RID: 6CW9S7YP01R Job Title:Protein Sequence Program: BLASTP Query: Serine protease/helicase NS3) (3.4.21.98 {ECO:0000250|UniProtKB:P27958}) (3.6.1.15 {ECO:0000250|UniProtKB:P27958}) (3.6.4.13 {ECO:0000250|UniProtKB:P27958}) ID: lcl|Query_766454(amino acid) Length: 631 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356413 1179 1179 100% 0.0 100.00 3037 Q68749.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356414 1137 1137 100% 0.0 94.77 3033 Q9QAX1.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 11113 1126 1126 100% 0.0 94.29 3033 P26660.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356412 1107 1107 100% 0.0 91.13 3033 Q9DHD6.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356411 1105 1105 100% 0.0 91.60 3033 Q99IB8.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 11115 1102 1102 100% 0.0 91.13 3033 P26661.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 31642 1009 1009 100% 0.0 83.20 3010 Q00269.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356390 1006 1006 100% 0.0 82.73 3014 O91936.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 11105 1006 1006 100% 0.0 82.41 3010 P26663.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 333284 1002 1002 100% 0.0 82.25 3010 Q9WMX2.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 11116 1002 1002 100% 0.0 82.09 3010 P26662.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356425 1001 1001 100% 0.0 82.25 3016 O92531.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356391 1000 1000 100% 0.0 82.09 3019 Q5I2N3.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356423 998 998 100% 0.0 81.93 3022 Q68798.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356422 998 998 100% 0.0 82.09 3013 O92530.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356410 998 998 100% 0.0 81.93 3011 Q81754.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 420174 997 997 100% 0.0 81.77 3010 O92972.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 11104 989 989 100% 0.0 81.30 3011 P26664.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 421879 989 989 100% 0.0 81.62 3010 Q913V3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356420 988 988 100% 0.0 81.62 3018 O39927.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356421 988 988 100% 0.0 81.46 3019 O92529.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 31645 986 986 100% 0.0 80.67 3010 P29846.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 421877 984 984 100% 0.0 80.98 3011 Q03463.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356386 983 983 100% 0.0 80.98 3011 Q913D4.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356418 982 982 100% 0.0 81.62 3008 O39929.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356424 982 982 100% 0.0 81.46 3015 O92532.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356415 981 981 100% 0.0 80.35 3021 Q81258.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356419 981 981 100% 0.0 80.82 3014 O39928.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356416 974 974 100% 0.0 79.87 3021 Q81495.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 63746 971 971 100% 0.0 80.03 3011 P27958.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 356417 948 948 100% 0.0 79.56 3019 Q68801.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... Hepatitis C ... NA 357355 943 943 100% 0.0 78.45 3023 Q81487.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Core... GB virus-B NA 2847087 389 389 90% 2e-117 44.66 2864 Q69422.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Lettuce mosa... NA 117132 56.6 56.6 29% 6e-07 28.64 3255 P31999.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Pea seed-bor... NA 31736 47.0 47.0 35% 6e-04 25.71 3206 P29152.1 RecName: Full=Genome polyprotein 1; Contains: RecName:... Barley mild ... NA 103900 45.8 45.8 39% 0.001 23.02 2258 P90245.1 Alignments: >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate BEBE1)] Sequence ID: Q68749.3 Length: 3037 Range 1: 1031 to 1661 Score:1179 bits(3049), Expect:0.0, Method:Compositional matrix adjust., Identities:631/631(100%), Positives:631/631(100%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG Sbjct 1031 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIPARRRG Sbjct 1091 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIPARRRG 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 DRRGALLSPRPLSSLKGSSGGPVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR Sbjct 1151 DRRGALLSPRPLSSLKGSSGGPVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1211 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI Sbjct 1271 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK Sbjct 1331 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG Sbjct 1391 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSRSQRRGRTGRGRLGIYRYVSSGE Sbjct 1451 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSRSQRRGRTGRGRLGIYRYVSSGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY Sbjct 1571 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT Sbjct 1631 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate VAT96)] Sequence ID: Q9QAX1.3 Length: 3033 Range 1: 1031 to 1661 Score:1137 bits(2942), Expect:0.0, Method:Compositional matrix adjust., Identities:598/631(95%), Positives:619/631(98%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IVVSMTGRDKT+QAGEIQVLSTVTQSFLGT+ISG+LWTVFHGAG Sbjct 1031 APITAYAQQTRGLLGTIVVSMTGRDKTEQAGEIQVLSTVTQSFLGTTISGILWTVFHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSL+PCTCGAVDLYLVTRNADVIPARR+G Sbjct 1091 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLDPCTCGAVDLYLVTRNADVIPARRQG 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 DRRGALLSPRPLSSLKGSSGGPVLCPRGHAVGIFRAA+C+RG AKSIDFIP+ESLDV+ R Sbjct 1151 DRRGALLSPRPLSSLKGSSGGPVLCPRGHAVGIFRAAICTRGAAKSIDFIPIESLDVIIR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SPNFTDNS+PPAVPQTYQVGYLHAPTGSGKSTKVPA+YAAQGYKVLVLNPSVAATLGFGA Sbjct 1211 SPNFTDNSSPPAVPQTYQVGYLHAPTGSGKSTKVPASYAAQGYKVLVLNPSVAATLGFGA 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GINPNIRTGVRTVTTG++ITYSTYGKFLADGGCSGGAYDVIICDECHSVD+TTI Sbjct 1271 YMSKAHGINPNIRTGVRTVTTGESITYSTYGKFLADGGCSGGAYDVIICDECHSVDATTI 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLS IK Sbjct 1331 LGIGTVLDQAETAGARLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSQIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA ALRGMGLNAVAYYRGLDVS+IPTQGDVVVVATDALMTG+TG Sbjct 1391 GGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGLDVSVIPTQGDVVVVATDALMTGFTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSV+DCNVAVTQ VDFSLDPTFT+TTQTVPQD+VSRSQRRGRTGRGRLGIYRYVSSGE Sbjct 1451 DFDSVVDCNVAVTQTVDFSLDPTFTVTTQTVPQDAVSRSQRRGRTGRGRLGIYRYVSSGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 RASGMFD+VVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RASGMFDSVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAGE FPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTL GPTPLLY Sbjct 1571 HIDAHFLSQTKQAGENFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLTGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG VTNE TLTHPVTKYIATCMQADLEIMT Sbjct 1631 RLGPVTNETTLTHPVTKYIATCMQADLEIMT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus isolate HC-J6] Sequence ID: P26660.3 Length: 3033 Range 1: 1031 to 1661 Score:1126 bits(2912), Expect:0.0, Method:Compositional matrix adjust., Identities:595/631(94%), Positives:618/631(97%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IVVSMTGRDKT+QAGEIQVLSTVTQSFLGT+ISGVLWTV+HGAG Sbjct 1031 APITAYAQQTRGLLGTIVVSMTGRDKTEQAGEIQVLSTVTQSFLGTTISGVLWTVYHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGT+SLEPCTCGAVDLYLVTRNADVIPARRRG Sbjct 1091 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTKSLEPCTCGAVDLYLVTRNADVIPARRRG 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D+RGALLSPRPLS+LKGSSGGPVLCPRGHAVG+FRAAVCSRGVAKSIDFIPVE+LD+VTR Sbjct 1151 DKRGALLSPRPLSTLKGSSGGPVLCPRGHAVGVFRAAVCSRGVAKSIDFIPVETLDIVTR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP F+DNSTPPAVPQTYQVGYLHAPTGSGKSTKVP AYAAQGYKVLVLNPSVAATLGFGA Sbjct 1211 SPTFSDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPVAYAAQGYKVLVLNPSVAATLGFGA 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 Y+SKA+GINPNIRTGVRTVTTG ITYSTYGKFLADGGC+GGAYD+IICDECH+VDSTTI Sbjct 1271 YLSKAHGINPNIRTGVRTVTTGAPITYSTYGKFLADGGCAGGAYDIIICDECHAVDSTTI 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALG EGEIPFYG+AIPLS IK Sbjct 1331 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGQEGEIPFYGRAIPLSYIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA ALRGMGLNAVAYYRGLDVS+IPTQGDVVVVATDALMTG+TG Sbjct 1391 GGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGLDVSVIPTQGDVVVVATDALMTGFTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQD+VSRSQRRGRTGRGRLGIYRYVS+GE Sbjct 1451 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDAVSRSQRRGRTGRGRLGIYRYVSTGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 RASGMFD+VVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RASGMFDSVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ+GE F YL AYQATVCARAKAPPPSWDVMWKCL RLKPTLVGPTPLLY Sbjct 1571 HIDAHFLSQTKQSGENFAYLTAYQATVCARAKAPPPSWDVMWKCLTRLKPTLVGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLGSVTNEVTLTHPVTKYIATCMQADLE+MT Sbjct 1631 RLGSVTNEVTLTHPVTKYIATCMQADLEVMT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate JPUT971017)] Sequence ID: Q9DHD6.3 Length: 3033 Range 1: 1031 to 1661 Score:1107 bits(2862), Expect:0.0, Method:Compositional matrix adjust., Identities:575/631(91%), Positives:609/631(96%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY QQTRGLL AIVVS+TGRDK +QAG++QVLS+VTQSFLGTSISGVLWTV+HGAG Sbjct 1031 APITAYTQQTRGLLGAIVVSLTGRDKNEQAGQVQVLSSVTQSFLGTSISGVLWTVYHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 NKTLA RGPVTQMY+SAEGDLVGWPSPPGT+SL+PCTCGAVDLYLVTRNADVIP RR+ Sbjct 1091 NKTLASPRGPVTQMYTSAEGDLVGWPSPPGTKSLDPCTCGAVDLYLVTRNADVIPVRRKD 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 DRRGALLSPRPLS+LKGSSGGPVLCPRGHAVG+FRAAVC+RGVAKSIDFIPVESLD+ R Sbjct 1151 DRRGALLSPRPLSTLKGSSGGPVLCPRGHAVGLFRAAVCARGVAKSIDFIPVESLDIARR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 +P+F+DNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAY +QGYKVLVLNPSVAATLGFGA Sbjct 1211 TPSFSDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYTSQGYKVLVLNPSVAATLGFGA 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GINPNIRTGVRTVTTGD+ITYSTYGKFLADGGCS GAYD+IICDECHSVD+TTI Sbjct 1271 YMSKAHGINPNIRTGVRTVTTGDSITYSTYGKFLADGGCSAGAYDIIICDECHSVDATTI 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRL VLATATPPG+VTTPH NIEEVALGHEGEIPFYGKAIPL++IK Sbjct 1331 LGIGTVLDQAETAGVRLVVLATATPPGTVTTPHANIEEVALGHEGEIPFYGKAIPLASIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA ALRGMG+NAVAYYRGLDVS+IPTQGDVVVVATDALMTGYTG Sbjct 1391 GGRHLIFCHSKKKCDELAAALRGMGVNAVAYYRGLDVSVIPTQGDVVVVATDALMTGYTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQ+VDFSLDPTFTITTQTVPQD+VSRSQRRGRTGRGRLG YRYVSSGE Sbjct 1451 DFDSVIDCNVAVTQIVDFSLDPTFTITTQTVPQDAVSRSQRRGRTGRGRLGTYRYVSSGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RPSGMFDSVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ G+ F YL AYQATVCARAKAPPPSWDVMWKCL RLKPTL GPTPLLY Sbjct 1571 HIDAHFLSQTKQGGDNFAYLTAYQATVCARAKAPPPSWDVMWKCLTRLKPTLTGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+VTNE+TLTHPVTKYIATCMQADLE+MT Sbjct 1631 RLGAVTNEITLTHPVTKYIATCMQADLEVMT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus JFH-1] Sequence ID: Q99IB8.3 Length: 3033 Range 1: 1031 to 1661 Score:1105 bits(2859), Expect:0.0, Method:Compositional matrix adjust., Identities:578/631(92%), Positives:608/631(96%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL AIVVSMTGRD+T+QAGE+Q+LSTV+QSFLGT+ISGVLWTV+HGAG Sbjct 1031 APITAYAQQTRGLLGAIVVSMTGRDRTEQAGEVQILSTVSQSFLGTTISGVLWTVYHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 NKTLAG RGPVTQMYSSAEGDLVGWPSPPGT+SLEPC CGAVDLYLVTRNADVIPARRRG Sbjct 1091 NKTLAGLRGPVTQMYSSAEGDLVGWPSPPGTKSLEPCKCGAVDLYLVTRNADVIPARRRG 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D+RGALLSPRP+S+LKGSSGGPVLCPRGH VG+FRAAVCSRGVAKSIDFIPVE+LDVVTR Sbjct 1151 DKRGALLSPRPISTLKGSSGGPVLCPRGHVVGLFRAAVCSRGVAKSIDFIPVETLDVVTR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP F+DNSTPPAVPQTYQVGYLHAPTGSGKSTKVP AYAAQGYKVLVLNPSVAATLGFGA Sbjct 1211 SPTFSDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPVAYAAQGYKVLVLNPSVAATLGFGA 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 Y+SKA+GINPNIRTGVRTV TG+AITYSTYGKFLADGGC+ GAYD+IICDECH+VD+T+I Sbjct 1271 YLSKAHGINPNIRTGVRTVMTGEAITYSTYGKFLADGGCASGAYDIIICDECHAVDATSI 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHP+IEEV LG EGEIPFYG+AIPLS IK Sbjct 1331 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPDIEEVGLGREGEIPFYGRAIPLSCIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA ALRGMGLNAVAYYRGLDVSIIP QGDVVVVATDALMTGYTG Sbjct 1391 GGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGLDVSIIPAQGDVVVVATDALMTGYTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQ VDFSLDPTFTITTQTVPQD+VSRSQRRGRTGRGR G YRYVS+GE Sbjct 1451 DFDSVIDCNVAVTQAVDFSLDPTFTITTQTVPQDAVSRSQRRGRTGRGRQGTYRYVSTGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 RASGMFD+VVLCECYDAGAAWY+LTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RASGMFDSVVLCECYDAGAAWYDLTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAGE F YLVAYQATVCARAKAPPPSWD MWKCL RLKPTL GPTPLLY Sbjct 1571 HIDAHFLSQTKQAGENFAYLVAYQATVCARAKAPPPSWDAMWKCLARLKPTLAGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG +TNEVTLTHP TKYIATCMQADLE+MT Sbjct 1631 RLGPITNEVTLTHPGTKYIATCMQADLEVMT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus isolate HC-J8] Sequence ID: P26661.3 Length: 3033 Range 1: 1031 to 1661 Score:1102 bits(2850), Expect:0.0, Method:Compositional matrix adjust., Identities:575/631(91%), Positives:611/631(96%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY QQTRGLL AIVVS+TGRDK +QAG++QVLS+VTQ+FLGTSISGVLWTV+HGAG Sbjct 1031 APITAYTQQTRGLLGAIVVSLTGRDKNEQAGQVQVLSSVTQTFLGTSISGVLWTVYHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 NKTLAG +GPVTQMY+SAEGDLVGWPSPPGT+SL+PCTCGAVDLYLVTRNADVIP RR+ Sbjct 1091 NKTLAGPKGPVTQMYTSAEGDLVGWPSPPGTKSLDPCTCGAVDLYLVTRNADVIPVRRKD 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 DRRGALLSPRPLS+LKGSSGGPVLC RGHAVG+FRAAVC+RGVAKSIDFIPVESLDV TR Sbjct 1151 DRRGALLSPRPLSTLKGSSGGPVLCSRGHAVGLFRAAVCARGVAKSIDFIPVESLDVATR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 +P+F+DNSTPPAVPQ+YQVGYLHAPTGSGKSTKVPAAYA+QGYKVLVLNPSVAATLGFGA Sbjct 1211 TPSFSDNSTPPAVPQSYQVGYLHAPTGSGKSTKVPAAYASQGYKVLVLNPSVAATLGFGA 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GINPNIRTGVRTVTTGD+ITYSTYGKF+ADGGC+ GAYD+IICDECHSVD+TTI Sbjct 1271 YMSKAHGINPNIRTGVRTVTTGDSITYSTYGKFIADGGCAAGAYDIIICDECHSVDATTI 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRL VLATATPPG+VTTPH NIEEVALGHEGEIPFYGKAIPL+ IK Sbjct 1331 LGIGTVLDQAETAGVRLVVLATATPPGTVTTPHSNIEEVALGHEGEIPFYGKAIPLAFIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA ALRGMG+NAVAYYRGLDVS+IPTQGDVVVVATDALMTGYTG Sbjct 1391 GGRHLIFCHSKKKCDELAAALRGMGVNAVAYYRGLDVSVIPTQGDVVVVATDALMTGYTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAV+Q+VDFSLDPTFTITTQTVPQD+VSRSQRRGRTGRGRLG+YRYVSSGE Sbjct 1451 DFDSVIDCNVAVSQIVDFSLDPTFTITTQTVPQDAVSRSQRRGRTGRGRLGVYRYVSSGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RPSGMFDSVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ GE F YL AYQATVCARAKAPPPSWDVMWKCL RLKPTL GPTPLLY Sbjct 1571 HIDAHFLSQTKQGGENFAYLTAYQATVCARAKAPPPSWDVMWKCLTRLKPTLTGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+VTNEVTLTHPVTKYIATCMQADLEIMT Sbjct 1631 RLGAVTNEVTLTHPVTKYIATCMQADLEIMT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate HC-JT)] Sequence ID: Q00269.3 Length: 3010 Range 1: 1027 to 1657 Score:1009 bits(2610), Expect:0.0, Method:Compositional matrix adjust., Identities:525/631(83%), Positives:572/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IV S+TGRDK GE+QV+ST TQSFL T ++GV WTVFHGAG Sbjct 1027 APITAYAQQTRGLLGCIVTSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVFHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+TQMY++ + DLVGW +PPG RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 SKTLAGPKGPITQMYTNVDQDLVGWHAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GHAVGIFRAAVC+RGVAK++DFIPVES++ R Sbjct 1147 DGRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFIPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQT+QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+G +PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYD+IICDECHS DSTTI Sbjct 1267 YMSKAHGTDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEEVAL + GEIPFYGKAIPL AIK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPLEAIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+G+NAVAYYRGLDVS+IPT GDVV+VATDALMTGYTG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTSGDVVIVATDALMTGYTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T TVPQD+VSRSQRRGRTGRGR GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRGGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+TLTHP+TK+I CM ADLE++T Sbjct 1627 RLGAVQNEITLTHPITKFIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus SA13] Sequence ID: O91936.3 Length: 3014 Range 1: 1028 to 1658 Score:1006 bits(2600), Expect:0.0, Method:Compositional matrix adjust., Identities:522/631(83%), Positives:572/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRG+L AI+VS+TGRDK + GE+QVLST TQ+FLGT I+GV+WTVFHGAG Sbjct 1028 APITAYAQQTRGVLGAIIVSLTGRDKNEAEGEVQVLSTATQTFLGTCINGVMWTVFHGAG 1087 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 KTLAG +GPV QMY++ + DLVGWP+PPGTRSL PCTCG+ DLYLVTR+ADV+PARRRG Sbjct 1088 AKTLAGPKGPVVQMYTNVDKDLVGWPTPPGTRSLTPCTCGSADLYLVTRHADVVPARRRG 1147 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R +LLSPRP+S LKGSSGGPV+CP GH VG+FRAAVC+RGVAK++DFIPVE+L+ R Sbjct 1148 DTRASLLSPRPISYLKGSSGGPVMCPSGHVVGVFRAAVCTRGVAKALDFIPVENLETTMR 1207 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNSTPPAVP +QVG+LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1208 SPVFTDNSTPPAVPHEFQVGHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1267 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMS+AYG++PNIRTGVRTVTTG AITYSTYGKFLADGGCSGGAYDVIICDECHS D+TTI Sbjct 1268 YMSRAYGVDPNIRTGVRTVTTGAAITYSTYGKFLADGGCSGGAYDVIICDECHSQDATTI 1327 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVTTPHPNIEEVAL EGEIPFYG+AIPL+ IK Sbjct 1328 LGIGTVLDQAETAGARLVVLATATPPGSVTTPHPNIEEVALPSEGEIPFYGRAIPLALIK 1387 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+NAVAYYRGLDV++IP GDVVV +TDALMTG+TG Sbjct 1388 GGRHLIFCHSKKKCDELAKQLTSQGVNAVAYYRGLDVAVIPATGDVVVCSTDALMTGFTG 1447 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T TVPQD+VSRSQRRGRTGRGR GIYRYVSSGE Sbjct 1448 DFDSVIDCNTTVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRHGIYRYVSSGE 1507 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SG+FD+VVLCECYDAG AWY+LTPAETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1508 RPSGIFDSVVLCECYDAGCAWYDLTPAETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLT 1567 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 +IDAH LSQTKQ GE FPYLVAYQATVC RAKAPPPSWD MWKC++RLKPTL GPTPLLY Sbjct 1568 NIDAHMLSQTKQGGENFPYLVAYQATVCVRAKAPPPSWDTMWKCMLRLKPTLTGPTPLLY 1627 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+TLTHP+TKYI CM ADLE++T Sbjct 1628 RLGAVQNEITLTHPITKYIMACMSADLEVIT 1658 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protp26663ein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate BK)] Sequence ID: P26663.3 Length: 3010 Range 1: 1027 to 1657 Score:1006 bits(2600), Expect:0.0, Method:Compositional matrix adjust., Identities:520/631(82%), Positives:572/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY+QQTRGLL I+ S+TGRDK GE+QV+ST TQSFL T ++GV WTV+HGAG Sbjct 1027 APITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLA +GP+TQMY++ + DLVGWP PPG RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 SKTLAAPKGPITQMYTNVDQDLVGWPKPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GHAVGIFRAAVC+RGVAK++DF+PVES++ R Sbjct 1147 DSRGSLLSPRPVSYLKGSSGGPLLCPFGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQ++QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVRT+TTG +TYSTYGKFLADGGCSGGAYD+IICDECHS DSTTI Sbjct 1267 YMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEEVAL + GEIPFYGKAIP+ AI+ Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIR 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+G+NAVAYYRGLDVS+IPT GDVVVVATDALMTGYTG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T TVPQD+VSRSQRRGRTGRGR GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAET+VRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEVTLTHP+TKYI CM ADLE++T Sbjct 1627 RLGAVQNEVTLTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate Con1)] Sequence ID: Q9WMX2.3 Length: 3010 Range 1: 1027 to 1657 Score:1002 bits(2591), Expect:0.0, Method:Compositional matrix adjust., Identities:519/631(82%), Positives:571/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY+QQTRGLL I+ S+TGRD+ GE+QV+ST TQSFL T ++GV WTV+HGAG Sbjct 1027 APITAYSQQTRGLLGCIITSLTGRDRNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+TQMY++ + DLVGW +PPG RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 SKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GHAVGIFRAAVC+RGVAK++DF+PVES++ R Sbjct 1147 DSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQT+QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYD+IICDECHS DSTTI Sbjct 1267 YMSKAHGIDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEEVAL GEIPFYGKAIP+ IK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSSTGEIPFYGKAIPIETIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+GLNAVAYYRGLDVS+IPT GDV+VVATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDVSVIPTSGDVIVVATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T TVPQD+VSRSQRRGRTGRGR+GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAET+VRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEVT THP+TKYI CM ADLE++T Sbjct 1627 RLGAVQNEVTTTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate Japanese)] Sequence ID: P26662.3 Length: 3010 Range 1: 1027 to 1657 Score:1002 bits(2591), Expect:0.0, Method:Compositional matrix adjust., Identities:518/631(82%), Positives:570/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY+QQTRGLL I+ S+TGRDK GE+QVLST TQSFL T ++GV WTV+HGAG Sbjct 1027 APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+TQMY++ + DLVGWP+PPG RS+ PCTCG+ DLYLVTR+ADV+P RRRG Sbjct 1087 SKTLAGPKGPITQMYTNVDQDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVVPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GH VGIFRAAVC+RGVAK++DFIPVES++ R Sbjct 1147 DSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQT+QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI PNIRTGVRT+TTG ITYSTY KFLADGGCSGGAYD+IICDECHS DSTTI Sbjct 1267 YMSKAHGIEPNIRTGVRTITTGGPITYSTYCKFLADGGCSGGAYDIIICDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGS+T PHPNIEEVAL + GEIPFYGKAIP+ AIK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSITVPHPNIEEVALSNTGEIPFYGKAIPIEAIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+GLNAVAYYRGLDVS+IPT GDVVVVATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T T+PQD+VSR+QRRGRTGRGR GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRAQRRGRTGRGRSGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAET+VRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ PYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNLPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEVTLTHP+TKYI CM ADLE++T Sbjct 1627 RLGAVQNEVTLTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate VN405)] Sequence ID: O92531.3 Length: 3016 Range 1: 1029 to 1659 Score:1001 bits(2587), Expect:0.0, Method:Compositional matrix adjust., Identities:519/631(82%), Positives:569/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGL+ IV S+TGRDK + GEIQV+ST TQSFL T+++GVLWTV+HGAG Sbjct 1029 APITAYAQQTRGLVGTIVTSLTGRDKNEVEGEIQVVSTATQSFLATTVNGVLWTVYHGAG 1088 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+ QMY++ + DLVGWP+PPG RSL PCTCG+ DLYLVTRNADVIPARRRG Sbjct 1089 SKTLAGPKGPICQMYTNVDQDLVGWPAPPGARSLTPCTCGSSDLYLVTRNADVIPARRRG 1148 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R ALLSPRP+S+LKGSSGGP+LCP GH GIFRAAVC+RGVAKS+DF+PVE++ R Sbjct 1149 DTRAALLSPRPISTLKGSSGGPMLCPSGHVAGIFRAAVCTRGVAKSLDFVPVENMQSTAR 1208 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+F+DN+TPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG+ Sbjct 1209 SPSFSDNTTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGS 1268 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMS A+GI+PNIRTGVRT+TTG AITYSTYGKFLADGGCSGGAYD+IICDECHS D TT+ Sbjct 1269 YMSTAHGIDPNIRTGVRTITTGGAITYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTV 1328 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVT PHPNI EVAL GE+PFYGKAIPL IK Sbjct 1329 LGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITEVALSSTGEVPFYGKAIPLEYIK 1388 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +GLNAVA+YRG+DVS+IPT GDVVV ATDALMTGYTG Sbjct 1389 GGRHLIFCHSKKKCDELAKQLTSLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTG 1448 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNV+VTQVVDFSLDPTFTI T T+PQD+VSRSQRRGRTGRG+ G+YRYVS GE Sbjct 1449 DFDSVIDCNVSVTQVVDFSLDPTFTIETTTMPQDAVSRSQRRGRTGRGKHGVYRYVSQGE 1508 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SG+FDTVVLCE YD G AWYELTP+ETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1509 RPSGIFDTVVLCEAYDTGCAWYELTPSETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLT 1568 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAH LSQTKQ GE F YLVAYQATVCARAKAPPPSWD MWKCLIRLKP L GPTPLLY Sbjct 1569 HIDAHLLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDTMWKCLIRLKPMLTGPTPLLY 1628 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+T THP+TKYI TCM ADLE++T Sbjct 1629 RLGAVQNEITTTHPITKYIMTCMSADLEVIT 1659 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate 6a33)] Sequence ID: Q5I2N3.3 Length: 3019 Range 1: 1032 to 1662 Score:1000 bits(2585), Expect:0.0, Method:Compositional matrix adjust., Identities:518/631(82%), Positives:568/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGL+ IV S+TGRDK + GE+QV+ST TQSFL TSI+GV+WTV+HGAG Sbjct 1032 APITAYAQQTRGLVGTIVTSLTGRDKNEVEGEVQVVSTATQSFLATSINGVMWTVYHGAG 1091 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GPV QMY++ + DLVGWPSPPG RSL PCTCG+ DLYLVTR ADVIPARRRG Sbjct 1092 SKTLAGPKGPVCQMYTNVDKDLVGWPSPPGARSLTPCTCGSSDLYLVTREADVIPARRRG 1151 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R ALLSPRP+S+LKGSSGGPV+CP GH VG+FRAAVC+RGVAKS+DFIPVE+++ R Sbjct 1152 DNRAALLSPRPISTLKGSSGGPVMCPSGHVVGLFRAAVCTRGVAKSLDFIPVENMETTMR 1211 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+FTDNSTPPAVPQTYQVGYLHAPTGSGKST+VPAAYA+QGYKVLVLNPSVAATL FG+ Sbjct 1212 SPSFTDNSTPPAVPQTYQVGYLHAPTGSGKSTRVPAAYASQGYKVLVLNPSVAATLSFGS 1271 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YM +AYG+ PN+RTGVRTVTTG AITYSTYGKFLADGGCSGGAYD+IICDECHS D TT+ Sbjct 1272 YMRQAYGVEPNVRTGVRTVTTGGAITYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTV 1331 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RLTVLATATPPGS+T PHPNI E AL GEIPFYGKAIPL IK Sbjct 1332 LGIGTVLDQAETAGARLTVLATATPPGSITVPHPNITETALPTTGEIPFYGKAIPLEYIK 1391 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L+ +GLNAVA+YRG+DVS+IPT GDVV+ ATDALMTGYTG Sbjct 1392 GGRHLIFCHSKKKCDELAGKLKSLGLNAVAFYRGVDVSVIPTSGDVVICATDALMTGYTG 1451 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQVVDFSLDPTF+I T TVPQD+VSRSQRRGRTGRG+ G+YR+VS GE Sbjct 1452 DFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQDAVSRSQRRGRTGRGKPGVYRFVSQGE 1511 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFDTVVLCE YD G AWYELTP+ETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1512 RPSGMFDTVVLCEAYDTGCAWYELTPSETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLT 1571 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ GE F YLVAYQATVCARAKAPPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1572 HIDAHFLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDTMWKCLIRLKPTLTGPTPLLY 1631 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+ THP+TKYI TCM ADLE++T Sbjct 1632 RLGAVQNEIITTHPITKYIMTCMSADLEVIT 1662 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate JK046)] Sequence ID: Q68798.3 Length: 3022 Range 1: 1031 to 1661 Score:998 bits(2581), Expect:0.0, Method:Compositional matrix adjust., Identities:517/631(82%), Positives:566/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IV S+TGRDK + AGEIQ+LST TQ+FL T ++GV WTV+HGAG Sbjct 1031 APITAYAQQTRGLLGTIVTSLTGRDKNEAAGEIQILSTATQTFLATCVNGVCWTVYHGAG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG RGPV QMY++ + D+VGWP+P GTRS PCTCGA DLYL+TR ADVIPARRRG Sbjct 1091 SKTLAGPRGPVCQMYTNVDQDMVGWPAPAGTRSYTPCTCGASDLYLITRQADVIPARRRG 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R L+SPRP+S+LKGSSGGP+LCP GH VG+FRAAVC+RGVAK++DF+P E++D TR Sbjct 1151 DNRAGLISPRPISTLKGSSGGPLLCPSGHVVGLFRAAVCTRGVAKALDFVPCEAMDATTR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNSTPPAVPQ YQVGYLHAPTGSGKSTKVP AYA+QGYKVLVLNPSVAATL FG+ Sbjct 1211 SPTFTDNSTPPAVPQAYQVGYLHAPTGSGKSTKVPVAYASQGYKVLVLNPSVAATLSFGS 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 Y+S+A+GI+PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYDVIICDECHS D TT+ Sbjct 1271 YLSRAHGIDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDVIICDECHSTDPTTV 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RLTVLATATPPGSVT PHPNI+E AL GE+PFYGKAIPL IK Sbjct 1331 LGIGTVLDQAETAGCRLTVLATATPPGSVTVPHPNIQETALPLTGEVPFYGKAIPLEYIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA LR +GLNAVA+YRG+DVS+IPT GDVVV ATDALMTGYTG Sbjct 1391 GGRHLIFCHSKKKCDELAAQLRTLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQ+VDFSLDPTF+I T TVPQD+V+RSQRRGRTGRG+ G+YRYVS GE Sbjct 1451 DFDSVIDCNVAVTQIVDFSLDPTFSIETTTVPQDAVARSQRRGRTGRGKPGVYRYVSQGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFDTVVLCE YD GAAWYELTPAETTVRLRAY NTPGLPVCQDHLEFWEAVFTGLT Sbjct 1511 RPSGMFDTVVLCEAYDTGAAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWEAVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ GE F YLVAYQATVCARAKAPPPSWD MWKCL+RLKPTL GPTPLLY Sbjct 1571 HIDAHFLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDTMWKCLLRLKPTLTGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEVT THPVTKYI CM ADLE++T Sbjct 1631 RLGAVQNEVTPTHPVTKYIMACMSADLEVIT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate VN235)] Sequence ID: O92530.3 Length: 3013 Range 1: 1025 to 1655 Score:998 bits(2579), Expect:0.0, Method:Compositional matrix adjust., Identities:518/631(82%), Positives:567/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY QQTRGLL IV S+TGRD+ GEIQVLST TQSFLGT+I+GV+WTV+HGAG Sbjct 1025 APITAYCQQTRGLLGTIVTSLTGRDRNVVEGEIQVLSTATQSFLGTAINGVMWTVYHGAG 1084 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GPV QMY++ + D+VGWP+PPGTRSL PCTCGA DLYLVTRNADVIPARRRG Sbjct 1085 SKTLAGPKGPVCQMYTNVDQDMVGWPAPPGTRSLTPCTCGASDLYLVTRNADVIPARRRG 1144 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R LLSPRPLS+LKGSSGGP++CP H VG+FRAAVC+RGVAK++DF+PVE+++ R Sbjct 1145 DTRAGLLSPRPLSTLKGSSGGPLMCPSDHVVGLFRAAVCTRGVAKALDFVPVENMETTMR 1204 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYA+QGYKVLVLNPSVAATLGFG+ Sbjct 1205 SPVFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYASQGYKVLVLNPSVAATLGFGS 1264 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMS A+GI+PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYD+IICDECHS D TT+ Sbjct 1265 YMSTAHGIDPNIRTGVRTITTGGPITYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTV 1324 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVT PHPNI E AL GE+PFYGKAIPL IK Sbjct 1325 LGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPSTGEVPFYGKAIPLECIK 1384 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA LR +GLNAVA+YRG+DVS+IPT GDVVV ATDALMTGYTG Sbjct 1385 GGRHLIFCHSKKKCDELAKQLRTLGLNAVAFYRGVDVSVIPTAGDVVVCATDALMTGYTG 1444 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQ+VDFSLDPTF+I T TVPQD+V+RSQRRGRTGRG+ G+YRYVS GE Sbjct 1445 DFDSVIDCNVAVTQIVDFSLDPTFSIETTTVPQDAVARSQRRGRTGRGKPGVYRYVSQGE 1504 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFDTVVLCE YD G AWYELTP+ETTVRLRAY NTPGLPVCQDHLEFWE VFTG+T Sbjct 1505 RPSGMFDTVVLCEAYDVGCAWYELTPSETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGMT 1564 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ GE F YLVAYQATVCARAKAPPPSWD MWKCLIRLKP L GPTPLLY Sbjct 1565 HIDAHFLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDTMWKCLIRLKPMLTGPTPLLY 1624 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+ THP+TKYI TCM ADLE++T Sbjct 1625 RLGAVQNEIITTHPITKYIMTCMAADLEVIT 1655 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate HC-G9)] Sequence ID: Q81754.3 Length: 3011 Range 1: 1027 to 1657 Score:998 bits(2579), Expect:0.0, Method:Compositional matrix adjust., Identities:517/631(82%), Positives:570/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL I+ S+TGRDK GE+Q++ST TQ+FL T ++GV WTV+HGAG Sbjct 1027 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCVNGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 ++T+A + GPV QMY++ + DLVGWP+P G RSL PCTCGA DLYLVTR+ADVIP RRRG Sbjct 1087 SRTIASASGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGASDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GHAVGIFRAAVC+RGVAK++DF+PVESL+ R Sbjct 1147 DNRGSLLSPRPISYLKGSSGGPLLCPMGHAVGIFRAAVCTRGVAKAVDFVPVESLETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PP VPQ+YQV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPTVPQSYQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PN+RTGVRT+TTG IT+STYGKFLADGGCSGGAYD+IICDECHSVD+T+I Sbjct 1267 YMSKAHGIDPNVRTGVRTITTGSPITHSTYGKFLADGGCSGGAYDIIICDECHSVDATSI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLT+LATATPPGSVT PH NIEEVAL EGEIPFYGKAIPL+ IK Sbjct 1327 LGIGTVLDQAETAGVRLTILATATPPGSVTVPHSNIEEVALSTEGEIPFYGKAIPLNYIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+G+NAVA+YRGLDVS+IPT GDVVVVATDALMTGYTG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLVGLGVNAVAFYRGLDVSVIPTTGDVVVVATDALMTGYTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN V Q VDFSLDPTF+I T TVPQD+VSRSQRRGRTGRG+ GIYRYVS GE Sbjct 1447 DFDSVIDCNTCVVQTVDFSLDPTFSIETSTVPQDAVSRSQRRGRTGRGKHGIYRYVSPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAG AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSVVLCECYDAGCAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ+GE FPYLVAYQATVCARAKAPPPSWD MWKCLIRLKPTL G TPLLY Sbjct 1567 HIDAHFLSQTKQSGENFPYLVAYQATVCARAKAPPPSWDQMWKCLIRLKPTLTGATPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG V NE+TLTHP+TKYI CM ADLE++T Sbjct 1627 RLGGVQNEITLTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus isolate HC-J4] Sequence ID: O92972.2 Length: 3010 Range 1: 1027 to 1657 Score:997 bits(2578), Expect:0.0, Method:Compositional matrix adjust., Identities:516/631(82%), Positives:570/631(90%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY+QQTRG+L I+ S+TGRDK GE+QV+ST TQSFL T I+GV WTV+HGAG Sbjct 1027 APITAYSQQTRGVLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCINGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+TQMY++ + DLVGW +PPG RS+ PC+CG+ DLYLVTR+ADVIP RRRG Sbjct 1087 SKTLAGPKGPITQMYTNVDLDLVGWQAPPGARSMTPCSCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GH VG+FRAAVC+RGVAK++DFIPVES++ R Sbjct 1147 DSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGVFRAAVCTRGVAKAVDFIPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQT+QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVRT+TTG +ITYSTYGKFLADGGCSGGAYD+IICDECHS DSTTI Sbjct 1267 YMSKAHGIDPNIRTGVRTITTGGSITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEE+ L + GEIPFYGKAIP+ AIK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEIGLSNNGEIPFYGKAIPIEAIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+GLNAVAYYRGLDVS+IP GDVVVVATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGLDVSVIPPIGDVVVVATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T TVPQD+VSRSQRRGRTGRGR GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRSGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAET+VRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEV LTHP+TKYI CM ADLE++T Sbjct 1627 RLGAVQNEVILTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate 1)] Sequence ID: P26664.3 Length: 3011 Range 1: 1027 to 1657 Score:989 bits(2557), Expect:0.0, Method:Compositional matrix adjust., Identities:513/631(81%), Positives:565/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL I+ S+TGRDK GE+Q++ST Q+FL T I+GV WTV+HGAG Sbjct 1027 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +T+A +GPV QMY++ + DLVGWP+P G+RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 TRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GHAVGIFRAAVC+RGVAK++DFIPVE+L+ R Sbjct 1147 DSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVENLETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PP VPQ++QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPVVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYD+IICDECHS D+T+I Sbjct 1267 YMSKAHGIDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEEVAL GEIPFYGKAIPL IK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +G+NAVAYYRGLDVS+IPT GDVVVVATDALMTGYTG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T T+PQD+VSR+QRRGRTGRG+ GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETITLPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ+GE PYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQSGENLPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+TLTHPVTKYI TCM ADLE++T Sbjct 1627 RLGAVQNEITLTHPVTKYIMTCMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus isolate HCR6] Sequence ID: Q913V3.1 Length: 3010 Range 1: 1027 to 1657 Score:989 bits(2556), Expect:0.0, Method:Compositional matrix adjust., Identities:515/631(82%), Positives:567/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAY+QQTRGLL I+ S+TGRDK GE+QV+ST TQSFL T ++G WTVFHGAG Sbjct 1027 APITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGACWTVFHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+TQMY++ + DLVGW +PPG+RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 SKTLAGPKGPITQMYTNVDLDLVGWQAPPGSRSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP HAVGIFRAAVC+RGVAK++DFIPVES++ R Sbjct 1147 DSRGSLLSPRPVSYLKGSSGGPLLCPSRHAVGIFRAAVCTRGVAKAVDFIPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQT+QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVR +TTG ITYSTYGKFLADGGCSGGAYD+IICDECHS DSTTI Sbjct 1267 YMSKAHGIDPNIRTGVRAITTGAPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEEVAL + GEIPFYGKAIP+ IK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNAGEIPFYGKAIPIEVIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKK DELA L +GLNAVAYYRGLDVS+IPT GDVVVVATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKYDELAAKLSALGLNAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T TVPQD+V+RSQRRGRTGRGR GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVARSQRRGRTGRGRRGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAET+VRLRAY NTPGLPVCQDHLEFWE+V TGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVSTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+TLTHP+TK+I CM ADLE++T Sbjct 1627 RLGAVQNEITLTHPMTKFIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate EUHK2)] Sequence ID: O39927.3 Length: 3018 Range 1: 1031 to 1661 Score:988 bits(2554), Expect:0.0, Method:Compositional matrix adjust., Identities:515/631(82%), Positives:565/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGL+ IV S+TGRDK + GE+QV+ST TQSF+ TSI+GV+WTV+HG G Sbjct 1031 APITAYAQQTRGLVGTIVTSLTGRDKNEVEGEVQVVSTDTQSFVATSINGVMWTVYHGPG 1090 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 KTLAG +GPV QMY++ + DLVGWPSPPG RSL PC CG+ DLYLVTR ADVIPARRRG Sbjct 1091 FKTLAGPKGPVCQMYTNVDLDLVGWPSPPGARSLTPCNCGSSDLYLVTREADVIPARRRG 1150 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R ALLSPRP+S+LKGSSGGP++CP GH VG+FRAAVC+RGVAKS+DFIPVE+++ R Sbjct 1151 DSRAALLSPRPISTLKGSSGGPIMCPSGHVVGLFRAAVCTRGVAKSLDFIPVENMETTMR 1210 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+FTDNSTPPAVPQTYQVGYLHAPTGSGKST+VPAAYA+QGYKVLVLNPSVAATL FG+ Sbjct 1211 SPSFTDNSTPPAVPQTYQVGYLHAPTGSGKSTRVPAAYASQGYKVLVLNPSVAATLSFGS 1270 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YM +AYG+ PNIRTGVRTVTTG AITYSTYG+FLADGGCSGGAYD+IICDECHS D TT+ Sbjct 1271 YMRQAYGVEPNIRTGVRTVTTGGAITYSTYGEFLADGGCSGGAYDIIICDECHSTDPTTV 1330 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LG+GTVLDQAETAGVRLTVL TATPPGSVT PHPNI E AL GEIPFYGKAIPL IK Sbjct 1331 LGVGTVLDQAETAGVRLTVLPTATPPGSVTVPHPNITETALPTTGEIPFYGKAIPLEYIK 1390 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L+ +GLNAVA+YRG+DVS+IPT GDVVV ATDALMTGYTG Sbjct 1391 GGRHLIFCHSKKKCDELAGKLKSLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTG 1450 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQVVDFSLDPTF+I T TVPQD+VSRSQRRGRTGRG+ G+YR+VS GE Sbjct 1451 DFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQDAVSRSQRRGRTGRGKPGVYRFVSQGE 1510 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFDTVVLCE YD G AWYELTP+ETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1511 RPSGMFDTVVLCEAYDTGCAWYELTPSETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLT 1570 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLS TKQAGE F YLVAYQATVCARAKAPPPSWD+MWKCLIRLKPTL GPTPLLY Sbjct 1571 HIDAHFLSHTKQAGENFAYLVAYQATVCARAKAPPPSWDMMWKCLIRLKPTLTGPTPLLY 1630 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V N V THP+TKYI TCM ADLE++T Sbjct 1631 RLGAVQNGVITTHPITKYIMTCMSADLEVIT 1661 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate Th580)] Sequence ID: O92529.3 Length: 3019 Range 1: 1032 to 1662 Score:988 bits(2553), Expect:0.0, Method:Compositional matrix adjust., Identities:514/631(81%), Positives:564/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGL+ IV S+TGRDK + GE+QV+ST TQSFL T+I+GVLWTV+HGAG Sbjct 1032 APITAYAQQTRGLVGTIVTSLTGRDKNEAEGEVQVVSTATQSFLATTINGVLWTVYHGAG 1091 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +K LAG +GPV QMY++ + DLVGWP+P G RSL PCTCG+ DLYLVTR ADVIPARRRG Sbjct 1092 SKNLAGPKGPVCQMYTNVDQDLVGWPAPLGARSLAPCTCGSSDLYLVTRGADVIPARRRG 1151 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R ALLSPRP+S+LKGSSGGP++CP GH VG+FRAAVC+RGVAK++DFIPVE++D R Sbjct 1152 DTRAALLSPRPISTLKGSSGGPLMCPSGHVVGLFRAAVCTRGVAKALDFIPVENMDTTMR 1211 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQTYQVGYLHAPTGSGKST+VPAAYA QGYKVLVLNPSVAATL FGA Sbjct 1212 SPVFTDNSSPPAVPQTYQVGYLHAPTGSGKSTRVPAAYATQGYKVLVLNPSVAATLSFGA 1271 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVRT+TTG +TYSTYGKFLADGGCSGGAYD+IICDECHS D TT+ Sbjct 1272 YMSKAHGIDPNIRTGVRTITTGGPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDPTTV 1331 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVT PHPNI E AL GEIPFYGK IPL IK Sbjct 1332 LGIGTVLDQAETAGVRLTVLATATPPGSVTVPHPNITETALPTTGEIPFYGKCIPLEFIK 1391 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDEL+ L +GLNAVA+YRG+DV++IPT GDVVV ATDALMTGYTG Sbjct 1392 GGRHLIFCHSKKKCDELSKQLTSLGLNAVAFYRGVDVAVIPTSGDVVVCATDALMTGYTG 1451 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAVTQVVDFSLDPTF+I T TVPQD+VSRSQRRGRTGRG+ G+YR+VS GE Sbjct 1452 DFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQDAVSRSQRRGRTGRGKPGVYRFVSQGE 1511 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCE YD G AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1512 RPSGMFDSVVLCEAYDTGCAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLT 1571 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ GE F YLVAYQATVCARAKAPPPSWDVMWKCL RLKPTL GPTPLLY Sbjct 1572 HIDAHFLSQTKQGGENFAYLVAYQATVCARAKAPPPSWDVMWKCLTRLKPTLTGPTPLLY 1631 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+ THP+TKYI TCM ADLE++T Sbjct 1632 RLGAVQNEIVTTHPITKYIMTCMSADLEVIT 1662 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate Taiwan)] Sequence ID: P29846.3 Length: 3010 Range 1: 1027 to 1657 Score:986 bits(2549), Expect:0.0, Method:Compositional matrix adjust., Identities:509/631(81%), Positives:564/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGL I+ S+TGRDK GE+QV+ST TQSFL T I+GV WTV+HGAG Sbjct 1027 APITAYAQQTRGLFGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCINGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GP+TQMY++ + DLVGW +P G RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 SKTLAGPKGPITQMYTNVDQDLVGWHAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GH VGIFRAAVC+RGVAK++DF+PVES++ R Sbjct 1147 DSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFVPVESMETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQ +QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQAFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+G++PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYD+I+CDECHS DSTTI Sbjct 1267 YMSKAHGVDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIMCDECHSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGSVT PHPNIEE+AL + GEIPFYGKAIP+ IK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEIALSNTGEIPFYGKAIPIETIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +G++AVAYYRGLDVS+IP G+VVVVATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLSALGIHAVAYYRGLDVSVIPASGNVVVVATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T T+PQD+VSRSQRRGRT RGR GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTMPQDAVSRSQRRGRTSRGRRGIYRFVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAET+VRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG+ FPYLVAYQATVCARA+APPPSWD MWKCL RLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLTRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEVTLTHP+TKYI CM ADLE++T Sbjct 1627 RLGAVQNEVTLTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus isolate HC-J1] Sequence ID: Q03463.1 Length: 3011 Range 1: 1027 to 1657 Score:984 bits(2545), Expect:0.0, Method:Compositional matrix adjust., Identities:511/631(81%), Positives:562/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL I+ S+TGRDK GE+Q++ST Q+FL T I+GV WTV+HGAG Sbjct 1027 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +T+A +GPV QMY++ + DLVGWP+P G RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 TRTIASPKGPVIQMYTNVDQDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GH VGIFRAAVC+RGVAK++DFIPVESL+ R Sbjct 1147 DSRGSLLSPRPISYLKGSSGGPLLCPAGHVVGIFRAAVCTRGVAKAVDFIPVESLETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQ++QV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PNIRTGVRT+TTG ITYSTYGKFLADGGCSGGAYD+IICDECHS D+T++ Sbjct 1267 YMSKAHGIDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSV 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGS+T PH NIEEVAL GEIPFYGKAIPL AIK Sbjct 1327 LGIGTVLDQAETAGARLVVLATATPPGSITVPHANIEEVALSTTGEIPFYGKAIPLEAIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +G+NAVAYYRGLDVS+IPT GDVVVVATDALMTGYTG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLVALGVNAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T T+PQD+VSR+QRRGRTGRG+ GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ +LCECYD G AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1507 RPSGMFDSSILCECYDTGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ GE FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQGGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V EVTLTHPVTKYI TCM ADLE++T Sbjct 1627 RLGAVQGEVTLTHPVTKYIMTCMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate India)] Sequence ID: Q913D4.3 Length: 3011 Range 1: 1027 to 1657 Score:983 bits(2542), Expect:0.0, Method:Compositional matrix adjust., Identities:511/631(81%), Positives:564/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IV S+TGRDK GEIQ++ST TQ+FL T I+G WTV+HGAG Sbjct 1027 APITAYAQQTRGLLGCIVTSLTGRDKNQVEGEIQIVSTATQTFLATCINGACWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 ++T+A + GPV +MY++ + DLVGWP+P G RSL PCTCGA DLYLVTR+ADVIP RRRG Sbjct 1087 SRTIASASGPVVRMYTNVDQDLVGWPAPQGARSLTPCTCGASDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GH GIFRAAVC+RGVAK++DF+PVESL+ R Sbjct 1147 DNRGSLLSPRPISYLKGSSGGPLLCPMGHVAGIFRAAVCTRGVAKAVDFVPVESLETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PP VPQ+YQV +LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPTVPQSYQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+GI+PN+RTGVRT+TTG ITYSTYGKFLADGGC GGAYD+IICDECHSVD+T+I Sbjct 1267 YMSKAHGIDPNVRTGVRTITTGSPITYSTYGKFLADGGCPGGAYDIIICDECHSVDATSI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPG VT PH NIEEVAL +GE PFYGKAIPL+ IK Sbjct 1327 LGIGTVLDQAETAGVRLTVLATATPPGLVTVPHSNIEEVALSADGEKPFYGKAIPLNYIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L G+G+NAVA+YRGLDVS+IPT GDVVVVATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLVGLGVNAVAFYRGLDVSVIPTTGDVVVVATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN V Q VDFSLDP F+I T TVPQD+VSRSQRRGRTGRG+ GIYRYVS GE Sbjct 1447 DFDSVIDCNTCVVQTVDFSLDPIFSIETSTVPQDAVSRSQRRGRTGRGKHGIYRYVSPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAG AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDSVVLCECYDAGCAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ+GE FPYLVAYQATVCARA+APPPSWD MWKCLIRLKPTL G TPLLY Sbjct 1567 HIDAHFLSQTKQSGENFPYLVAYQATVCARARAPPPSWDQMWKCLIRLKPTLTGATPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLGSV NE+TLTHP+T+YI CM ADLE++T Sbjct 1627 RLGSVQNEITLTHPITQYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus ED43] Sequence ID: O39929.3 Length: 3008 Range 1: 1027 to 1657 Score:982 bits(2539), Expect:0.0, Method:Compositional matrix adjust., Identities:515/631(82%), Positives:561/631(88%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGL S IV S+TGRD + GE+QVLST TQSFLGT+++GV+WTV+HGAG Sbjct 1027 APITAYAQQTRGLFSTIVTSLTGRDTNENCGEVQVLSTATQSFLGTAVNGVMWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 KT++G +GPV QMY++ + DLVGWP+PPG RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 AKTISGPKGPVNQMYTNVDQDLVGWPAPPGVRSLAPCTCGSADLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RGALLSPRP+S LKGSSGGP+LCP GH GIFRAAVC+RGVAK++DF+PVESL+ R Sbjct 1147 DTRGALLSPRPISILKGSSGGPLLCPMGHRAGIFRAAVCTRGVAKAVDFVPVESLETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNSTPPAVPQTYQV +LHAPTGSGKSTKVPAA+AAQGYKVLVLNPSVAATLGFG Sbjct 1207 SPVFTDNSTPPAVPQTYQVAHLHAPTGSGKSTKVPAAHAAQGYKVLVLNPSVAATLGFGV 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKAYGI+PNIR+GVRT+TTG ITYSTYGKFLADGGCSGGAYD+IICDEC+S DSTTI Sbjct 1267 YMSKAYGIDPNIRSGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECYSTDSTTI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPH NIEEVAL GEIPFYGKAIPL IK Sbjct 1327 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHSNIEEVALPTTGEIPFYGKAIPLELIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +GLNAVAYYRGLDVS+IPT GDVVV ATDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELARQLTSLGLNAVAYYRGLDVSVIPTSGDVVVCATDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN +V Q VDFSLDPTF+I TVPQD+VSRSQRRGRTGRGRLG YRYV+ GE Sbjct 1447 DFDSVIDCNTSVIQTVDFSLDPTFSIEITTVPQDAVSRSQRRGRTGRGRLGTYRYVTPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFDT LCECYDAG AWYELTPAETT RL+AYF+TPGLPVCQDHLEFWE+VFTGLT Sbjct 1507 RPSGMFDTAELCECYDAGCAWYELTPAETTTRLKAYFDTPGLPVCQDHLEFWESVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HID HFLSQTKQ+GE FPYLVAYQATV A+ PPSWD MWKCLIRLKPTL GPTPLLY Sbjct 1567 HIDGHFLSQTKQSGENFPYLVAYQATVSAKVWLAPPSWDTMWKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLGSV NEV LTHP+TKYI CM ADLE++T Sbjct 1627 RLGSVQNEVVLTHPITKYIMACMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate VN004)] Sequence ID: O92532.3 Length: 3015 Range 1: 1028 to 1658 Score:982 bits(2538), Expect:0.0, Method:Compositional matrix adjust., Identities:514/631(81%), Positives:562/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRG++ IV S+TGRDK + GEIQV+ST TQSFL T+++GVLWTV++GAG Sbjct 1028 APITAYAQQTRGIVGTIVTSLTGRDKNEVEGEIQVVSTATQSFLATAVNGVLWTVYYGAG 1087 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GPV QMY++ + DLVGWP+P G RSL PC+CG+ DLYLVTRNADVIPARRRG Sbjct 1088 SKTLAGPKGPVCQMYTNVDQDLVGWPAPAGARSLTPCSCGSSDLYLVTRNADVIPARRRG 1147 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R ALLSPRP+S+LKGSSGGP+LCP GH GIFRAAVC+RGVAKS+DF PVES+ R Sbjct 1148 DNRAALLSPRPISTLKGSSGGPMLCPSGHVAGIFRAAVCTRGVAKSLDFAPVESMQSSQR 1207 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+F+DN++PPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG+ Sbjct 1208 SPSFSDNTSPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGS 1267 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMS ++GI+PNIRTGVRT+TTG AITYSTYGKFLADGGCSGGAYDVIICDECHS D TT+ Sbjct 1268 YMSTSHGIDPNIRTGVRTITTGGAITYSTYGKFLADGGCSGGAYDVIICDECHSTDPTTV 1327 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 GIGTVLDQAET+GVRLTVLATATPPGSVT PHPNI E AL GEIPFYGKA+PL IK Sbjct 1328 SGIGTVLDQAETSGVRLTVLATATPPGSVTVPHPNITESALPTTGEIPFYGKAVPLEYIK 1387 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCH KKKCDELA L +GLNAVA+YRG+DVS+IPT GDVVV ATDALMTGYTG Sbjct 1388 GGRHLIFCHPKKKCDELAKQLVSLGLNAVAFYRGVDVSVIPTSGDVVVCATDALMTGYTG 1447 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNV VTQVVDFSLDPTFTI T TVPQD+VSRSQRRGRTGRG+ G+YRYVS GE Sbjct 1448 DFDSVIDCNVTVTQVVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGKHGVYRYVSQGE 1507 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+V+LCE YD G AWYELTPAETTVRLRAY NTPGLPVCQDHLEFWE VFTGLT Sbjct 1508 RPSGMFDSVILCEAYDTGCAWYELTPAETTVRLRAYLNTPGLPVCQDHLEFWEGVFTGLT 1567 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQA E F YLVAYQATVCARAKAPPPSWD MWKCLIRLKP L GPTPLLY Sbjct 1568 HIDAHFLSQTKQAEENFAYLVAYQATVCARAKAPPPSWDTMWKCLIRLKPMLTGPTPLLY 1627 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG V NEV THP+TKYI TCM ADLE++T Sbjct 1628 RLGPVQNEVVTTHPITKYIMTCMSADLEVIT 1658 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate NZL1)] Sequence ID: Q81258.3 Length: 3021 Range 1: 1033 to 1663 Score:981 bits(2537), Expect:0.0, Method:Compositional matrix adjust., Identities:507/631(80%), Positives:564/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IV S+TGRDK GE+QVLST TQ+FLGT++ GV+WTV+HGAG Sbjct 1033 APITAYAQQTRGLLGTIVTSLTGRDKNVVTGEVQVLSTATQTFLGTTVGGVIWTVYHGAG 1092 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 ++TLAG++ P QMY++ + DLVGWP+PPG +SLEPC CG+ DLYLVTR+ADVIPARRRG Sbjct 1093 SRTLAGAKHPALQMYTNVDQDLVGWPAPPGAKSLEPCACGSSDLYLVTRDADVIPARRRG 1152 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D +LLSPRPL+ LKGSSGGPV+CP GH GIFRAAVC+RGVAKS+ FIPVE+L R Sbjct 1153 DSTASLLSPRPLACLKGSSGGPVMCPSGHVAGIFRAAVCTRGVAKSLQFIPVETLSTQAR 1212 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+F+DNSTPPAVPQ+YQVGYLHAPTGSGKSTKVPAAY AQGY VLVLNPSVAATLGFG+ Sbjct 1213 SPSFSDNSTPPAVPQSYQVGYLHAPTGSGKSTKVPAAYVAQGYNVLVLNPSVAATLGFGS 1272 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 +MS+AYGI+PNIRTG RTVTTG +TYSTYGKFLADGGCSGGAYDVIICDECH+ D+T+I Sbjct 1273 FMSRAYGIDPNIRTGNRTVTTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSI 1332 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGS+T PH NIEEVALG EGEIPFYGKAIP++ +K Sbjct 1333 LGIGTVLDQAETAGVRLTVLATATPPGSITVPHSNIEEVALGSEGEIPFYGKAIPIALLK 1392 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDE+A LRGMGLNAVAYYRGLDVS+IPT GDVVV ATDALMTG+TG Sbjct 1393 GGRHLIFCHSKKKCDEIASKLRGMGLNAVAYYRGLDVSVIPTTGDVVVCATDALMTGFTG 1452 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAV Q VDFSLDPTF+I T+T PQD+VSRSQRRGRTGRGRLG YRYV+SGE Sbjct 1453 DFDSVIDCNVAVEQYVDFSLDPTFSIETRTAPQDAVSRSQRRGRTGRGRLGTYRYVASGE 1512 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAG +WY+L PAETTVRLRAY +TPGLPVCQDHL+FWE+VFTGLT Sbjct 1513 RPSGMFDSVVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDHLDFWESVFTGLT 1572 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ G F YL AYQATVCARA+APPPSWD MWKCL+RLKPTL GPTPLLY Sbjct 1573 HIDAHFLSQTKQQGLNFSYLTAYQATVCARAQAPPPSWDEMWKCLVRLKPTLHGPTPLLY 1632 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG V NE LTHP+TKY+ CM ADLE+ T Sbjct 1633 RLGPVQNETCLTHPITKYLMACMSADLEVTT 1663 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate EUH1480)] Sequence ID: O39928.3 Length: 3014 Range 1: 1028 to 1658 Score:981 bits(2535), Expect:0.0, Method:Compositional matrix adjust., Identities:510/631(81%), Positives:563/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRG+L AIV+S+TGRDK + GE+Q LST TQ+FLG I+GV+WT+FHGAG Sbjct 1028 APITAYAQQTRGVLGAIVLSLTGRDKNEAEGEVQFLSTATQTFLGICINGVMWTLFHGAG 1087 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +KTLAG +GPV QMY++ + DLVGWPSPPG SL CTCG+ DLYLVTR+ADVIPARRRG Sbjct 1088 SKTLAGPKGPVVQMYTNVDKDLVGWPSPPGKGSLTRCTCGSADLYLVTRHADVIPARRRG 1147 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D R +LLSPRP+S LKGSSGGP++CP GH VG+FRAAVC+RGVAK+++F+PVE+L+ R Sbjct 1148 DTRASLLSPRPISYLKGSSGGPIMCPSGHVVGVFRAAVCTRGVAKALEFVPVENLETTMR 1207 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNSTPPAVP +QVG+LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAAT GFGA Sbjct 1208 SPVFTDNSTPPAVPHEFQVGHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATFGFGA 1267 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMS+AYG++PNIRTGVRTVTTG ITYSTYGKF ADGGCSGGAYDVIICDECHS D+TTI Sbjct 1268 YMSRAYGVDPNIRTGVRTVTTGAGITYSTYGKFFADGGCSGGAYDVIICDECHSQDATTI 1327 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATA PPGSVTTPHPNIEEVAL EGEIPFYG+AIPL IK Sbjct 1328 LGIGTVLDQAETAGARLVVLATAIPPGSVTTPHPNIEEVALPSEGEIPFYGRAIPLVLIK 1387 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +G+NAVAYYRGLDV++IP GDVVV +TDALMTG+TG Sbjct 1388 GGRHLIFCHSKKKCDELAKQLTSLGVNAVAYYRGLDVAVIPATGDVVVCSTDALMTGFTG 1447 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN AVTQ VDFSLDPTFTI T TVPQD+VSRSQRRGRTGRGR GIYRYVSSGE Sbjct 1448 DFDSVIDCNSAVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRHGIYRYVSSGE 1507 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SG+FD+VVLCECYDAG AWY+LTPAETTVRLRAY NTPGLPVCQ+HLEFWE VFTGLT Sbjct 1508 RPSGIFDSVVLCECYDAGCAWYDLTPAETTVRLRAYLNTPGLPVCQEHLEFWEGVFTGLT 1567 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 +IDAH LSQ KQ GE FPYLVAYQATVC RAKAPPPSWD MWKC+I LKPTL GPTPLLY Sbjct 1568 NIDAHMLSQAKQGGENFPYLVAYQATVCVRAKAPPPSWDTMWKCMICLKPTLTGPTPLLY 1627 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+TLTHP+TKYI CM ADLE++T Sbjct 1628 RLGAVQNEITLTHPITKYIMACMSADLEVIT 1658 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate HCV-K3a/650)] Sequence ID: Q81495.3 Length: 3021 Range 1: 1033 to 1663 Score:974 bits(2518), Expect:0.0, Method:Compositional matrix adjust., Identities:504/631(80%), Positives:562/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL IV S+TGRDK AGE+QVLST TQ+FLGT++ GV+WTV+HGAG Sbjct 1033 APITAYAQQTRGLLGTIVTSLTGRDKNVVAGEVQVLSTATQTFLGTTVGGVMWTVYHGAG 1092 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 ++TLAG + P QMY++ + DLVGWP+PPG +SLEPCTCG+ DLYLVTR+ADVIPARRRG Sbjct 1093 SRTLAGVKHPALQMYTNVDQDLVGWPAPPGAKSLEPCTCGSADLYLVTRDADVIPARRRG 1152 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D +LLSPRPL+ LKGSSGGPV+CP GH GIFRAAVC+RGVAK++ FIPVE+L R Sbjct 1153 DSTASLLSPRPLARLKGSSGGPVMCPSGHVAGIFRAAVCTRGVAKALQFIPVETLSTQAR 1212 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+F+DNSTPPAVPQ+YQVGYLHAPTGSGKSTKVPAAY AQGY VLVLNPSVAATLGFG+ Sbjct 1213 SPSFSDNSTPPAVPQSYQVGYLHAPTGSGKSTKVPAAYVAQGYNVLVLNPSVAATLGFGS 1272 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 +MS+AYGI+PNIRTG RTVTTG +TYSTYGKFLA GGCSGGAYDVIICD+CH+ D+T+I Sbjct 1273 FMSRAYGIDPNIRTGNRTVTTGAKLTYSTYGKFLAGGGCSGGAYDVIICDDCHAQDATSI 1332 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGS+T PH NIEEVALG EGEIPFYGKAIP++ IK Sbjct 1333 LGIGTVLDQAETAGVRLTVLATATPPGSITVPHSNIEEVALGSEGEIPFYGKAIPIACIK 1392 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCD++A LRGMGLNAVAYYRGLDVS+IPT GDVVV ATDALMTG+TG Sbjct 1393 GGRHLIFCHSKKKCDKMASKLRGMGLNAVAYYRGLDVSVIPTTGDVVVCATDALMTGFTG 1452 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAV Q VDFSLDPTF+I T T PQD+VSRSQRRGRTGRGRLG YRYV+ GE Sbjct 1453 DFDSVIDCNVAVEQYVDFSLDPTFSIETCTAPQDAVSRSQRRGRTGRGRLGTYRYVTPGE 1512 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAG +WY+L PAETTVRLRAY +TPGLPVCQDHL+ WE+VFTGLT Sbjct 1513 RPSGMFDSVVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDHLDLWESVFTGLT 1572 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQAG F YL AYQATVCARA+APPPSWD WKCL+RLKPTL GPTPLLY Sbjct 1573 HIDAHFLSQTKQAGLNFSYLTAYQATVCARAQAPPPSWDETWKCLVRLKPTLHGPTPLLY 1632 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG V NE+ LTHP+TKY+ CM ADLE+ T Sbjct 1633 RLGPVQNEICLTHPITKYVMACMSADLEVTT 1663 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate H77)] Sequence ID: P27958.3 Length: 3011 Range 1: 1027 to 1657 Score:971 bits(2510), Expect:0.0, Method:Compositional matrix adjust., Identities:505/631(80%), Positives:562/631(89%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITAYAQQTRGLL I+ S+TGRDK GE+Q++ST TQ+FL T I+GV WTV+HGAG Sbjct 1027 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAG 1086 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 +T+A +GPV Q Y++ + DLVGWP+P G+RSL PCTCG+ DLYLVTR+ADVIP RRRG Sbjct 1087 TRTIASPKGPVIQTYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRG 1146 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D RG+LLSPRP+S LKGSSGGP+LCP GHAVG+FRAAVC+RGVAK++DFIPVE+L+ R Sbjct 1147 DSRGSLLSPRPISYLKGSSGGPLLCPTGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMR 1206 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP FTDNS+PPAVPQ++QV +LHAPTGSGKSTKVPAAYAA+GYKVLVLNPSVAATLGFGA Sbjct 1207 SPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAKGYKVLVLNPSVAATLGFGA 1266 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKA+G++PNIRTGVRT+TTG ITYSTYGKFLAD GCSGGAYD+IICDECHS D+T+I Sbjct 1267 YMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADAGCSGGAYDIIICDECHSTDATSI 1326 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 GIGTVLDQAETAG RL VLATATPPGSVT HPNIEEVAL GEIPFYGKAIPL IK Sbjct 1327 SGIGTVLDQAETAGARLVVLATATPPGSVTVSHPNIEEVALSTTGEIPFYGKAIPLEVIK 1386 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +G+NAVAYYRGLDVS+IPT GDVVVV+TDALMTG+TG Sbjct 1387 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVSTDALMTGFTG 1446 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCN VTQ VDFSLDPTFTI T T+PQD+VSR+QRRGRTGRG+ GIYR+V+ GE Sbjct 1447 DFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGE 1506 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+ VLCECYDAG AWYELTPAETTVRLRAY NTPGLPVCQDHL FWE VFTGLT Sbjct 1507 RPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLGFWEGVFTGLT 1566 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ+GE FPYLVAYQATVCARA+APPPSWD M KCLIRLKPTL GPTPLLY Sbjct 1567 HIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMRKCLIRLKPTLHGPTPLLY 1626 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NEVTLTHP+TKYI TCM ADLE++T Sbjct 1627 RLGAVQNEVTLTHPITKYIMTCMSADLEVVT 1657 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate JK049)] Sequence ID: Q68801.3 Length: 3019 Range 1: 1032 to 1662 Score:948 bits(2450), Expect:0.0, Method:Compositional matrix adjust., Identities:502/631(80%), Positives:556/631(88%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 APITA+AQQTRGL IV S+TGRDK GEIQVLST TQ+FLGTS+ GV+WTV+HGAG Sbjct 1032 APITAHAQQTRGLFGTIVTSLTGRDKNIVTGEIQVLSTSTQTFLGTSVGGVMWTVYHGAG 1091 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 ++TLAG++ P QMY++ + DLVGWPSPPG +SL PCTCG+ DLYL+TR+ADV+PARRRG Sbjct 1092 SRTLAGNKRPALQMYTNVDQDLVGWPSPPGAKSLVPCTCGSADLYLITRDADVLPARRRG 1151 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D +LLSPRPL+ LKGSSGGP++CP GH GIFRAAVC+RGVAK++ FIPVESL TR Sbjct 1152 DSTASLLSPRPLACLKGSSGGPIMCPSGHVAGIFRAAVCTRGVAKALQFIPVESLSAQTR 1211 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+F+DNSTPPAVPQT+QVGYLHAPTGSG+STKVPA+Y AQGY VLVLNPSVAATLGFG Sbjct 1212 SPSFSDNSTPPAVPQTFQVGYLHAPTGSGESTKVPASYVAQGYTVLVLNPSVAATLGFGR 1271 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 +MS AYGI+PN+RTG RT+TTG +TYSTYGKFLADGGCSGGAYDVIICDECH+ D+T+I Sbjct 1272 FMSHAYGIDPNVRTGTRTITTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSI 1331 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAG RL VLATATPPGS+T PH NIEEVAL EGEIPFYG+AIPL IK Sbjct 1332 LGIGTVLDQAETAGARLVVLATATPPGSITVPHSNIEEVALTGEGEIPFYGRAIPLGVIK 1391 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHLIFCHSKKKCDELA L +G+NAVA+YRGLDVS+IPTQGDVVV ATDAL+TGYTG Sbjct 1392 GGRHLIFCHSKKKCDELAKQLTSLGVNAVAFYRGLDVSVIPTQGDVVVCATDALITGYTG 1451 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFDSVIDCNVAV Q VDFSLDPTF+I T TVPQD+VSRSQRRGRTGRG+ G YRYVS GE Sbjct 1452 DFDSVIDCNVAVEQYVDFSLDPTFSIETHTVPQDAVSRSQRRGRTGRGKSGTYRYVSPGE 1511 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAG AWYELTP+ETTVRLRAY +TPGLPVCQDHLEFWE VFTGLT Sbjct 1512 RPSGMFDSVVLCECYDAGCAWYELTPSETTVRLRAYLSTPGLPVCQDHLEFWEGVFTGLT 1571 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQTKQ G FPYL AYQATVCARA A PPSWD WKCLIRLKPTL GPTPLLY Sbjct 1572 HIDAHFLSQTKQQGLNFPYLTAYQATVCARAAALPPSWDETWKCLIRLKPTLHGPTPLLY 1631 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG+V NE+ THPVTKYIATCM ADLE+ T Sbjct 1632 RLGAVQNEICTTHPVTKYIATCMAADLEVAT 1662 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein precursor; AltName: Full=Capsid protein C; AltName: Full=p23; Contains: RecName: Full=Mature core protein; AltName: Full=p21; Contains: RecName: Full=Envelope glycoprotein E1; AltName: Full=gp32; AltName: Full=gp35; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; AltName: Full=gp68; AltName: Full=gp70; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; Short=p23; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; AltName: Full=Viroporin p70; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; AltName: Full=p8; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; AltName: Full=p56/58; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B; AltName: Full=p68 [Hepatitis C virus (isolate Tr Kj)] Sequence ID: Q81487.3 Length: 3023 Range 1: 1035 to 1665 Score:943 bits(2438), Expect:0.0, Method:Compositional matrix adjust., Identities:495/631(78%), Positives:559/631(88%), Gaps:0/631(0%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 +PI+AYAQQTRGL IV S+TGRDK GE+QVLST TQ+FLGT++ GV+WTV+HGAG Sbjct 1035 SPISAYAQQTRGLFGTIVTSLTGRDKNVVTGEVQVLSTATQTFLGTTVGGVMWTVYHGAG 1094 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 ++TLAG++ P QMY++ + DLVGWP+P GT+SL+PCTCG+ DLYLVTR ADV+PARRRG Sbjct 1095 SRTLAGNKRPALQMYTNVDQDLVGWPAPAGTKSLDPCTCGSSDLYLVTREADVLPARRRG 1154 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D +LLS RPLS LKGSSGGPV+CP GH VGIFRAAVC+RGVAK++ FIPVE+L R Sbjct 1155 DSTASLLSTRPLSCLKGSSGGPVMCPSGHVVGIFRAAVCTRGVAKALQFIPVETLSTQVR 1214 Query 181 SPNFTDNSTPPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGA 240 SP+F+DNSTPPAVP++YQVGYLHAPTGSGKSTKVPAAY AQGY VLVLNPSVAATLGFG Sbjct 1215 SPSFSDNSTPPAVPESYQVGYLHAPTGSGKSTKVPAAYVAQGYSVLVLNPSVAATLGFGT 1274 Query 241 YMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTI 300 YMSKAYGI+PNIRTG RT+TTG +TYSTYGKFLADGGCSGGAYDVIICDECH+ D+T+I Sbjct 1275 YMSKAYGIDPNIRTGTRTITTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSI 1334 Query 301 LGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIK 360 LGIGTVLDQAETAGVRLTVLATATPPGS+T PHPNIEEV L +GEIPFYGKA+PL+ IK Sbjct 1335 LGIGTVLDQAETAGVRLTVLATATPPGSITVPHPNIEEVGLTSDGEIPFYGKALPLAMIK 1394 Query 361 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTGYTG 420 GGRHL+FCHSK+KCDELA LRGMG+NAVA+YRGLDVS+IP GDVVV ATDALMTGYTG Sbjct 1395 GGRHLVFCHSKEKCDELASKLRGMGVNAVAFYRGLDVSVIPVSGDVVVCATDALMTGYTG 1454 Query 421 DFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVSSGE 480 DFD+VIDCNVAV Q VDFSLDPTF+I T+TVPQD+VSRSQRRGRTGRGR GIYR+V+ GE Sbjct 1455 DFDTVIDCNVAVEQYVDFSLDPTFSIETRTVPQDAVSRSQRRGRTGRGRPGIYRFVTPGE 1514 Query 481 RASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFTGLT 540 R SGMFD+VVLCECYDAG +WY+L PAETTVRLRAY +TPGLPVCQDHL+FWE VFTGLT Sbjct 1515 RPSGMFDSVVLCECYDAGCSWYDLQPAETTVRLRAYLSTPGLPVCQDHLDFWERVFTGLT 1574 Query 541 HIDAHFLSQTKQAGEGFPYLVAYQATVCARAKAPPPSWDVMWKCLIRLKPTLVGPTPLLY 600 HIDAHFLSQ KQ G F YLVAYQATVCARAKA PP WD MWKCLIRLKPTL GPTPLLY Sbjct 1575 HIDAHFLSQAKQQGLNFAYLVAYQATVCARAKASPPCWDEMWKCLIRLKPTLQGPTPLLY 1634 Query 601 RLGSVTNEVTLTHPVTKYIATCMQADLEIMT 631 RLG++ N++ +THP+TKYI CM ADLE+ T Sbjct 1635 RLGAIQNDICMTHPITKYIMACMSADLEVTT 1665 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Core protein; Contains: RecName: Full=Envelope glycoprotein E1; Contains: RecName: Full=Envelope glycoprotein E2; AltName: Full=NS1; Contains: RecName: Full=p13; Contains: RecName: Full=p6; Contains: RecName: Full=Viroporin p7; Contains: RecName: Full=Protease NS2; AltName: Full=Non-structural protein 2; Short=NS2; Contains: RecName: Full=Serine protease/helicase NS3; AltName: Full=Hepacivirin; AltName: Full=NS3 helicase; AltName: Full=NS3 protease; AltName: Full=NS3P; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=Non-structural protein 5A; Short=NS5A; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=NS5B [GB virus-B] Sequence ID: Q69422.1 Length: 2864 Range 1: 941 to 1504 Score:389 bits(998), Expect:2e-117, Method:Compositional matrix adjust., Identities:255/571(45%), Positives:326/571(57%), Gaps:10/571(1%) Query 1 APITAYAQQTRGLLSAIVVSMTGRDKTDQAGEIQVLSTVTQSFLGTSISGVLWTVFHGAG 60 AP T RG LSA+ V MTG D G I L ++ S++G VL+T HG+ Sbjct 941 APFTLQCLSERGTLSAMAVVMTGIDPRTWTGTIFRLGSLATSYMGFVCDNVLYTAHHGSK 1000 Query 61 NKTLAGSRGPVTQMYSSAEGDLVGWPSPPGTRSLEPCTCGAVDLYLVTRNADVIParrrg 120 + LA G + + A D + P G SL C+CG YLVTR ++ + Sbjct 1001 GRRLAHPTGSIHPITVDAANDQDIYQPPCGAGSLTRCSCGETKGYLVTRLGSLVEVNKSD 1060 Query 121 drrgallsprplsslkgssggpVLCPRGHAVGIFRAAVCSRGVAKSIDFIPVESLDVVTR 180 D + P++ KGSSG P+LC GH +G+F AA R S+ I V L Sbjct 1061 DPYWCVCGALPMAVAKGSSGAPILCSSGHVIGMFTAA---RNSGGSVSQIRVRPLVCAGY 1117 Query 181 SPNFTDNST---PPAVPQTYQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLG 237 P +T ++T P VP Y V L APTGSGKSTK+P +Y + Y+VLVLNPSVA T Sbjct 1118 HPQYTAHATLDTKPTVPNEYSVQILIAPTGSGKSTKLPLSYMQEKYEVLVLNPSVATTAS 1177 Query 238 FGAYMSKAYGINPNIRTGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDS 297 YM YG+NPN + TG ++TYSTYG +L G CS YDVIICDECH+ D+ Sbjct 1178 MPKYMHATYGVNPNCYFNGKCTNTGASLTYSTYGMYLT-GACSRN-YDVIICDECHATDA 1235 Query 298 TTILGIGTVLDQAETAGVRLTVLATATPPGSVTTPHPNIEEVALGHEGEIPFYGKAIPLS 357 TT+LGIG VL +A + VRL VLATATPPG + TPH NI E+ L EG IPF+GK I Sbjct 1236 TTVLGIGKVLTEAPSKNVRLVVLATATPPGVIPTPHANITEIQLTDEGTIPFHGKKIKEE 1295 Query 358 AIKGGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGLDVSIIPTQGDVVVVATDALMTG 417 +K GRHLIF +KK CDELA L G+ AV+YYRG D+S IP +GD VVVATDAL TG Sbjct 1296 NLKKGRHLIFEATKKHCDELANELARKGITAVSYYRGCDISKIP-EGDCVVVATDALCTG 1354 Query 418 YTGDFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDSVSrsqrrgrtgrgrlgiyrYVS 477 YTGDFDSV DC++ V LDPTFT+ + ++ + QRRGRTGRGR GIY YV Sbjct 1355 YTGDFDSVYDCSLMVEGTCHVDLDPTFTMGVRVCGVSAIVKGQRRGRTGRGRAGIYYYVD 1414 Query 478 SGERASGMFDTVVLCECYDAGAAWYELTPAETTVRLRAYFNTPGLPVCQDHLEFWEAVFT 537 SGM + E +DA AWY L+ E L Y PGLP +L+ W +F+ Sbjct 1415 GSCTPSGMVPECNIVEAFDAAKAWYGLSSTEAQTILDTYRTQPGLPAIGANLDEWADLFS 1474 Query 538 GLTHIDAHFLSQTKQAGEGFPYLVAYQATVC 568 + + + F++ K+ + + L A Q +C Sbjct 1475 -MVNPEPSFVNTAKRTADNYVLLTAAQLQLC 1504 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Lettuce mosaic virus (strain 0 / French isolate)] Sequence ID: P31999.3 Length: 3255 Range 1: 1403 to 1597 Score:56.6 bits(135), Expect:6e-07, Method:Compositional matrix adjust., Identities:57/199(29%), Positives:92/199(46%), Gaps:14/199(7%) Query 197 YQVGYLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSV-AATLGFGAYMSKAYGINPNIRTG 255 Y+ L GSGKST +P +G VL++ P+ A + S + ++PN+R Sbjct 1403 YRDILLQGGVGSGKSTGLPFHLHRKG-GVLLIEPTRPLAQNVYKQLGSSPFHLSPNLRMR 1461 Query 256 VRTVTTGDAITYSTYG---KFLADGGCSGGAYDVIICDECHSVDSTTILGIGTVLDQAET 312 +T +T G F+A+ S AYD II DECH +D++ + +L + E Sbjct 1462 GSCKFGSSQVTVATSGYALHFIANNAQSLKAYDFIIFDECHVLDASA-MAFRCLLQEFEY 1520 Query 313 AGVRLTVLATATPPGSVTTPHP-NIEEVALGHEGEIPFY----GKAIPLSAIKGGRH-LI 366 G + V +ATPPG P ++ ++A +E I + G + A K G + L+ Sbjct 1521 QGKIIKV--SATPPGRKLDFKPMHMVDIATENELSIQQFVQGQGTGVNCDATKKGDNILV 1578 Query 367 FCHSKKKCDELAVALRGMG 385 + S + D L+ L G Sbjct 1579 YVSSYNEVDMLSKMLNDKG 1597 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Pea seed-borne mosaic virus (strain DPD1)] Sequence ID: P29152.1 Length: 3206 Range 1: 1349 to 1583 Score:47.0 bits(110), Expect:6e-04, Method:Composition-based stats., Identities:63/245(26%), Positives:104/245(42%), Gaps:33/245(13%) Query 202 LHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKA-YGINPNIR------- 253 + GSGKST +P +A+G +VL+L P+ T A + + + +P++ Sbjct 1349 IRGAVGSGKSTGLPCYLSAKG-RVLLLEPTRPLTENVCAQLRGSPFHKSPSMSMRNGHTF 1407 Query 254 --TGVRTVTTGDAITYSTYGKFLADGGCSGGAYDVIICDECHSVDSTTILGIGTVLDQAE 311 T + +TTG A+ F + YD +I DECH +DS+ + L + Sbjct 1408 GSTPIHVMTTGYAL------HFFCNNVERIREYDFVIFDECHVIDSSA-MSFYCALKEYS 1460 Query 312 TAGVRLTVLATATPPG-----SVTTPHPNIEEVALGHEGEIPFYGKAIPLSAIKGGRH-L 365 G L V +ATPPG P E +L + + G +K G + L Sbjct 1461 YQGKILKV--SATPPGREVEFKTQFPVTIATEDSLSFDQFVQAQGSGANCDILKKGHNIL 1518 Query 366 IFCHSKKKCDELAVAL--RGMGLNAV----AYYRGLDVSIIPT-QGDVVVVATDALMTGY 418 ++ S + D L+ L RG + V G++++ T + +VAT+ + G Sbjct 1519 VYVSSYNEVDRLSKLLVDRGFKVTKVDGRTMKLGGVEINTSGTAEKPHFIVATNIIENGV 1578 Query 419 TGDFD 423 T D D Sbjct 1579 TLDID 1583 >RecName: Full=Genome polyprotein 1; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Coat protein; Short=CP [Barley mild mosaic virus (strain Na1)] Sequence ID: P90245.1 Length: 2258 Range 1: 454 to 724 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:64/278(23%), Positives:107/278(38%), Gaps:35/278(12%) Query 206 TGSGKSTKVPAAY-------AAQGYKVLVLNPSVAATLGFGAYMSKAYGINPNIRTGVRT 258 TGSGKST++P AY A + VLV P+ AAT+ + +S+ +G R + Sbjct 454 TGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWS 513 Query 259 VTTGDAITYSTYGKFLADGGCSG---GAYDVIICDECHSVDSTTILGIGTVLDQAETAGV 315 I TYG LA +D + DE H + +T L ++ E V Sbjct 514 NLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLI-TTHALVFESICQ--EVTNV 570 Query 316 RLTVLATATPPGSVTTPH-------PNIEEVALGHEGEIPFYGKAIPLSAIKGGRHLIFC 368 R +ATP P ++ + + K L ++ L+F Sbjct 571 R-KFYVSATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQDKENSLYVLQHETVLVFL 629 Query 369 HSKKKCDELAVALRGM-----------GLNAVAYYRGLDVSIIPTQGDVVVVATDALMTG 417 K +CD A + G N Y + ++ + ++V T+ L TG Sbjct 630 AGKAECDRAASNWNKLYSTNMYAYSLTGDNFTVAYENIVTRMLTDR--IIVFCTNILETG 687 Query 418 YTGDFDSVIDCNVAVTQVVDFSLDPTFTITTQTVPQDS 455 T + D V+D + +D +D + T+ + V ++ Sbjct 688 VTLNVDCVVDFGFTMRPELDL-VDKSLTLMRRRVTENE 724