BLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
         (77 letters)

Database: pf 
           173 sequences; 1,918,246 total letters

Searching..................................................done

 ***** No hits found ******


  Database: pf
    Posted date:  Dec 3, 2007  1:17 AM
  Number of letters in database: 1,918,246
  Number of sequences in database:  173
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 173
Number of Hits to DB: 838
Number of extensions: 34
Number of successful extensions: 3
Number of sequences better than 1.0e-03: 0
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 0
Length of query: 77
Length of database: 1,918,246
Length adjustment: 13
Effective length of query: 64
Effective length of database: 1,915,997
Effective search space: 122623808
Effective search space used: 122623808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
S2: 19 (38.2 bits)