1f7v.ent 1f7v.out 2 # duplex 27 # number of base-pairs 1 1 # explicit bp numbering/hetero atoms 607 678 0 # 1 | B:.901_:[PSU]P-*---A[..A]:.972_:B 0.84 0.30 15.36 8.88 1.44 608 677 0 # 2 | B:.902_:[..U]U-----A[..A]:.971_:B 0.28 0.16 9.22 8.76 -0.91 609 676 0 # 3 | B:.903_:[..C]C-----G[..G]:.970_:B 0.31 0.15 10.84 8.78 -0.90 610 675 0 # 4 | B:.904_:[..C]C-----G[..G]:.969_:B 0.47 0.25 5.66 8.85 -0.54 611 674 0 # 5 | B:.905_:[..U]U-*---G[..G]:.968_:B 2.35 0.09 12.19 8.81 2.53 612 673 0 # 6 | B:.906_:[..C]C-----G[..G]:.967_:B 0.39 0.17 16.03 8.68 -0.77 613 672 0 # 7 | B:.907_:[..G]G-----C[..C]:.966_:B 0.28 0.06 10.65 8.82 -1.09 655 671 0 # 8 | B:.949_:[5MC]c-----G[..G]:.965_:B 0.88 0.35 10.78 8.86 0.08 656 670 0 # 9 | B:.950_:[..C]C-----G[..G]:.964_:B 0.20 0.11 7.54 8.87 -1.09 657 669 0 # 10 | B:.951_:[..A]A-----U[..U]:.963_:B 0.24 0.14 4.54 8.90 -0.98 658 668 0 # 11 | B:.952_:[..G]G-----C[..C]:.962_:B 0.39 0.14 7.57 8.80 -0.82 659 667 0 # 12 | B:.953_:[..G]G-----C[..C]:.961_:B 0.23 0.14 18.16 8.88 -0.99 660 664 0 # 13 | B:.954_:[5MU]u-**--a[1MA]:.958_:B 4.58 0.06 9.94 7.29 4.70 661 623 9 # 14 x B:.955_:[PSU]P-**+-G[..G]:.917_:B 5.37 0.84 27.67 8.17 7.05 645 637 0 # 15 | B:.939_:[..C]C-----G[..G]:.931_:B 0.41 0.05 7.53 8.75 -0.99 646 636 0 # 16 | B:.940_:[..C]C-----G[..G]:.930_:B 0.24 0.20 7.90 8.95 -0.86 647 635 0 # 17 | B:.941_:[..A]A-----U[..U]:.929_:B 0.15 0.14 2.91 8.80 -1.07 648 634 0 # 18 | B:.942_:[..G]G-----C[..C]:.928_:B 0.45 0.25 15.68 8.71 -0.56 649 633 0 # 19 | B:.943_:[..A]A-*---P[PSU]:.927_:B 0.40 0.02 28.12 8.65 0.44 650 632 0 # 20 | B:.944_:[..A]A-*---g[M2G]:.926_:B 2.83 0.01 32.83 10.46 2.85 616 631 0 # 21 | B:.910_:[2MG]g-----C[..C]:.925_:B 0.79 0.04 11.39 8.69 -0.63 617 630 0 # 22 | B:.911_:[..C]C-----G[..G]:.924_:B 0.56 0.33 3.09 8.83 -0.29 618 629 0 # 23 | B:.912_:[..C]C-----G[..G]:.923_:B 0.33 0.14 8.25 8.89 -0.89 619 628 0 # 24 | B:.913_:[..C]C-*---C[..C]:.922_:B 4.86 0.14 12.67 8.22 5.14 620 614 0 # 25 | B:.914_:[..A]A-**--U[..U]:.908_:B 4.81 0.51 11.97 7.11 5.83 621 654 9 # 26 x B:.915_:[..A]A-**+-U[..U]:.948_:B 1.36 0.06 16.07 8.93 1.49 624 662 1 # 27 + B:.918_:[..G]G-----C[..C]:.956_:B 0.13 0.08 35.01 8.69 -1.21 ##### Base-pair criteria used: 4.00 15.00 2.50 65.00 4.50 7.50 ##### 9 non-Watson-Crick base-pairs, and 3 helices (1 isolated bp) ##### Helix #1 (14): 1 - 14 ***broken O3'[i] to P[i+1] linkage*** ##### Helix #2 (12): 15 - 26 ***broken O3'[i] to P[i+1] linkage*** ##### Helix #3 (1): 27