETKDARDYLI 11551 Query: 161 SAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDY 192 + + Y Q D T VTL G Y Sbjct: 11550 DKDYHIGVKRGYQSMDNQ---DLTSVTLAGRY 11464 >embl|AE006112|AE006112 Pasteurella multocida subsp. multocida str. Pm70 section 79 of 204 of the complete genome. Length = 10166 Score = 45.8 bits (107), Expect = 4e-05 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 6/187 (3%) Frame = -1 Query: 1 MIKKASLLTACSVTAFS--AWAQDTSPDTLVVTANRFEQPRSTV---LAPTTVVTRQDID 55 +IK+ + L S AF+ +AQ D +VV+ + S + A + V +++ Sbjct: 5645 LIKQITYLLPWSAVAFTHVIYAQTEMLDEIVVSGAQPHLAGSAIEHYQAISNQVIKKERL 5466 Query: 56 RWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRL-NLAGVSGSA 114 + QS ++ + L GV GG S+ IRG + +L +G+ + +++ +S Sbjct: 5465 QKQSATLGNALAGELGVHSNPFGGGA--SAPIIRGQEGVRIKILQNGLDVVDMSAISPDH 5292 Query: 115 DLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDV 174 ++ + L ++VE +RG + +Y S + GVVN++ R P G+ + +D Sbjct: 5291 AVAADSL-LAEQVELVRGASTLLYSSASAAGVVNVVDKR-IPTAVPEKGYEGEIFTRFDT 5118 Query: 175 STQQQLG 181 ++Q+ G Sbjct: 5117 ASQESTG 5097 Score = 42.4 bits (98), Expect = 4e-04 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 17/131 (12%) Frame = -1 Query: 394 SAGWEFIEGYRFIASYGTSYKAPNLGQLYGF----------YGNPNLDPEKSKQWEGAFE 443 S W F YR + + + P +LY +GN NL E S E F Sbjct: 4073 SVDWLFHPNYRIGLTLSRNERLPTPMELYYHGQHLATNSFEHGNKNLRKESSNNIELGFA 3894 Query: 444 GLTAGVNWRISGYRNDV------SDLIDYDDHTLKYYNEGKARIKGVEATANFDTGP-LT 496 T ++++S Y+N DL Y + L+ Y + +A+ G+EA NF P Sbjct: 3893 YHTDKWDYKLSLYQNKFRNYIYNEDLARYGNAFLRRYTQARAKFHGIEAELNFRPTPDYQ 3714 Query: 497 HTVSYDYVDAR 507 T+ DYV R Sbjct: 3713 VTLFGDYVRGR 3681 >AE012379 AE008922 |AE012379| Xanthomonas campestris pv. campestris str. ATCC 33913, section 287 of 460 of the complete genome. Length = 10029 Score = 45.8 bits (107), Expect = 4e-05 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%) Frame = +1 Query: 47 TVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGT----NASHVLVLIDG 102 T + + I + S D+L+ +PGV +GG G ++IF+RG +A V + +DG Sbjct: 409 TTASPEQIQQAVPQSTADLLKIVPGVWAEPSGG-GTGANIFVRGMPSEGDAPFVTMQLDG 585 Query: 103 VRL----NLAGVSGSADLSQFPIA-LVQRVEYIRGPRSAVYGSDAIGGVVNIITTR--DE 155 L L+ + S + F + V+R+E +RG S ++ + G VN I + DE Sbjct: 586 SPLFPPPTLSFLENS---TLFRVDDTVERMEVLRGGSSPIFSNGQPGLTVNFIQKKGQDE 756 Query: 156 PGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDND 215 P + G+N+ + DV +G+ ++ G + T G Q D Sbjct: 757 PEGSVRLTGGNNALRRIDVFNSGPMGNGWYYSIGGFFRETDGV-------RDPQFSADKG 915 Query: 216 GFLSKTL 222 G S TL Sbjct: 916 GQFSATL 936 >AE012484 AE008922 |AE012484| Xanthomonas campestris pv. campestris str. ATCC 33913, section 392 of 460 of the complete genome. Length = 13278 Score = 45.4 bits (106), Expect = 5e-05 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%) Frame = -1 Query: 1 MIKKASLLTACSVTAFSAWA---QDTSPDTLVVTANRFEQPRSTV----LAPTTV--VTR 51 M+ + LT+ +V A A A Q T D + V + + AP+ + + Sbjct: 13041 MLAVTAALTSATVQAQQAGATFTQTTELDRVQVLGSYASSLERALNDKRYAPSVIDSIEA 12862 Query: 52 QDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNL---- 107 +DI + + +V + L+RLPGV I ++ G G + +RG + + ++G + + Sbjct: 12861 EDIGKLPAQNVAEALQRLPGVTIERDRGEGVY--VRVRGLGPNFQVTTLNGQTMAVNENV 12688 Query: 108 --AGVSGSA-DLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR 153 +G +G P LV +E I+ P +A+ AIGGVVN+ T R Sbjct: 12687 RNSGQTGRQFRFDTLPAELVSGLEVIKSPTAAL-DEGAIGGVVNVKTFR 12544 Score = 38.9 bits (89), Expect = 0.004 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 34/217 (15%) Frame = -1 Query: 426 GNPNLDPEKSKQWEGAFEGLTAGVNWRISG-YRNDVSDLIDYDDHTLKY----------Y 474 GNPNL+P ++ Q++ FE T+ + ++G + D+S + L Y Sbjct: 11094 GNPNLEPFEALQYDLTFEWYTSPSSALVAGVFYKDISRFVQTQFSNLDYQGRRYLLSSKV 10915 Query: 475 NEGKARIKGVEAT---------ANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKY 525 N GKA+++GVE A FD L +Y + D+ D + +V Sbjct: 10914 NGGKAKVQGVELAWQQVFTGLPAPFD--GLGMQANYTWTDSEANYVDGDTTFQDALEVVA 10741 Query: 526 QLDWQLYDF------DWGITYQY-------LGTRYDKDYSSYPYQTVKMGGVSLWDLAVA 572 + + L F ++Y + +GT ++ Y T+ G +S W + A Sbjct: 10740 KNSYNLVGFYEKGPLSVRLSYSWRDDIVNSVGTADIATNNTRAYGTLD-GNIS-WQITPA 10567 Query: 573 YPVTSH-LTVRGKIANLFDKDYETVYGYQTAGREYTL 608 V ++ + + G++ N++ D+ GY GR Y+L Sbjct: 10566 LAVFANAINLTGEVQNMYVGDH-LFSGYTDYGRTYSL 10459 >AE012098 AE008922 |AE012098| Xanthomonas campestris pv. campestris str. ATCC 33913, section 6 of 460 of the complete genome. Length = 10256 Score = 44.7 bits (104), Expect = 8e-05 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Frame = -1 Query: 22 DTSPDTL--VVTANRFEQPRSTVLA-----PTTV--VTRQDIDRWQSTSVNDVLRRLPGV 72 D SP TL V F+ + +A PT V V I + +V D LRR+ GV Sbjct: 8747 DASPQTLDAVQVRTSFQSQNTRAIATKQAAPTVVDSVAADSIGQLADFNVGDALRRVTGV 8568 Query: 73 DITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGV-SGSADLSQFPIALVQRVEYIR 131 + G + + +RG N ++ +LIDG + S A + P V R++ ++ Sbjct: 8567 STVEYQGEPRY--VTVRGLNGNYNSMLIDGFAFASNDIGSRQAMMDVLPANFVDRIDVVK 8394 Query: 132 GPRSAVYGSDAIGGVVNIIT 151 G AIGGV N++T Sbjct: 8393 SFLPENDGG-AIGGVTNLVT 8337 >AE012225 AE008922 |AE012225| Xanthomonas campestris pv. campestris str. ATCC 33913, section 133 of 460 of the complete genome. Length = 10544 Score = 44.3 bits (103), Expect = 1e-04 Identities = 57/232 (24%), Positives = 83/232 (35%), Gaps = 35/232 (15%) Frame = -3 Query: 418 LGQLYGFYGNPNLDPEKSKQ------WEGAFEGLTAGVNWRIS-----GYRNDVSDLIDY 466 +GQL G GNP LDP K+ Q W E L A +R GYR D + Sbjct: 810 VGQLTGSGGNPQLDPFKATQVDVSYEWYFHKEALAALAVYRKEVDSSIGYRTDREVINGL 631 Query: 467 DDHTLKYYNEGKARIKGVEAT-----------ANFDTGPLTHTVSYDYVDARNAITDTPL 515 D +N G I GVE T NF V + + A PL Sbjct: 630 DYLVSAPFNGGGGHINGVELTLQTPFYFIPHMENFGVYSNFSLVDSNLKEFSPADNPLPL 451 Query: 516 LRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPV 575 A++ + L + F+ + Y+Y + Y Y + ++ DL++ + Sbjct: 450 SGLARKTGTFDLWYSNGTFEARVGYKY-HSPYTVVYGWNAARLARLQSEGTVDLSLNWQY 274 Query: 576 TSHLTVRGKIANLFDKDYETVY-------------GYQTAGREYTLSGSYTF 614 + L R + NL ++ GYQ GR Y L +Y F Sbjct: 273 SKQLGFRFQAGNLTNEPLRAYTDNKPNRLANQDDGGYQVFGRRYALEATYKF 118 Score = 33.9 bits (76), Expect = 0.14 Identities = 52/255 (20%), Positives = 93/255 (36%), Gaps = 41/255 (16%) Frame = -3 Query: 14 TAFSAWAQDTSP------------------DTLVV-----TANRFEQPRSTVLAPTTVVT 50 TAFSA AQD++P D + V + N+ Q + V++ Sbjct: 2703 TAFSAQAQDSAPPAQPPATGTTTAQAPVTLDNITVIGQRASLNQAVQAKQMSDHVMEVIS 2524 Query: 51 RQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGV 110 ++ + + +V + L RLPGV+ T++ G+ L++ +RG + ++G + + Sbjct: 2523 ADNMGQMPNVTVAEALVRLPGVNGTRDRGNESLAT--VRGLGPRMTMGTVNGREIASSEP 2350 Query: 111 SGSADLSQFPIALVQRVE-YIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSY 169 + + FP +V V+ Y V G A ++ I+ D G G Y Sbjct: 2349 NRAVRWEVFPTEIVSTVKVYKTQSADLVAGGLAATVDISTISPLDYTGAGFVGTAGPVFY 2170 Query: 170 QN-------------YDVSTQQQLGDKTRVTLLGDYAHTHGYDVV----AYGNTGTQAQT 212 + + S + D V Y + Y + T Sbjct: 2169 DHAKDVDGYSPWGNRFGASLVHKFNDNLAVAFGATYQKQKNSNSSIGSWGYTDATTSRDV 1990 Query: 213 DNDGFLSKTLYGALE 227 D DG + T +GA + Sbjct: 1989 DGDGTVDPTPFGAAD 1945 >AE008752 AE006468 |AE008752| Salmonella typhimurium LT2, section 56 of 220 of the complete genome. Length = 20097 Score = 43.9 bits (102), Expect = 1e-04 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 8/86 (9%) Frame = -3 Query: 537 GITYQYLGTRYDKDYSSYPYQTVK--MGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDYE 594 G+ +Q R KD ++ PY T + G +L DL Y VT + +V+G I NLFDK Y+ Sbjct: 10885 GVNWQ---NRVYKDTTT-PYGTFRAEQGSYALVDLFTRYQVTKNFSVQGNINNLFDKTYD 10718 Query: 595 T------VYGYQTAGREYTLSGSYTF 614 T VYG A R +L+ +Y F Sbjct: 10717 TNIDGSIVYG---APRNVSLTANYQF 10649 Score = 32.0 bits (71), Expect = 0.55 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Frame = -3 Query: 47 TVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLN 106 ++V++Q ++ Q ++ +V+ G+ +Q S + RG + +V DG+ Sbjct: 12580 SIVSQQRMEDQQLQTLGEVMTNTLGISGSQ--ADSDRISYYSRGFEIDNYMV--DGIPTY 12413 Query: 107 LAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNII----TTRDEPGTEISA 162 D + AL +RVE +RG + G+ +N+I T+R+ G +S Sbjct: 12412 FESRWNLGD-ALTDTALYERVEVVRGANGLMTGTGNPSASINMIRKHATSREFKG-NVST 12239 Query: 163 GWGSNSYQNYDVSTQQQL 180 +GS + Q Y + Q L Sbjct: 12238 EYGSWNKQRYVMDLQSPL 12185 >AE012416 AE008922 |AE012416| Xanthomonas campestris pv. campestris str. ATCC 33913, section 324 of 460 of the complete genome. Length = 12250 Score = 43.1 bits (100), Expect = 2e-04 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 16/163 (9%) Frame = +3 Query: 47 TVVTRQDIDR-WQSTSVNDVLRRLPGVDITQNGGSG------QLSSI-FIRGTNASHVLV 98 T V+++ +DR + SVND L LPGV +T+ G Q+S F+ + + Sbjct: 9807 TTVSKEMLDRQFVLGSVNDALNELPGVVVTEADAFGSSDWGTQISMRGFVSNRDTQQIGT 9986 Query: 99 LIDGVRLNLAGVSGSADLSQF-PIALVQRVEYIRGPRS-AVYGSDAIGGVVNIITTRD-- 154 IDGV + G + ++F + ++ VE +G A ++A+GG +N +T Sbjct: 9987 TIDGVPNGGSAYGGGSKANRFIDMPDLETVEVSQGTADIASRSNEALGGTLNYLTGEPLA 10166 Query: 155 EPGTEISAGWGSNS----YQNYDVSTQQQLGDKTRVTLLGDYA 193 E + G G N Y YD LG TR + G A Sbjct: 10167EQRVRVIGGIGDNQARKYYARYDTGL---LGGHTRAWVSGSSA 10286 Score = 31.2 bits (69), Expect = 0.93 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 21/151 (13%) Frame = +3 Query: 473 YYNEGKARIKGVEATANF--DTG-PLTHTVSY---DYVDARNAITDTPL--------LRR 518 Y N G +GVEA + D G L +Y DY+ + +A DT + + + Sbjct: 11526 YENFGGVHARGVEAALGYGWDNGWRLNGAYTYNKADYLGSGDAARDTAVEITPGAQVIGQ 11705 Query: 519 AKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVT-- 576 + + DW+ + +G++ +YLG RY D S+ + GV+ +D + ++ Sbjct: 11706 PRNTLVVSADWRGDAWRFGVSGRYLGKRY-LDASN----RAALNGVTTFDANLGLELSQL 11870 Query: 577 ----SHLTVRGKIANLFDKDY-ETVYGYQTA 602 + V ++NL DK Y E V G +A Sbjct: 11871 SAQLKGMQVALNVSNLTDKRYLEGVDGSDSA 11963 >embl|AE006179|AE006179 Pasteurella multocida subsp. multocida str. Pm70 section 146 of 204 of the complete genome. Length = 11375 Score = 42.7 bits (99), Expect = 3e-04 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Frame = -2 Query: 380 DDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGF----------YGNPN 429 D S R ++ + W Y +Y + + P +LY +GN N Sbjct: 4162 DFASYHDRATSYSGAISWNMTPDYTLSLTYSHNERHPTPMELYYHGKHLATVSFEHGNRN 3983 Query: 430 LDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLI------DYDDHTLKYYNEGKARIKG 483 L E S WE L ++++++ Y ND + I + +L YN+ KA+ G Sbjct: 3982 LKKEVSDNWEVGLAYLGDKLSYKVNVYYNDFKNRIFNQTLNKSGNLSLNRYNQSKAKYYG 3803 Query: 484 VEATANFDTGPLTHTVSY-DYVDARNAITDTP 514 VE ++ P H + DYV R + D P Sbjct: 3802 VEGRIDYALTPELHMGLFGDYV--RGKLYDLP 3713 Score = 30.8 bits (68), Expect = 1.2 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Frame = -2 Query: 48 VVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNL 107 +V++Q + ST N + L + N G S+ +RG + +L +G Sbjct: 5569 LVSKQKLKTGSSTLGNALAGEL---SVHSNQFGGGSSAPVVRGQEGVRLKILQNG----- 5414 Query: 108 AGVSGSADLSQFP--------IALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR 153 S D+SQ L ++VE +RG + +Y + + GV+N++ R Sbjct: 5413 ---SDVIDMSQLSPDHAIGVDTLLAEQVEIVRGASTLLYANASPAGVINVVDKR 5261 >AE012310 AE008922 |AE012310| Xanthomonas campestris pv. campestris str. ATCC 33913, section 218 of 460 of the complete genome. Length = 10787 Score = 41.6 bits (96), Expect = 7e-04 Identities = 131/668 (19%), Positives = 243/668 (36%), Gaps = 81/668 (12%) Frame = +2 Query: 7 LLTACSVTAFSAWAQDTSPDTLVVTAN-RFEQPRSTVLAPTTVVTRQDI---DRWQSTSV 62 L+ A AF+ A+ S D+ V + Q LA V+T D+ D+ ++ +V Sbjct: 4859 LVPAMLAAAFANDARAESGDSAVTMGSVDVRQGGRGQLAANRVLTSVDVLGGDQVENKNV 5038 Query: 63 N---DVLRRLPGVDITQNGGSGQLSSIFIRGTNA----SHVLVLIDGVRLNLAGVSGSAD 115 ++L ++PG+ +T+ + R N + + +LIDGV N+ + Sbjct: 5039 MNSWELLGQMPGIQLTETRQGTESGKATFRAFNGEGYINGIKILIDGVPSNVNSGNQRFI 5218 Query: 116 LSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWG---------- 165 FP+ + +E +RG YG IGG +N T + T+ +G Sbjct: 5219 DMVFPLE-IDYIEVVRGTNDPRYGLHNIGGNINFGTRQGGNYTDGRLTYGSFDTREAQLA 5395 Query: 166 ------------------SNSYQNYDVSTQQQLGDKTRV------TLLGDYAHTHGYDVV 201 SN Y+++D S + LG K V LG A + ++ Sbjct: 5396 VGREADGFAQNYFVGVQDSNGYRDHDTSQKYSLGGKWFVGSDADTAKLGLVARVYHHEAD 5575 Query: 202 AYG-NTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLL 260 G T + TD +K + + G D R + +++ Sbjct: 5576 EPGFMTAEELATDRTASAAKNANDGADRDMRHL------GVHLDLRLSDTLHFN------ 5719 Query: 261 DTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQW 320 KLY S++ R + + T + + +D S+ T + + T++ Sbjct: 5720 --NKLYYNSYEETRR----VTFTSFPTGNAPRQQREWDEKQTGMLSTITWRQSELLTLEG 5881 Query: 321 ANNV-IVGHGSIGAGVDWQKQT---TTPGTGYVEDGYDQRNTGIYLTG-LQQVGDFTFEG 375 NV +G + T P +D Y N G Y+ L Sbjct: 5882 GANVEHQDNGYRRLRFAYSVPTDFNAPPARAQNDDRYTLENVGAYVQAVLTPTAALKIVP 6061 Query: 376 AARSDDNSQFGR----------HGTW----QTSAGWEFIEGYRFIASYGTSYK--APNLG 419 A R D S R H W + S + F G A++G +++ + Sbjct: 6062 AFRVDRFSGDTRLPGGVTAPLQHTGWIEQPKLSVVYSFNPGLHVYANWGKTFQVLTGSTA 6241 Query: 420 QLYGFYGNPNLDPE-KSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGK 478 Y G P + Q G AG R++ ++ D +D + T G+ Sbjct: 6242 PAYLTAGQETFRPSINTGQEVGIKFTPAAGTEARLAVWQQDATDEVANMPATGTTVGLGE 6421 Query: 479 ARIKGVEATANFDTGPLTHTV---SYDYVDAR---------NAITDTPLLRRAKQQVKYQ 526 R +GV+ + G H V S+ Y +A+ +A+ ++ + Sbjct: 6422 TRRRGVDLQVSSHLG--EHWVLWASHAYQEAKVISAFTTAGDALAGNEVIATPRYISNIG 6595 Query: 527 LDWQ-LYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKI 585 D++ + +G+ + G Y ++ ++ K GG +L D++ Y ++ +++ ++ Sbjct: 6596 ADYRPNAQWTFGVQGRMQGDYYIEERNTQG----KFGGFALVDMSARYQLSERISLDLQV 6763 Query: 586 ANLFDKDY 593 NLF ++Y Sbjct: 6764 RNLFGREY 6787 >AE012200 AE008922 |AE012200| Xanthomonas campestris pv. campestris str. ATCC 33913, section 108 of 460 of the complete genome. Length = 10786 Score = 40.4 bits (93), Expect = 0.002 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 11/162 (6%) Frame = +2 Query: 26 DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDV---LRRLPGVDITQNGGSGQ 82 D + VT R + V +V+ + +D STS +D+ + P ++I + G Sbjct: 1646 DAVKVTVERRSEDSKDVPVSASVLRPEFLDAI-STSGSDIRVLAGKAPSLNIESSNGR-V 1819 Query: 83 LSSIFIRG-------TNASHVLVLI-DGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPR 134 ++IRG T AS + L+ D V V +A L FPI ++ +E +RGP+ Sbjct: 1820 FPRVYIRGYGNTDFNTYASQPVSLVYDDV------VQENAFLKGFPIFDLEGLEVLRGPQ 1981 Query: 135 SAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVST 176 ++G + GVV + + P + G+ S SY Y T Sbjct: 1982 GTLFGRNTPAGVVKFNSVK--PTIGANDGYASLSYGTYGTMT 2101 >embl|AE006111|AE006111 Pasteurella multocida subsp. multocida str. Pm70 section 78 of 204 of the complete genome. Length = 10062 Score = 39.7 bits (91), Expect = 0.003 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Frame = +2 Query: 12 SVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVV-TRQDIDRWQSTSVNDVLRRLP 70 S AF +AQ+T+ + +T +PT + + I D++R Sbjct: 7685 SFIAFPLYAQETT-ELEQITVQESATAEVNKTSPTVISKSATTIQNEMVRDTRDLVRYTT 7861 Query: 71 GVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRL------NLAGVSGSADLSQFPI--A 122 V I+ NG L +RG + V + IDGV L +L G+ + S+ I Sbjct: 7862 DVGISDNGRF--LKGFAMRGVEDNRVGISIDGVSLPDSEENSLYARYGNFNNSRLSIDPE 8035 Query: 123 LVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAG 163 L+Q ++ +RG S GS ++GG VN T +P + AG Sbjct: 8036 LIQTIDIVRGSDSFNAGSGSLGGGVNYNTL--DPQHIVKAG 8152 >AE012438 AE008922 |AE012438| Xanthomonas campestris pv. campestris str. ATCC 33913, section 346 of 460 of the complete genome. Length = 10968 Score = 39.3 bits (90), Expect = 0.003 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Frame = -3 Query: 47 TVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLN 106 TV+TR +D S+ DVL + G+ + Q+ + + RG + DG+ Sbjct: 7726 TVITRDRMDDQNLQSITDVLNNVTGISVAQS--DSERLEFYARGFYIDN--YQFDGIPAY 7559 Query: 107 LAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNII----TTRDEPGTEISA 162 + D S +AL RVE +RG + GS +N++ +R+ GT +S Sbjct: 7558 MEQAWSYGD-SALDVALYDRVEVVRGATGLLTGSGNPSASINLVRKHALSREFTGT-VSV 7385 Query: 163 GWG 165 G G Sbjct: 7384 GGG 7376 >embl|AE006167|AE006167 Pasteurella multocida subsp. multocida str. Pm70 section 134 of 204 of the complete genome. Length = 11549 Score = 38.9 bits (89), Expect = 0.004 Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Frame = +2 Query: 41 TVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLI 100 T LA ++++ +D +S ++ + L + GV G + IRG + V ++ Sbjct: 2264 TALASQVRISKEKLDNVKSGTLGETLTNVSGVQNNYFGPNA--GRPMIRGLSGQRVQIMQ 2437 Query: 101 DGVRLN-LAGVSGSADLSQFPIALVQRVEYIR-GPRSAVYGSDAIGGVVNI 149 + + ++ +A VS + +S +A V+ ++ I+ G S +YG +IGG VN+ Sbjct: 2438 NDMPIHDMAAVSSNLAISA-NLASVKEIQIIKSGVASVLYGGKSIGGAVNL 2587 >embl|AE006149|AE006149 Pasteurella multocida subsp. multocida str. Pm70 section 116 of 204 of the complete genome. Length = 10120 Score = 38.1 bits (87), Expect = 0.008 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Frame = -1 Query: 58 QSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVR-LNLAGVSGSADL 116 + +++ D L G+ +Q GG S+ IRG + VL G L+++ +S + Sbjct: 2287 RGSNLGDALSSELGIHASQFGGGA--SAPVIRGQEGKRIKVLSSGNETLDMSAMSPDHAV 2114 Query: 117 SQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNI----ITTRDEPGTEISAGWGSNSYQN 171 + + L ++VE +RG + +Y S GVVN+ I T + G E G + S N Sbjct: 2113 AVDSL-LAKKVEILRGANTLLYSSGNAAGVVNVVDNKIPTAEVVGVEGEVGLRTGSADN 1940 >AE012111 AE008922 |AE012111| Xanthomonas campestris pv. campestris str. ATCC 33913, section 19 of 460 of the complete genome. Length = 11732 Score = 37.4 bits (85), Expect = 0.013 Identities = 43/160 (26%), Positives = 69/160 (43%) Frame = +2 Query: 5 ASLLTACSVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVND 64 A L A SV + AQ + L +T E P+S +V+ Q ++ S++D Sbjct: 9401 AKTLDAVSVNGTVSRAQPATTTRLPLTLQ--ETPQSV-----SVIGLQRLEDESLFSIDD 9559 Query: 65 VLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALV 124 V+R + GV+++ L F RG + V DG L SG+ + ++ Sbjct: 9560 VMRNVTGVNVSFYDTQRPL--YFARGFQITDFQV--DG----LPTYSGATN-QEYDTVFY 9712 Query: 125 QRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGW 164 R+E IRG + G+ VN++ R PG E A + Sbjct: 9713 DRIEVIRGANGLLTGAGIPSATVNLL--RKRPGKEFDASF 9826 >AE012492 AE008922 |AE012492| Xanthomonas campestris pv. campestris str. ATCC 33913, section 400 of 460 of the complete genome. Length = 11272 Score = 37.0 bits (84), Expect = 0.017 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Frame = -2 Query: 122 ALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRD----EPGTEISAG 163 A Q VE I+GP SA+YG GG VNI+T + + ++SAG Sbjct: 7065 ANTQSVEVIKGPASALYGRGEPGGAVNIVTKKPLFDAQHSVDLSAG 6928 >AE012201 AE008922 |AE012201| Xanthomonas campestris pv. campestris str. ATCC 33913, section 109 of 460 of the complete genome. Length = 10790 Score = 35.0 bits (79), Expect = 0.065 Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 45/199 (22%) Frame = +1 Query: 46 TTVVTRQDIDRWQSTSVNDVLRRLPGVDI---TQN-GGSGQLSSIFIRGTNASHVLVLID 101 T V++ D+ +++ + LRR+PG+ + T N + ++ +RG S+ V ID Sbjct: 1855 TDVISATDVRALPDSTIVEALRRVPGLSVLPATDNEHPRDEAATPVLRGLGPSYNNVTID 2034 Query: 102 GVRL--------NLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIIT-- 151 G+ + L ++ L P ++V ++ ++ +A +A GG +N+ T Sbjct: 2035 GLTIASPGTPNGTLGSITRGVRLDLLPASIVSELQVVK-TFTADLDPNATGGAINLKTRS 2211 Query: 152 --------------------------TRDEPGTEISA----GWGSNSYQNYDVSTQ-QQL 180 +D+PG ++A +GS + +S Q L Sbjct: 2212 AFENGGKPFFSAEAALGHANDVGKPRDQDDPGYRLNATGSRTFGSEQQYGFTLSANYQTL 2391 Query: 181 GDKTRVTLLGDYAHTHGYD 199 T + D H YD Sbjct: 2392 SSYTETHMTTDMVHYGFYD 2448 >AE012217 AE008922 |AE012217| Xanthomonas campestris pv. campestris str. ATCC 33913, section 125 of 460 of the complete genome. Length = 11498 Score = 34.7 bits (78), Expect = 0.085 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 13/188 (6%) Frame = +1 Query: 20 AQDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLR---RLPGVDITQ 76 A T+ DT+ VTA EQ V VV + + + + +L R+PG Sbjct: 373 ASPTALDTVTVTAEHREQNLQDVPVSVGVVQGAAMREYTAGGDDTLLALSGRVPGFYAET 552 Query: 77 NGGSGQLSSIFIRGTN--------ASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVE 128 G +IRG + V ++ D V L L P+ V +VE Sbjct: 553 TTGR-IFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLE------HVVLKSNPVYDVDQVE 711 Query: 129 YIRGPRSAVYGSDAIGGVVNIITTR--DEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRV 186 +RGP+ ++G + G+V T + D ++A +GS + + D + D Sbjct: 712 VLRGPQGTLFGRNTTAGIVKFDTVKPGDTYTGRVNASYGSYNTISLDGGFGGPINDVLSF 891 Query: 187 TLLGDYAH 194 + Y H Sbjct: 892 RVSALYQH 915 >AE012277 AE008922 |AE012277| Xanthomonas campestris pv. campestris str. ATCC 33913, section 185 of 460 of the complete genome. Length = 11937 Score = 29.6 bits (65), Expect = 2.7 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 11/125 (8%) Frame = -2 Query: 52 QDIDRWQSTSVNDVLRRLPGVDITQN--GGSGQLSSIFIRGTNASHVLVLIDGVRLNLAG 109 Q+ D + V VL RL G+ + Q G + + + +G A HV++L +R+ AG Sbjct: 9659 QEADHRGAVEVVLVLHRLHGLGLDQEVAGKANRTPVVARQGQEARHVVLLALHLRVVQAG 9480 Query: 110 V--SGSADLSQFPIAL----VQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPG---TEI 160 V + + + FP L +R++ RG R V + GG +++ R++ G ++ Sbjct: 9479 VAFATAPEHVVFPAQLHRGIDRRLDLHRGARHDVEVRIS-GGTIHVARVREQIGGAPQQL 9303 Query: 161 SAGWG 165 AG G Sbjct: 9302 DAGVG 9288 >embl|AE006036|AE006036 Pasteurella multocida subsp. multocida str. Pm70 section 3 of 204 of the complete genome. Length = 8247 Score = 28.9 bits (63), Expect = 4.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 397 WEFIEGYRFIASYGTSYKAPNLGQLY 422 W+FI +ASYG +Y A LGQL+ Sbjct: 4191 WDFIA---MVASYGIAYHAKELGQLF 4259 >AE012444 AE008922 |AE012444| Xanthomonas campestris pv. campestris str. ATCC 33913, section 352 of 460 of the complete genome. Length = 12739 Score = 28.9 bits (63), Expect = 4.6 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = -3 Query: 251 AYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSH 291 A+ SP + L+ Y W A R +L+K L +SH Sbjct: 9716 AFTSPSAALVSADPTYESGWRAASRNGAKLVKVPLRKDFSH 9594 >AE012337 AE008922 |AE012337| Xanthomonas campestris pv. campestris str. ATCC 33913, section 245 of 460 of the complete genome. Length = 11412 Score = 28.9 bits (63), Expect = 4.6 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = +1 Query: 84 SSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAI 143 SS + GT A V+ + + G++G+ P + VE + PR + G A+ Sbjct: 7690 SSGRVAGTAAGGVVAAGTALDVEATGLAGAKS----PGHSITSVEAL--PRVCICGFSAV 7851 Query: 144 GGVVNIITTRDEPGT 158 GV + TTR PGT Sbjct: 7852 TGVASSNTTRKVPGT 7896 >AE012285 AE008922 |AE012285| Xanthomonas campestris pv. campestris str. ATCC 33913, section 193 of 460 of the complete genome. Length = 12749 Score = 28.9 bits (63), Expect = 4.6 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 56 RWQSTSVNDVLRRLPGVDITQNGG-SGQLSSIFIRGTNASHVLVLIDG 102 R Q D L+RL I + QL S+F+R SH L+DG Sbjct: 5242 RRQELIARDALKRLLRPGIAERAAVQDQLQSLFVRQARLSHPAALLDG 5385 >AE012127 AE008922 |AE012127| Xanthomonas campestris pv. campestris str. ATCC 33913, section 35 of 460 of the complete genome. Length = 10675 Score = 28.9 bits (63), Expect = 4.6 Identities = 46/215 (21%), Positives = 78/215 (36%), Gaps = 26/215 (12%) Frame = -1 Query: 322 NNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDD 381 + +++ HG GV W + + + +++ ++ N Q ++ Sbjct: 8125 SRLVLVHGYCSNGV-WPEAQFSNASSFIDAKQNRSNDQFAQRLAQFASQWSSFATVAHSQ 7949 Query: 382 NSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFYG---------NPNLDP 432 H +G + G R + S GT Y+ NL + G N +L Sbjct: 7948 GGMAALHLYTYYWSGLDNATGGRVMQSVGTPYQGTNLSGILAAVGSWFGVGCGSNTDLTY 7769 Query: 433 EKSKQWEGA-----------FEGLTAGVNWRISGYRNDVSDLI--DYDDHTLKYYNEGKA 479 + +K W + A NW + Y N SDL+ D +D T++ N A Sbjct: 7768 DGAKAWLAGIPADARAKVNYYTTSFAKTNWYTNDYCNAASDLVLNDPEDGTVEQAN---A 7598 Query: 480 RIKGVEATANFDTGPLTHTVSYD---YVDA-RNAI 510 ++ G TG T D Y+DA RNA+ Sbjct: 7597 QLPG-GVNRGHTTGQCHTTGMRDPAQYLDASRNAV 7496 >AE012290 AE008922 |AE012290| Xanthomonas campestris pv. campestris str. ATCC 33913, section 198 of 460 of the complete genome. Length = 11880 Score = 28.1 bits (61), Expect = 7.9 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -2 Query: 484 VEATANFDTGPLTHTVSYDYVDARNAITD--TPLLRRAKQQVKYQLDWQLYDFDWG 537 V +TAN +TG L H + RN IT R + Q+ +++D + D+G Sbjct: 5441 VRSTANDETGRLLHAMDRMQSQVRNLITAQLNMAKRHEEGQISFRMDAAAFPGDFG 5274 >AE012121 AE008922 |AE012121| Xanthomonas campestris pv. campestris str. ATCC 33913, section 29 of 460 of the complete genome. Length = 10770 Score = 28.1 bits (61), Expect = 7.9 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Frame = -3 Query: 130 IRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLL 189 ++ P + +D + GV+ T R E+ A + D S + + TL+ Sbjct: 967 VQAPLPPRHAADELYGVIPADTRRPYDVREVIA-------RIVDDSRLDEFKPRYGSTLV 809 Query: 190 GDYAHTHGYDVVAYGNTG---TQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDN 245 +AH HGY V N G +++ F+ + F +GF+ G Y++ Sbjct: 808 TGFAHLHGYPVGIIANNGILFSESALKGAHFIELCTQRGIPLVFLQNITGFMVGRKYEH 632 Database: 3g Posted date: Nov 7, 2007 12:58 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.315 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 9,146,320 Number of extensions: 142052 Number of successful extensions: 797 Number of sequences better than 10.0: 66 Number of HSP's gapped: 757 Number of HSP's successfully gapped: 90 Length of query: 614 Length of database: 4,081,295 Length adjustment: 99 Effective length of query: 515 Effective length of database: 3,993,779 Effective search space: 2056796185 Effective search space used: 2056796185 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)