MEGABLAST 2.2.15 [Oct-15-2006] Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: ss 272 sequences; 3,008,365 total letters Searching..................................................done Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome. (76 letters) Score E Sequences producing significant alignments: (bits) Value AE006716 AE006641 |AE006716| Sulfolobus solfataricus P2 section ... 28 0.59 AE006646 AE006641 |AE006646| Sulfolobus solfataricus P2 section ... 28 0.59 AE006821 AE006641 |AE006821| Sulfolobus solfataricus P2 section ... 26 2.3 AE006751 AE006641 |AE006751| Sulfolobus solfataricus P2 section ... 26 2.3 AE006653 AE006641 |AE006653| Sulfolobus solfataricus P2 section ... 26 2.3 AE006908 AE006641 |AE006908| Sulfolobus solfataricus P2 section ... 24 9.1 AE006903 AE006641 |AE006903| Sulfolobus solfataricus P2 section ... 24 9.1 AE006899 AE006641 |AE006899| Sulfolobus solfataricus P2 section ... 24 9.1 AE006864 AE006641 |AE006864| Sulfolobus solfataricus P2 section ... 24 9.1 AE006802 AE006641 |AE006802| Sulfolobus solfataricus P2 section ... 24 9.1 AE006778 AE006641 |AE006778| Sulfolobus solfataricus P2 section ... 24 9.1 AE006749 AE006641 |AE006749| Sulfolobus solfataricus P2 section ... 24 9.1 AE006656 AE006641 |AE006656| Sulfolobus solfataricus P2 section ... 24 9.1 >AE006716 AE006641 |AE006716| Sulfolobus solfataricus P2 section 75 of 272 of the complete genome. Length = 13396 Score = 28.2 bits (14), Expect = 0.59 Identities = 14/14 (100%) Strand = Plus / Plus Query: 7 ttagctcagttggt 20 |||||||||||||| Sbjct: 8402 ttagctcagttggt 8415 >AE006646 AE006641 |AE006646| Sulfolobus solfataricus P2 section 5 of 272 of the complete genome. Length = 7990 Score = 28.2 bits (14), Expect = 0.59 Identities = 17/18 (94%) Strand = Plus / Plus Query: 8 tagctcagttggtagagc 25 |||||||||||| ||||| Sbjct: 7723 tagctcagttggcagagc 7740 >AE006821 AE006641 |AE006821| Sulfolobus solfataricus P2 section 180 of 272 of the complete genome. Length = 10806 Score = 26.3 bits (13), Expect = 2.3 Identities = 13/13 (100%) Strand = Plus / Plus Query: 18 ggtagagcagttg 30 ||||||||||||| Sbjct: 1705 ggtagagcagttg 1717 >AE006751 AE006641 |AE006751| Sulfolobus solfataricus P2 section 110 of 272 of the complete genome. Length = 10129 Score = 26.3 bits (13), Expect = 2.3 Identities = 13/13 (100%) Strand = Plus / Minus Query: 13 cagttggtagagc 25 ||||||||||||| Sbjct: 6887 cagttggtagagc 6875 >AE006653 AE006641 |AE006653| Sulfolobus solfataricus P2 section 12 of 272 of the complete genome. Length = 8607 Score = 26.3 bits (13), Expect = 2.3 Identities = 13/13 (100%) Strand = Plus / Plus Query: 28 ttgacttttaatc 40 ||||||||||||| Sbjct: 5821 ttgacttttaatc 5833 >AE006908 AE006641 |AE006908| Sulfolobus solfataricus P2 section 267 of 272 of the complete genome. Length = 12816 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Minus Query: 49 gcaggttcgaat 60 |||||||||||| Sbjct: 7739 gcaggttcgaat 7728 >AE006903 AE006641 |AE006903| Sulfolobus solfataricus P2 section 262 of 272 of the complete genome. Length = 9623 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Minus Query: 28 ttgacttttaat 39 |||||||||||| Sbjct: 3104 ttgacttttaat 3093 >AE006899 AE006641 |AE006899| Sulfolobus solfataricus P2 section 258 of 272 of the complete genome. Length = 10222 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Plus Query: 32 cttttaatcaat 43 |||||||||||| Sbjct: 4771 cttttaatcaat 4782 >AE006864 AE006641 |AE006864| Sulfolobus solfataricus P2 section 223 of 272 of the complete genome. Length = 10105 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Plus Query: 30 gacttttaatca 41 |||||||||||| Sbjct: 7047 gacttttaatca 7058 >AE006802 AE006641 |AE006802| Sulfolobus solfataricus P2 section 161 of 272 of the complete genome. Length = 10029 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Minus Query: 33 ttttaatcaatt 44 |||||||||||| Sbjct: 7428 ttttaatcaatt 7417 >AE006778 AE006641 |AE006778| Sulfolobus solfataricus P2 section 137 of 272 of the complete genome. Length = 10554 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Minus Query: 14 agttggtagagc 25 |||||||||||| Sbjct: 693 agttggtagagc 682 >AE006749 AE006641 |AE006749| Sulfolobus solfataricus P2 section 108 of 272 of the complete genome. Length = 13962 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Plus Query: 20 tagagcagttga 31 |||||||||||| Sbjct: 8393 tagagcagttga 8404 >AE006656 AE006641 |AE006656| Sulfolobus solfataricus P2 section 15 of 272 of the complete genome. Length = 14326 Score = 24.3 bits (12), Expect = 9.1 Identities = 12/12 (100%) Strand = Plus / Plus Query: 33 ttttaatcaatt 44 |||||||||||| Sbjct: 7159 ttttaatcaatt 7170 Database: ss Posted date: Oct 5, 2007 1:30 AM Number of letters in database: 3,008,365 Number of sequences in database: 272 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 0, Extension: 0 Number of Sequences: 272 Number of Hits to DB: 1173 Number of extensions: 13 Number of successful extensions: 13 Number of sequences better than 10.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 76 Length of database: 3,008,365 Length adjustment: 14 Effective length of query: 62 Effective length of database: 3,004,557 Effective search space: 186282534 Effective search space used: 186282534 X1: 11 (21.8 bits) X2: 20 (39.6 bits) X3: 51 (101.1 bits) S1: 12 (24.3 bits) S2: 12 (24.3 bits)