TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sw|P06129|BTUB_ECOLI Vitamin B12 transporter btuB precursor (Cobalamin receptor) (Outer membrane cobalamin translocator). (614 letters) Database: pm 204 sequences; 2,269,587 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value embl|AE006199|AE006199 Pasteurella multocida subsp. multocida st... 49 6e-07 embl|AE006069|AE006069 Pasteurella multocida subsp. multocida st... 47 4e-06 embl|AE006112|AE006112 Pasteurella multocida subsp. multocida st... 46 7e-06 embl|AE006179|AE006179 Pasteurella multocida subsp. multocida st... 43 6e-05 embl|AE006111|AE006111 Pasteurella multocida subsp. multocida st... 40 5e-04 embl|AE006167|AE006167 Pasteurella multocida subsp. multocida st... 39 8e-04 embl|AE006149|AE006149 Pasteurella multocida subsp. multocida st... 38 0.001 embl|AE006036|AE006036 Pasteurella multocida subsp. multocida st... 29 0.88 embl|AE006234|AE006234 Pasteurella multocida subsp. multocida st... 26 5.7 embl|AE006227|AE006227 Pasteurella multocida subsp. multocida st... 26 7.4 embl|AE006183|AE006183 Pasteurella multocida subsp. multocida st... 25 9.7 >embl|AE006199|AE006199 Pasteurella multocida subsp. multocida str. Pm70 section 166 of 204 of the complete genome. Length = 10462 Score = 49.3 bits (116), Expect = 6e-07 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Frame = +1 Query: 49 VTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRG-TNASHVLVLID-GVRL- 105 +++ DI ++ +SV D L +PGV + SG LS + IRG N + V V ID G++ Sbjct: 3559 LSQSDISTFRGSSVGDFLSGVPGVIVGNKRNSGALS-VNIRGIANENRVPVWIDKGLQSV 3735 Query: 106 -NLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGW 164 + G +GS+ + L+ +VE +GP + + A GGVV + T R + W Sbjct: 3736 PSYQGYAGSSTRTYLDPDLISQVEIEKGPSLQMDATGATGGVVRVETLRWQDIIPQGKNW 3915 Query: 165 G 165 G Sbjct: 3916 G 3918 >embl|AE006069|AE006069 Pasteurella multocida subsp. multocida str. Pm70 section 36 of 204 of the complete genome. Length = 12231 Score = 46.6 bits (109), Expect = 4e-06 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 13/204 (6%) Frame = -1 Query: 2 IKKASLLTACSVTAFSAWAQDTSP-DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQST 60 +KK S+L ++ + AQ +T+VV++ E P T + + I R Q + Sbjct: 8808 LKKPSILMLTTLACSLSSAQPAETLETIVVSSQNDEIPIQDKKVGETRIGTERIRRQQMS 8629 Query: 61 SVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLN-LAGVSGSADLSQ- 118 D++R GV + + G G S +RG + + V ++IDG+R + G +L + Sbjct: 8628 DSRDLVRYETGVTVVETGRFGA-SGYAVRGVDENRVGIMIDGLRQSETLSSQGFKELFEG 8452 Query: 119 ----------FPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNS 168 I V+ +G S GS A+GG V + T+D I + + Sbjct: 8451 YGNFNNTRNGVEIENVKVATITKGADSIKSGSGALGGSV-MFETKDARDYLIDKKYHISV 8275 Query: 169 YQNYDVSTQQQLGDKTRVTLLGDY 192 + Y Q D T VTL G Y Sbjct: 8274 KRGYQTMNNQ---DLTSVTLAGRY 8212 Score = 40.0 bits (92), Expect = 4e-04 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 20/212 (9%) Frame = -1 Query: 1 MIKKASLLTACSVTAFSAWAQDTSP-------DTLVVT-ANRFEQPRSTVLAPTTVVTRQ 52 + K A L+ A +A A++ DT+VV+ A+ E T +T Q Sbjct: 12084 LTKHALLMLTALTLAQTALAEEVKSTEAVEELDTIVVSGASAGEINIQEKKVGETQITTQ 11905 Query: 53 DIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLN-LAGVS 111 + + Q + D++R G+ + + G G S +RG + + V ++IDG+R + Sbjct: 11904 TLTKQQVSDSRDLVRYETGITVVETGRMGA-SGYAVRGVDENRVGIMIDGLRQSETLSSQ 11728 Query: 112 GSADLSQ-----------FPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEI 160 G +L + I V+ +G S GS A+GG V + T+D I Sbjct: 11727 GFKELFEGYGNFNNTRNGVEIENVKVATITKGADSIKSGSGALGGSV-MFETKDARDYLI 11551 Query: 161 SAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDY 192 + + Y Q D T VTL G Y Sbjct: 11550 DKDYHIGVKRGYQSMDNQ---DLTSVTLAGRY 11464 >embl|AE006112|AE006112 Pasteurella multocida subsp. multocida str. Pm70 section 79 of 204 of the complete genome. Length = 10166 Score = 45.8 bits (107), Expect = 7e-06 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 6/187 (3%) Frame = -1 Query: 1 MIKKASLLTACSVTAFS--AWAQDTSPDTLVVTANRFEQPRSTV---LAPTTVVTRQDID 55 +IK+ + L S AF+ +AQ D +VV+ + S + A + V +++ Sbjct: 5645 LIKQITYLLPWSAVAFTHVIYAQTEMLDEIVVSGAQPHLAGSAIEHYQAISNQVIKKERL 5466 Query: 56 RWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRL-NLAGVSGSA 114 + QS ++ + L GV GG S+ IRG + +L +G+ + +++ +S Sbjct: 5465 QKQSATLGNALAGELGVHSNPFGGGA--SAPIIRGQEGVRIKILQNGLDVVDMSAISPDH 5292 Query: 115 DLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDV 174 ++ + L ++VE +RG + +Y S + GVVN++ R P G+ + +D Sbjct: 5291 AVAADSL-LAEQVELVRGASTLLYSSASAAGVVNVVDKR-IPTAVPEKGYEGEIFTRFDT 5118 Query: 175 STQQQLG 181 ++Q+ G Sbjct: 5117 ASQESTG 5097 Score = 42.4 bits (98), Expect = 8e-05 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 17/131 (12%) Frame = -1 Query: 394 SAGWEFIEGYRFIASYGTSYKAPNLGQLYGF----------YGNPNLDPEKSKQWEGAFE 443 S W F YR + + + P +LY +GN NL E S E F Sbjct: 4073 SVDWLFHPNYRIGLTLSRNERLPTPMELYYHGQHLATNSFEHGNKNLRKESSNNIELGFA 3894 Query: 444 GLTAGVNWRISGYRNDV------SDLIDYDDHTLKYYNEGKARIKGVEATANFDTGP-LT 496 T ++++S Y+N DL Y + L+ Y + +A+ G+EA NF P Sbjct: 3893 YHTDKWDYKLSLYQNKFRNYIYNEDLARYGNAFLRRYTQARAKFHGIEAELNFRPTPDYQ 3714 Query: 497 HTVSYDYVDAR 507 T+ DYV R Sbjct: 3713 VTLFGDYVRGR 3681 >embl|AE006179|AE006179 Pasteurella multocida subsp. multocida str. Pm70 section 146 of 204 of the complete genome. Length = 11375 Score = 42.7 bits (99), Expect = 6e-05 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Frame = -2 Query: 380 DDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGF----------YGNPN 429 D S R ++ + W Y +Y + + P +LY +GN N Sbjct: 4162 DFASYHDRATSYSGAISWNMTPDYTLSLTYSHNERHPTPMELYYHGKHLATVSFEHGNRN 3983 Query: 430 LDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLI------DYDDHTLKYYNEGKARIKG 483 L E S WE L ++++++ Y ND + I + +L YN+ KA+ G Sbjct: 3982 LKKEVSDNWEVGLAYLGDKLSYKVNVYYNDFKNRIFNQTLNKSGNLSLNRYNQSKAKYYG 3803 Query: 484 VEATANFDTGPLTHTVSY-DYVDARNAITDTP 514 VE ++ P H + DYV R + D P Sbjct: 3802 VEGRIDYALTPELHMGLFGDYV--RGKLYDLP 3713 Score = 30.8 bits (68), Expect = 0.23 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Frame = -2 Query: 48 VVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNL 107 +V++Q + ST N + L + N G S+ +RG + +L +G Sbjct: 5569 LVSKQKLKTGSSTLGNALAGEL---SVHSNQFGGGSSAPVVRGQEGVRLKILQNG----- 5414 Query: 108 AGVSGSADLSQFP--------IALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR 153 S D+SQ L ++VE +RG + +Y + + GV+N++ R Sbjct: 5413 ---SDVIDMSQLSPDHAIGVDTLLAEQVEIVRGASTLLYANASPAGVINVVDKR 5261 >embl|AE006111|AE006111 Pasteurella multocida subsp. multocida str. Pm70 section 78 of 204 of the complete genome. Length = 10062 Score = 39.7 bits (91), Expect = 5e-04 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Frame = +2 Query: 12 SVTAFSAWAQDTSPDTLVVTANRFEQPRSTVLAPTTVV-TRQDIDRWQSTSVNDVLRRLP 70 S AF +AQ+T+ + +T +PT + + I D++R Sbjct: 7685 SFIAFPLYAQETT-ELEQITVQESATAEVNKTSPTVISKSATTIQNEMVRDTRDLVRYTT 7861 Query: 71 GVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRL------NLAGVSGSADLSQFPI--A 122 V I+ NG L +RG + V + IDGV L +L G+ + S+ I Sbjct: 7862 DVGISDNGRF--LKGFAMRGVEDNRVGISIDGVSLPDSEENSLYARYGNFNNSRLSIDPE 8035 Query: 123 LVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAG 163 L+Q ++ +RG S GS ++GG VN T +P + AG Sbjct: 8036 LIQTIDIVRGSDSFNAGSGSLGGGVNYNTL--DPQHIVKAG 8152 >embl|AE006167|AE006167 Pasteurella multocida subsp. multocida str. Pm70 section 134 of 204 of the complete genome. Length = 11549 Score = 38.9 bits (89), Expect = 8e-04 Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Frame = +2 Query: 41 TVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLI 100 T LA ++++ +D +S ++ + L + GV G + IRG + V ++ Sbjct: 2264 TALASQVRISKEKLDNVKSGTLGETLTNVSGVQNNYFGPNA--GRPMIRGLSGQRVQIMQ 2437 Query: 101 DGVRLN-LAGVSGSADLSQFPIALVQRVEYIR-GPRSAVYGSDAIGGVVNI 149 + + ++ +A VS + +S +A V+ ++ I+ G S +YG +IGG VN+ Sbjct: 2438 NDMPIHDMAAVSSNLAISA-NLASVKEIQIIKSGVASVLYGGKSIGGAVNL 2587 >embl|AE006149|AE006149 Pasteurella multocida subsp. multocida str. Pm70 section 116 of 204 of the complete genome. Length = 10120 Score = 38.1 bits (87), Expect = 0.001 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Frame = -1 Query: 58 QSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVR-LNLAGVSGSADL 116 + +++ D L G+ +Q GG S+ IRG + VL G L+++ +S + Sbjct: 2287 RGSNLGDALSSELGIHASQFGGGA--SAPVIRGQEGKRIKVLSSGNETLDMSAMSPDHAV 2114 Query: 117 SQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNI----ITTRDEPGTEISAGWGSNSYQN 171 + + L ++VE +RG + +Y S GVVN+ I T + G E G + S N Sbjct: 2113 AVDSL-LAKKVEILRGANTLLYSSGNAAGVVNVVDNKIPTAEVVGVEGEVGLRTGSADN 1940 >embl|AE006036|AE006036 Pasteurella multocida subsp. multocida str. Pm70 section 3 of 204 of the complete genome. Length = 8247 Score = 28.9 bits (63), Expect = 0.88 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 397 WEFIEGYRFIASYGTSYKAPNLGQLY 422 W+FI +ASYG +Y A LGQL+ Sbjct: 4191 WDFIA---MVASYGIAYHAKELGQLF 4259 >embl|AE006234|AE006234 Pasteurella multocida subsp. multocida str. Pm70 section 201 of 204 of the complete genome. Length = 14505 Score = 26.2 bits (56), Expect = 5.7 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 8 LTACSVTAFSAWAQDTSPDT 27 LT CS+T W +TSP T Sbjct: 390 LTFCSITTLKKWLCNTSPST 331 >embl|AE006227|AE006227 Pasteurella multocida subsp. multocida str. Pm70 section 194 of 204 of the complete genome. Length = 10742 Score = 25.8 bits (55), Expect = 7.4 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = +1 Query: 533 DFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLW---DLAVAYPVTSHLTVRGKIANLF 589 ++D + Y Y D D+S+Y + V + +W + YP+ S + G Sbjct: 7810 NYDLCLCYDYRDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCD 7989 Query: 590 DKDYETVYGYQTAGREYTLSG 610 D+ YG A TLSG Sbjct: 7990 DQ-----YGIPEAIFAGTLSG 8037 >embl|AE006183|AE006183 Pasteurella multocida subsp. multocida str. Pm70 section 150 of 204 of the complete genome. Length = 13350 Score = 25.4 bits (54), Expect = 9.7 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = -2 Query: 416 PNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLID 465 P L + Y +LDP K W A G + ISGY ++ S+ ++ Sbjct: 4637 PLLSEAEIAYQQKSLDPMKGSLWFAAIAGFWLFFSGIISGYFDNRSNYLN 4488 Database: pm Posted date: Nov 3, 2005 2:11 AM Number of letters in database: 2,269,587 Number of sequences in database: 204 Lambda K H 0.315 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,454,908 Number of Sequences: 204 Number of extensions: 21233 Number of successful extensions: 86 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 29 length of query: 614 length of database: 756,529 effective HSP length: 88 effective length of query: 526 effective length of database: 738,577 effective search space: 388491502 effective search space used: 388491502 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (25.4 bits)