fasta35 IletRNA.fasta pf_genome.fasta 6 -o fasta.txt FASTA searches a protein or DNA sequence data bank version 35.02 September 18, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: U00096, 77 nt 1>>>U00096 U00096.2 Escherichia coli K12 MG1655, comple 77 nt - 77 ntfastA.txt Library: pf_genome.fasta 1918246 residues in 173 sequences opt E() < 20 0 0: 22 0 0: one = represents 2 library sequences 24 0 0: 26 0 0: 28 0 0: 30 0 1:* 32 0 3: * 34 0 7: * 36 4 15:== * 38 36 25:============*===== 40 78 34:================*====================== 42 57 42:====================*======== 44 46 46:======================* 46 31 47:================ * 48 19 45:========== * 50 16 41:======== * 52 8 36:==== * 54 37 31:===============*=== 56 43 26:============*========= 58 38 21:==========*======== 60 22 17:========*== 62 16 14:======*= 64 12 11:=====* 66 8 9:====* 68 7 7:===* 70 4 5:==* 72 5 4:=*= 74 1 3:=* 76 5 3:=*= 78 2 2:* 80 1 2:* 82 1 1:* 84 1 1:* 86 1 1:* 88 0 1:* 90 1 0:= 92 0 0: 94 0 0: 96 0 0: 98 0 0: 100 0 0: 102 0 0: 104 0 0: 106 0 0: 108 0 0: 110 0 0: 112 0 0: 114 0 0: 116 0 0: 118 0 0: >120 0 0: 1918246 residues in 173 sequences Statistics: (shuffled [500]) Expectation_n fit: rho(ln(x))= 13.3707+/-0.0294; mu= -63.8076+/- 2.748 mean_var=284.6854+/-129.220, 0's: 0 Z-trim: 0 B-trim: 0 in 0/16 Lambda= 0.076014 Kolmogorov-Smirnov statistic: 0.0979 (N=26) at 42 Algorithm: FASTA (3.5 Sept 2006) Parameters: +5/-4 matrix (5:-4) ktup: 6 join: 45, opt: 30, open/ext: -12/-4, width: 16 The best scores are: opt bits E(173) AE010198 AE009950 |AE010198| Pyrococcus furios (14484) [f] 164 31.9 0.038 AE010200 AE009950 |AE010200| Pyrococcus furios (11753) [f] 130 28.1 0.5 AE010209 AE009950 |AE010209| Pyrococcus furios (12355) [f] 125 27.6 0.73 AE010241 AE009950 |AE010241| Pyrococcus furios (13004) [r] 125 27.6 0.74 AE010271 AE009950 |AE010271| Pyrococcus furios (2982) [f] 116 26.6 1.4 AE010257 AE009950 |AE010257| Pyrococcus furios (14506) [r] 115 26.5 1.6 AE010172 AE009950 |AE010172| Pyrococcus furios (10586) [f] 114 26.4 1.7 AE010130 AE009950 |AE010130| Pyrococcus furios (8716) [r] 111 26.1 2.1 AE010163 AE009950 |AE010163| Pyrococcus furios (14843) [r] 111 26.0 2.1 AE010293 AE009950 |AE010293| Pyrococcus furios (9294) [f] 110 25.9 2.3 AE010236 AE009950 |AE010236| Pyrococcus furios (10945) [f] 110 25.9 2.3 AE010149 AE009950 |AE010149| Pyrococcus furios (12854) [r] 110 25.9 2.3 AE010251 AE009950 |AE010251| Pyrococcus furios (11316) [r] 109 25.8 2.5 AE010218 AE009950 |AE010218| Pyrococcus furios (14175) [r] 108 25.7 2.7 AE010187 AE009950 |AE010187| Pyrococcus furios (11444) [f] 105 25.4 3.3 AE010206 AE009950 |AE010206| Pyrococcus furios (12958) [f] 105 25.4 3.3 AE010228 AE009950 |AE010228| Pyrococcus furios (10584) [f] 100 24.8 4.8 AE010154 AE009950 |AE010154| Pyrococcus furios (14227) [r] 100 24.8 4.8 AE010135 AE009950 |AE010135| Pyrococcus furios (13488) [r] 100 24.8 4.8 AE010250 AE009950 |AE010250| Pyrococcus furios (10843) [r] 98 24.6 5.6 >>AE010198 AE009950 |AE010198| Pyrococcus furiosus DSM 3 (14484 nt) initn: 164 init1: 104 opt: 164 Z-score: 109.1 bits: 31.9 E(): 0.038 banded Smith-Waterman score: 202; 75.3% identity (75.3% similar) in 77 nt overlap (2-77:2457-2533) 10 20 30 U00096 AGGCTTGTAGCTCAG-GTGGTTAGAGCGCAC ::: :: :::::: :::: ::::::: : AE0101 GGGTTCAAATCCCGGCCGGGGCACCAAATGGGCCCGTGGCTCAGCCTGGTCAGAGCGCCC 2430 2440 2450 2460 2470 2480 40 50 60 70 U00096 CCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA ::::::::: : :::::: : ::::: : :: : : :::: :::: AE0101 GCCTGATAAGCGGGAGGTCCGGGGTTCGAAGCCCCGCGGGCCCACCATAATTCTTCTAAA 2490 2500 2510 2520 2530 2540 AE0101 AACTTATAACGACCACCAGGGACTCAAGATGTCCTTAACCTCCTCCGCCAACTTTAGGGT 2550 2560 2570 2580 2590 2600 >>AE010200 AE009950 |AE010200| Pyrococcus furiosus DSM 3 (11753 nt) initn: 130 init1: 130 opt: 130 Z-score: 90.6 bits: 28.1 E(): 0.5 banded Smith-Waterman score: 164; 68.4% identity (68.4% similar) in 76 nt overlap (2-77:7997-8072) 10 20 30 U00096 AGGCTTGTAGCTCAGGTGGTTAGAGCGCACC ::: ::::::::: : ::::::: : AE0102 AAATACGATTATCCACTAACATCGAGGGTGGGCCGGTAGCTCAGCCTGGAAGAGCGCCGC 7970 7980 7990 8000 8010 8020 40 50 60 70 U00096 CCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA ::: :::: :::: :: ::::::: ::: : :: : :::: AE0102 CCTCGCAAGGCGGAGGCCGCGGGTTCAAATCCCGCCCGGTCCACCAAATTCTTCTTAGGG 8030 8040 8050 8060 8070 8080 AE0102 AGGGAATCAAATGGATGAAGGGACTCGCACTGTTCTTAGAAAGTTTGAGCACATAGAGCA 8090 8100 8110 8120 8130 8140 >>AE010209 AE009950 |AE010209| Pyrococcus furiosus DSM 3 (12355 nt) initn: 125 init1: 125 opt: 125 Z-score: 87.2 bits: 27.6 E(): 0.73 banded Smith-Waterman score: 170; 75.4% identity (75.4% similar) in 61 nt overlap (17-77:2187-2247) 10 20 30 40 U00096 AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAG :::::: ::: :::::: :::: ::: AE0102 ACAAATTTTGGGCGGGCCCGTGGTCTAGACTGGTTATGACGCCACCCTGACAAGGTGGAG 2160 2170 2180 2190 2200 2210 50 60 70 U00096 GTCGGTGGTTCAAGTCCACTCAGGCCTACCA ::: : ::::::: ::: : : :::: :::: AE0102 GTCCGGGGTTCAAATCCCCGCGGGCCCACCAGATTTTCTTAGTAATTCAAAAAACTTACT 2220 2230 2240 2250 2260 2270 AE0102 TTTCTTGGGAATTTTGTTTGCAACTTTCTTTGCAAAGCCTGTAGAAACTTATTATTCCTC 2280 2290 2300 2310 2320 2330 >>AE010241 AE009950 |AE010241| Pyrococcus furiosus DSM 3 (13004 nt) rev-comp initn: 125 init1: 100 opt: 125 Z-score: 86.8 bits: 27.6 E(): 0.74 banded Smith-Waterman score: 193; 74.0% identity (74.0% similar) in 77 nt overlap (77-2:2191-2267) 70 60 50 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGA :::: :::: : : ::: ::::::: : :: AE0102 CTGGGAATAATAATGTCCAGAAGAGAATGATGGTGGGCCCGCGGGGATTTGAACCCCGGA 2170 2180 2190 2200 2210 2220 40 30 20 10 U0009- CCTCACCCTTATCAGGGGTGCGCTCTAACCA-CCTGAGCTACAAGCCT :: : : :::: :: : ::::::: :::: ::::::::: ::: AE0102 CCACGCGGTTATGAGCCGCGCGCTCTGACCAGGCTGAGCTACGGGCCCACTTACTGGCGC 2230 2240 2250 2260 2270 2280 AE0102 CGCCGCCCGGATTCGAACCGGGGACCGCCGGATTAACAGTCCGGCGCTCCACCAGCTAAG 2290 2300 2310 2320 2330 2340 >>AE010271 AE009950 |AE010271| Pyrococcus furiosus DSM 3 (2982 nt) initn: 116 init1: 116 opt: 116 Z-score: 93.2 bits: 26.6 E(): 1.4 banded Smith-Waterman score: 161; 73.8% identity (73.8% similar) in 61 nt overlap (17-77:110-170) 10 20 30 40 U00096 AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAG :::::: ::: :::: : :::: ::: AE0102 CGTAAGTGGGAAAGGGCCCGTGGTCTAGACTGGTTATGACGCCGCCCTCACAAGGCGGAG 80 90 100 110 120 130 50 60 70 U00096 GTCGGTGGTTCAAGTCCACTCAGGCCTACCA ::: : ::::::: ::: : : :::: :::: AE0102 GTCCGGGGTTCAAATCCCCGCGGGCCCACCAAAAGCGCAGAGATGATGACCGGTTTCGGA 140 150 160 170 180 190 AE0102 TCCGATGGATGAGGACATCAGCTATCGCTGATCTCTCATTCTATTCTAATTCCCCAAAAT 200 210 220 230 240 250 >>AE010257 AE009950 |AE010257| Pyrococcus furiosus DSM 3 (14506 nt) rev-comp initn: 115 init1: 115 opt: 115 Z-score: 80.0 bits: 26.5 E(): 1.6 banded Smith-Waterman score: 123; 68.4% identity (68.4% similar) in 57 nt overlap (63-7:9582-9638) 70 60 50 40 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCA :: ::::::: ::::: : :::: :: AE0102 AACATTATTAAAAACATGGAGCCCCGGCCGGGCTTTGAACCCGGGACCTGCCGCTTACCA 9560 9570 9580 9590 9600 9610 30 20 10 U0009- GGGGTGCGCTCTAACCACCTGAGCTACAAGCCT : : ::::::: : :::::: :: AE0102 AGCGGCCGCTCTACCAGGCTGAGCCACCGGGGCATTGTCGGAGTTTTCTCGCTCGAGAGG 9620 9630 9640 9650 9660 9670 >>AE010172 AE009950 |AE010172| Pyrococcus furiosus DSM 3 (10586 nt) initn: 114 init1: 89 opt: 114 Z-score: 81.9 bits: 26.4 E(): 1.7 banded Smith-Waterman score: 148; 67.5% identity (67.5% similar) in 77 nt overlap (2-77:476-552) 10 20 30 U00096 AGGCTTGTAGCTCAG-GTGGTTAGAGCGCAC ::: ::::::::: :::::::::: : AE0101 AACTTCTGGATACTTACCCACCAATGGGTGGGCCGGTAGCTCAGCCTGGTTAGAGCACCG 450 460 470 480 490 500 40 50 60 70 U00096 CCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA :: ::: : ::::: ::::::: ::: : :::: ::: AE0101 GGCTTTTAACCCGGTGGTCGCGGGTTCAAATCCCGCCCGGCCCGCCATGAATATAAACCT 510 520 530 540 550 560 AE0101 CCATTCTTATCACCTCATGATGCGGGGTGGTGGAATATCTTAATTATGGGAATTGATATT 570 580 590 600 610 620 >>AE010130 AE009950 |AE010130| Pyrococcus furiosus DSM 3 (8716 nt) rev-comp initn: 111 init1: 86 opt: 111 Z-score: 81.7 bits: 26.1 E(): 2.1 banded Smith-Waterman score: 88; 87.0% identity (87.0% similar) in 23 nt overlap (76-54:5698-5720) 70 60 50 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGAC :: :::::::::: :::::::: AE0101 TCTTCAATTTGCCATGGAAGGGATGTTGGAGGATGGCCTGAGTGAACTTGAACATGAACG 5670 5680 5690 5700 5710 5720 40 30 20 10 U0009- CTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCT AE0101 TTGAACTCCTCCGCTATTCTCATAATATCCTCAACTTTGGGATCTGCGGGGGAGAACATG 5730 5740 5750 5760 5770 5780 >>AE010163 AE009950 |AE010163| Pyrococcus furiosus DSM 3 (14843 nt) rev-comp initn: 111 init1: 61 opt: 111 Z-score: 77.5 bits: 26.0 E(): 2.1 banded Smith-Waterman score: 61; 92.9% identity (92.9% similar) in 14 nt overlap (48-35:10328-10341) 70 60 50 40 30 20 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAAC :::::: ::::::: AE0101 AACGAGAATGTCCTCTCTCTTCATATGGGCACCTCAACCTTATCTAAAATTTCCTTGATT 10300 10310 10320 10330 10340 10350 10 U0009- CACCTGAGCTACAAGCCT AE0101 ACTGTATCTCCTTTAATCCCCTCTATTTCATATTCAGGCTTGACTATAAGCCTGTGAGCG 10360 10370 10380 10390 10400 10410 >>AE010293 AE009950 |AE010293| Pyrococcus furiosus DSM 3 (9294 nt) initn: 110 init1: 55 opt: 110 Z-score: 80.6 bits: 25.9 E(): 2.3 banded Smith-Waterman score: 61; 72.4% identity (72.4% similar) in 29 nt overlap (6-34:3248-3275) 10 20 30 U00096 AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTG : :: ::::::::::: : : ::: :: AE0102 GTAAAAATAATAACCCTTCTTTTTCATAACTCTAAATCAGGTGGTTA-AATGGACCGCTA 3220 3230 3240 3250 3260 3270 40 50 60 70 U00096 ATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA AE0102 TATCCTCTCTTTAGATGAGGGCACAACTTCCGCCAGGGCAATAATATTTGATAAGAACAG 3280 3290 3300 3310 3320 3330 >>AE010236 AE009950 |AE010236| Pyrococcus furiosus DSM 3 (10945 nt) initn: 110 init1: 55 opt: 110 Z-score: 79.3 bits: 25.9 E(): 2.3 banded Smith-Waterman score: 55; 100.0% identity (100.0% similar) in 11 nt overlap (58-68:6276-6286) 30 40 50 60 70 U00096 CACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA ::::::::::: AE0102 GATGTTTTCAAAAGGCATTCTGTATATCATAAGTCCACTCATATCGGATTTTGATAGCAC 6250 6260 6270 6280 6290 6300 AE0102 TACAAAGGACATGTTTCCTGGAAGATCGGGAACTGTAATCTTAAGGTAAGAGCCCGCAGG 6310 6320 6330 6340 6350 6360 >>AE010149 AE009950 |AE010149| Pyrococcus furiosus DSM 3 (12854 nt) rev-comp initn: 110 init1: 55 opt: 110 Z-score: 78.0 bits: 25.9 E(): 2.3 banded Smith-Waterman score: 55; 100.0% identity (100.0% similar) in 11 nt overlap (41-31:4770-4780) 70 60 50 40 30 20 U0009- GCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGA ::::::::::: AE0101 AGCCCTAAAGCTTGTCGCCGAGGGGGCGCTCCTTATCAGGGCAGAGAGCGTCTCCTTCGC 4740 4750 4760 4770 4780 4790 10 U0009- GCTACAAGCCT AE0101 TATCTCAAGGCTCTTCCCAAAGCGGACAATCTCTCCAATGTAGGCCCCGAGGAGATCTTC 4800 4810 4820 4830 4840 4850 >>AE010251 AE009950 |AE010251| Pyrococcus furiosus DSM 3 (11316 nt) rev-comp initn: 109 init1: 59 opt: 109 Z-score: 78.5 bits: 25.8 E(): 2.5 banded Smith-Waterman score: 60; 76.2% identity (76.2% similar) in 21 nt overlap (25-5:7179-7199) 50 40 30 20 10 U0009- ACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCT : ::::::: :: :::::: AE0102 CCTGAGATGCAAATAAGAGGGGAGTCTTAACCCTAACCAGCTCTTCTACAACTTTTCCAT 7150 7160 7170 7180 7190 7200 AE0102 CTAGGTCAAGTGTAACAGTATATACCCCAGGCTCATTAACTTCATACTCTATTTTTCCAT 7210 7220 7230 7240 7250 7260 >>AE010218 AE009950 |AE010218| Pyrococcus furiosus DSM 3 (14175 nt) rev-comp initn: 108 init1: 53 opt: 108 Z-score: 76.1 bits: 25.7 E(): 2.7 banded Smith-Waterman score: 53; 81.2% identity (81.2% similar) in 16 nt overlap (74-59:2332-2347) 70 60 50 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGACCT :::::: ::::::: AE0102 CCCCTTCACGTACTTTACCCCTCCCCATATTAGGCCATGGTGGACTATGAGCATGTCTGC 2310 2320 2330 2340 2350 2360 40 30 20 10 U0009- CACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCT AE0102 ATTGAAGGCCCTAGCTTTAACTATTGTGTCCAAACATGCATCTACCGCAAATGCTATCGT 2370 2380 2390 2400 2410 2420 >>AE010187 AE009950 |AE010187| Pyrococcus furiosus DSM 3 (11444 nt) initn: 105 init1: 50 opt: 105 Z-score: 76.0 bits: 25.4 E(): 3.3 banded Smith-Waterman score: 51; 91.7% identity (91.7% similar) in 12 nt overlap (19-30:3714-3725) 10 20 30 40 U00096 AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGT : :::::::::: AE0101 CAGGGCGCTCAAGAAGTCGAGGGGAGTTGAGGTAGAGCGCACTGCCGCTCCCTCCTTGAG 3690 3700 3710 3720 3730 3740 50 60 70 U00096 CGGTGGTTCAAGTCCACTCAGGCCTACCA AE0101 AAAACTGGTCGTGCTCTCGGTTGTCTGGATTATCTCTGGAGTCGTCTTCTCCACATTGGA 3750 3760 3770 3780 3790 3800 >>AE010206 AE009950 |AE010206| Pyrococcus furiosus DSM 3 (12958 nt) initn: 105 init1: 55 opt: 105 Z-score: 75.0 bits: 25.4 E(): 3.3 banded Smith-Waterman score: 57; 70.8% identity (70.8% similar) in 24 nt overlap (37-60:4614-4637) 10 20 30 40 50 60 U00096 GTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACT ::::::::::: : : : : :: AE0102 TAATCTGAGTTGCGTCTTTAGCCCTTACACTAAGGGTGAGGCCAATAGGTATAGCAAAAA 4590 4600 4610 4620 4630 4640 70 U00096 CAGGCCTACCA AE0102 GAAGCATTGATATTGACATAGCGACCGTCAAAAACATATAGCCCAGTGTAGGCGTCCATA 4650 4660 4670 4680 4690 4700 >>AE010228 AE009950 |AE010228| Pyrococcus furiosus DSM 3 (10584 nt) initn: 100 init1: 50 opt: 100 Z-score: 73.6 bits: 24.8 E(): 4.8 banded Smith-Waterman score: 50; 100.0% identity (100.0% similar) in 10 nt overlap (56-65:8487-8496) 30 40 50 60 70 U00096 CGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA :::::::::: AE0102 TCTCGGCAATCTCTCCAAGCAGTTCATCCGTCAAGTCCACAATTTTAACGATGTCCCTCA 8460 8470 8480 8490 8500 8510 AE0102 GCTTTTGGACTTCCTCTTTTGGATTCTTCCCCTTGAAGGCCTTTGCCAAGAGATAAGCGT 8520 8530 8540 8550 8560 8570 >>AE010154 AE009950 |AE010154| Pyrococcus furiosus DSM 3 (14227 nt) rev-comp initn: 100 init1: 50 opt: 100 Z-score: 71.3 bits: 24.8 E(): 4.8 banded Smith-Waterman score: 54; 93.3% identity (93.3% similar) in 15 nt overlap (18-5:11831-11845) 40 30 20 10 U0009- ACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCT-ACAAGCCT :::::::::: :::: AE0101 TAATCCCAGGAATTAGCGTGGCTGGAGCTACACCTGAGCTCACAAAGTATACGCCTCCTG 11810 11820 11830 11840 11850 11860 AE0101 CTGATGCGGAATACCTCTTTTATGATAAGCCCAAGATAATAGATGCAATCCCAGTTACTC 11870 11880 11890 11900 11910 11920 >>AE010135 AE009950 |AE010135| Pyrococcus furiosus DSM 3 (13488 nt) rev-comp initn: 100 init1: 50 opt: 100 Z-score: 71.7 bits: 24.8 E(): 4.8 banded Smith-Waterman score: 50; 100.0% identity (100.0% similar) in 10 nt overlap (64-55:696-705) 70 60 50 40 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATC :::::::::: AE0101 AATGTCTTTCTGTCCTCTAATTGCCATTCATGGACTTGAATTGGCTCCATCTGCCTGTGA 670 680 690 700 710 720 30 20 10 U0009- AGGGGTGCGCTCTAACCACCTGAGCTACAAGCCT AE0101 TCCCCGACCAAGAGAACTTGACCTTTACAAACTTTTGTTGAGAGGAAGAACATTGGTAAG 730 740 750 760 770 780 >>AE010250 AE009950 |AE010250| Pyrococcus furiosus DSM 3 (10843 nt) rev-comp initn: 98 init1: 98 opt: 98 Z-score: 72.3 bits: 24.6 E(): 5.6 banded Smith-Waterman score: 157; 68.8% identity (68.8% similar) in 77 nt overlap (77-2:5791-5867) 70 60 50 U0009- TGGTAGGCCTGAGTGGACTTGAACCACCGA ::: :::: : : ::: ::::::: :::: AE0102 CTCTCATATCTCTTCCCTGAGAACAATTGCTGGCGGGCCGGGGGGGATTTGAACCCCCGA 5770 5780 5790 5800 5810 5820 40 30 20 10 U0009- CCTCACCCTTATCAGGGGTGCGCTCTAACCA-CCTGAGCTACAAGCCT ::: ::: :: ::::::::::: :: :::::: ::: AE0102 CCTGCGGATTAAGAGTCCGCCGCTCTAACCAGGCTAAGCTACCGGCCCACTAGTCCCGAG 5830 5840 5850 5860 5870 5880 AE0102 TTCAGATGAGAAGATGCGAGTTTATAAGTTTTTCGCTAAAGTAGGTGAGGAAACCGTTAA 5890 5900 5910 5920 5930 5940 77 residues in 1 query sequences 1918246 residues in 173 library sequences Scomplib [35.02] start: Mon Dec 3 02:01:34 2007 done: Mon Dec 3 02:02:19 2007 Total Scan time: 0.930 Total Display time: 0.010 Function used was FASTA [version 35.02 September 18, 2007]