RID: 43ZR69N2016 Job Title:Papain-like protease nsp3 P0C6F8 OS=Bat coronavirus... Program: BLASTP Query: Papain-like protease nsp3 P0C6F8 OS=Bat coronavirus HKU3 (BtCoV) (SARS-like coronavirus HKU3) Short=PL-PRO ID: lcl|Query_4496654(amino acid) Length: 1916 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS cor... NA 442736 3971 3971 100% 0.0 100.00 4376 P0C6F8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 3964 3964 100% 0.0 100.00 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 694009 3591 3591 100% 0.0 91.47 4382 P0C6U8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat SARS CoV... NA 349344 3585 3585 100% 0.0 91.20 4380 P0C6T7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 3585 3585 100% 0.0 91.47 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 3580 3580 100% 0.0 91.20 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat CoV 279/... NA 389167 3544 3544 100% 0.0 90.99 4388 P0C6F5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 3539 3539 100% 0.0 90.99 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Severe acute... NA 2697049 3060 3060 100% 0.0 75.24 4405 P0DTC1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 3052 3052 100% 0.0 75.24 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Pipistrellus... NA 694008 711 869 81% 0.0 32.60 4481 P0C6T5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 709 867 81% 0.0 32.56 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 684 876 96% 0.0 30.62 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 684 876 96% 0.0 30.62 4391 K9N638.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Rousettus ba... NA 694006 670 859 93% 0.0 31.20 4248 P0C6T6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 669 858 93% 0.0 31.20 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 514 669 76% 6e-149 30.10 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 513 667 79% 9e-149 30.10 4383 P0C6T9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 512 667 76% 2e-148 30.10 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 511 665 76% 4e-148 30.10 4383 P0C6T8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 508 662 76% 4e-147 29.62 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 507 660 79% 5e-147 29.62 4383 P0C6U0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 506 657 76% 2e-146 29.93 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 506 656 76% 2e-146 29.93 4383 P0C6U1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 504 656 78% 7e-146 29.06 4383 P0C6U7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 503 655 78% 1e-145 29.06 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 496 627 82% 3e-143 29.07 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 496 626 81% 3e-143 29.07 4416 P0C6U9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 486 641 78% 3e-140 29.49 4468 P0C6V0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 486 640 79% 7e-140 29.49 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 476 637 76% 6e-137 29.87 4441 P0C6U4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 476 637 76% 7e-137 29.76 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 476 635 76% 1e-136 29.76 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 475 634 76% 1e-136 29.87 4471 P0C6U3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 474 611 78% 2e-136 28.88 4474 P0C6V1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 474 611 78% 3e-136 28.88 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 474 633 77% 3e-136 29.87 4421 P0C6U5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 473 632 76% 8e-136 29.76 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Tylonycteris... NA 694007 414 857 72% 6e-117 40.44 4434 P0C6T4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 413 856 72% 8e-117 40.44 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 413 848 72% 1e-116 40.44 4441 P0C6F7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 412 847 72% 2e-116 40.44 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Scotophilus ... NA 693999 186 263 39% 4e-47 26.50 4128 P0C6F6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 187 278 39% 4e-47 28.08 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 11137 186 277 39% 4e-47 28.08 4085 P0C6U2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 186 264 40% 4e-47 26.50 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 176 257 40% 7e-44 27.86 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine epid... NA 229032 175 256 40% 8e-44 27.86 4117 P0C6V6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 172 252 32% 1e-42 28.51 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 277944 171 251 32% 1e-42 28.51 4060 P0C6U6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11127 164 212 32% 2e-40 28.96 3953 P0C6V5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 164 212 32% 3e-40 28.96 6631 P0C6Y3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Avian infect... NA 11122 161 211 31% 1e-39 28.66 3951 P0C6V3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 161 210 35% 2e-39 27.00 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 161 210 35% 2e-39 27.00 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Porcine tran... NA 11151 152 212 32% 1e-36 26.65 4017 P0C6V2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 152 212 32% 1e-36 26.65 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 144 201 33% 3e-34 25.96 6709 Q98VG9.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 53.5 53.5 5% 9e-07 35.65 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 53.5 53.5 5% 1e-06 35.65 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 53.1 53.1 5% 1e-06 34.78 2485 P36327.3 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... White bream ... NA 766180 39.7 39.7 6% 0.015 27.78 4555 Q008X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 39.3 39.3 6% 0.018 27.78 6872 Q008X6.1 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS coronavirus HKU3] Sequence ID: P0C6F8.1 Length: 4376 Range 1: 819 to 2734 Score:3971 bits(10298), Expect:0.0, Method:Compositional matrix adjust., Identities:1916/1916(100%), Positives:1916/1916(100%), Gaps:0/1916(0%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 938 Query 121 DEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPV 180 DEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPV Sbjct 939 DEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPV 998 Query 181 NQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQN 240 NQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQN Sbjct 999 NQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQN 1058 Query 241 ESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLL 300 ESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLL Sbjct 1059 ESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLL 1118 Query 301 APLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEE 360 APLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEE Sbjct 1119 APLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEE 1178 Query 361 EPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQ 420 EPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQ Sbjct 1179 EPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQ 1238 Query 421 NMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITT 480 NMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITT Sbjct 1239 NMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITT 1298 Query 481 YPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKL 540 YPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKL Sbjct 1299 YPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKL 1358 Query 541 MPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTM 600 MPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTM Sbjct 1359 MPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTM 1418 Query 601 PIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLA 660 PIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLA Sbjct 1419 PIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLA 1478 Query 661 GSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKT 720 GSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKT Sbjct 1479 GSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKT 1538 Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL Sbjct 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 Query 781 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 840 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE Sbjct 1599 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 1658 Query 841 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 900 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV Sbjct 1659 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 1718 Query 901 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 960 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM Sbjct 1719 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 1778 Query 961 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1020 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF Sbjct 1779 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1838 Query 1021 YKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDN 1080 YKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDN Sbjct 1839 YKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDN 1898 Query 1081 FKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVH 1140 FKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVH Sbjct 1899 FKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVH 1958 Query 1141 KPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTT 1200 KPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTT Sbjct 1959 KPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTT 2018 Query 1201 SEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITI 1260 SEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITI Sbjct 2019 SEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITI 2078 Query 1261 KKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSN 1320 KKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSN Sbjct 2079 KKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSN 2138 Query 1321 YMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLF 1380 YMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLF Sbjct 2139 YMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLF 2198 Query 1381 TIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFP 1440 TIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFP Sbjct 2199 TIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFP 2258 Query 1441 CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIM 1500 CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIM Sbjct 2259 CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIM 2318 Query 1501 QAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSS 1560 QAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSS Sbjct 2319 QAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSS 2378 Query 1561 TCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISD 1620 TCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISD Sbjct 2379 TCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISD 2438 Query 1621 EVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNL 1680 EVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNL Sbjct 2439 EVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNL 2498 Query 1681 RANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS 1740 RANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS Sbjct 2499 RANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS 2558 Query 1741 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVD 1800 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVD Sbjct 2559 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVD 2618 Query 1801 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH 1860 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH Sbjct 2619 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH 2678 Query 1861 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG Sbjct 2679 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 819 to 2734 Score:3964 bits(10281), Expect:0.0, Method:Compositional matrix adjust., Identities:1916/1916(100%), Positives:1916/1916(100%), Gaps:0/1916(0%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE Sbjct 879 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 938 Query 121 DEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPV 180 DEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPV Sbjct 939 DEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEEPV 998 Query 181 NQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQN 240 NQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQN Sbjct 999 NQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQN 1058 Query 241 ESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLL 300 ESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLL Sbjct 1059 ESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLL 1118 Query 301 APLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEE 360 APLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEE Sbjct 1119 APLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEE 1178 Query 361 EPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQ 420 EPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQ Sbjct 1179 EPKLEEPKAVQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQ 1238 Query 421 NMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITT 480 NMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITT Sbjct 1239 NMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVAEYITT 1298 Query 481 YPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKL 540 YPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKL Sbjct 1299 YPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKL 1358 Query 541 MPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTM 600 MPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTM Sbjct 1359 MPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTM 1418 Query 601 PIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLA 660 PIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLA Sbjct 1419 PIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLA 1478 Query 661 GSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKT 720 GSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKT Sbjct 1479 GSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKT 1538 Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL Sbjct 1539 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 1598 Query 781 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 840 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE Sbjct 1599 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 1658 Query 841 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 900 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV Sbjct 1659 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 1718 Query 901 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 960 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM Sbjct 1719 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 1778 Query 961 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1020 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF Sbjct 1779 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1838 Query 1021 YKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDN 1080 YKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDN Sbjct 1839 YKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDN 1898 Query 1081 FKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVH 1140 FKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVH Sbjct 1899 FKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVH 1958 Query 1141 KPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTT 1200 KPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTT Sbjct 1959 KPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTT 2018 Query 1201 SEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITI 1260 SEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITI Sbjct 2019 SEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEETSITI 2078 Query 1261 KKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSN 1320 KKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSN Sbjct 2079 KKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSN 2138 Query 1321 YMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLF 1380 YMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLF Sbjct 2139 YMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLF 2198 Query 1381 TIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFP 1440 TIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFP Sbjct 2199 TIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFP 2258 Query 1441 CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIM 1500 CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIM Sbjct 2259 CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIM 2318 Query 1501 QAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSS 1560 QAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSS Sbjct 2319 QAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSS 2378 Query 1561 TCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISD 1620 TCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISD Sbjct 2379 TCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISD 2438 Query 1621 EVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNL 1680 EVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNL Sbjct 2439 EVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNL 2498 Query 1681 RANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS 1740 RANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS Sbjct 2499 RANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVS 2558 Query 1741 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVD 1800 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVD Sbjct 2559 VKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVD 2618 Query 1801 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH 1860 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH Sbjct 2619 TKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSH 2678 Query 1861 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG Sbjct 2679 NVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 2734 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6U8.1 Length: 4382 Range 1: 819 to 2740 Score:3591 bits(9313), Expect:0.0, Method:Compositional matrix adjust., Identities:1759/1923(91%), Positives:1829/1923(95%), Gaps:8/1923(0%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP+KGVTFGEDTV EVQGYKNV+ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 121 DEEETCE---HEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP---EPEP 174 +EEE E HEYGTEDDY+GLPLEFGAS ET VEEEEEE DWLDD E EPEP Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEE-DWLDDTTEQSEIEPEPEP 997 Query 175 LPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKAT 234 PEEPVNQF GYLKLTDNVAIKC+DIVKEAQSA P VIVNAAN HLKHGGGVAGALNKAT Sbjct 998 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 1057 Query 235 NGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFN 294 NGAMQ ESD+YI+ NGPLTVGGSCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFN Sbjct 1058 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 1117 Query 295 SQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVE 354 SQD+LLAPLLSAGIFGAKPLQSL++CV+ VRTQVY+AVNDK+LY+Q+V+DYLD+LKP+VE Sbjct 1118 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 1177 Query 355 SPNKEEEPKLEEPKAVQ-PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 413 +P +EE P E+ K + V +KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING Sbjct 1178 APKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 1237 Query 414 KLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVP 473 KLY DSQNMLRGEDMSFLEKDAPY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP Sbjct 1238 KLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 1297 Query 474 VAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAH 533 V EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSE PN KEE+LGTVSWNLREMLAH Sbjct 1298 VDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAH 1357 Query 534 AEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSL 593 AEETRKLMPIC+DVRAIMATIQRKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSL Sbjct 1358 AEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 1417 Query 594 NEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYF 653 NEPLVTMPIGYVTHG NLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+F Sbjct 1418 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHF 1477 Query 654 VETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLL 713 VET SLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT SP+EFHLDGEVL LDKLKSLL Sbjct 1478 VETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLL 1537 Query 714 SLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 773 SLREVKTIKVFTTVDNTNLHT +VDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV Sbjct 1538 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 1597 Query 774 LPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 833 LPSDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL Sbjct 1598 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1657 Query 834 LALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 893 LALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN Sbjct 1658 LALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1717 Query 894 LESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQ 953 LESAKRVLNVVCKHCGQKTTTL GVEAVMYMGTLSYD LKTGVSIPCVCGR+ATQYLVQQ Sbjct 1718 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 1777 Query 954 ESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYK 1013 ESSFVMMSAPPAEYKLQQG FLCANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYK Sbjct 1778 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1837 Query 1014 GPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPM 1073 GPVTDVFYKETSYTT IKPVSYKLDGVTYTEIEPKLDGYYKK NAYYTEQPIDLVPTQP+ Sbjct 1838 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPL 1897 Query 1074 PNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFK 1133 PNASFDNFKLTCSNTKFADDLNQMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFK Sbjct 1898 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1957 Query 1134 KGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLA 1193 KGAKL+HKPI+WHINQ T KTT+KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLA Sbjct 1958 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 2017 Query 1194 CESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYV 1253 CESQ TSEEVVENPT+QKE+IECDVKTTEVVGNVILKPS+EGVKVTQELGHEDLMAAYV Sbjct 2018 CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYV 2077 Query 1254 EETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKC 1313 E TSITIKKPNELSLALGLKT+ATHG AAINSVPWSKILAYVKPFLGQ A+ TSNC K+ Sbjct 2078 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRL 2137 Query 1314 VQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKS 1373 QRVF+NYMPYV TLLFQLCTFTKSTNSRI+ASLPTTIAKNSVKSVAKLCLD INYVKS Sbjct 2138 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 2197 Query 1374 PKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMD 1433 PKFSKLFTI MWLLLLSICLGSL VTA GV LS+ G PSYC+GVRELY+NSSNVTTMD Sbjct 2198 PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMD 2257 Query 1434 FCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 1493 FC+G FPCS+CLSGLDSLDSYPALETIQVTISSYKLDLT LGLAAEW+LAYMLFTKFFYL Sbjct 2258 FCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYL 2317 Query 1494 LGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHI 1553 LGLSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHI Sbjct 2318 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 2377 Query 1554 MDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCA 1613 MDGCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFC Sbjct 2378 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT 2437 Query 1614 GSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSH 1673 GSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSV VKNGALHLYFDKAGQKTYERHPLSH Sbjct 2438 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSH 2497 Query 1674 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDV 1733 FVNLDNLRANNTKGSLPINVIVFDGKSKC+ESA+KSASVYYSQLMCQPILLLDQALVSDV Sbjct 2498 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDV 2557 Query 1734 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1793 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG Sbjct 2558 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 2617 Query 1794 VVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 1853 VVDTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN Sbjct 2618 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 2677 Query 1854 AQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 1913 AQVAKSHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL Sbjct 2678 AQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 2737 Query 1914 KGG 1916 KGG Sbjct 2738 KGG 2740 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6T7.1 Length: 4380 Range 1: 819 to 2738 Score:3585 bits(9297), Expect:0.0, Method:Compositional matrix adjust., Identities:1752/1921(91%), Positives:1831/1921(95%), Gaps:6/1921(0%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP KGVTFGEDTV+EVQGYKNV+ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDD+GEEKLSSRMYCSFYPPDEEEDCEE E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 DEE----ETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLP 176 +EE TCEHEYGTE+DYKGLPLEFGAST+ VEE+EEE DWLDDA+EAEPEPEPL Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEE-DWLDDAVEAEPEPEPLH 997 Query 177 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 236 EEPVNQ GYLKLTDNVAIKC+DIV+EAQ+A P VIVNAAN HLKHGGGVAGALNKATNG Sbjct 998 EEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNG 1057 Query 237 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQ 296 AMQ ESD YI+ NGPLTVGGSCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFNSQ Sbjct 1058 AMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQ 1117 Query 297 DVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESP 356 D+LLAPLLSAGIFGAKPLQSL+MCV+ VRTQVY+ VNDK LY+Q+V+DYLDSLKPKVE+P Sbjct 1118 DILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPKVEAP 1177 Query 357 NKEEEPKLEEPKA-VQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKL 415 +E PK E PK + V +K +DVKPKIKACIDEVTTTLEETKFLTNKLLLF DINGKL Sbjct 1178 KQEVLPKAEYPKVDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKLLLFTDINGKL 1237 Query 416 YQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVA 475 YQDS+NMLRGEDMSFLEKDAPY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP+ Sbjct 1238 YQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPIN 1297 Query 476 EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAE 535 EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPN KEE+LGTVSWNLREMLAHAE Sbjct 1298 EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSWNLREMLAHAE 1357 Query 536 ETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNE 595 ETRKLMP+C+DVRAIMATIQRKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSLNE Sbjct 1358 ETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNE 1417 Query 596 PLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVE 655 PLVTMPIGYVTHG NLEEAARCMRSLKAPA+VSVSSPDAVT YNGYLTSSSKT E++FVE Sbjct 1418 PLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVE 1477 Query 656 TTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSL 715 T SLAGSYRDWSYSGQRTELGVEFLKRG+KIVYHT SP++FHLDGEVLPLDKLKSLLSL Sbjct 1478 TVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLPLDKLKSLLSL 1537 Query 716 REVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLP 775 REVKTIKVFTTVDNTNLHT +VDMSMTYGQQ GPTYL+GADVTKIKPHVNHEGKTFFVLP Sbjct 1538 REVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFFVLP 1597 Query 776 SDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 835 SDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA Sbjct 1598 SDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 1657 Query 836 LQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE 895 LQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE Sbjct 1658 LQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE 1717 Query 896 SAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQES 955 SAKRVLNVVCKHCGQKTTTL GVEAVMYMGTLSYD LK GVSIPCVCGR+ATQYLVQQES Sbjct 1718 SAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDATQYLVQQES 1777 Query 956 SFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGP 1015 SFVMMSAPPAEYKLQQG FLCANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYKGP Sbjct 1778 SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGP 1837 Query 1016 VTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPN 1075 VTDVFYKETSYTT IKPVSYKLDGVTYTEIEPKLDGYYKK NAYYTEQPIDL+PTQP+PN Sbjct 1838 VTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIPTQPLPN 1897 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKG 1135 ASFDNFKLTCSNTKFADDLNQMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFKKG Sbjct 1898 ASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKG 1957 Query 1136 AKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACE 1195 AKL+HKPI+WHINQ T KTT+KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLACE Sbjct 1958 AKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACE 2017 Query 1196 SQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEE 1255 SQ T EEVVENPT+QKE+IECDVKTTEVVGNVILKPS+EGVKVTQEL HEDLMAAYVE Sbjct 2018 SQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDHEDLMAAYVEN 2077 Query 1256 TSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQ 1315 TSITIKKPNELSLALGLKT+ATHG AAINSVPW KILAYVKPFLGQ AV TSNC K+ VQ Sbjct 2078 TSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVTTSNCAKRLVQ 2137 Query 1316 RVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPK 1375 R+F+NYMPYV+TLLFQLCTFTKSTNSRI+ASLPTTIAKNSV+ + +LCLD INYVKSPK Sbjct 2138 RMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLDAGINYVKSPK 2197 Query 1376 FSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFC 1435 FSKLFTI MWLLLLSICLGSL YVTA LGV LS+ G PSYC GVRE Y+NSSNVTTMDFC Sbjct 2198 FSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLNSSNVTTMDFC 2257 Query 1436 QGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLG 1495 +G FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLT LGLAAEW AYMLFTKFFYLLG Sbjct 2258 EGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYMLFTKFFYLLG 2317 Query 1496 LSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMD 1555 LSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHIMD Sbjct 2318 LSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMD 2377 Query 1556 GCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGS 1615 GCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFCAGS Sbjct 2378 GCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCAGS 2437 Query 1616 TFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFV 1675 TFISDEVARDLSLQFKRPINPTDQS+YVVDSV VKNGALHLYFDKAGQKTYERHPLSHFV Sbjct 2438 TFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFV 2497 Query 1676 NLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGD 1735 NLDNLRANNTKGSLPINVIVFDGKSKC+ESAAKSASVYYSQLMCQPILLLDQALVSDVGD Sbjct 2498 NLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGD 2557 Query 1736 STEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVV 1795 STEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSA+RQGVV Sbjct 2558 STEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSASRQGVV 2617 Query 1796 DTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQ 1855 DTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQ Sbjct 2618 DTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQ 2677 Query 1856 VAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKG 1915 VA+SHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKG Sbjct 2678 VARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKG 2737 Query 1916 G 1916 G Sbjct 2738 G 2738 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 819 to 2740 Score:3585 bits(9295), Expect:0.0, Method:Compositional matrix adjust., Identities:1759/1923(91%), Positives:1829/1923(95%), Gaps:8/1923(0%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP+KGVTFGEDTV EVQGYKNV+ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDDAGEE SSRMYCSFYPPDEEE+ + Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAEC 938 Query 121 DEEETCE---HEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEP---EPEP 174 +EEE E HEYGTEDDY+GLPLEFGAS ET VEEEEEE DWLDD E EPEP Sbjct 939 EEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEE-DWLDDTTEQSEIEPEPEP 997 Query 175 LPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKAT 234 PEEPVNQF GYLKLTDNVAIKC+DIVKEAQSA P VIVNAAN HLKHGGGVAGALNKAT Sbjct 998 TPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKAT 1057 Query 235 NGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFN 294 NGAMQ ESD+YI+ NGPLTVGGSCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFN Sbjct 1058 NGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFN 1117 Query 295 SQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVE 354 SQD+LLAPLLSAGIFGAKPLQSL++CV+ VRTQVY+AVNDK+LY+Q+V+DYLD+LKP+VE Sbjct 1118 SQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVE 1177 Query 355 SPNKEEEPKLEEPKAVQ-PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 413 +P +EE P E+ K + V +KPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING Sbjct 1178 APKQEEPPNTEDSKTEEKSVVQKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADING 1237 Query 414 KLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVP 473 KLY DSQNMLRGEDMSFLEKDAPY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP Sbjct 1238 KLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVP 1297 Query 474 VAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAH 533 V EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSE PN KEE+LGTVSWNLREMLAH Sbjct 1298 VDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWNLREMLAH 1357 Query 534 AEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSL 593 AEETRKLMPIC+DVRAIMATIQRKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSL Sbjct 1358 AEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSL 1417 Query 594 NEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYF 653 NEPLVTMPIGYVTHG NLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTSSSKT EE+F Sbjct 1418 NEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHF 1477 Query 654 VETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLL 713 VET SLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHT SP+EFHLDGEVL LDKLKSLL Sbjct 1478 VETVSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLL 1537 Query 714 SLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 773 SLREVKTIKVFTTVDNTNLHT +VDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV Sbjct 1538 SLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV 1597 Query 774 LPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 833 LPSDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL Sbjct 1598 LPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVL 1657 Query 834 LALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 893 LALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN Sbjct 1658 LALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHAN 1717 Query 894 LESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQ 953 LESAKRVLNVVCKHCGQKTTTL GVEAVMYMGTLSYD LKTGVSIPCVCGR+ATQYLVQQ Sbjct 1718 LESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQ 1777 Query 954 ESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYK 1013 ESSFVMMSAPPAEYKLQQG FLCANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYK Sbjct 1778 ESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYK 1837 Query 1014 GPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPM 1073 GPVTDVFYKETSYTT IKPVSYKLDGVTYTEIEPKLDGYYKK NAYYTEQPIDLVPTQP+ Sbjct 1838 GPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPL 1897 Query 1074 PNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFK 1133 PNASFDNFKLTCSNTKFADDLNQMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFK Sbjct 1898 PNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFK 1957 Query 1134 KGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLA 1193 KGAKL+HKPI+WHINQ T KTT+KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLA Sbjct 1958 KGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLA 2017 Query 1194 CESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYV 1253 CESQ TSEEVVENPT+QKE+IECDVKTTEVVGNVILKPS+EGVKVTQELGHEDLMAAYV Sbjct 2018 CESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYV 2077 Query 1254 EETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKC 1313 E TSITIKKPNELSLALGLKT+ATHG AAINSVPWSKILAYVKPFLGQ A+ TSNC K+ Sbjct 2078 ENTSITIKKPNELSLALGLKTIATHGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRL 2137 Query 1314 VQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKS 1373 QRVF+NYMPYV TLLFQLCTFTKSTNSRI+ASLPTTIAKNSVKSVAKLCLD INYVKS Sbjct 2138 AQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKS 2197 Query 1374 PKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMD 1433 PKFSKLFTI MWLLLLSICLGSL VTA GV LS+ G PSYC+GVRELY+NSSNVTTMD Sbjct 2198 PKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNSSNVTTMD 2257 Query 1434 FCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 1493 FC+G FPCS+CLSGLDSLDSYPALETIQVTISSYKLDLT LGLAAEW+LAYMLFTKFFYL Sbjct 2258 FCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYL 2317 Query 1494 LGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHI 1553 LGLSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHI Sbjct 2318 LGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHI 2377 Query 1554 MDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCA 1613 MDGCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFC Sbjct 2378 MDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCT 2437 Query 1614 GSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSH 1673 GSTFISDEVARDLSLQFKRPINPTDQS+Y+VDSV VKNGALHLYFDKAGQKTYERHPLSH Sbjct 2438 GSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSH 2497 Query 1674 FVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDV 1733 FVNLDNLRANNTKGSLPINVIVFDGKSKC+ESA+KSASVYYSQLMCQPILLLDQALVSDV Sbjct 2498 FVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDV 2557 Query 1734 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1793 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG Sbjct 2558 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 2617 Query 1794 VVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 1853 VVDTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN Sbjct 2618 VVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHIN 2677 Query 1854 AQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 1913 AQVAKSHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL Sbjct 2678 AQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISL 2737 Query 1914 KGG 1916 KGG Sbjct 2738 KGG 2740 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 819 to 2738 Score:3580 bits(9283), Expect:0.0, Method:Compositional matrix adjust., Identities:1752/1921(91%), Positives:1831/1921(95%), Gaps:6/1921(0%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP KGVTFGEDTV+EVQGYKNV+ITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APTKGVTFGEDTVVEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDD+GEEKLSSRMYCSFYPPDEEEDCEE E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDSGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 DEE----ETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLP 176 +EE TCEHEYGTE+DYKGLPLEFGAST+ VEE+EEE DWLDDA+EAEPEPEPL Sbjct 939 EEEEVSERTCEHEYGTEEDYKGLPLEFGASTDIIQVEEQEEE-DWLDDAVEAEPEPEPLH 997 Query 177 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 236 EEPVNQ GYLKLTDNVAIKC+DIV+EAQ+A P VIVNAAN HLKHGGGVAGALNKATNG Sbjct 998 EEPVNQLTGYLKLTDNVAIKCVDIVEEAQNANPMVIVNAANIHLKHGGGVAGALNKATNG 1057 Query 237 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQ 296 AMQ ESD YI+ NGPLTVGGSCLLSGHNLA+KCLHVVGPNLNAGED+QLLK AYENFNSQ Sbjct 1058 AMQKESDHYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQ 1117 Query 297 DVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESP 356 D+LLAPLLSAGIFGAKPLQSL+MCV+ VRTQVY+ VNDK LY+Q+V+DYLDSLKPKVE+P Sbjct 1118 DILLAPLLSAGIFGAKPLQSLQMCVQTVRTQVYIVVNDKVLYEQVVMDYLDSLKPKVEAP 1177 Query 357 NKEEEPKLEEPKA-VQPVAEKPVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKL 415 +E PK E PK + V +K +DVKPKIKACIDEVTTTLEETKFLTNKLLLF DINGKL Sbjct 1178 KQEVLPKAEYPKVDEKSVVQKTIDVKPKIKACIDEVTTTLEETKFLTNKLLLFTDINGKL 1237 Query 416 YQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEMLARALKEVPVA 475 YQDS+NMLRGEDMSFLEKDAPY+VGDVITSGDITCV+IP+KK+GGTTEML+RALK+VP+ Sbjct 1238 YQDSKNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPIN 1297 Query 476 EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVSWNLREMLAHAE 535 EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPN KEE+LGTVSWNLREMLAHAE Sbjct 1298 EYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNAKEEILGTVSWNLREMLAHAE 1357 Query 536 ETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNE 595 ETRKLMP+C+DVRAIMATIQRKYKGIK+QEGIVDYGVRFFFYTSKEPVASIITKLNSLNE Sbjct 1358 ETRKLMPVCMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNE 1417 Query 596 PLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVE 655 PLVTMPIGYVTHG NLEEAARCMRSLKAPA+VSVSSPDAVT YNGYLTSSSKT E++FVE Sbjct 1418 PLVTMPIGYVTHGFNLEEAARCMRSLKAPAIVSVSSPDAVTTYNGYLTSSSKTSEDHFVE 1477 Query 656 TTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSL 715 T SLAGSYRDWSYSGQRTELGVEFLKRG+KIVYHT SP++FHLDGEVLPLDKLKSLLSL Sbjct 1478 TVSLAGSYRDWSYSGQRTELGVEFLKRGEKIVYHTLESPVKFHLDGEVLPLDKLKSLLSL 1537 Query 716 REVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLP 775 REVKTIKVFTTVDNTNLHT +VDMSMTYGQQ GPTYL+GADVTKIKPHVNHEGKTFFVLP Sbjct 1538 REVKTIKVFTTVDNTNLHTQLVDMSMTYGQQLGPTYLEGADVTKIKPHVNHEGKTFFVLP 1597 Query 776 SDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 835 SDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA Sbjct 1598 SDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLA 1657 Query 836 LQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE 895 LQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE Sbjct 1658 LQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE 1717 Query 896 SAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQES 955 SAKRVLNVVCKHCGQKTTTL GVEAVMYMGTLSYD LK GVSIPCVCGR+ATQYLVQQES Sbjct 1718 SAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKMGVSIPCVCGRDATQYLVQQES 1777 Query 956 SFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGP 1015 SFVMMSAPPAEYKLQQG FLCANEYTGNYQCGHYTHITAKETLYR+DGAHLTKMSEYKGP Sbjct 1778 SFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGP 1837 Query 1016 VTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPN 1075 VTDVFYKETSYTT IKPVSYKLDGVTYTEIEPKLDGYYKK NAYYTEQPIDL+PTQP+PN Sbjct 1838 VTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLIPTQPLPN 1897 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKG 1135 ASFDNFKLTCSNTKFADDLNQMTGF KPASREL+VTFFPDLNGDVVAIDYRHYS SFKKG Sbjct 1898 ASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYRHYSASFKKG 1957 Query 1136 AKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACE 1195 AKL+HKPI+WHINQ T KTT+KPN WCLRCLWSTKPVDTSNSFEVL VEDTQGMDNLACE Sbjct 1958 AKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACE 2017 Query 1196 SQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMAAYVEE 1255 SQ T EEVVENPT+QKE+IECDVKTTEVVGNVILKPS+EGVKVTQEL HEDLMAAYVE Sbjct 2018 SQQPTPEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELDHEDLMAAYVEN 2077 Query 1256 TSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQ 1315 TSITIKKPNELSLALGLKT+ATHG AAINSVPW KILAYVKPFLGQ AV TSNC K+ VQ Sbjct 2078 TSITIKKPNELSLALGLKTIATHGIAAINSVPWGKILAYVKPFLGQAAVTTSNCAKRLVQ 2137 Query 1316 RVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPK 1375 R+F+NYMPYV+TLLFQLCTFTKSTNSRI+ASLPTTIAKNSV+ + +LCLD INYVKSPK Sbjct 2138 RMFNNYMPYVLTLLFQLCTFTKSTNSRIRASLPTTIAKNSVRGIVRLCLDAGINYVKSPK 2197 Query 1376 FSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFC 1435 FSKLFTI MWLLLLSICLGSL YVTA LGV LS+ G PSYC GVRE Y+NSSNVTTMDFC Sbjct 2198 FSKLFTIAMWLLLLSICLGSLIYVTAALGVLLSNFGAPSYCSGVRESYLNSSNVTTMDFC 2257 Query 1436 QGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLG 1495 +G FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLT LGLAAEW AYMLFTKFFYLLG Sbjct 2258 EGSFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWFFAYMLFTKFFYLLG 2317 Query 1496 LSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMD 1555 LSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYY+WKSYVHIMD Sbjct 2318 LSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMD 2377 Query 1556 GCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGS 1615 GCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCK HNWNCLNCDTFCAGS Sbjct 2378 GCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCAGS 2437 Query 1616 TFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFV 1675 TFISDEVARDLSLQFKRPINPTDQS+YVVDSV VKNGALHLYFDKAGQKTYERHPLSHFV Sbjct 2438 TFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFV 2497 Query 1676 NLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGD 1735 NLDNLRANNTKGSLPINVIVFDGKSKC+ESAAKSASVYYSQLMCQPILLLDQALVSDVGD Sbjct 2498 NLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGD 2557 Query 1736 STEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVV 1795 STEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSA+RQGVV Sbjct 2558 STEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSASRQGVV 2617 Query 1796 DTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQ 1855 DTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQ Sbjct 2618 DTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQ 2677 Query 1856 VAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKG 1915 VA+SHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKG Sbjct 2678 VARSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKG 2737 Query 1916 G 1916 G Sbjct 2738 G 2738 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005] Sequence ID: P0C6F5.1 Length: 4388 Range 1: 819 to 2746 Score:3544 bits(9189), Expect:0.0, Method:Compositional matrix adjust., Identities:1758/1932(91%), Positives:1837/1932(95%), Gaps:20/1932(1%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 APVKGVTFGEDTVLEVQGYKNVKITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 DEEETCE----HEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLP 176 DEEE E HEYGTEDDYKGLPLEFGASTE V+EEEEE+ L++AI A+PEPEPLP Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDW-LEEAIAAKPEPEPLP 997 Query 177 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 236 EEPVNQF GYLKLTDNVAIKC+DIVKEAQ AKPTVIVNAAN HLKHGGGVAGALNKATNG Sbjct 998 EEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNG 1057 Query 237 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQ 296 AMQ ESD+YI++NGPLTVGGSCLLSGHNLA+KC+HVVGPNLNAGEDVQLLK AY NFNSQ Sbjct 1058 AMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQ 1117 Query 297 DVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESP 356 DVLLAPLLSAGIFGAKPLQSLKMCVE VRTQVY AVND+ LYD +VL YLDSLKPKVE+P Sbjct 1118 DVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETP 1177 Query 357 NKEEEPKLEEPKAVQ------------PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNK 404 +E +L+E AV+ PV EKPVDVK KA I+EV T+LEETKFLT++ Sbjct 1178 T-QENLELKEQPAVETLTQENLELEELPVIEKPVDVK--FKARIEEVNTSLEETKFLTSR 1234 Query 405 LLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEM 464 LLLFADINGKLYQDSQNMLRGEDM FLEKDAPYIVGDVI+SGDITCVIIPAKK+GGTTEM Sbjct 1235 LLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEM 1294 Query 465 LARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVS 524 LA+ALK+VPV+EYITTYPGQGCAGYTLEEAKTAL+KCKS FYVLPS+TPN+KEE+LGTVS Sbjct 1295 LAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVS 1354 Query 525 WNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVA 584 WNLREMLAHAEETRKLM IC+DV+A+M+TI R+YKGIKVQEGIVDYGVRFFFYTSKEPVA Sbjct 1355 WNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVA 1414 Query 585 SIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTS 644 SIITKLN LNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTS Sbjct 1415 SIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTS 1474 Query 645 SSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVL 704 SSKT EE+F+ET SLAG YRDWSYSGQRTELGVEFLKRGDK+VYHT GSPI+FHLDGEVL Sbjct 1475 SSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVL 1534 Query 705 PLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHV 764 LDKLKSLLSLREV+TIKVFTTVDNTNLHT IVDMSMTYGQQFGPTYLDGADVTKIKPH Sbjct 1535 LLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHA 1594 Query 765 NHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWAD 824 HEGKTFFVLPSDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQ+GGLTSIKWAD Sbjct 1595 KHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWAD 1654 Query 825 NNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRET 884 NNCYLSSVLLALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSN+TVGELGDVRET Sbjct 1655 NNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRET 1714 Query 885 MTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGR 944 MTHLLQHANLESAKRVLNVVCK CGQK+TTL GVEAVMYMGTLSY+ELKTGV+IPC+CGR Sbjct 1715 MTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGR 1774 Query 945 NATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGA 1004 +ATQYLVQQESSFVMMSAPP+EY LQQGAFLCANEYTG+YQCGHYTH+T KETLYR+DGA Sbjct 1775 DATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGA 1834 Query 1005 HLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP 1064 +LTKMSEYKGPVTDVFYKE SYTT IKPVSYKLDGV YTEI+PKLD YYKK NAYYTEQP Sbjct 1835 YLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQP 1894 Query 1065 IDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAID 1124 IDLVPTQP+PNASFDNFKLTCSNTKFADDLNQMTGFKKPASREL+VTFFPDLNGDVVAID Sbjct 1895 IDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAID 1954 Query 1125 YRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVE 1184 YRHYS SFKKGAKL+HKPI+WHINQTTNKTTYKPN WCLRCLWSTKPV+TSNSFEVL VE Sbjct 1955 YRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVE 2014 Query 1185 DTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELG 1244 DTQGMDNLACESQT TSEEVVENPT+QKE+IECDVKT EVVGNVILKPSEEGVKVTQELG Sbjct 2015 DTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELG 2074 Query 1245 HEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAV 1304 HEDLMAAYVEETSITIKKPNELSLALGL+TLATHGAAAINSVPWSKILAYVKPFLGQ AV Sbjct 2075 HEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAV 2134 Query 1305 ITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCL 1364 T+NCIK+CVQRVF+NYMPYVITLLFQLCTFT+STNSRI+ASLPTTIAKNSVKSVAKLCL Sbjct 2135 TTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCL 2194 Query 1365 DVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYI 1424 DVCINYVKSPKFSKLFTI MWLLLLSICLGSL YVTA GV LS+LG+PSYCDGVRE Y+ Sbjct 2195 DVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYV 2254 Query 1425 NSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAY 1484 NSSNVTTMDFC+G F CSVCL+GLDSLDSYPALETIQVTISSYKLDLT LGLAAEW LAY Sbjct 2255 NSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAY 2314 Query 1485 MLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFY 1544 MLFTKFFYLLGLSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFA Y Sbjct 2315 MLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCY 2374 Query 1545 YVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWN 1604 YVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCKAHNWN Sbjct 2375 YVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWN 2434 Query 1605 CLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQK 1664 CLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+YVVDSV VKNGALHLYFDKAGQK Sbjct 2435 CLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQK 2494 Query 1665 TYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 1724 TYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ESAAKSASVYYSQLMCQPILL Sbjct 2495 TYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILL 2554 Query 1725 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 1784 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS Sbjct 2555 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 2614 Query 1785 TFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGAC 1844 TFVSAARQGVVDTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGAC Sbjct 2615 TFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGAC 2674 Query 1845 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1904 IDCNARHINAQVAKSHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV Sbjct 2675 IDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 2734 Query 1905 NVITTKISLKGG 1916 N ITTKISLKGG Sbjct 2735 NAITTKISLKGG 2746 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 819 to 2746 Score:3539 bits(9178), Expect:0.0, Method:Compositional matrix adjust., Identities:1758/1932(91%), Positives:1837/1932(95%), Gaps:20/1932(1%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 APVKGVTFGEDTVLEVQGYKNVKITFELD RVDKVLNEKCSVYTVESGTEVTEFACVVAE Sbjct 819 APVKGVTFGEDTVLEVQGYKNVKITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAE 878 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AVVKTLQPVSDLLT MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE E Sbjct 879 AVVKTLQPVSDLLTNMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEYE 938 Query 121 DEEETCE----HEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLP 176 DEEE E HEYGTEDDYKGLPLEFGASTE V+EEEEE+ L++AI A+PEPEPLP Sbjct 939 DEEEIPEETCEHEYGTEDDYKGLPLEFGASTEIQQVDEEEEEDW-LEEAIAAKPEPEPLP 997 Query 177 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 236 EEPVNQF GYLKLTDNVAIKC+DIVKEAQ AKPTVIVNAAN HLKHGGGVAGALNKATNG Sbjct 998 EEPVNQFTGYLKLTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNG 1057 Query 237 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQ 296 AMQ ESD+YI++NGPLTVGGSCLLSGHNLA+KC+HVVGPNLNAGEDVQLLK AY NFNSQ Sbjct 1058 AMQQESDDYIKKNGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQ 1117 Query 297 DVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESP 356 DVLLAPLLSAGIFGAKPLQSLKMCVE VRTQVY AVND+ LYD +VL YLDSLKPKVE+P Sbjct 1118 DVLLAPLLSAGIFGAKPLQSLKMCVETVRTQVYFAVNDQDLYDHVVLGYLDSLKPKVETP 1177 Query 357 NKEEEPKLEEPKAVQ------------PVAEKPVDVKPKIKACIDEVTTTLEETKFLTNK 404 +E +L+E AV+ PV EKPVDVK KA I+EV T+LEETKFLT++ Sbjct 1178 T-QENLELKEQPAVETLTQENLELEELPVIEKPVDVK--FKARIEEVNTSLEETKFLTSR 1234 Query 405 LLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITSGDITCVIIPAKKSGGTTEM 464 LLLFADINGKLYQDSQNMLRGEDM FLEKDAPYIVGDVI+SGDITCVIIPAKK+GGTTEM Sbjct 1235 LLLFADINGKLYQDSQNMLRGEDMFFLEKDAPYIVGDVISSGDITCVIIPAKKAGGTTEM 1294 Query 465 LARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSETPNEKEEVLGTVS 524 LA+ALK+VPV+EYITTYPGQGCAGYTLEEAKTAL+KCKS FYVLPS+TPN+KEE+LGTVS Sbjct 1295 LAKALKKVPVSEYITTYPGQGCAGYTLEEAKTALRKCKSVFYVLPSKTPNDKEEILGTVS 1354 Query 525 WNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVA 584 WNLREMLAHAEETRKLM IC+DV+A+M+TI R+YKGIKVQEGIVDYGVRFFFYTSKEPVA Sbjct 1355 WNLREMLAHAEETRKLMLICMDVKALMSTIHRRYKGIKVQEGIVDYGVRFFFYTSKEPVA 1414 Query 585 SIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTS 644 SIITKLN LNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVT YNGYLTS Sbjct 1415 SIITKLNLLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTS 1474 Query 645 SSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDGEVL 704 SSKT EE+F+ET SLAG YRDWSYSGQRTELGVEFLKRGDK+VYHT GSPI+FHLDGEVL Sbjct 1475 SSKTSEEHFIETVSLAGMYRDWSYSGQRTELGVEFLKRGDKVVYHTVGSPIQFHLDGEVL 1534 Query 705 PLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHV 764 LDKLKSLLSLREV+TIKVFTTVDNTNLHT IVDMSMTYGQQFGPTYLDGADVTKIKPH Sbjct 1535 LLDKLKSLLSLREVRTIKVFTTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHA 1594 Query 765 NHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWAD 824 HEGKTFFVLPSDDTLRSEAFEYYHT+DESFLGRYMSALNHTKKWKFPQ+GGLTSIKWAD Sbjct 1595 KHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWAD 1654 Query 825 NNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRET 884 NNCYLSSVLLALQQ+EVKFNAPALQEAYYRARAGDAANFCALILAYSN+TVGELGDVRET Sbjct 1655 NNCYLSSVLLALQQIEVKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRET 1714 Query 885 MTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGR 944 MTHLLQHANLESAKRVLNVVCK CGQK+TTL GVEAVMYMGTLSY+ELKTGV+IPC+CGR Sbjct 1715 MTHLLQHANLESAKRVLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGR 1774 Query 945 NATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGA 1004 +ATQYLVQQESSFVMMSAPP+EY LQQGAFLCANEYTG+YQCGHYTH+T KETLYR+DGA Sbjct 1775 DATQYLVQQESSFVMMSAPPSEYTLQQGAFLCANEYTGSYQCGHYTHVTVKETLYRIDGA 1834 Query 1005 HLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP 1064 +LTKMSEYKGPVTDVFYKE SYTT IKPVSYKLDGV YTEI+PKLD YYKK NAYYTEQP Sbjct 1835 YLTKMSEYKGPVTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQP 1894 Query 1065 IDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAID 1124 IDLVPTQP+PNASFDNFKLTCSNTKFADDLNQMTGFKKPASREL+VTFFPDLNGDVVAID Sbjct 1895 IDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFKKPASRELSVTFFPDLNGDVVAID 1954 Query 1125 YRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVE 1184 YRHYS SFKKGAKL+HKPI+WHINQTTNKTTYKPN WCLRCLWSTKPV+TSNSFEVL VE Sbjct 1955 YRHYSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVE 2014 Query 1185 DTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELG 1244 DTQGMDNLACESQT TSEEVVENPT+QKE+IECDVKT EVVGNVILKPSEEGVKVTQELG Sbjct 2015 DTQGMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIEVVGNVILKPSEEGVKVTQELG 2074 Query 1245 HEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAV 1304 HEDLMAAYVEETSITIKKPNELSLALGL+TLATHGAAAINSVPWSKILAYVKPFLGQ AV Sbjct 2075 HEDLMAAYVEETSITIKKPNELSLALGLRTLATHGAAAINSVPWSKILAYVKPFLGQAAV 2134 Query 1305 ITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCL 1364 T+NCIK+CVQRVF+NYMPYVITLLFQLCTFT+STNSRI+ASLPTTIAKNSVKSVAKLCL Sbjct 2135 TTTNCIKRCVQRVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTTIAKNSVKSVAKLCL 2194 Query 1365 DVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYI 1424 DVCINYVKSPKFSKLFTI MWLLLLSICLGSL YVTA GV LS+LG+PSYCDGVRE Y+ Sbjct 2195 DVCINYVKSPKFSKLFTIAMWLLLLSICLGSLIYVTAAFGVLLSNLGIPSYCDGVRESYV 2254 Query 1425 NSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAY 1484 NSSNVTTMDFC+G F CSVCL+GLDSLDSYPALETIQVTISSYKLDLT LGLAAEW LAY Sbjct 2255 NSSNVTTMDFCEGSFLCSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAY 2314 Query 1485 MLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFY 1544 MLFTKFFYLLGLSAIMQ FFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFA Y Sbjct 2315 MLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFAFCY 2374 Query 1545 YVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWN 1604 YVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNG+KRSFYVYANGGRGFCKAHNWN Sbjct 2375 YVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWN 2434 Query 1605 CLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQK 1664 CLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+YVVDSV VKNGALHLYFDKAGQK Sbjct 2435 CLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQK 2494 Query 1665 TYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 1724 TYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKC+ESAAKSASVYYSQLMCQPILL Sbjct 2495 TYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILL 2554 Query 1725 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 1784 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS Sbjct 2555 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 2614 Query 1785 TFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGAC 1844 TFVSAARQGVVDTDVDTKDVIECLKLSHHSD+EVTGDSCNNFMLTYNKVENMTPRDLGAC Sbjct 2615 TFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGAC 2674 Query 1845 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1904 IDCNARHINAQVAKSHNVSL+WNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV Sbjct 2675 IDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 2734 Query 1905 NVITTKISLKGG 1916 N ITTKISLKGG Sbjct 2735 NAITTKISLKGG 2746 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTC1.1 Length: 4405 Range 1: 819 to 2763 Score:3060 bits(7933), Expect:0.0, Method:Compositional matrix adjust., Identities:1468/1951(75%), Positives:1679/1951(86%), Gaps:41/1951(2%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP K VTFG+DTV+EVQGYK+V ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 877 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AV+KTLQPVS+LLTP+GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ +CE Sbjct 878 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 937 Query 121 DEEE--TCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDD-------------- 164 +EE + ++EYGTEDDY+G PLEFGA++ EEE+EEDWLDD Sbjct 938 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSED 996 Query 165 --------AIEAEPEPE----PLPEE-PVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTV 211 +E +P+ E P+ + VN F GYLKLTDNV IK DIV+EA+ KPTV Sbjct 997 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 1056 Query 212 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 271 +VNAAN +LKHGGGVAGALNKATN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLH Sbjct 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 Query 272 VVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLA 331 VVGPN+N GED+QLLK AYENFN +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLA Sbjct 1117 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 1176 Query 332 VNDKSLYDQIVLDYLDSLKPK------VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIK 385 V DK+LYD++V +L+ K E P +E +P + E K P E+ KIK Sbjct 1177 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESK---PSVEQRKQDDKKIK 1233 Query 386 ACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITS 445 AC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPYIVGDV+ Sbjct 1234 ACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQE 1293 Query 446 GDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAF 505 G +T V+IP KK+GGTTEMLA+AL++VP YITTYPGQG GYT+EEAKT LKKCKSAF Sbjct 1294 GVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAF 1353 Query 506 YVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQE 565 Y+LPS NEK+E+LGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QE Sbjct 1354 YILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQE 1413 Query 566 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPA 625 G+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA Sbjct 1414 GVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPA 1473 Query 626 VVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDK 685 VSVSSPDAVTAYNGYLTSSSKTPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK Sbjct 1474 TVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDK 1533 Query 686 IVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQ 745 VY+T+ +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQ Sbjct 1534 SVYYTS-NPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQ 1592 Query 746 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNH 805 QFGPTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNH Sbjct 1593 QFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNH 1652 Query 806 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCA 865 TKKWK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCA Sbjct 1653 TKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCA 1712 Query 866 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMG 925 LILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMG Sbjct 1713 LILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMG 1772 Query 926 TLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQ 985 TLSY++ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQ Sbjct 1773 TLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQ 1832 Query 986 CGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEI 1045 CGHY HIT+KETLY +DGA LTK SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI Sbjct 1833 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1892 Query 1046 EPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS 1105 +PKLD YYKK N+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPAS Sbjct 1893 DPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPAS 1952 Query 1106 RELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRC 1165 REL VTFFPDLNGDVVAIDY+HY+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RC Sbjct 1953 RELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRC 2012 Query 1166 LWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVV 1225 LWSTKPV+TSNSF+VL ED QGMDNLACE SEEVVENPT+QK+++EC+VKTTEVV Sbjct 2013 LWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVV 2072 Query 1226 GNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS 1285 G++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NS Sbjct 2073 GDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNS 2132 Query 1286 VPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKA 1345 VPW I Y KPFL + T+N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKA Sbjct 2133 VPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKA 2192 Query 1346 SLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGV 1405 S+PTTIAKN+VKSV K CL+ NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV Sbjct 2193 SMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGV 2252 Query 1406 CLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTIS 1465 +S+LG+PSYC G RE Y+NS+NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TIS Sbjct 2253 LMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS 2312 Query 1466 SYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIV 1525 S+K DLT GL AEW LAY+LFT+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++V Sbjct 2313 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLV 2372 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 QMAP+SAMVRMYIFFASFYYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+R Sbjct 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 SFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VD Sbjct 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 SVTVKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES Sbjct 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK L Sbjct 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 1825 VATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN Sbjct 2613 VATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 2672 Query 1826 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 1885 +MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSA Sbjct 2673 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 2732 Query 1886 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 AKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2733 AKKNNLPFKLTCATTRQVVNVVTTKIALKGG 2763 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 819 to 2763 Score:3052 bits(7912), Expect:0.0, Method:Compositional matrix adjust., Identities:1468/1951(75%), Positives:1679/1951(86%), Gaps:41/1951(2%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAE 60 AP K VTFG+DTV+EVQGYK+V ITFELD R+DKVLNEKCS YTVE GTEV EFACVVA+ Sbjct 819 APTK-VTFGDDTVIEVQGYKSVNITFELDERIDKVLNEKCSAYTVELGTEVNEFACVVAD 877 Query 61 AVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECE 120 AV+KTLQPVS+LLTP+GIDLDEWS+AT+YLFD++GE KL+S MYCSFYPPDE+E+ +CE Sbjct 878 AVIKTLQPVSELLTPLGIDLDEWSMATYYLFDESGEFKLASHMYCSFYPPDEDEEEGDCE 937 Query 121 DEEE--TCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDD-------------- 164 +EE + ++EYGTEDDY+G PLEFGA++ EEE+EEDWLDD Sbjct 938 EEEFEPSTQYEYGTEDDYQGKPLEFGATSAALQ-PEEEQEEDWLDDDSQQTVGQQDGSED 996 Query 165 --------AIEAEPEPE----PLPEE-PVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTV 211 +E +P+ E P+ + VN F GYLKLTDNV IK DIV+EA+ KPTV Sbjct 997 NQTTTIQTIVEVQPQLEMELTPVVQTIEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTV 1056 Query 212 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 271 +VNAAN +LKHGGGVAGALNKATN AMQ ESD+YI NGPL VGGSC+LSGHNLA+ CLH Sbjct 1057 VVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCVLSGHNLAKHCLH 1116 Query 272 VVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLA 331 VVGPN+N GED+QLLK AYENFN +VLLAPLLSAGIFGA P+ SL++CV+ VRT VYLA Sbjct 1117 VVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLA 1176 Query 332 VNDKSLYDQIVLDYLDSLKPK------VESPNKEEEPKLEEPKAVQPVAEKPVDVKPKIK 385 V DK+LYD++V +L+ K E P +E +P + E K P E+ KIK Sbjct 1177 VFDKNLYDKLVSSFLEMKSEKQVEQKIAEIPKEEVKPFITESK---PSVEQRKQDDKKIK 1233 Query 386 ACIDEVTTTLEETKFLTNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPYIVGDVITS 445 AC++EVTTTLEETKFLT LLL+ DING L+ DS ++ D++FL+KDAPYIVGDV+ Sbjct 1234 ACVEEVTTTLEETKFLTENLLLYIDINGNLHPDSATLVSDIDITFLKKDAPYIVGDVVQE 1293 Query 446 GDITCVIIPAKKSGGTTEMLARALKEVPVAEYITTYPGQGCAGYTLEEAKTALKKCKSAF 505 G +T V+IP KK+GGTTEMLA+AL++VP YITTYPGQG GYT+EEAKT LKKCKSAF Sbjct 1294 GVLTAVVIPTKKAGGTTEMLAKALRKVPTDNYITTYPGQGLNGYTVEEAKTVLKKCKSAF 1353 Query 506 YVLPSETPNEKEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQE 565 Y+LPS NEK+E+LGTVSWNLREMLAHAEETRKLMP+C++ +AI++TIQRKYKGIK+QE Sbjct 1354 YILPSIISNEKQEILGTVSWNLREMLAHAEETRKLMPVCVETKAIVSTIQRKYKGIKIQE 1413 Query 566 GIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPA 625 G+VDYG RF+FYTSK VAS+I LN LNE LVTMP+GYVTHGLNLEEAAR MRSLK PA Sbjct 1414 GVVDYGARFYFYTSKTTVASLINTLNDLNETLVTMPLGYVTHGLNLEEAARYMRSLKVPA 1473 Query 626 VVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRGDK 685 VSVSSPDAVTAYNGYLTSSSKTPEE+F+ET SLAGSY+DWSYSGQ T+LG+EFLKRGDK Sbjct 1474 TVSVSSPDAVTAYNGYLTSSSKTPEEHFIETISLAGSYKDWSYSGQSTQLGIEFLKRGDK 1533 Query 686 IVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSMTYGQ 745 VY+T+ +P FHLDGEV+ D LK+LLSLREV+TIKVFTTVDN NLHT +VDMSMTYGQ Sbjct 1534 SVYYTS-NPTTFHLDGEVITFDNLKTLLSLREVRTIKVFTTVDNINLHTQVVDMSMTYGQ 1592 Query 746 QFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMSALNH 805 QFGPTYLDGADVTKIKPH +HEGKTF+VLP+DDTLR EAFEYYHT D SFLGRYMSALNH Sbjct 1593 QFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNH 1652 Query 806 TKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAANFCA 865 TKKWK+PQV GLTSIKWADNNCYL++ LL LQQ+E+KFN PALQ+AYYRARAG+AANFCA Sbjct 1653 TKKWKYPQVNGLTSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCA 1712 Query 866 LILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAVMYMG 925 LILAY NKTVGELGDVRETM++L QHANL+S KRVLNVVCK CGQ+ TTLKGVEAVMYMG Sbjct 1713 LILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGVEAVMYMG 1772 Query 926 TLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTGNYQ 985 TLSY++ K GV IPC CG+ AT+YLVQQES FVMMSAPPA+Y+L+ G F CA+EYTGNYQ Sbjct 1773 TLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQ 1832 Query 986 CGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEI 1045 CGHY HIT+KETLY +DGA LTK SEYKGP+TDVFYKE SYTT IKPV+YKLDGV TEI Sbjct 1833 CGHYKHITSKETLYCIDGALLTKSSEYKGPITDVFYKENSYTTTIKPVTYKLDGVVCTEI 1892 Query 1046 EPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLTCSNTKFADDLNQMTGFKKPAS 1105 +PKLD YYKK N+Y+TEQPIDLVP QP PNASFDNFK C N KFADDLNQ+TG+KKPAS Sbjct 1893 DPKLDNYYKKDNSYFTEQPIDLVPNQPYPNASFDNFKFVCDNIKFADDLNQLTGYKKPAS 1952 Query 1106 RELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRC 1165 REL VTFFPDLNGDVVAIDY+HY+ SFKKGAKL+HKPI+WH+N TNK TYKPN WC+RC Sbjct 1953 RELKVTFFPDLNGDVVAIDYKHYTPSFKKGAKLLHKPIVWHVNNATNKATYKPNTWCIRC 2012 Query 1166 LWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTEVV 1225 LWSTKPV+TSNSF+VL ED QGMDNLACE SEEVVENPT+QK+++EC+VKTTEVV Sbjct 2013 LWSTKPVETSNSFDVLKSEDAQGMDNLACEDLKPVSEEVVENPTIQKDVLECNVKTTEVV 2072 Query 1226 GNVILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS 1285 G++ILKP+ +K+T+E+GH DLMAAYV+ +S+TIKKPNELS LGLKTLATHG AA+NS Sbjct 2073 GDIILKPANNSLKITEEVGHTDLMAAYVDNSSLTIKKPNELSRVLGLKTLATHGLAAVNS 2132 Query 1286 VPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKA 1345 VPW I Y KPFL + T+N + +C+ RV +NYMPY TLL QLCTFT+STNSRIKA Sbjct 2133 VPWDTIANYAKPFLNKVVSTTTNIVTRCLNRVCTNYMPYFFTLLLQLCTFTRSTNSRIKA 2192 Query 1346 SLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGV 1405 S+PTTIAKN+VKSV K CL+ NY+KSP FSKL I++W LLLS+CLGSL Y TA LGV Sbjct 2193 SMPTTIAKNTVKSVGKFCLEASFNYLKSPNFSKLINIIIWFLLLSVCLGSLIYSTAALGV 2252 Query 1406 CLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTIS 1465 +S+LG+PSYC G RE Y+NS+NVT +C G PCSVCLSGLDSLD+YP+LETIQ+TIS Sbjct 2253 LMSNLGMPSYCTGYREGYLNSTNVTIATYCTGSIPCSVCLSGLDSLDTYPSLETIQITIS 2312 Query 1466 SYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIV 1525 S+K DLT GL AEW LAY+LFT+FFY+LGL+AIMQ FF YFA HFISNSWLMW II++V Sbjct 2313 SFKWDLTAFGLVAEWFLAYILFTRFFYVLGLAAIMQLFFSYFAVHFISNSWLMWLIINLV 2372 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 QMAP+SAMVRMYIFFASFYYVWKSYVH++DGC SSTCMMCYKRNRATRVECTTIVNGV+R Sbjct 2373 QMAPISAMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRR 2432 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 SFYVYANGG+GFCK HNWNC+NCDTFCAGSTFISDEVARDLSLQFKRPINPTDQS+Y+VD Sbjct 2433 SFYVYANGGKGFCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVD 2492 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 SVTVKNG++HLYFDKAGQKTYERH LSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES Sbjct 2493 SVTVKNGSIHLYFDKAGQKTYERHSLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 2552 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +AKSASVYYSQLMCQPILLLDQALVSDVGDS EV+VKMFDAYV+TFS+TF+VPMEKLK L Sbjct 2553 SAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKTL 2612 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNN 1825 VATA +ELAK V+LD VLSTF+SAARQG VD+DV+TKDV+ECLKLSH SDIEVTGDSCNN Sbjct 2613 VATAEAELAKNVSLDNVLSTFISAARQGFVDSDVETKDVVECLKLSHQSDIEVTGDSCNN 2672 Query 1826 FMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 1885 +MLTYNKVENMTPRDLGACIDC+ARHINAQVAKSHN++L+WNVKD+MSLSEQLRKQIRSA Sbjct 2673 YMLTYNKVENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSA 2732 Query 1886 AKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 AKKNN+PF+LTCATTRQVVNV+TTKI+LKGG Sbjct 2733 AKKNNLPFKLTCATTRQVVNVVTTKIALKGG 2763 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 1379 to 2831 Score:711 bits(1836), Expect:0.0, Method:Compositional matrix adjust., Identities:477/1463(33%), Positives:749/1463(51%), Gaps:99/1463(6%) Query 543 ICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 602 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 603 GYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGS 662 GYVTHGL+L +A + ++ + P V ++S D V N + + +TPE+ F+ T G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 663 YRDWSY-SGQRTELGVEF---LKRGDKIVYHTTGSPIEFHL-DGEV-LPLDKL---KSLL 713 Y W +G+ GV + L D+ + + +F++ G++ LP D L ++ L Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADN---KFYVVKGQIALPFDSLEKCRTYL 1551 Query 714 SLR--EVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTF 771 + R + K + V T+D N T +++ + TY Q G + G+D++ P G+ Sbjct 1552 TSRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAV 1611 Query 772 FVLPSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCY 828 ++ +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY Sbjct 1612 YL--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCY 1669 Query 829 LSSVLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTH 887 ++ +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + Sbjct 1670 VNVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHT 1729 Query 888 LLQHANLES-AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNA 946 +L A L + AK V C CG + TT G++A +Y+G S DEL C CG Sbjct 1730 ILSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVR 1789 Query 947 TQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG-------NYQCGHYTHITAKETL- 998 + LV+ + ++++S + + +YT GHY H+ K+ L Sbjct 1790 KRQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLL 1849 Query 999 YRVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNA 1058 Y+ D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y K Sbjct 1850 YKYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGK 1909 Query 1059 YYTEQP-IDLVPTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTV 1110 Y+T++P I+ P + + + N L T + + N + GF KP S++LT Sbjct 1910 YFTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTY 1969 Query 1111 TFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTK 1170 +FFPD GDV+ +Y Y +K GA L KPILW N + K N LR ++ Sbjct 1970 SFFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIA 2029 Query 1171 PVDTSNSFEVLVVEDTQGMDNLAC--ESQTTTSEEVVENPTVQKEIIECD-VKTTEVVGN 1227 PV N + VL Q ++ A +++ + +V E+ + II+C +K V Sbjct 2030 PVTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDG 2089 Query 1228 VILKPSEEGVKVTQELGHEDLMAAYVEET-SITIKKPNELSLALGLKTLATHG----AAA 1282 +GV V LG +DL A YV+ + + K N S + T+ AA+ Sbjct 2090 YSFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAAS 2149 Query 1283 INSVPWSKILAYVKPFLGQTAVITSN---CIKKCVQRVFSNYM----------PYVITLL 1329 + KIL Q A +T N + K + R+ N + + LL Sbjct 2150 GSITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLL 2209 Query 1330 FQLCTFTKSTN-SRIKASLPT-----TIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIV 1383 TF KS N S +K + + N VK A DV + K + ++ Sbjct 2210 ILPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLL 2269 Query 1384 MWL-------------------LLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYI 1424 + L + L + A S LG+ S CDG+ E Y Sbjct 2270 FLICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYR 2329 Query 1425 NSSNVTTMDFCQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLA 1483 N S DFC C+ CL G DSL Y A + IQ ++SY +++ ++ E+ LA Sbjct 2330 NVS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALA 2388 Query 1484 YMLFTKFFYLLGLSAIMQAFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFA 1541 Y+L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2389 YVLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLA 2448 Query 1542 SFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAH 1601 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC H Sbjct 2449 CLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRH 2508 Query 1602 NWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKA 1661 NWNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + Sbjct 2509 NWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSRE 2568 Query 1662 GQKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQL 1717 G YER+PL +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ+ Sbjct 2569 GASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQV 2628 Query 1718 MCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGV 1777 + +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2629 LSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGD 2688 Query 1778 ALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENM 1836 V+ TF AAR V++DV+T +++ L+ ++ D+++T + NN++ +Y K +++ Sbjct 2689 DFQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSV 2748 Query 1837 TPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLT 1896 DLG ID NA +N ++ N + +WN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2749 ATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLT 2808 Query 1897 CATTRQVVNVITTKIS---LKGG 1916 + R N+++ K S L GG Sbjct 2809 TSRLRSADNILSVKFSATKLSGG 2831 Range 2: 1170 to 1347 Score:157 bits(398), Expect:2e-38, Method:Compositional matrix adjust., Identities:75/179(42%), Positives:118/179(65%), Gaps:1/179(0%) Query 163 DDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKH 222 D + + + +P E P+ F ++ L ++V + D + A++ + ++VNAANTHLKH Sbjct 1170 DSSAKPQRVKKPKAENPLKNF-KHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKH 1228 Query 223 GGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGED 282 GGG+A A+++A+ G +Q ESD+Y+ GPL VG S LL GH LA LHVVGP+ A +D Sbjct 1229 GGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQD 1288 Query 283 VQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 +QLLKR Y+ FN ++++PL+SAGIF +P SL+ + +V T+ Y+ VN + +Y+ + Sbjct 1289 IQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 1347 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 1379 to 2831 Score:709 bits(1831), Expect:0.0, Method:Compositional matrix adjust., Identities:476/1462(33%), Positives:747/1462(51%), Gaps:97/1462(6%) Query 543 ICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPI 602 IC D A ++ + + + VD GV+++ Y+SK+P+ IIT N+ + + MPI Sbjct 1379 ICTDQSANAKLLKGRGVDLTKKTQTVD-GVKYYLYSSKDPLTDIITAANAC-KGICAMPI 1436 Query 603 GYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGS 662 GYVTHGL+L +A + ++ + P V ++S D V N + + +TPE+ F+ T G Sbjct 1437 GYVTHGLDLAQAGQQVKKITVPYVCLLASKDQVPILNSDV--AVQTPEQSFINTVIANGG 1494 Query 663 YRDWSY-SGQRTELGVEF---LKRGDKIVYHTTGSPIEFHLDGEV-LPLDKL---KSLLS 714 Y W +G+ GV + L D+ + + + + G++ LP D L ++ L+ Sbjct 1495 YHCWHLVTGELIVKGVSYRKLLNWSDQTICYADNK--FYVVKGQIALPFDSLEKCRTYLT 1552 Query 715 LR--EVKTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF 772 R + K + V T+D N T +++ + TY Q G + G+D++ P G+ + Sbjct 1553 SRAAQQKNVDVLVTIDGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVY 1612 Query 773 VLPSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYL 829 + +D+ +E E Y T D +FL RY S L KKWK+ G+ S+K NNCY+ Sbjct 1613 L--ADNLSEAEKAVLSEVYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYV 1670 Query 830 SSVLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHL 888 + +L L + E+KF PALQ AY + + GD+ F ALI+AY + T GE D + + Sbjct 1671 NVTMLMLDMLKEIKFIVPALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTI 1730 Query 889 LQHANLES-AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNAT 947 L A L + AK V C CG + TT G++A +Y+G S DEL C CG Sbjct 1731 LSKAELTTQAKMVWRQWCNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRK 1790 Query 948 QYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYTG-------NYQCGHYTHITAKETL-Y 999 + LV+ + ++++S + + +YT GHY H+ K+ L Y Sbjct 1791 RQLVEHNAPWLLLSGLNEAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLY 1850 Query 1000 RVDGAHLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAY 1059 + D L+K S+ K +TDV+Y + Y+ V Y LDG T+ +++P L +Y K Y Sbjct 1851 KYDSGSLSKTSDMKCKMTDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKY 1910 Query 1060 YTEQP-IDLVPTQPMPNASFDNFKL-----TCSNTKFADDLNQMTGF--KKPASRELTVT 1111 +T++P I+ P + + + N L T + + N + GF KP S++LT + Sbjct 1911 FTKKPVIEYSPATILSGSVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYS 1970 Query 1112 FFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKP 1171 FFPD GDV+ +Y Y +K GA L KPILW N + K N LR ++ P Sbjct 1971 FFPDFEGDVILTEYSTYDPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAP 2030 Query 1172 VDTSNSFEVLVVEDTQGMDNLAC--ESQTTTSEEVVENPTVQKEIIECD-VKTTEVVGNV 1228 V N + VL Q ++ A +++ + +V E+ + II+C +K V Sbjct 2031 VTLENKYTVLQDNQIQQVEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGY 2090 Query 1229 ILKPSEEGVKVTQELGHEDLMAAYVEET-SITIKKPNELSLALGLKTLATHG----AAAI 1283 +GV V LG +DL A YV+ + + K N S + T+ AA+ Sbjct 2091 SFVNDPQGVNVIDTLGIDDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASG 2150 Query 1284 NSVPWSKILAYVKPFLGQTAVITSN---CIKKCVQRVFSNYM----------PYVITLLF 1330 + KIL Q A +T N + K + R+ N + + LL Sbjct 2151 SITRRVKILLGASSLFAQFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLI 2210 Query 1331 QLCTFTKSTN-SRIKASLPT-----TIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVM 1384 TF KS N S +K + + N VK A DV + K + ++ Sbjct 2211 LPFTFWKSKNQSTVKVEVGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLF 2270 Query 1385 WL-------------------LLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYIN 1425 + L + L + A S LG+ S CDG+ E Y N Sbjct 2271 LICTTGLLLSSLYYLFLFHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRN 2330 Query 1426 SSNVTTMDFCQGYFP-CSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAY 1484 S DFC C+ CL G DSL Y A + IQ ++SY +++ ++ E+ LAY Sbjct 2331 VS-YDVNDFCSNRSALCNWCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAY 2389 Query 1485 MLFTKFFYLLGLSAIMQAFFGYFAS--HFISNSWLMWFIISIVQMAPVSAMVRMYIFFAS 1542 +L+T F +L L Q FF Y + ++ S ++L+ V P+ +VR+Y F A Sbjct 2390 VLYTSTFNVLLLVVSSQYFFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLAC 2449 Query 1543 FYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHN 1602 +++ + Y H+++GC + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC HN Sbjct 2450 LWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHN 2509 Query 1603 WNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAG 1662 WNC++CDT G+TFI +EVA DL+ +R + PTD+S Y V+SVTVK+ + L++ + G Sbjct 2510 WNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREG 2569 Query 1663 QKTYERHPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLM 1718 YER+PL +F NLD L+ T +P N +++D + +E+ A+SA VYYSQ++ Sbjct 2570 ASCYERYPLCYFTNLDKLKFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVL 2629 Query 1719 CQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVA 1778 +P+LL+D +V+ VGDS E++ KM D+YV++F + F V +KL LVATA + +G Sbjct 2630 SKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDD 2689 Query 1779 LDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMT 1837 V+ TF AAR V++DV+T +++ L+ ++ D+++T + NN++ +Y K +++ Sbjct 2690 FQTVIKTFTDAARGPAGVESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVA 2749 Query 1838 PRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTC 1897 DLG ID NA +N ++ N + +WN DYM LS+ L++QIR A +K NIPFRLT Sbjct 2750 TADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTT 2809 Query 1898 ATTRQVVNVITTKIS---LKGG 1916 + R N+++ K S L GG Sbjct 2810 SRLRSADNILSVKFSATKLSGG 2831 Range 2: 1170 to 1347 Score:157 bits(397), Expect:3e-38, Method:Compositional matrix adjust., Identities:75/179(42%), Positives:118/179(65%), Gaps:1/179(0%) Query 163 DDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKH 222 D + + + +P E P+ F ++ L ++V + D + A++ + ++VNAANTHLKH Sbjct 1170 DSSAKPQRVKKPKAENPLKNF-KHIVLNNDVTLVFGDAIAVARATEDCILVNAANTHLKH 1228 Query 223 GGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGED 282 GGG+A A+++A+ G +Q ESD+Y+ GPL VG S LL GH LA LHVVGP+ A +D Sbjct 1229 GGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLKGHGLATGILHVVGPDARANQD 1288 Query 283 VQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 +QLLKR Y+ FN ++++PL+SAGIF +P SL+ + +V T+ Y+ VN + +Y+ + Sbjct 1289 IQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLLSVVHTKTYVVVNSEKVYNDL 1347 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 1156 to 2733 Score:684 bits(1766), Expect:0.0, Method:Compositional matrix adjust., Identities:496/1620(31%), Positives:797/1620(49%), Gaps:160/1620(9%) Query 411 INGKLYQDSQNMLRGEDMSFLEKDAPYIVGD-VITSG-----DITCVIIPAKKSGGTTEM 464 I G + S+ ++ E ++ P VGD V+ G +I V+ P ++ + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 465 LARALKEVPVAEYITT-YPGQGCAG--------YTLEEAKTALKKCKSAFYVLPSETPNE 515 L++ K + + T G G Y + EAKT + ++ V S T + Sbjct 1216 LSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVD 1275 Query 516 KEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFF 575 + L LR + A++ + +C D A ++ K + VD GV+++ Sbjct 1276 IPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQYY 1334 Query 576 FYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAV 635 YTSK+ + I+ + N + +++MP+GYV+HGL+L +A +R + P V +++ + Sbjct 1335 CYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKEQ- 1392 Query 636 TAYNGYLTSSSK--TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRG---------- 683 L S P E F++ G Y W EL V+ L+ Sbjct 1393 ---EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLV--EGELLVQDLRLNKLLHWSDQTI 1447 Query 684 ---DKIVY---HTTGSPIEFHLDGEVLPLDKLKSLLSLREVK--TIKVFTTVDNTNLHTH 735 D + Y ++T P E L ++ L R + TI+V TVD N T Sbjct 1448 CYKDSVFYVVKNSTAFPFE--------TLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTV 1499 Query 736 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV---LPSDDTLRSEAFEYYHTID 792 +++ TY Q G + +GAD++ P G + ++ L +D+T + E Y +D Sbjct 1500 VLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALK--ELYGPVD 1557 Query 793 ESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQV-EVKFNAPALQEA 851 +FL R+ S KWK + S+K +DNNCYL++V++ L + ++KF PALQ A Sbjct 1558 PTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHA 1617 Query 852 YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SAKRVLNVVCKHCGQ 910 + + + GD+ +F ALI+AY N T G D + +L A L SA+ V C CG Sbjct 1618 FMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGI 1677 Query 911 KTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQ 970 K L+G++A Y+G + ++L+ ++ C CG + +V+ + ++++S P E + Sbjct 1678 KDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVT 1737 Query 971 QGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSEYKGPVTDVFYKETS 1025 F+ N + G GHY H K L + D ++K S++K VTDV + Sbjct 1738 TSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQK 1797 Query 1026 YTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYT-EQPIDLVPTQPMPNASFDNFKLT 1084 Y++ V Y LDG TE++P L +Y K Y+T E P+ P + + + N L Sbjct 1798 YSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLV 1857 Query 1085 CSNTKFADD-----LNQMTGF--KKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAK 1137 S+ + D N + GF KP +++ T +F P +GDV+ ++ Y +K GA Sbjct 1858 SSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAM 1917 Query 1138 LVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQ 1197 KPILW + + K N LR ++ P++ N F L VE T Sbjct 1918 YKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTP---------- 1967 Query 1198 TTTSEEVVENPTV-----QKE--IIECD-VKTTEVVGNVILKPSEEGVKVTQELGHEDLM 1249 VE PTV Q+E I++C + V NV + G V + L EDL Sbjct 1968 -------VEPPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLH 2020 Query 1250 AAYVE-ETSITIKKPNELSLALGLKTLAT---HGAAAINSVPWSKILAYVKPFLGQ---- 1301 YV+ + + + K N LS L L T+ + + AA S+ L + F + Sbjct 2021 TLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFAT 2080 Query 1302 ----TAVITSNCIKKCVQR------VFSNYMPYV-ITLLFQLCTFTKST--NSRIKASLP 1348 +CIK V+ + + +V + + L F+ S + +K S Sbjct 2081 RTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSAL 2140 Query 1349 TT---IAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGV 1405 T + N VK +D+ ++ ++ + +++ L + L S+ Y V Sbjct 2141 KTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSV-YHLYVFNQ 2199 Query 1406 CLSS--------------------LGVPSYCDGVRELY-INSSNVTTMDFCQGYFP-CSV 1443 LSS LG+ S CDG+ Y NS +V T FC C+ Sbjct 2200 VLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPT--FCANRSAMCNW 2257 Query 1444 CLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAF 1503 CL DS+ YPAL+ +Q +S Y L++ +L A E LAYML+T F L L+ + F Sbjct 2258 CLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYF 2317 Query 1504 FGY------FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGC 1557 F + S+ + S W I P++ +VRMY A + + K Y H+++GC Sbjct 2318 FAQTSIFVDWRSYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGC 2373 Query 1558 TSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTF 1617 + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC+ HNWNC++CDT G+TF Sbjct 2374 KDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTF 2433 Query 1618 ISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNL 1677 I +EVA DL+ +RPIN TD+S Y VDSVTVK + + + GQ YER PL F NL Sbjct 2434 ICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNL 2493 Query 1678 DNLR----ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDV 1733 D L+ T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ V Sbjct 2494 DKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSV 2553 Query 1734 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1793 GDS+E++ KMFD++V++F + ++V +KL+ L++TA + +G VL+TF+ AAR Sbjct 2554 GDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGP 2613 Query 1794 V-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHI 1852 V++DV+T ++++ ++ +H DI++T +S NN++ +Y K ++++ DLG+ IDCNA + Sbjct 2614 AGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASV 2673 Query 1853 NAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKIS 1912 N V ++ N + +WN YM LS+ L++QIR A +K N+ FRLT + R N+++ + + Sbjct 2674 NQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFT 2733 Range 2: 854 to 1273 Score:191 bits(485), Expect:2e-48, Method:Compositional matrix adjust., Identities:135/421(32%), Positives:198/421(47%), Gaps:79/421(18%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVL-NEKCSVYTVESGTEVTEFACVVA 59 APVK V FG D V EV ++V + + + +D +L + + V+ + EFA VV Sbjct 854 APVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVK 913 Query 60 EAVVKTLQPVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEC 119 E V L + + DLD++ A Y F+ G+ SS M S +P + +E+C E Sbjct 914 EQVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEV 973 Query 120 E-----DEEETCEHEYGTE----------DDY-----KGLPLEFGASTETPHVEEEEE-- 157 E + E C E TE D++ + PL+ A T V+EE + Sbjct 974 EASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD-EAEDVTESVQEEAQPV 1032 Query 158 -----------------EEDWLDDAIEAEPEPEPLPEEP--------------------- 179 E + D +E P+ LP EP Sbjct 1033 EVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYEADTEQT 1092 Query 180 ---------------VNQFVGYLK--LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKH 222 V+ + +T+ V I D ++ A+ +V+VNAANTHLKH Sbjct 1093 QSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKH 1152 Query 223 GGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGED 282 GGG+AGA+N A+ GA+Q ESDEYI GPL VG S LL GH+LA+ LHVVGP+ A +D Sbjct 1153 GGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQD 1212 Query 283 VQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIV 342 V LL + Y+ N+ +++ PL+SAGIFG KP S + +T+V + VN + +Y + Sbjct 1213 VSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLT 1272 Query 343 L 343 + Sbjct 1273 I 1273 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 1156 to 2733 Score:684 bits(1766), Expect:0.0, Method:Compositional matrix adjust., Identities:496/1620(31%), Positives:797/1620(49%), Gaps:160/1620(9%) Query 411 INGKLYQDSQNMLRGEDMSFLEKDAPYIVGD-VITSG-----DITCVIIPAKKSGGTTEM 464 I G + S+ ++ E ++ P VGD V+ G +I V+ P ++ + Sbjct 1156 IAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSL 1215 Query 465 LARALKEVPVAEYITT-YPGQGCAG--------YTLEEAKTALKKCKSAFYVLPSETPNE 515 L++ K + + T G G Y + EAKT + ++ V S T + Sbjct 1216 LSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVD 1275 Query 516 KEEVLGTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVDYGVRFF 575 + L LR + A++ + +C D A ++ K + VD GV+++ Sbjct 1276 IPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD-GVQYY 1334 Query 576 FYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVSVSSPDAV 635 YTSK+ + I+ + N + +++MP+GYV+HGL+L +A +R + P V +++ + Sbjct 1335 CYTSKDTLDDILQQANK-SVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLANKEQ- 1392 Query 636 TAYNGYLTSSSK--TPEEYFVETTSLAGSYRDWSYSGQRTELGVEFLKRG---------- 683 L S P E F++ G Y W EL V+ L+ Sbjct 1393 ---EAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLV--EGELLVQDLRLNKLLHWSDQTI 1447 Query 684 ---DKIVY---HTTGSPIEFHLDGEVLPLDKLKSLLSLREVK--TIKVFTTVDNTNLHTH 735 D + Y ++T P E L ++ L R + TI+V TVD N T Sbjct 1448 CYKDSVFYVVKNSTAFPFE--------TLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTV 1499 Query 736 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFV---LPSDDTLRSEAFEYYHTID 792 +++ TY Q G + +GAD++ P G + ++ L +D+T + E Y +D Sbjct 1500 VLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALK--ELYGPVD 1557 Query 793 ESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQV-EVKFNAPALQEA 851 +FL R+ S KWK + S+K +DNNCYL++V++ L + ++KF PALQ A Sbjct 1558 PTFLHRFYSLKAAVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHA 1617 Query 852 YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-SAKRVLNVVCKHCGQ 910 + + + GD+ +F ALI+AY N T G D + +L A L SA+ V C CG Sbjct 1618 FMKHKGGDSTDFIALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGI 1677 Query 911 KTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQ 970 K L+G++A Y+G + ++L+ ++ C CG + +V+ + ++++S P E + Sbjct 1678 KDVVLQGLKACCYVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVT 1737 Query 971 QGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSEYKGPVTDVFYKETS 1025 F+ N + G GHY H K L + D ++K S++K VTDV + Sbjct 1738 TSTAPDFVAFNVFQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQK 1797 Query 1026 YTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYT-EQPIDLVPTQPMPNASFDNFKLT 1084 Y++ V Y LDG TE++P L +Y K Y+T E P+ P + + + N L Sbjct 1798 YSSDCNVVRYSLDGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLV 1857 Query 1085 CSNTKFADD-----LNQMTGF--KKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAK 1137 S+ + D N + GF KP +++ T +F P +GDV+ ++ Y +K GA Sbjct 1858 SSDGQPGGDAISLSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAM 1917 Query 1138 LVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQ 1197 KPILW + + K N LR ++ P++ N F L VE T Sbjct 1918 YKGKPILWVNKASYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTP---------- 1967 Query 1198 TTTSEEVVENPTV-----QKE--IIECD-VKTTEVVGNVILKPSEEGVKVTQELGHEDLM 1249 VE PTV Q+E I++C + V NV + G V + L EDL Sbjct 1968 -------VEPPTVDVVALQQEMTIVKCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLH 2020 Query 1250 AAYVE-ETSITIKKPNELSLALGLKTLAT---HGAAAINSVPWSKILAYVKPFLGQ---- 1301 YV+ + + + K N LS L L T+ + + AA S+ L + F + Sbjct 2021 TLYVDPKYQVIVLKDNVLSSMLRLHTVESGDINVVAASGSLTRKVKLLFRASFYFKEFAT 2080 Query 1302 ----TAVITSNCIKKCVQR------VFSNYMPYV-ITLLFQLCTFTKST--NSRIKASLP 1348 +CIK V+ + + +V + + L F+ S + +K S Sbjct 2081 RTFTATTAVGSCIKSVVRHLGVTKGILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSAL 2140 Query 1349 TT---IAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGV 1405 T + N VK +D+ ++ ++ + +++ L + L S+ Y V Sbjct 2141 KTAGVVTGNVVKQCCTAAVDLSMDKLRRVDWKSTLRLLLMLCTTMVLLSSV-YHLYVFNQ 2199 Query 1406 CLSS--------------------LGVPSYCDGVRELY-INSSNVTTMDFCQGYFP-CSV 1443 LSS LG+ S CDG+ Y NS +V T FC C+ Sbjct 2200 VLSSDVMFEDAQGLKKFYKEVRAYLGISSACDGLASAYRANSFDVPT--FCANRSAMCNW 2257 Query 1444 CLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAF 1503 CL DS+ YPAL+ +Q +S Y L++ +L A E LAYML+T F L L+ + F Sbjct 2258 CLISQDSITHYPALKMVQTHLSHYVLNIDWLWFAFETGLAYMLYTSAFNWLLLAGTLHYF 2317 Query 1504 FGY------FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGC 1557 F + S+ + S W I P++ +VRMY A + + K Y H+++GC Sbjct 2318 FAQTSIFVDWRSYNYAVSSAFWLFTHI----PMAGLVRMYNLLACLWLLRKFYQHVINGC 2373 Query 1558 TSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTF 1617 + C++CYKRNR TRVE +T+V G KR+FY+ ANGG FC+ HNWNC++CDT G+TF Sbjct 2374 KDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGISFCRRHNWNCVDCDTAGVGNTF 2433 Query 1618 ISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNL 1677 I +EVA DL+ +RPIN TD+S Y VDSVTVK + + + GQ YER PL F NL Sbjct 2434 ICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFNYRRDGQPFYERFPLCAFTNL 2493 Query 1678 DNLR----ANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDV 1733 D L+ T G N I++D + +ES A+SA VYYSQ++C+ ILL+D +LV+ V Sbjct 2494 DKLKFKEVCKTTTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLVTSV 2553 Query 1734 GDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG 1793 GDS+E++ KMFD++V++F + ++V +KL+ L++TA + +G VL+TF+ AAR Sbjct 2554 GDSSEIATKMFDSFVNSFVSLYNVTRDKLEKLISTARDGVRRGDNFHSVLTTFIDAARGP 2613 Query 1794 V-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHI 1852 V++DV+T ++++ ++ +H DI++T +S NN++ +Y K ++++ DLG+ IDCNA + Sbjct 2614 AGVESDVETNEIVDSVQYAHKHDIQITNESYNNYVPSYVKPDSVSTSDLGSLIDCNAASV 2673 Query 1853 NAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKIS 1912 N V ++ N + +WN YM LS+ L++QIR A +K N+ FRLT + R N+++ + + Sbjct 2674 NQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLRANDNILSVRFT 2733 Range 2: 854 to 1273 Score:191 bits(485), Expect:1e-48, Method:Compositional matrix adjust., Identities:139/427(33%), Positives:202/427(47%), Gaps:91/427(21%) Query 1 APVKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVL-NEKCSVYTVESGTEVTEFACVVA 59 APVK V FG D V EV ++V + + + +D +L + + V+ + EFA VV Sbjct 854 APVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVK 913 Query 60 EAV----VKTLQ--PVSDLLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEE 113 E V VK L+ P+ D DLD++ A Y F+ G+ SS M S +P + + Sbjct 914 EQVSDLLVKLLRGMPIPDF------DLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECD 967 Query 114 EDCEECE-----DEEETCEHEYGTE----------DDY-----KGLPLEFGASTETPHVE 153 E+C E E + E C E TE D++ + PL+ A T V+ Sbjct 968 EECSEVEASDLEEGESECISETSTEQVDVSHEISDDEWAAAVDEAFPLD-EAEDVTESVQ 1026 Query 154 EEEE-------------------EEDWLDDAIEAEPEPEPLPEEP--------------- 179 EE + E + D +E P+ LP EP Sbjct 1027 EEAQPVEVPVEDIAQVVIADTLQETPVVSDTVEVPPQVVKLPSEPQTIQPEVKEVAPVYE 1086 Query 180 ---------------------VNQFVGYLK--LTDNVAIKCIDIVKEAQSAKPTVIVNAA 216 V+ + +T+ V I D ++ A+ +V+VNAA Sbjct 1087 ADTEQTQSVTVKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAA 1146 Query 217 NTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPN 276 NTHLKHGGG+AGA+N A+ GA+Q ESDEYI GPL VG S LL GH+LA+ LHVVGP+ Sbjct 1147 NTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPD 1206 Query 277 LNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKS 336 A +DV LL + Y+ N+ +++ PL+SAGIFG KP S + +T+V + VN + Sbjct 1207 ARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQD 1266 Query 337 LYDQIVL 343 +Y + + Sbjct 1267 VYKSLTI 1273 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6T6.1 Length: 4248 Range 1: 1207 to 2610 Score:670 bits(1728), Expect:0.0, Method:Compositional matrix adjust., Identities:453/1452(31%), Positives:727/1452(50%), Gaps:94/1452(6%) Query 511 ETPNEKEEVL-GTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVD 569 +P + VL VS + M+ +E L+P+ +D A + ++R +EG+ Sbjct 1207 SSPGDCNTVLVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFS 1262 Query 570 Y-GVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVS 628 G F+ Y+ +P+ + LNSL PL+ +P G++ +G L +A MR L P V Sbjct 1263 SNGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVV 1322 Query 629 VSSPDAVTAYNGYLT---SSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVE------F 679 V S +V Y Y S T + FV L G+ RDW +T V+ Sbjct 1323 VPSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDV--LQTTCTVDRKVYKTI 1379 Query 680 LKRG-------DKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVK---TIKVFTTVDN 729 KRG D +Y TG + + + K ++ L + IKV TTVD Sbjct 1380 CKRGNTYLCFDDTNLYAITGDVVL-----KFATVSKARAYLETKLCAPEPLIKVLTTVDG 1434 Query 730 TNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF-EYY 788 N T +V + +Y Q G + DG D + P EG + + + A EYY Sbjct 1435 INYSTVLVSTAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYY 1494 Query 789 HTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPAL 848 D + + R MS + W + V G + D+NCYL+ + LQ ++V F+ P + Sbjct 1495 GVDDSNIIARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWV 1554 Query 849 QEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHC 908 AY + G+ +++A T G D ++ +L H + +A+RV+ VC+HC Sbjct 1555 CRAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHC 1613 Query 909 GQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYK 968 G G +A + G++ D+L VS+ C CGR A +Y+ +Q+S +++MS P + Sbjct 1614 GVSQMVFTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVP 1673 Query 969 LQ-QGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYT 1027 L G + A + G GHY + + D + S+ K P TD+ Y TS+T Sbjct 1674 LDTSGIWKTAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFT 1733 Query 1028 TAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLT-CS 1086 + K +Y LDGV T I+P Y K+G+ Y+T PI++V P S+D F L+ C Sbjct 1734 SDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQ 1792 Query 1087 NTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWH 1146 N + A+ N+ K +L +T +P++ GDVVAI + + G+ + KP+L+ Sbjct 1793 NPQLAESFNKAINATKTGPMKL-LTMYPNVAGDVVAISDDNV-VAHPYGSLHMGKPVLF- 1849 Query 1147 INQTTNKTTYKPNIWC-LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVV 1205 +PN W L L ST V+T N+++VL V D L ++T SEE + Sbjct 1850 --------VTRPNTWKKLVPLLSTVVVNTPNTYDVLAV------DPLPVNNET--SEEPI 1893 Query 1206 ENPTVQKEIIECDVKTTEVVGNVILKPSEEG-VKVTQELGHEDLMAAYVEETS-ITIKKP 1263 +V+ I +K T V+ P +G + +E DL YVE + K Sbjct 1894 ---SVKAPIPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKA 1950 Query 1264 NELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMP 1323 + LS LGL+ + + +N + + AY L T +T++ + V R Sbjct 1951 SHLSKVLGLRV--SDSSLHVNHLSKGVVYAYAATRL--TTRVTTSLLGGLVTRSVRKTAD 2006 Query 1324 YV------------ITLLFQL-CTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINY 1370 +V + L +QL F + IA N+ V L+ + Sbjct 2007 FVRSTNPGSKCVGLLCLFYQLFMRFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRSR 2066 Query 1371 VKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVR---ELYINSS 1427 + +S+L ++ ++L + LT + GV LS PS + + + Sbjct 2067 CGNISWSRLLKLLRYMLYIWFVWTCLT----ICGVWLSEPYAPSLVTRFKYFLGIVMPCD 2122 Query 1428 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 1487 V + G+ +C++G+DSLD YPAL Q S + T++ + E AY+L+ Sbjct 2123 YVLVNETGTGWLH-HLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLY 2179 Query 1488 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 1547 T ++G+ A++ Y + NSWL+ F+ I+++ P ++M+RMYI A + + Sbjct 2180 TPALPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCY 2238 Query 1548 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 1607 K ++H+ GC + C+MCYK+N A R+EC+T+VNGVKR FYV ANGG FC HNWNC++ Sbjct 2239 KGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVS 2298 Query 1608 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 1667 CDT+ STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YE Sbjct 2299 CDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYE 2358 Query 1668 RHPLSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLD 1726 R P+ F N+ L + KG+ P NV+VFD ++ EE+A K+A++YY+QL C+PILL+D Sbjct 2359 RFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVD 2418 Query 1727 QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTF 1786 + +V VGD ++ MF+AY + +S+ M+K+K L +TA +++ G+ ++ VL F Sbjct 2419 KRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVF 2478 Query 1787 VSAARQGVVD--TDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGAC 1844 V + R D +DVDT D++ C++L H E T DS NN + TY K + ++ ++G Sbjct 2479 VGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQF 2538 Query 1845 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1904 + NA+++NA +AK V+L+W D++ LSE +R+Q++ AA+K + +T ++ + V Sbjct 2539 MTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADV 2598 Query 1905 NVITTKISLKGG 1916 + T + GG Sbjct 2599 PCMVTPFKIIGG 2610 Range 2: 774 to 1126 Score:189 bits(480), Expect:5e-48, Method:Compositional matrix adjust., Identities:133/383(35%), Positives:201/383(52%), Gaps:36/383(9%) Query 3 VKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 V VTFG++ V + V ++++ +D +L++ + + VE GT++ + ACVV +AV Sbjct 774 VSKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAV 833 Query 63 VKTLQPVSDLLTP-----MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCE 117 + L SDL + I+L+++ + +++ E+ L MY S +D E Sbjct 834 YERL---SDLFSDCPAELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDD-E 889 Query 118 ECEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPE 177 +D E+T E ++D + G E E+ ++ + D A P Sbjct 890 MVDDIEDTVEQASDSDDQWLG-------------DEGAEDCDNTIQDVDVATSMTTP--- 933 Query 178 EPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGA 237 GY K+ ++V IKC DIV+EA++ V+VNAAN +L HGGGVAGALN+ATN A Sbjct 934 ------CGYTKIAEHVYIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNA 987 Query 238 MQNESDEYIRQNGPLTVGGSCLLSGHNLAEK-CLHVVGPNLNAGEDVQLLKRAYENFNSQ 296 MQ ES EYI+ NG L GG LLS H LA LHVVGP+ G+D+ LL Y + Sbjct 988 MQKESSEYIKANGSLQPGGHVLLSSHGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGF 1047 Query 297 DVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESP 356 D +L PL+SAGIFG +SL V+ V Y+ V D+ LY++ + D P+ Sbjct 1048 DSVLTPLVSAGIFGFTVEESLCSLVKNVACTTYVVVYDRQLYERALATSFDVPGPQ---S 1104 Query 357 NKEEEPKLEEPKAVQPVAEKPVD 379 + + P ++ +AV+ V E VD Sbjct 1105 SVQHVPAIDWAEAVE-VQESIVD 1126 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 1207 to 2610 Score:669 bits(1726), Expect:0.0, Method:Compositional matrix adjust., Identities:453/1452(31%), Positives:727/1452(50%), Gaps:94/1452(6%) Query 511 ETPNEKEEVL-GTVSWNLREMLAHAEETRKLMPICLDVRAIMATIQRKYKGIKVQEGIVD 569 +P + VL VS + M+ +E L+P+ +D A + ++R +EG+ Sbjct 1207 SSPGDCNTVLVDVVSMSFSAMVNFGKEKGLLIPVVIDYPAFLKVLKR----FSPKEGLFS 1262 Query 570 Y-GVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEAARCMRSLKAPAVVS 628 G F+ Y+ +P+ + LNSL PL+ +P G++ +G L +A MR L P V Sbjct 1263 SNGYEFYGYSRDKPLHEVSKDLNSLGRPLIMIPFGFIVNGQTLAVSAVSMRGLTVPHTVV 1322 Query 629 VSSPDAVTAYNGYLT---SSSKTPEEYFVETTSLAGSYRDWSYSGQRTELGVE------F 679 V S +V Y Y S T + FV L G+ RDW +T V+ Sbjct 1323 VPSESSVPLYRAYFNGVFSGDTTAVQDFVVDILLNGA-RDWDV--LQTTCTVDRKVYKTI 1379 Query 680 LKRG-------DKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVK---TIKVFTTVDN 729 KRG D +Y TG + + + K ++ L + IKV TTVD Sbjct 1380 CKRGNTYLCFDDTNLYAITGDVVL-----KFATVSKARAYLETKLCAPEPLIKVLTTVDG 1434 Query 730 TNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAF-EYY 788 N T +V + +Y Q G + DG D + P EG + + + A EYY Sbjct 1435 INYSTVLVSTAQSYRAQIGTVFCDGHDWSNKNPMPTDEGTHLYKQDNFSSAEVTAIREYY 1494 Query 789 HTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPAL 848 D + + R MS + W + V G + D+NCYL+ + LQ ++V F+ P + Sbjct 1495 GVDDSNIIARAMSIRKTVQTWPYTVVDGRVLLAQRDSNCYLNVAISLLQDIDVSFSTPWV 1554 Query 849 QEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHC 908 AY + G+ +++A T G D ++ +L H + +A+RV+ VC+HC Sbjct 1555 CRAYDALKGGNPLPMAEVLIALGKATPGVSDDAHMVLSAVLNHGTV-TARRVMQTVCEHC 1613 Query 909 GQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYK 968 G G +A + G++ D+L VS+ C CGR A +Y+ +Q+S +++MS P + Sbjct 1614 GVSQMVFTGTDACTFYGSVVLDDLYAPVSVVCQCGRPAIRYVSEQKSPWLLMSCTPTQVP 1673 Query 969 LQ-QGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFYKETSYT 1027 L G + A + G GHY + + D + S+ K P TD+ Y TS+T Sbjct 1674 LDTSGIWKTAIVFRGPVTAGHYMYAVNGTLISVYDANTRRRTSDLKLPATDILYGPTSFT 1733 Query 1028 TAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNASFDNFKLT-CS 1086 + K +Y LDGV T I+P Y K+G+ Y+T PI++V P S+D F L+ C Sbjct 1734 SDSKVETYYLDGVKRTTIDPDFSKYVKRGDYYFTTAPIEVV-AAPKLVTSYDGFYLSSCQ 1792 Query 1087 NTKFADDLNQMTGFKKPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILWH 1146 N + A+ N+ K +L +T +P++ GDVVAI + + G+ + KP+L+ Sbjct 1793 NPQLAESFNKAINATKTGPMKL-LTMYPNVAGDVVAISDDNV-VAHPYGSLHMGKPVLF- 1849 Query 1147 INQTTNKTTYKPNIWC-LRCLWSTKPVDTSNSFEVLVVEDTQGMDNLACESQTTTSEEVV 1205 +PN W L L ST V+T N+++VL V D L ++T SEE + Sbjct 1850 --------VTRPNTWKKLVPLLSTVVVNTPNTYDVLAV------DPLPVNNET--SEEPI 1893 Query 1206 ENPTVQKEIIECDVKTTEVVGNVILKPSEEG-VKVTQELGHEDLMAAYVEETS-ITIKKP 1263 +V+ I +K T V+ P +G + +E DL YVE + K Sbjct 1894 ---SVKAPIPLYGLKATMVLNGTTYVPGNKGHLLCLKEFTLTDLQTFYVEGVQPFVLLKA 1950 Query 1264 NELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSNCIKKCVQRVFSNYMP 1323 + LS LGL+ + + +N + + AY L T +T++ + V R Sbjct 1951 SHLSKVLGLRV--SDSSLHVNHLSKGVVYAYAATRL--TTRVTTSLLGGLVTRSVRKTAD 2006 Query 1324 YV------------ITLLFQL-CTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVCINY 1370 +V + L +QL F + IA N+ V L+ + Sbjct 2007 FVRSTNPGSKCVGLLCLFYQLFMRFWLLVKKPPIVKVSGIIAYNTGCGVTTCVLNYLRSR 2066 Query 1371 VKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVR---ELYINSS 1427 + +S+L ++ ++L + LT + GV LS PS + + + Sbjct 2067 CGNISWSRLLKLLRYMLYIWFVWTCLT----ICGVWLSEPYAPSLVTRFKYFLGIVMPCD 2122 Query 1428 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 1487 V + G+ +C++G+DSLD YPAL Q S + T++ + E AY+L+ Sbjct 2123 YVLVNETGTGWLH-HLCMAGMDSLD-YPALRMQQHRYGS-PYNYTYILMLLEAFFAYLLY 2179 Query 1488 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVW 1547 T ++G+ A++ Y + NSWL+ F+ I+++ P ++M+RMYI A + + Sbjct 2180 TPALPIVGILAVLHLIVLYLPIP-LGNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWLCY 2238 Query 1548 KSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLN 1607 K ++H+ GC + C+MCYK+N A R+EC+T+VNGVKR FYV ANGG FC HNWNC++ Sbjct 2239 KGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTHFCTKHNWNCVS 2298 Query 1608 CDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYE 1667 CDT+ STFI +VA DLS QFKRPI TD++ Y V SV V+NG ++ YF+ GQ++YE Sbjct 2299 CDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCYFESDGQRSYE 2358 Query 1668 RHPLSHFVNLDNLRANNTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLD 1726 R P+ F N+ L + KG+ P NV+VFD ++ EE+A K+A++YY+QL C+PILL+D Sbjct 2359 RFPMDAFTNVSKLHYSELKGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVD 2418 Query 1727 QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTF 1786 + +V VGD ++ MF+AY + +S+ M+K+K L +TA +++ G+ ++ VL F Sbjct 2419 KRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKHLYSTALQQISSGMTVESVLKVF 2478 Query 1787 VSAARQGVVD--TDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGAC 1844 V + R D +DVDT D++ C++L H E T DS NN + TY K + ++ ++G Sbjct 2479 VGSTRAEAKDLESDVDTNDLVSCIRLCHQEGWEWTTDSWNNLVPTYIKQDTLSTLEVGQF 2538 Query 1845 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1904 + NA+++NA +AK V+L+W D++ LSE +R+Q++ AA+K + +T ++ + V Sbjct 2539 MTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLKADV 2598 Query 1905 NVITTKISLKGG 1916 + T + GG Sbjct 2599 PCMVTPFKIIGG 2610 Range 2: 774 to 1126 Score:189 bits(480), Expect:6e-48, Method:Compositional matrix adjust., Identities:133/383(35%), Positives:201/383(52%), Gaps:36/383(9%) Query 3 VKGVTFGEDTVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 V VTFG++ V + V ++++ +D +L++ + + VE GT++ + ACVV +AV Sbjct 774 VSKVTFGDEEVHTIPNTVTVNFSYDVCEGLDAILDKVMAPFQVEEGTKLEDLACVVQKAV 833 Query 63 VKTLQPVSDLLTP-----MGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCE 117 + L SDL + I+L+++ + +++ E+ L MY S +D E Sbjct 834 YERL---SDLFSDCPAELRPINLEDFLTSECFVYSKDYEKILMPEMYFSLEDAVPVDD-E 889 Query 118 ECEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPE 177 +D E+T E ++D + G E E+ ++ + D A P Sbjct 890 MVDDIEDTVEQASDSDDQWLG-------------DEGAEDCDNTIQDVDVATSMTTP--- 933 Query 178 EPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGA 237 GY K+ ++V IKC DIV+EA++ V+VNAAN +L HGGGVAGALN+ATN A Sbjct 934 ------CGYTKIAEHVYIKCADIVQEARNYSYAVLVNAANVNLHHGGGVAGALNRATNNA 987 Query 238 MQNESDEYIRQNGPLTVGGSCLLSGHNLAEK-CLHVVGPNLNAGEDVQLLKRAYENFNSQ 296 MQ ES EYI+ NG L GG LLS H LA LHVVGP+ G+D+ LL Y + Sbjct 988 MQKESSEYIKANGSLQPGGHVLLSSHGLASHGILHVVGPDKRLGQDLALLDAVYAAYTGF 1047 Query 297 DVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESP 356 D +L PL+SAGIFG +SL V+ V Y+ V D+ LY++ + D P+ Sbjct 1048 DSVLTPLVSAGIFGFTVEESLCSLVKNVACTTYVVVYDRQLYERALATSFDVPGPQ---S 1104 Query 357 NKEEEPKLEEPKAVQPVAEKPVD 379 + + P ++ +AV+ V E VD Sbjct 1105 SVQHVPAIDWAEAVE-VQESIVD 1126 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 1565 to 2750 Score:514 bits(1323), Expect:6e-149, Method:Compositional matrix adjust., Identities:369/1226(30%), Positives:605/1226(49%), Gaps:70/1226(5%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + +G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N+LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQL--------CTFTKSTNSRIKASLPTTIAKNSVKSV 1359 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 1360 --AKLCLDVCI-NYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGVPSY 1415 + + CI + F+ ++ V++ +G L T+V + S+ + + Sbjct 2191 KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTI 2250 Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDLT-F 1473 CD LY +C G C CL+G D LD+Y A++ +Q +D T Sbjct 2251 CD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV 2306 Query 1474 LGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVS 1531 L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M P Sbjct 2307 LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAH 2366 Query 1532 AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + V A Sbjct 2367 VFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 2426 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 NGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2427 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 2486 Query 1652 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ +A+ Sbjct 2487 CYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAA 2544 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATAHS Sbjct 2545 VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHS 2604 Query 1772 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTY 1830 + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + TY Sbjct 2605 SIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTY 2664 Query 1831 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNN 1890 K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A K Sbjct 2665 LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTG 2724 Query 1891 IPFRLTCATTRQVVNVITTKISLKGG 1916 + +LT V+V+TT SLKGG Sbjct 2725 LKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:85.5 bits(210), Expect:2e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 972 Score:69.7 bits(169), Expect:1e-11, Method:Compositional matrix adjust., Identities:41/120(34%), Positives:69/120(57%), Gaps:5/120(4%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+S++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEE 972 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 1565 to 2750 Score:513 bits(1320), Expect:9e-149, Method:Compositional matrix adjust., Identities:369/1226(30%), Positives:605/1226(49%), Gaps:70/1226(5%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + +G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGENFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N+LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANDLSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQL--------CTFTKSTNSRIKASLPTTIAKNSVKSV 1359 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 1360 --AKLCLDVCI-NYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGVPSY 1415 + + CI + F+ ++ V++ +G L T+V + S+ + + Sbjct 2191 KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTI 2250 Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDLT-F 1473 CD LY +C G C CL+G D LD+Y A++ +Q +D T Sbjct 2251 CD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV 2306 Query 1474 LGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVS 1531 L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M P Sbjct 2307 LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAH 2366 Query 1532 AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + V A Sbjct 2367 VFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 2426 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 NGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2427 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 2486 Query 1652 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ +A+ Sbjct 2487 CYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAA 2544 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATAHS Sbjct 2545 VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHS 2604 Query 1772 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTY 1830 + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + TY Sbjct 2605 SIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTY 2664 Query 1831 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNN 1890 K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A K Sbjct 2665 LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTG 2724 Query 1891 IPFRLTCATTRQVVNVITTKISLKGG 1916 + +LT V+V+TT SLKGG Sbjct 2725 LKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:85.5 bits(210), Expect:2e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1019 Score:69.3 bits(168), Expect:2e-11, Method:Compositional matrix adjust., Identities:50/175(29%), Positives:88/175(50%), Gaps:13/175(7%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVVDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+S++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEE 972 Query 119 CEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPE 173 + + + L ++ E E+EE + L+D ++ P E Sbjct 973 --------SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 1565 to 2750 Score:512 bits(1318), Expect:2e-148, Method:Compositional matrix adjust., Identities:369/1226(30%), Positives:604/1226(49%), Gaps:70/1226(5%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQL--------CTFTKSTNSRIKASLPTTIAKNSVKSV 1359 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 1360 --AKLCLDVCI-NYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGVPSY 1415 + + CI + F+ ++ V++ +G L T+V + S+ + + Sbjct 2191 KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTI 2250 Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDLT-F 1473 CD LY +C G C CL+G D LD+Y A++ +Q +D T Sbjct 2251 CD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV 2306 Query 1474 LGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVS 1531 L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M P Sbjct 2307 LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAH 2366 Query 1532 AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + V A Sbjct 2367 VFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 2426 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 NGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2427 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 2486 Query 1652 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ +A+ Sbjct 2487 CYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAA 2544 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATAHS Sbjct 2545 VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHS 2604 Query 1772 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTY 1830 + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + TY Sbjct 2605 SIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTY 2664 Query 1831 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNN 1890 K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A K Sbjct 2665 LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTG 2724 Query 1891 IPFRLTCATTRQVVNVITTKISLKGG 1916 + +LT V+V+TT SLKGG Sbjct 2725 LKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:85.5 bits(210), Expect:2e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 972 Score:69.3 bits(168), Expect:2e-11, Method:Compositional matrix adjust., Identities:41/120(34%), Positives:69/120(57%), Gaps:5/120(4%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+S++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEE 972 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 1565 to 2750 Score:511 bits(1315), Expect:4e-148, Method:Compositional matrix adjust., Identities:369/1226(30%), Positives:604/1226(49%), Gaps:70/1226(5%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYNPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTICDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES S+E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKESKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N LS+A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRYVVRTANALSMAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQL--------CTFTKSTNSRIKASLPTTIAKNSVKSV 1359 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 1360 --AKLCLDVCI-NYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGVPSY 1415 + + CI + F+ ++ V++ +G L T+V + S+ + + Sbjct 2191 KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKSTFSLVTI 2250 Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDLT-F 1473 CD LY +C G C CL+G D LD+Y A++ +Q +D T Sbjct 2251 CD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV 2306 Query 1474 LGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVS 1531 L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M P Sbjct 2307 LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANMLPAH 2366 Query 1532 AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 +R YI ASF ++ + H+ GC+ C+ CYKRNR+ RV+C+TIV G+ R + V A Sbjct 2367 VFMRFYIIIASFIKLFILFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 2426 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 NGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2427 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 2486 Query 1652 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 + L++++ GQ+TY+ S FV+ NL + KG ++V+V + + +++ +A+ Sbjct 2487 CYMRLFYERDGQRTYDDVNASLFVDYSNLLHSKVKGVPNMHVVVVENDA--DKANFLNAA 2544 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATAHS Sbjct 2545 VFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHS 2604 Query 1772 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTY 1830 + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + TY Sbjct 2605 SIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTY 2664 Query 1831 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNN 1890 K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A K Sbjct 2665 LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTG 2724 Query 1891 IPFRLTCATTRQVVNVITTKISLKGG 1916 + +LT V+V+TT SLKGG Sbjct 2725 LKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:85.5 bits(210), Expect:2e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:78/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAEKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 972 Score:68.9 bits(167), Expect:2e-11, Method:Compositional matrix adjust., Identities:41/120(34%), Positives:69/120(57%), Gaps:5/120(4%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+S++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLASKLYCAFTAPEDDDFLEE 972 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 1565 to 2750 Score:508 bits(1308), Expect:4e-147, Method:Compositional matrix adjust., Identities:364/1229(30%), Positives:598/1229(48%), Gaps:76/1229(6%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 1367 N I C N++ ++ LLF + K T +A + L Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNA 2186 Query 1368 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVRELYIN 1425 K ++ I+ + LL + Y + L +G +P++ + + N Sbjct 2187 FLTFKWSVVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKN 2243 Query 1426 SSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 1471 + ++ T+ +C G C CL+G D LD+Y A++ +Q +D Sbjct 2244 TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 1472 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 1528 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 1529 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 1588 P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 1589 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 1648 ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 AMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 1649 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 1708 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ Sbjct 2484 QVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFL 2541 Query 1709 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1768 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 1769 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 1827 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 1828 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 1887 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 1888 KNNIPFRLTCATTRQVVNVITTKISLKGG 1916 K + +LT V+V+TT SLKGG Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:9e-17, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 972 Score:67.0 bits(162), Expect:8e-11, Method:Compositional matrix adjust., Identities:40/120(33%), Positives:68/120(56%), Gaps:5/120(4%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE 972 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 1565 to 2750 Score:507 bits(1306), Expect:5e-147, Method:Compositional matrix adjust., Identities:364/1229(30%), Positives:598/1229(48%), Gaps:76/1229(6%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCLDVC 1367 N I C N++ ++ LLF + K T +A + L Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADN----KVIYTTEVASKLTCKLVALAFKNA 2186 Query 1368 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVRELYIN 1425 K ++ I+ + LL + Y + L +G +P++ + + N Sbjct 2187 FLTFKWSVVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQWIKN 2243 Query 1426 SSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDL 1471 + ++ T+ +C G C CL+G D LD+Y A++ +Q +D Sbjct 2244 TFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDY 2303 Query 1472 T-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMA 1528 T L + E +++Y L+T +FY L +Q + F+ ++ W + ++S+ M Sbjct 2304 TGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSVRLLVSLANML 2363 Query 1529 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 1588 P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + Sbjct 2364 PAHVFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYD 2423 Query 1589 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 1648 ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2424 AMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVK 2483 Query 1649 VKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 1708 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ Sbjct 2484 QVGCYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFL 2541 Query 1709 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1768 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+AT Sbjct 2542 NAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIAT 2601 Query 1769 AHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFM 1827 AHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + Sbjct 2602 AHSSIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLV 2661 Query 1828 LTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 1887 TY K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A Sbjct 2662 PTYLKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACC 2721 Query 1888 KNNIPFRLTCATTRQVVNVITTKISLKGG 1916 K + +LT V+V+TT SLKGG Sbjct 2722 KTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:9e-17, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1019 Score:66.6 bits(161), Expect:9e-11, Method:Compositional matrix adjust., Identities:49/175(28%), Positives:87/175(49%), Gaps:13/175(7%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE 972 Query 119 CEDEEETCEHEYGTEDDYKGLPLEFGASTETPHVEEEEEEEDWLDDAIEAEPEPE 173 + + + L ++ E E+EE + L+D ++ P E Sbjct 973 --------SGVEEDDVEGEETDLTVTSAGEPCVASEQEESSEILEDTLDDGPCVE 1019 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 1565 to 2750 Score:506 bits(1303), Expect:2e-146, Method:Compositional matrix adjust., Identities:367/1226(30%), Positives:602/1226(49%), Gaps:70/1226(5%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQL--------CTFTKSTNSRIKASLPTTIAKNSVKSV 1359 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 1360 --AKLCLDVCI-NYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGVPSY 1415 + + CI + F+ ++ V++ +G L T+V ++ ++ + + Sbjct 2191 KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLVTI 2250 Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDLT-F 1473 CD LY +C G C CL+G D LD+Y A++ +Q +D T Sbjct 2251 CD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV 2306 Query 1474 LGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVS 1531 L + E +++Y L+T +FY L +Q + + ++ W + ++S+ M P Sbjct 2307 LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSLANMLPAH 2366 Query 1532 AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V A Sbjct 2367 VFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 2426 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 NGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2427 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 2486 Query 1652 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ +A+ Sbjct 2487 CYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAA 2544 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATAHS Sbjct 2545 VFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHS 2604 Query 1772 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTY 1830 + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + TY Sbjct 2605 SIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTY 2664 Query 1831 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNN 1890 K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A K Sbjct 2665 LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTG 2724 Query 1891 IPFRLTCATTRQVVNVITTKISLKGG 1916 + LT V+V+TT SLKGG Sbjct 2725 LKLELTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:1e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 972 Score:64.3 bits(155), Expect:6e-10, Method:Compositional matrix adjust., Identities:39/120(33%), Positives:67/120(55%), Gaps:5/120(4%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C + V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE 972 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 1565 to 2750 Score:506 bits(1302), Expect:2e-146, Method:Compositional matrix adjust., Identities:367/1226(30%), Positives:602/1226(49%), Gaps:70/1226(5%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCSKWQVVFNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + +KF QEA+ R+G A F +L+LA G+ D R+ + + +L A Sbjct 1682 SLNLKFKIVQWQEAWLEFRSGRPARFVSLVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K GV+AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGVDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ + GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFKGD-KVGHYVHVKCEQSYQLYDASNVKKVTDVTGNLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E VT +P GDVV Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDILNAKLGFDSSKEFVEYKVTEWPTATGDVVLATDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMDNL 1192 G KP++W H + N TY ++ + N F+VL V+D ++ Sbjct 1976 GCITFGKPVIWLSHEQASLNSLTY----------FNRPLLVDENKFDVLKVDDVDDGGDI 2025 Query 1193 ACESQTTTSEEV--VENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ES +E+ ++ V+K +V +VI+ +K + L D+ Sbjct 2026 S-ESDAKEPKEINIIKLSGVKKPF--------KVEDSVIVNDDTSEIKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVITS 1307 ++ ++ N LS A+ + T+ + S+P + L +KP + Sbjct 2077 MWLTGCRCVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPVFNVVKAV-R 2135 Query 1308 NCIKKCVQRVFSNYMPYVITLLFQL--------CTFTKSTNSRIKASLPTTIAKNSVKSV 1359 N I C N++ ++ LLF +T S++ L KN+ + Sbjct 2136 NKISACF-----NFIKWLFVLLFGWIKISADNKVIYTTEVASKLTCKLVALAFKNAFLTF 2190 Query 1360 --AKLCLDVCI-NYVKSPKFSKLFTIVMWLLLLSICLGSL-TYVTAVLGVCLSSLGVPSY 1415 + + CI + F+ ++ V++ +G L T+V ++ ++ + + Sbjct 2191 KWSVVARGACIIATIFLLWFNFIYANVIFSDFYLPKIGFLPTFVGKIVQWIKNTFSLVTI 2250 Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK-LDLT-F 1473 CD LY +C G C CL+G D LD+Y A++ +Q +D T Sbjct 2251 CD----LYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAFVDYTGV 2306 Query 1474 LGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIVQMAPVS 1531 L + E +++Y L+T +FY L +Q + + ++ W + ++S+ M P Sbjct 2307 LKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELLMLSTLHWSVRLLVSLANMLPAH 2366 Query 1532 AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R + V A Sbjct 2367 VFMRFYIIIASFIKLFSLFRHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMA 2426 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 NGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V V Sbjct 2427 NGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVG 2486 Query 1652 GALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 + L++D+ GQ+TY+ S FV+ NL + K ++V+V + + +++ +A+ Sbjct 2487 CYMRLFYDRDGQRTYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKANFLNAA 2544 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL+ATAHS Sbjct 2545 VFYAQSLFRPILMVDKILITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNALIATAHS 2604 Query 1772 ELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTY 1830 + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCNN + TY Sbjct 2605 SIKQGTQICKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCNNLVPTY 2664 Query 1831 NKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNN 1890 K +N+ DLG I +A+H+ VAK VS +W+V + LS + +++ A K Sbjct 2665 LKGDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTG 2724 Query 1891 IPFRLTCATTRQVVNVITTKISLKGG 1916 + LT V+V+TT SLKGG Sbjct 2725 LKLELTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:1e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:79/155(50%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ + ++ Sbjct 1273 ITPNVCFVKGDIIKVSKRVKAEVVVNPANGHMAHGGGVAKAIAVAAGQQFVKETTDMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++ N D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYALLERVYKHLNKYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 972 Score:63.9 bits(154), Expect:7e-10, Method:Compositional matrix adjust., Identities:39/120(33%), Positives:67/120(55%), Gaps:5/120(4%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C + V+ ++ EF VV +A Sbjct 853 RCVTFKEQPTVNEIASTPKTIKVFYELDKDFNTILNTACGEFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + + +LFD+AGEE L+ ++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNSLFLFDEAGEEVLAPKLYCAFTAPEDDDFLEE 972 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 1565 to 2750 Score:504 bits(1297), Expect:7e-146, Method:Compositional matrix adjust., Identities:358/1232(29%), Positives:592/1232(48%), Gaps:82/1232(6%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + + F QEA+ R+G A F AL+LA G+ D R+ + + +L A Sbjct 1682 SLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K G++AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E +T +P GDVV + Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMD 1190 G KP++W H + N TY +P + VD + + V + D Sbjct 1976 GCITFGKPVIWLSHEKASLNSLTYFNRPLL-----------VDDNKFDVLKVDDVDDSGD 2024 Query 1191 NLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ++ T +++ V+K +V +VI+ K + L D+ Sbjct 2025 SSESGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVI-- 1305 ++ ++ N LS A+ + T+ + S+P + L +KP + + Sbjct 2077 MWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRN 2136 Query 1306 -TSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCL 1364 TS C N++ ++ LLF + K T IA + L Sbjct 2137 KTSACF---------NFIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAF 2183 Query 1365 DVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVREL 1422 K ++ I+ + LL + Y + L +G +P++ + + Sbjct 2184 KNAFLTFKWSMVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQW 2240 Query 1423 YINSSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYK- 1468 N+ ++ T+ +C G C CL+G D LD+Y A++ +Q Sbjct 2241 IKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAF 2300 Query 1469 LDLT-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIV 1525 +D T L + E +++Y L+T +FY L +Q + F+ ++ W ++++ Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALA 2360 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 V ++ L++D+ GQ+ Y+ S FV+ NL + K ++V+V + + +++ Sbjct 2481 DVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKA 2538 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 1824 +ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 1825 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 1884 N + TY K +N+ DLG I +A+H+ VAK VS +W+V + S + +++ Sbjct 2659 NLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKK 2718 Query 1885 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 A K + +LT V+V+TT SLKGG Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:8e-17, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ ++ Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++FN+ D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1036 Score:65.5 bits(158), Expect:2e-10, Method:Compositional matrix adjust., Identities:55/192(29%), Positives:88/192(45%), Gaps:40/192(20%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + +LFD+AGEE + ++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEE 972 Query 119 -------------------------CEDEEETCEHEYGTEDDYKGLPLEFGASTET--PH 151 ++EE+ E T DD G S ET Sbjct 973 SDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDD--------GPSVETSDSQ 1024 Query 152 VEEEEEEEDWLD 163 VEE+ E D++D Sbjct 1025 VEEDVEMSDFVD 1036 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 1565 to 2750 Score:503 bits(1296), Expect:1e-145, Method:Compositional matrix adjust., Identities:358/1232(29%), Positives:591/1232(47%), Gaps:82/1232(6%) Query 721 IKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTL 780 + + TVD N V + ++G+ G + DG +VTK K +N++GK FF D L Sbjct 1565 VDILLTVDGVNFTNRFVPVGESFGKSLGNVFCDGVNVTKHKCDINYKGKVFFQF---DNL 1621 Query 781 RSE---AFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQ 837 SE A D+ L Y + L + KW+ G + K A+NNC+++ L LQ Sbjct 1622 SSEDLKAVRSSFNFDQKELLAYYNMLVNCFKWQVVVNGKYFTFKQANNNCFVNVSCLMLQ 1681 Query 838 QVEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESA 897 + + F QEA+ R+G A F AL+LA G+ D R+ + + +L A Sbjct 1682 SLHLTFKIVQWQEAWLEFRSGRPARFVALVLAKGGFKFGDPADSRDFLRVVFSQVDLTGA 1741 Query 898 KRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSF 957 + CK CG K G++AVM+ GTLS ++L+ G ++ C CG+ + V+ + F Sbjct 1742 ICDFEIACK-CGVKQEQRTGLDAVMHFGTLSREDLEIGYTVDCSCGKKLI-HCVRFDVPF 1799 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S PA KL +G AN + G+ GHY H+ +++ D +++ K+++ G ++ Sbjct 1800 LICSNTPASVKLPKGVG-SANIFIGD-NVGHYVHVKCEQSYQLYDASNVKKVTDVTGKLS 1857 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPN 1075 D Y K T +Y LD V E +P L YY G YYT++ I T + Sbjct 1858 DCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPDLSQYYCDGGKYYTQRIIKAQFKTFEKVD 1917 Query 1076 ASFDNFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTSFKK 1134 + NFKL D LN GF E +T +P GDVV + Y +++ Sbjct 1918 GVYTNFKLI--GHTVCDSLNSKLGFDSSKEFVEYKITEWPTATGDVVLANDDLYVKRYER 1975 Query 1135 GAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGMD 1190 G KP++W H + N TY +P + VD + + V + D Sbjct 1976 GCITFGKPVIWLSHEKASLNSLTYFNRPLL-----------VDDNKFDVLKVDDVDDSGD 2024 Query 1191 NLACESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEGVKVTQELGHEDLMA 1250 + ++ T +++ V+K +V +VI+ K + L D+ Sbjct 2025 SSESGAKETKEINIIKLSGVKKPF--------KVEDSVIVNDDTSETKYVKSLSIVDVYD 2076 Query 1251 AYVEETSITIKKPNELSLALGLKTLA--THGAAAINSVPWSKI-LAYVKPFLGQTAVI-- 1305 ++ ++ N LS A+ + T+ + S+P + L +KP + + Sbjct 2077 MWLTGCKYVVRTANALSRAVNVPTIRKFIKFGMTLVSIPIDLLNLREIKPAVNVVKAVRN 2136 Query 1306 -TSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKNSVKSVAKLCL 1364 TS C N++ ++ LLF + K T IA + L Sbjct 2137 KTSACF---------NFIKWLFVLLFGWIKISADN----KVIYTTEIASKLTCKLVALAF 2183 Query 1365 DVCINYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLG-VCLSSLG-VPSYCDGVREL 1422 K ++ I+ + LL + Y + L +G +P++ + + Sbjct 2184 KNAFLTFKWSMVARGACIIATIFLLWF---NFIYANVIFSDFYLPKIGFLPTFVGKIAQW 2240 Query 1423 YINSSNVTTM-------------DFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL 1469 N+ ++ T+ +C G C CL+G D LD+Y A++ +Q Sbjct 2241 IKNTFSLVTICDLYSIQDVGFKNQYCNGSIACQFCLAGFDMLDNYKAIDVVQYEADRRAF 2300 Query 1470 -DLT-FLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS--WLMWFIISIV 1525 D T L + E +++Y L+T +FY L +Q + F+ ++ W ++++ Sbjct 2301 VDYTGVLKIVIELIVSYALYTAWFYPLFALISIQILTTWLPELFMLSTLHWSFRLLVALA 2360 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 M P +R YI ASF ++ + H+ GC+ S C+ CYKRNR+ RV+C+TIV G+ R Sbjct 2361 NMLPAHVFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIR 2420 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 + V ANGG GFC H WNC++CD++ G+TFI+ E A DLS + KRPI PTD + + V Sbjct 2421 YYDVMANGGTGFCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVT 2480 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 V ++ L++D+ GQ+ Y+ S FV+ NL + K ++V+V + + +++ Sbjct 2481 DVKQVGCSMRLFYDRDGQRIYDDVNASLFVDYSNLLHSKVKSVPNMHVVVVENDA--DKA 2538 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +A+V+Y+Q + +PIL++D+ L++ T V+ MFD YVDTF + F V + L AL Sbjct 2539 NFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNAL 2598 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 1824 +ATAHS + +G + VL TF+S AR+ +D+DVDTK + + + + + +E+T +SCN Sbjct 2599 IATAHSSIKQGTQIYKVLDTFLSCARKSCSIDSDVDTKCLADSVMSAVSAGLELTDESCN 2658 Query 1825 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 1884 N + TY K +N+ DLG I +A+H+ VAK VS +W+V + S + +++ Sbjct 2659 NLVPTYLKSDNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKK 2718 Query 1885 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 A K + +LT V+V+TT SLKGG Sbjct 2719 ACCKTGLKLKLTYNKQMANVSVLTTPFSLKGG 2750 Range 2: 1273 to 1427 Score:86.7 bits(213), Expect:9e-17, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV DI+K ++ K V+VN AN H+ HGGGVA A+ A E+ ++ Sbjct 1273 ITPNVCFVKGDIIKVSKLVKAEVVVNPANGHMVHGGGVAKAIAVAAGQQFVKETTNMVKS 1332 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G G + +G L + L+VVGP+ + LL+R Y++FN+ D ++ L+SA Sbjct 1333 KGVCATGDCYVSTGGKLCKTVLNVVGPDARTQGKQSYVLLERVYKHFNNYDCVVTTLISA 1392 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + + QV L N++ +D I Sbjct 1393 GIFSVPSDVSLTYLLGTAKKQVVLVSNNQEDFDLI 1427 Range 3: 853 to 1036 Score:65.5 bits(158), Expect:2e-10, Method:Compositional matrix adjust., Identities:55/192(29%), Positives:88/192(45%), Gaps:40/192(20%) Query 4 KGVTFGED-TVLEVQGY-KNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEA 61 + VTF E TV E+ K +K+ +ELD + +LN C V+ V+ ++ EF VV +A Sbjct 853 RRVTFKEQPTVKEIISMPKIIKVFYELDNDFNTILNTACGVFEVDDTVDMEEFYAVVIDA 912 Query 62 VVKTLQPVSDLL---TPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEE 118 + + L P +L + L + +LFD+AGEE + ++YC+F P++++ EE Sbjct 913 IEEKLSPCKELEGVGAKVSAFLQKLEDNPLFLFDEAGEEVFAPKLYCAFTAPEDDDFLEE 972 Query 119 -------------------------CEDEEETCEHEYGTEDDYKGLPLEFGASTET--PH 151 ++EE+ E T DD G S ET Sbjct 973 SDVEEDDVEGEETDLTITSAGQPCVASEQEESSEVLEDTLDD--------GPSVETSDSQ 1024 Query 152 VEEEEEEEDWLD 163 VEE+ E D++D Sbjct 1025 VEEDVEMSDFVD 1036 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 1509 to 2783 Score:496 bits(1277), Expect:3e-143, Method:Compositional matrix adjust., Identities:382/1314(29%), Positives:615/1314(46%), Gaps:103/1314(7%) Query 667 SYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDG--EVLPLDKLKSLLSLREVKTIKVF 724 S G RT V++ + +I + G + +G +V + ++++LL+ + V Sbjct 1509 SVDGVRT---VKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLA----NKVDVL 1561 Query 725 TTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTL 780 TVD N + V +G+ G + DG +VTK++ H+GK FF + +D Sbjct 1562 CTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLVA 1621 Query 781 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 840 ++AF + DE L +Y + L KW G + K ++NNCY++ L LQ + Sbjct 1622 VTDAFGF----DEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1676 Query 841 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 900 +KF+ QEA+ R+G F +L+LA + E D + M +L+ A+L A Sbjct 1677 LKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGATCD 1736 Query 901 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 960 VCK CG K KGV+AVM+ GTL +L G +I C CG N + Q F++ Sbjct 1737 FEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCG-NKLVHCTQLNVPFLIC 1794 Query 961 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1020 S P KL + AN +TG GHYTH+ K D +++K+SE KG TD Sbjct 1795 SNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1852 Query 1021 Y-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASF 1078 Y K T + K ++ LD V E P L YY + YYT+ I T + Sbjct 1853 YLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVY 1912 Query 1079 DNFKLTCSNTKFADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAK 1137 NFKL A+ N GF E +T +P GDVV Y + + G Sbjct 1913 TNFKLV--GHSIAEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSGGCV 1970 Query 1138 LVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE-------VLVVEDT 1186 KP++W H + TY +P++ C ++ PVD S + VLV T Sbjct 1971 TFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLV---T 2026 Query 1187 QGMDNLACESQTTTSEEVVENPTVQKEIIE----------CDVKTTEVVG---------N 1227 + A T ++V + +V +++ DVK ++ G + Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 1228 VILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS-- 1285 V++ KV + L D+ ++ + NELS + T+ + + Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREYVKWGMTKIV 2146 Query 1286 VPWSKIL------AYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKST 1339 +P +L +V P + + VI V+ F ++ +T Sbjct 2147 IPAKLVLLRDEKQEFVAPKVVKAKVIAC---YSAVKWFFLYCFSWIKFNTDNKVIYTTEV 2203 Query 1340 NSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMW--LLLLSICLGSL- 1396 S++ +L KN++++ N V F ++W L ++ L Sbjct 2204 ASKLTFNLCCLAFKNALQTFN-------WNVVSRGFFLVATVFLLWFNFLYANVILSDFY 2256 Query 1397 --------TYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGL 1448 T+V ++ ++ G+ + CD LY S FC G C +C SG Sbjct 2257 LPNIGFFPTFVGQIVAWVKTTFGIFTLCD----LYQVSDVGYRSSFCNGSMVCELCFSGF 2312 Query 1449 DSLDSYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFY-LLGLSAIMQAFFG 1505 D LD+Y A+ +Q V D ++ L E ++ Y L+T FY L GL MQ Sbjct 2313 DMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIG-MQLLTT 2371 Query 1506 YFASHFI--SNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCM 1563 + F+ + W F + + M P ++R YI + Y ++ H+M GC+ C+ Sbjct 2372 WLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCL 2431 Query 1564 MCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVA 1623 CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNCLNC F G+TFI+ E A Sbjct 2432 FCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAA 2491 Query 1624 RDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRAN 1683 DLS + KRP+NPTD + Y+V V ++ L++++ GQ+ Y+ S FV+++ L + Sbjct 2492 ADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHS 2551 Query 1684 NTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKM 1743 KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ L++ VS M Sbjct 2552 KVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTM 2609 Query 1744 FDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTK 1802 FD YVD+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+TK Sbjct 2610 FDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETK 2669 Query 1803 DVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNV 1862 + + + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ NV Sbjct 2670 SITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANV 2729 Query 1863 SLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 + +W+V + LS L+ ++R A K + +LT V ++TT SLKGG Sbjct 2730 ACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG 2783 Range 2: 834 to 1013 Score:69.3 bits(168), Expect:1e-11, Method:Compositional matrix adjust., Identities:57/183(31%), Positives:87/183(47%), Gaps:11/183(6%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V E+ + +KI F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVEFNDKPKVKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEC 119 TL P + + T + L+ + YLFD+ GEE ++ +MYCSF PD +EDC Sbjct 894 ESTLSPCKEHDVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPD-DEDCVA- 951 Query 120 EDEEETCEHEYGTEDDYKGLPL----EFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPL 175 D + E++ DD L E G + V E + D + +A + E +P+ Sbjct 952 ADVVDADENQGDDADDSAALVTDTQEEDGVAKGQVGVAESDARLDQV-EAFDIEKVEDPI 1010 Query 176 PEE 178 E Sbjct 1011 LNE 1013 Range 3: 1267 to 1421 Score:61.2 bits(147), Expect:4e-09, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV D++K + VIVN AN + HG GVAGA+ KA + E+ + ++ Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G VG +G NL + L++VGP+ + + L+RAY++ N D ++ L+SA Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISA 1386 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + +V V L N+K +D I Sbjct 1387 GIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVI 1421 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 1509 to 2783 Score:496 bits(1276), Expect:3e-143, Method:Compositional matrix adjust., Identities:382/1314(29%), Positives:615/1314(46%), Gaps:103/1314(7%) Query 667 SYSGQRTELGVEFLKRGDKIVYHTTGSPIEFHLDG--EVLPLDKLKSLLSLREVKTIKVF 724 S G RT V++ + +I + G + +G +V + ++++LL+ + V Sbjct 1509 SVDGVRT---VKYFECPGEIFVSSQGKKFGYVQNGSFKVASVSQIRALLA----NKVDVL 1561 Query 725 TTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTL 780 TVD N + V +G+ G + DG +VTK++ H+GK FF + +D Sbjct 1562 CTVDGVNFRSCCVAEGEVFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLVA 1621 Query 781 RSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVE 840 ++AF + DE L +Y + L KW G + K ++NNCY++ L LQ + Sbjct 1622 VTDAFGF----DEPQLLKYYNMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLS 1676 Query 841 VKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRV 900 +KF+ QEA+ R+G F +L+LA + E D + M +L+ A+L A Sbjct 1677 LKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGATCD 1736 Query 901 LNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMM 960 VCK CG K KGV+AVM+ GTL +L G +I C CG N + Q F++ Sbjct 1737 FEFVCK-CGVKQEQRKGVDAVMHFGTLDKGDLAKGYTIACTCG-NKLVHCTQLNVPFLIC 1794 Query 961 SAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVF 1020 S P KL + AN +TG GHYTH+ K D +++K+SE KG TD Sbjct 1795 SNKPEGKKLPDDV-VAANIFTGG-SLGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCL 1852 Query 1021 Y-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASF 1078 Y K T + K ++ LD V E P L YY + YYT+ I T + Sbjct 1853 YLKNLKQTFSSKLTTFYLDDVKCVEYNPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVY 1912 Query 1079 DNFKLTCSNTKFADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAK 1137 NFKL A+ N GF E +T +P GDVV Y + + G Sbjct 1913 TNFKLV--GHSIAEKFNAKLGFDCNSPFTEYKITEWPTATGDVVLASDDLYVSRYSGGCV 1970 Query 1138 LVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE-------VLVVEDT 1186 KP++W H + TY +P++ C ++ PVD S + VLV T Sbjct 1971 TFGKPVIWLGHEEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLV---T 2026 Query 1187 QGMDNLACESQTTTSEEVVENPTVQKEIIE----------CDVKTTEVVG---------N 1227 + A T ++V + +V +++ DVK ++ G + Sbjct 2027 GALSGAATAPGTAKEQKVCASDSVVDQVVSGFLSDLSGATVDVKEVKLNGVKKPIKVEDS 2086 Query 1228 VILKPSEEGVKVTQELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS-- 1285 V++ KV + L D+ ++ + NELS + T+ + + Sbjct 2087 VVVNDPTSETKVVKSLSIVDVYDMFLTGCRYVVWMANELSRLVNSPTVREYVKWGMTKIV 2146 Query 1286 VPWSKIL------AYVKPFLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKST 1339 +P +L +V P + + VI V+ F ++ +T Sbjct 2147 IPAKLVLLRDEKQEFVAPKVVKAKVIAC---YSAVKWFFLYCFSWIKFNTDNKVIYTTEV 2203 Query 1340 NSRIKASLPTTIAKNSVKSVAKLCLDVCINYVKSPKFSKLFTIVMW--LLLLSICLGSL- 1396 S++ +L KN++++ N V F ++W L ++ L Sbjct 2204 ASKLTFNLCCLAFKNALQTFN-------WNVVSRGFFLVATVFLLWFNFLYANVILSDFY 2256 Query 1397 --------TYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGL 1448 T+V ++ ++ G+ + CD LY S FC G C +C SG Sbjct 2257 LPNIGFFPTFVGQIVAWVKTTFGIFTLCD----LYQVSDVGYRSSFCNGSMVCELCFSGF 2312 Query 1449 DSLDSYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFY-LLGLSAIMQAFFG 1505 D LD+Y A+ +Q V D ++ L E ++ Y L+T FY L GL MQ Sbjct 2313 DMLDNYDAINVVQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFGLIG-MQLLTT 2371 Query 1506 YFASHFI--SNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCM 1563 + F+ + W F + + M P ++R YI + Y ++ H+M GC+ C+ Sbjct 2372 WLPEFFMLETMHWSARFFVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCL 2431 Query 1564 MCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVA 1623 CYKRNR+ RV+C+T+V G R + V ANGG GFC H WNCLNC F G+TFI+ E A Sbjct 2432 FCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTGFCAKHQWNCLNCSAFGPGNTFITHEAA 2491 Query 1624 RDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRAN 1683 DLS + KRP+NPTD + Y+V V ++ L++++ GQ+ Y+ S FV+++ L + Sbjct 2492 ADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHS 2551 Query 1684 NTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKM 1743 KG +V+V + ++ +++ +A+V+Y+Q + +P+LL+++ L++ VS M Sbjct 2552 KVKGVPETHVVVVENEA--DKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTM 2609 Query 1744 FDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTK 1802 FD YVD+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+TK Sbjct 2610 FDLYVDSLLGVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETK 2669 Query 1803 DVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNV 1862 + + + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ NV Sbjct 2670 SITKSIMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANV 2729 Query 1863 SLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 + +W+V + LS L+ ++R A K + +LT V ++TT SLKGG Sbjct 2730 ACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG 2783 Range 2: 844 to 1013 Score:69.3 bits(168), Expect:1e-11, Method:Compositional matrix adjust., Identities:54/173(31%), Positives:83/173(47%), Gaps:10/173(5%) Query 13 VLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD- 71 V E+ + +KI F LD D VL++ CS + V+ + E VV +AV TL P + Sbjct 844 VKEIPSTRKIKINFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEH 903 Query 72 --LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEECEDEEETCEHE 129 + T + L+ + YLFD+ GEE ++ +MYCSF PD +EDC D + E++ Sbjct 904 DVIGTKVCALLNRLAEDYVYLFDEGGEEVIAPKMYCSFSAPD-DEDCVA-ADVVDADENQ 961 Query 130 YGTEDDYKGLPL----EFGASTETPHVEEEEEEEDWLDDAIEAEPEPEPLPEE 178 DD L E G + V E + D + +A + E +P+ E Sbjct 962 GDDADDSAALVTDTQEEDGVAKGQVGVAESDARLDQV-EAFDIEKVEDPILNE 1013 Range 3: 1267 to 1421 Score:61.2 bits(147), Expect:5e-09, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:80/155(51%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV D++K + VIVN AN + HG GVAGA+ KA + E+ + ++ Sbjct 1267 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKSFIKETADMVKN 1326 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G VG +G NL + L++VGP+ + + L+RAY++ N D ++ L+SA Sbjct 1327 QGVCQVGECYESTGGNLCKTVLNIVGPDARGHGKQCYSFLERAYQHINKCDDVVTTLISA 1386 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + +V V L N+K +D I Sbjct 1387 GIFSVPTDVSLTYLIGVVTKNVILVSNNKDDFDVI 1421 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 1577 to 2837 Score:486 bits(1252), Expect:3e-140, Method:Compositional matrix adjust., Identities:386/1309(29%), Positives:613/1309(46%), Gaps:116/1309(8%) Query 676 GVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTH 735 G+ +G K Y GS E + ++++LL+ + V TVD N + Sbjct 1577 GIFVSSQGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSC 1625 Query 736 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTLRSEAFEYYHTI 791 V +G+ G + DG +VTK++ ++GK FF + +D +AF + Sbjct 1626 CVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF---- 1681 Query 792 DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEA 851 DE L +Y + L KW G + K ++NNCY++ L LQ + +KF QEA Sbjct 1682 DEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEA 1740 Query 852 YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQK 911 + R+G F +L+LA + E D + M +L+ A+L A L VCK CG K Sbjct 1741 WNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCNLEFVCK-CGVK 1799 Query 912 TTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQ 971 KGV+AVM+ GTL +L G +I C CG + Q F++ S P KL Sbjct 1800 QEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLICSNTPEGRKLPD 1858 Query 972 GAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAI 1030 + AN +TG GHYTH+ K D ++ K+SE KG TD Y K T + Sbjct 1859 DV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSS 1916 Query 1031 KPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTK 1089 ++ LD V E +P L YY + YYT+ I T + + NFKL Sbjct 1917 VLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLV--GHS 1974 Query 1090 FADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--H 1146 A+ LN GF E +T +P GDVV Y + + G KP++W H Sbjct 1975 IAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGH 2034 Query 1147 INQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE------VLVVEDTQGMD-------- 1190 + TY +P++ C ++ PVD S + ++V G D Sbjct 2035 EEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIA 2093 Query 1191 --NLACESQTTTSE---EVVENPTVQ----KEIIECDVKT-TEVVGNVILKPSEEGVKVT 1240 AC S + + EV + P+V KE+ VK +V G+V++ KV Sbjct 2094 KEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVV 2153 Query 1241 QELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSV--PWSKIL------ 1292 + L D+ ++ + NELS + T+ + + + P +L Sbjct 2154 KSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQ 2213 Query 1293 AYVKPFLGQTAVITSNCIKK-----CVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASL 1347 +V P + + I C K C + N VI +T S++ L Sbjct 2214 EFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVI--------YTTEVASKLTFKL 2265 Query 1348 PTTIAKNSVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMW--LLLLSICLGSL------- 1396 KN++++ N+ V S F + T+ ++W L ++ L Sbjct 2266 CCLAFKNALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGP 2316 Query 1397 --TYVTAVLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLD 1452 T+V ++ ++ GV + CD V +L SS FC G C +C SG D LD Sbjct 2317 LPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLD 2370 Query 1453 SYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASH 1510 +Y A+ +Q V D ++ L E ++ Y L+T FY L + MQ + Sbjct 2371 NYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEF 2430 Query 1511 FI--SNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKR 1568 F+ + W + + M P ++R YI + Y V+ H+M GC+ C+ CYKR Sbjct 2431 FMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKR 2490 Query 1569 NRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSL 1628 NR+ RV+C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS Sbjct 2491 NRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSK 2550 Query 1629 QFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGS 1688 + KRP+NPTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG Sbjct 2551 ELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGV 2610 Query 1689 LPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYV 1748 +V+V + ++ +++ A+V+Y+Q + +P+L++++ L++ VS MFD YV Sbjct 2611 PETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYV 2668 Query 1749 DTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIEC 1807 D+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+TK + + Sbjct 2669 DSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKS 2728 Query 1808 LKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWN 1867 + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ NV+ +W+ Sbjct 2729 VMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWS 2788 Query 1868 VKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 V + LS L+ ++R A K + +LT V ++TT SLKGG Sbjct 2789 VDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG 2837 Range 2: 1320 to 1474 Score:83.6 bits(205), Expect:8e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:80/155(51%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV D++K + VIVN AN + HG GVAGA+ + A E+ + ++ Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G VG +G L +K L++VGP+ + + LL+RAY++ N D ++ L+SA Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISA 1439 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + +V V L N++ +D I Sbjct 1440 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1474 Range 3: 844 to 964 Score:70.9 bits(172), Expect:5e-12, Method:Compositional matrix adjust., Identities:42/121(35%), Positives:66/121(54%), Gaps:10/121(8%) Query 13 VLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSD- 71 V ++ + +KITF LD D VL++ CS + V+ + E VV +AV TL P + Sbjct 844 VRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAVESTLSPCKEH 903 Query 72 --LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE-------DCEECEDE 122 + T + LD + YLFD+ G+E ++ RMYCSF PD+E+ D +E +D+ Sbjct 904 DVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAADVVDADENQDD 963 Query 123 E 123 + Sbjct 964 D 964 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 1577 to 2837 Score:486 bits(1250), Expect:7e-140, Method:Compositional matrix adjust., Identities:386/1309(29%), Positives:613/1309(46%), Gaps:116/1309(8%) Query 676 GVEFLKRGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTH 735 G+ +G K Y GS E + ++++LL+ + V TVD N + Sbjct 1577 GIFVSSQGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSC 1625 Query 736 IVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFF----VLPSDDTLRSEAFEYYHTI 791 V +G+ G + DG +VTK++ ++GK FF + +D +AF + Sbjct 1626 CVAEGEVFGKTLGSVFCDGINVTKVRCSAIYKGKVFFQYSDLSEADLVAVKDAFGF---- 1681 Query 792 DESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEA 851 DE L +Y + L KW G + K ++NNCY++ L LQ + +KF QEA Sbjct 1682 DEPQLLKYYTMLGMC-KWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEA 1740 Query 852 YYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQK 911 + R+G F +L+LA + E D + M +L+ A+L A L VCK CG K Sbjct 1741 WNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGATCNLEFVCK-CGVK 1799 Query 912 TTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQ 971 KGV+AVM+ GTL +L G +I C CG + Q F++ S P KL Sbjct 1800 QEQRKGVDAVMHFGTLDKGDLVRGYNIACTCGSKLV-HCTQFNVPFLICSNTPEGRKLPD 1858 Query 972 GAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAI 1030 + AN +TG GHYTH+ K D ++ K+SE KG TD Y K T + Sbjct 1859 DV-VAANIFTGG-SVGHYTHVKCKPKYQLYDACNVNKVSEAKGNFTDCLYLKNLKQTFSS 1916 Query 1031 KPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTK 1089 ++ LD V E +P L YY + YYT+ I T + + NFKL Sbjct 1917 VLTTFYLDDVKCVEYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVDGVYTNFKLV--GHS 1974 Query 1090 FADDLNQMTGFK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--H 1146 A+ LN GF E +T +P GDVV Y + + G KP++W H Sbjct 1975 IAEKLNAKLGFDCNSPFVEYKITEWPTATGDVVLASDDLYVSRYSSGCITFGKPVVWLGH 2034 Query 1147 INQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFE------VLVVEDTQGMD-------- 1190 + TY +P++ C ++ PVD S + ++V G D Sbjct 2035 EEASLKSLTYFNRPSVVCEN-KFNVLPVDVSEPTDKGPVPAAVLVTGVPGADASAGAGIA 2093 Query 1191 --NLACESQTTTSE---EVVENPTVQ----KEIIECDVKT-TEVVGNVILKPSEEGVKVT 1240 AC S + + EV + P+V KE+ VK +V G+V++ KV Sbjct 2094 KEQKACASASVEDQVVTEVRQEPSVSAADVKEVKLNGVKKPVKVEGSVVVNDPTSETKVV 2153 Query 1241 QELGHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSV--PWSKIL------ 1292 + L D+ ++ + NELS + T+ + + + P +L Sbjct 2154 KSLSIVDVYDMFLTGCKYVVWTANELSRLVNSPTVREYVKWGMGKIVTPAKLLLLRDEKQ 2213 Query 1293 AYVKPFLGQTAVITSNCIKK-----CVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASL 1347 +V P + + I C K C + N VI +T S++ L Sbjct 2214 EFVAPKVVKAKAIACYCAVKWFLLYCFSWIKFNTDNKVI--------YTTEVASKLTFKL 2265 Query 1348 PTTIAKNSVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMW--LLLLSICLGSL------- 1396 KN++++ N+ V S F + T+ ++W L ++ L Sbjct 2266 CCLAFKNALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGP 2316 Query 1397 --TYVTAVLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLD 1452 T+V ++ ++ GV + CD V +L SS FC G C +C SG D LD Sbjct 2317 LPTFVGQIVAWFKTTFGVSTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLD 2370 Query 1453 SYPALETIQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASH 1510 +Y A+ +Q V D ++ L E ++ Y L+T FY L + MQ + Sbjct 2371 NYDAINVVQHVVDRRLSFDYISLFKLVVELVIGYSLYTVCFYPLFVLIGMQLLTTWLPEF 2430 Query 1511 FI--SNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKR 1568 F+ + W + + M P ++R YI + Y V+ H+M GC+ C+ CYKR Sbjct 2431 FMLETMHWSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKR 2490 Query 1569 NRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSL 1628 NR+ RV+C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS Sbjct 2491 NRSVRVKCSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSK 2550 Query 1629 QFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGS 1688 + KRP+NPTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG Sbjct 2551 ELKRPVNPTDSAYYSVTEVKQVGCSMRLFYERDGQRVYDDVNASLFVDMNGLLHSKVKGV 2610 Query 1689 LPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYV 1748 +V+V + ++ +++ A+V+Y+Q + +P+L++++ L++ VS MFD YV Sbjct 2611 PETHVVVVENEA--DKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYV 2668 Query 1749 DTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIEC 1807 D+ V + L + V AH+ L +GV L+ V+ TF+ AR+ +D+DV+TK + + Sbjct 2669 DSLLNVLDVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFIGCARRKCAIDSDVETKSITKS 2728 Query 1808 LKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWN 1867 + + ++ ++ T +SCNN + TY K + + DLG I NA+H+ A VAK+ NV+ +W+ Sbjct 2729 VMSAVNAGVDFTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQANVAKAANVACIWS 2788 Query 1868 VKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 V + LS L+ ++R A K + +LT V ++TT SLKGG Sbjct 2789 VDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQEANVPILTTPFSLKGG 2837 Range 2: 1320 to 1474 Score:83.6 bits(205), Expect:8e-16, Method:Compositional matrix adjust., Identities:51/155(33%), Positives:80/155(51%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV D++K + VIVN AN + HG GVAGA+ + A E+ + ++ Sbjct 1320 ITPNVCFVKGDVIKVVRLVNAEVIVNPANGRMAHGAGVAGAIAEKAGSAFIKETSDMVKA 1379 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G VG +G L +K L++VGP+ + + LL+RAY++ N D ++ L+SA Sbjct 1380 QGVCQVGECYESAGGKLCKKVLNIVGPDARGHGKQCYSLLERAYQHINKCDNVVTTLISA 1439 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + +V V L N++ +D I Sbjct 1440 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1474 Range 3: 834 to 964 Score:71.2 bits(173), Expect:5e-12, Method:Compositional matrix adjust., Identities:45/131(34%), Positives:70/131(53%), Gaps:11/131(8%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V ++ + +KITF LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVEFNDKPKVRKIPSTRKIKITFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE----- 114 TL P + + T + LD + YLFD+ G+E ++ RMYCSF PD+E+ Sbjct 894 ESTLSPCKEHDVIGTKVCALLDRLAGDYVYLFDEGGDEVIAPRMYCSFSAPDDEDCVAAD 953 Query 115 --DCEECEDEE 123 D +E +D++ Sbjct 954 VVDADENQDDD 964 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1620 to 2808 Score:476 bits(1225), Expect:6e-137, Method:Compositional matrix adjust., Identities:368/1232(30%), Positives:572/1232(46%), Gaps:77/1232(6%) Query 719 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 778 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 779 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 839 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 898 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 899 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 957 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1855 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1076 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1970 Query 1077 SFD----NFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTS 1131 D NFKL LN GF E VT +P GDVV Y Sbjct 1971 KVDGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2028 Query 1132 FKKGAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 1187 + KG + KP++W H + N TY KP+ + N + VL V Sbjct 2029 YFKGCETFGKPVIWLCHDEASLNSLTYFNKPSF------------KSENRYSVLSV---- 2072 Query 1188 GMDNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHE 1246 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L Sbjct 2073 --DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLV 2130 Query 1247 DLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVIT 1306 D+ Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2131 DVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVP 2189 Query 1307 SNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTT-IAKNSVKSVAKLCLD 1365 I K F ++ ++ +F L FT K TT IA ++ L L Sbjct 2190 K--IFKARAIEFYGFLKWLFIYVFSLLHFTND-----KTIFYTTEIASKFTFNLFCLALK 2242 Query 1366 VCINYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSS 1409 + F K F +V W L +++ +V ++ ++ Sbjct 2243 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2302 Query 1410 LGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL 1469 G+ + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2303 FGLVTICDFYSKLGVG----FTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVL 2358 Query 1470 D--LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIV 1525 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + Sbjct 2359 FDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVA 2418 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 M P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R Sbjct 2419 NMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIR 2478 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV Sbjct 2479 YYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVT 2538 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2539 DIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRA 2596 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + Sbjct 2597 NFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNF 2656 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 1824 V AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ N Sbjct 2657 VNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYN 2716 Query 1825 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 1884 N + TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ Sbjct 2717 NLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKK 2776 Query 1885 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 A K + +LT V ++TT SLKGG Sbjct 2777 ACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Range 2: 1328 to 1484 Score:91.7 bits(226), Expect:3e-18, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 187 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 246 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 247 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 304 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 305 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 SAGIF SL + +V QV L N+K +D I Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1484 Range 3: 811 to 925 Score:68.9 bits(167), Expect:2e-11, Method:Compositional matrix adjust., Identities:40/115(35%), Positives:62/115(53%), Gaps:4/115(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE 114 L D + + L++ + YLFD+AG+E ++SRMYC+F D E+ Sbjct 871 ENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1620 to 2808 Score:476 bits(1226), Expect:7e-137, Method:Compositional matrix adjust., Identities:366/1230(30%), Positives:571/1230(46%), Gaps:73/1230(5%) Query 719 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 778 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1620 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1679 Query 779 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1680 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1738 Query 839 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 898 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1739 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1798 Query 899 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 957 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1799 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1855 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1856 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1913 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1076 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1914 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1970 Query 1077 SFD----NFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTS 1131 D NFKL LN GF E VT +P GDVV Y Sbjct 1971 KVDGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2028 Query 1132 FKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGM 1189 + KG + KP++W H + N TY ++ + N + VL V Sbjct 2029 YFKGCETFGKPVIWLCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------ 2072 Query 1190 DNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHEDL 1248 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L D+ Sbjct 2073 DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDV 2132 Query 1249 MAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSN 1308 Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2133 WDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPK- 2190 Query 1309 CIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTT-IAKNSVKSVAKLCLDVC 1367 I K F ++ ++ +F L FT K TT IA ++ L L Sbjct 2191 -IFKARAIEFYGFLKWLFIYVFSLLHFTND-----KTIFYTTEIASKFTFNLFCLALKNA 2244 Query 1368 INYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSLG 1411 + F K F +V W L +++ +V ++ ++ G Sbjct 2245 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2304 Query 1412 VPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL-- 1469 + + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2305 LVTICDFYSKLGVG----FTSHFCNGSFICELCYSGFDMLDTYAAIDFVQYEVDRRVLFD 2360 Query 1470 DLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIVQM 1527 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + M Sbjct 2361 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2420 Query 1528 APVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSF 1587 P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R + Sbjct 2421 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2480 Query 1588 YVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSV 1647 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV + Sbjct 2481 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2540 Query 1648 TVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAA 1707 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2541 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANF 2598 Query 1708 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1767 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2599 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2658 Query 1768 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNF 1826 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN Sbjct 2659 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2718 Query 1827 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAA 1886 + TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ A Sbjct 2719 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKAC 2778 Query 1887 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 K + +LT V ++TT SLKGG Sbjct 2779 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2808 Range 2: 1328 to 1484 Score:91.7 bits(226), Expect:3e-18, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 187 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 246 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1328 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1387 Query 247 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 304 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1388 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1447 Query 305 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 SAGIF SL + +V QV L N+K +D I Sbjct 1448 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1484 Range 3: 811 to 925 Score:69.3 bits(168), Expect:2e-11, Method:Compositional matrix adjust., Identities:40/115(35%), Positives:62/115(53%), Gaps:4/115(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE 114 L D + + L++ + YLFD+AG+E ++SRMYC+F D E+ Sbjct 871 ENALNSCKDHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1650 to 2838 Score:476 bits(1224), Expect:1e-136, Method:Compositional matrix adjust., Identities:366/1230(30%), Positives:571/1230(46%), Gaps:73/1230(5%) Query 719 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 778 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 779 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 839 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 898 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 899 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 957 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1885 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1076 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 2000 Query 1077 SFD----NFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTS 1131 D NFKL LN GF E VT +P GDVV Y Sbjct 2001 KVDGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2058 Query 1132 FKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGM 1189 + KG + KP++W H + N TY ++ + N + VL V Sbjct 2059 YFKGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------ 2102 Query 1190 DNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHEDL 1248 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L D+ Sbjct 2103 DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDV 2162 Query 1249 MAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSN 1308 Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2163 WDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPK- 2220 Query 1309 CIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTT-IAKNSVKSVAKLCLDVC 1367 I K F ++ ++ +F L FT K TT IA ++ L L Sbjct 2221 -IFKARAIEFYGFLKWLFIYVFSLLHFTND-----KTIFYTTEIASKFTFNLFCLALKNA 2274 Query 1368 INYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSLG 1411 + F K F +V W L +++ +V ++ ++ G Sbjct 2275 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2334 Query 1412 VPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL-- 1469 + + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2335 LVTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2390 Query 1470 DLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIVQM 1527 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + M Sbjct 2391 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2450 Query 1528 APVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSF 1587 P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R + Sbjct 2451 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2510 Query 1588 YVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSV 1647 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV + Sbjct 2511 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2570 Query 1648 TVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAA 1707 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2571 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANF 2628 Query 1708 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1767 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2629 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNFVN 2688 Query 1768 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNF 1826 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN Sbjct 2689 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2748 Query 1827 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAA 1886 + TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ A Sbjct 2749 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKKAC 2808 Query 1887 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 K + +LT V ++TT SLKGG Sbjct 2809 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Range 2: 1358 to 1514 Score:91.7 bits(226), Expect:3e-18, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 187 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 246 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 247 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 304 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 305 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 SAGIF SL + +V QV L N+K +D I Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1514 Range 3: 811 to 925 Score:67.4 bits(163), Expect:6e-11, Method:Compositional matrix adjust., Identities:39/115(34%), Positives:62/115(53%), Gaps:4/115(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE 114 L + + + L++ + YLFD+AG+E ++SRMYC+F D E+ Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1650 to 2838 Score:475 bits(1223), Expect:1e-136, Method:Compositional matrix adjust., Identities:368/1232(30%), Positives:572/1232(46%), Gaps:77/1232(6%) Query 719 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 778 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1650 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1709 Query 779 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1710 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1768 Query 839 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 898 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1769 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1828 Query 899 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 957 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1829 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1885 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1886 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1943 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1076 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1944 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 2000 Query 1077 SFD----NFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTS 1131 D NFKL LN GF E VT +P GDVV Y Sbjct 2001 KVDGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2058 Query 1132 FKKGAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 1187 + KG + KP++W H + N TY KP+ + N + VL V Sbjct 2059 YFKGCETFGKPVIWFCHDEASLNSLTYFNKPSF------------KSENRYSVLSV---- 2102 Query 1188 GMDNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHE 1246 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L Sbjct 2103 --DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLV 2160 Query 1247 DLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVIT 1306 D+ Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2161 DVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVP 2219 Query 1307 SNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTT-IAKNSVKSVAKLCLD 1365 I K F ++ ++ +F L FT K TT IA ++ L L Sbjct 2220 K--IFKARAIEFYGFLKWLFIYVFSLLHFTND-----KTIFYTTEIASKFTFNLFCLALK 2272 Query 1366 VCINYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSS 1409 + F K F +V W L +++ +V ++ ++ Sbjct 2273 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2332 Query 1410 LGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL 1469 G+ + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2333 FGLVTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2388 Query 1470 D--LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIV 1525 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + Sbjct 2389 FDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVA 2448 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 M P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R Sbjct 2449 NMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIR 2508 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV Sbjct 2509 YYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVT 2568 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2569 DIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRA 2626 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + Sbjct 2627 NFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNNF 2686 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 1824 V AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ N Sbjct 2687 VNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYN 2746 Query 1825 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 1884 N + TY K +N+ DLG I A+H+ VAK+ N+S +W + + L+ L+ +++ Sbjct 2747 NLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDAFNQLTADLQHKLKK 2806 Query 1885 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 A K + +LT V ++TT SLKGG Sbjct 2807 ACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2838 Range 2: 1358 to 1514 Score:91.7 bits(226), Expect:3e-18, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 187 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 246 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1358 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1417 Query 247 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 304 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1418 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1477 Query 305 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 SAGIF SL + +V QV L N+K +D I Sbjct 1478 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1514 Range 3: 811 to 925 Score:67.0 bits(162), Expect:8e-11, Method:Compositional matrix adjust., Identities:39/115(34%), Positives:62/115(53%), Gaps:4/115(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE 114 L + + + L++ + YLFD+AG+E ++SRMYC+F D E+ Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 1582 to 2840 Score:474 bits(1221), Expect:2e-136, Method:Compositional matrix adjust., Identities:376/1302(29%), Positives:599/1302(46%), Gaps:110/1302(8%) Query 682 RGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSM 741 +G K Y GS E + ++++LL+ + V TVD N + V Sbjct 1582 QGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGE 1630 Query 742 TYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMS 801 +G+ G + DG +VTK++ H+GK FF A + DE L +Y S Sbjct 1631 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYS 1690 Query 802 ALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAA 861 L K W G + K ++NNCY++ L LQ + +KF + R+G Sbjct 1691 MLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPL 1749 Query 862 NFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAV 921 F +L+LA + E D + + L+ A+L A L +CK CG K KGV+AV Sbjct 1750 RFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDLEFICK-CGVKQEQRKGVDAV 1808 Query 922 MYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYT 981 M+ GTL L G +I C CG + + Q F++ S P KL + AN +T Sbjct 1809 MHFGTLDKSGLVKGYNIACTCG-DKLVHCTQFNVPFLICSNTPEGKKLPDDV-VAANIFT 1866 Query 982 GNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAIKPVSYKLDGV 1040 G GHYTH+ K D +++K+SE KG TD Y K T + +Y LD V Sbjct 1867 GG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDV 1925 Query 1041 TYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTKFADDLNQMTG 1099 +P L YY + YYT+ I T + NFKL A+ LN G Sbjct 1926 KCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV--GHDIAEKLNAKLG 1983 Query 1100 FK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--HINQTTNKTTY 1156 F E +T +P GDVV Y + + G KP++W H + TY Sbjct 1984 FDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTY 2043 Query 1157 --KPNIWCLRCLWSTKPVDTSNSFE-------VLVV-------------EDTQGMDNLAC 1194 +P++ C ++ PVD S + VLV E + AC Sbjct 2044 FNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKAC 2102 Query 1195 ESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEG-----------VKVTQEL 1243 S + + V+E QK+ V EV N + KP + KV + L Sbjct 2103 ASDSVEDQIVME---AQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSL 2159 Query 1244 GHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS--VPWSKIL------AYV 1295 D+ ++ + NELS + T+ + ++ +P + +L +V Sbjct 2160 SIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFV 2219 Query 1296 KP-FLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKN 1354 P + A+ +K + FS ++ +T S++ L KN Sbjct 2220 APKVVKAKAIACYGAVKWFLLYCFS----WIKFNTDNKVIYTTEVASKLTFKLCCLAFKN 2275 Query 1355 SVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMWL--LLLSICLGSL---------TYVTA 1401 ++++ N+ V S F + T+ ++W L ++ L +V Sbjct 2276 ALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQ 2326 Query 1402 VLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALET 1459 ++ ++ GV + CD V +L SS FC G C +C SG D LD+Y ++ Sbjct 2327 IVAWVKTTFGVLTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLDNYESINV 2380 Query 1460 IQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS-- 1515 +Q V D ++ L E ++ Y L+T FY L + MQ + F+ + Sbjct 2381 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMH 2440 Query 1516 WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVE 1575 W + + M P ++R YI + Y V+ H+M GC+ C+ CYKRNR+ RV+ Sbjct 2441 WSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVK 2500 Query 1576 CTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPIN 1635 C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS + KRP+N Sbjct 2501 CSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVN 2560 Query 1636 PTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 1695 PTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG +V+V Sbjct 2561 PTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVV 2620 Query 1696 FDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 1755 + ++ +++ +A+V+Y+Q + +P+L++++ L++ VS MFD YV + Sbjct 2621 VENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHL 2678 Query 1756 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHS 1814 V + L + V AH+ L +GV L+ V+ TFV AR+ +D+DV+TK + + + + ++ Sbjct 2679 DVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNA 2738 Query 1815 DIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSL 1874 +EVT +SCNN + TY K + + DLG I NA+H+ + VAK+ NV+ +W+V + L Sbjct 2739 GVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQL 2798 Query 1875 SEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 S L+ ++R A K + +LT V ++TT SLKGG Sbjct 2799 SADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG 2840 Range 2: 834 to 947 Score:69.7 bits(169), Expect:1e-11, Method:Compositional matrix adjust., Identities:44/114(39%), Positives:61/114(53%), Gaps:4/114(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V EV + +KI F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEE 113 TL P + + T + L+ YLFD+ GEE ++SRMYCSF PDE+ Sbjct 894 ESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Range 3: 1319 to 1473 Score:67.0 bits(162), Expect:7e-11, Method:Compositional matrix adjust., Identities:56/155(36%), Positives:83/155(53%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV D++K + VIVN AN + HG GVAGA+ KA A NE+ + ++ Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G VGG +G L +K L++VGP+ + E LL+RAY++ N D ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + +V V L N++ +D I Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1473 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 1582 to 2840 Score:474 bits(1220), Expect:3e-136, Method:Compositional matrix adjust., Identities:376/1302(29%), Positives:599/1302(46%), Gaps:110/1302(8%) Query 682 RGDKIVYHTTGSPIEFHLDGEVLPLDKLKSLLSLREVKTIKVFTTVDNTNLHTHIVDMSM 741 +G K Y GS E + ++++LL+ + V TVD N + V Sbjct 1582 QGKKFGYVQNGSFKE-------ASVSQIRALLA----NKVDVLCTVDGVNFRSCCVAEGE 1630 Query 742 TYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTIDESFLGRYMS 801 +G+ G + DG +VTK++ H+GK FF A + DE L +Y S Sbjct 1631 VFGKTLGSVFCDGINVTKVRCSAIHKGKVFFQYSGLSAADLAAVKDAFGFDEPQLLQYYS 1690 Query 802 ALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQVEVKFNAPALQEAYYRARAGDAA 861 L K W G + K ++NNCY++ L LQ + +KF + R+G Sbjct 1691 MLGMCK-WPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPL 1749 Query 862 NFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLKGVEAV 921 F +L+LA + E D + + L+ A+L A L +CK CG K KGV+AV Sbjct 1750 RFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGATCDLEFICK-CGVKQEQRKGVDAV 1808 Query 922 MYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESSFVMMSAPPAEYKLQQGAFLCANEYT 981 M+ GTL L G +I C CG + + Q F++ S P KL + AN +T Sbjct 1809 MHFGTLDKSGLVKGYNIACTCG-DKLVHCTQFNVPFLICSNTPEGKKLPDDV-VAANIFT 1866 Query 982 GNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVTDVFY-KETSYTTAIKPVSYKLDGV 1040 G GHYTH+ K D +++K+SE KG TD Y K T + +Y LD V Sbjct 1867 GG-SVGHYTHVKCKPKYQLYDACNVSKVSEAKGNFTDCLYLKNLKQTFSSVLTTYYLDDV 1925 Query 1041 TYTEIEPKLDGYYKKGNAYYTEQPIDL-VPTQPMPNASFDNFKLTCSNTKFADDLNQMTG 1099 +P L YY + YYT+ I T + NFKL A+ LN G Sbjct 1926 KCVAYKPDLSQYYCESGKYYTKPIIKAQFRTFEKVEGVYTNFKLV--GHDIAEKLNAKLG 1983 Query 1100 FK-KPASRELTVTFFPDLNGDVVAIDYRHYSTSFKKGAKLVHKPILW--HINQTTNKTTY 1156 F E +T +P GDVV Y + + G KP++W H + TY Sbjct 1984 FDCNSPFMEYKITEWPTATGDVVLASDDLYVSRYSGGCVTFGKPVIWRGHEEASLKSLTY 2043 Query 1157 --KPNIWCLRCLWSTKPVDTSNSFE-------VLVV-------------EDTQGMDNLAC 1194 +P++ C ++ PVD S + VLV E + AC Sbjct 2044 FNRPSVVCEN-KFNVLPVDVSEPTDRRPVPSAVLVTGAASGADASAISTEPGTAKEQKAC 2102 Query 1195 ESQTTTSEEVVENPTVQKEIIECDVKTTEVVGNVILKPSEEG-----------VKVTQEL 1243 S + + V+E QK+ V EV N + KP + KV + L Sbjct 2103 ASDSVEDQIVME---AQKKSSVTTVAVKEVKLNGVKKPVKWNCSVVVNDPTSETKVVKSL 2159 Query 1244 GHEDLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINS--VPWSKIL------AYV 1295 D+ ++ + NELS + T+ + ++ +P + +L +V Sbjct 2160 SIVDVYDMFLTGCRYVVWTANELSRLINSPTVREYVKWGMSKLIIPANLLLLRDEKQEFV 2219 Query 1296 KP-FLGQTAVITSNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTTIAKN 1354 P + A+ +K + FS ++ +T S++ L KN Sbjct 2220 APKVVKAKAIACYGAVKWFLLYCFS----WIKFNTDNKVIYTTEVASKLTFKLCCLAFKN 2275 Query 1355 SVKSVAKLCLDVCINY-VKSPKFSKLFTI-VMWL--LLLSICLGSL---------TYVTA 1401 ++++ N+ V S F + T+ ++W L ++ L +V Sbjct 2276 ALQT---------FNWSVVSRGFFLVATVFLLWFNFLYANVILSDFYLPNIGPLPMFVGQ 2326 Query 1402 VLGVCLSSLGVPSYCD--GVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALET 1459 ++ ++ GV + CD V +L SS FC G C +C SG D LD+Y ++ Sbjct 2327 IVAWVKTTFGVLTICDFYQVTDLGYRSS------FCNGSMVCELCFSGFDMLDNYESINV 2380 Query 1460 IQ-VTISSYKLD-LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNS-- 1515 +Q V D ++ L E ++ Y L+T FY L + MQ + F+ + Sbjct 2381 VQHVVDRRVSFDYISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMH 2440 Query 1516 WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVE 1575 W + + M P ++R YI + Y V+ H+M GC+ C+ CYKRNR+ RV+ Sbjct 2441 WSARLFVFVANMLPAFTLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVK 2500 Query 1576 CTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPIN 1635 C+T+V G R + V ANGG GFC H WNCLNC+++ G+TFI+ E A DLS + KRP+N Sbjct 2501 CSTVVGGSLRYYDVMANGGTGFCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVN 2560 Query 1636 PTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIV 1695 PTD + Y V V ++ L++++ GQ+ Y+ S FV+++ L + KG +V+V Sbjct 2561 PTDSAYYSVIEVKQVGCSMRLFYERDGQRVYDDVSASLFVDMNGLLHSKVKGVPETHVVV 2620 Query 1696 FDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATF 1755 + ++ +++ +A+V+Y+Q + +P+L++++ L++ VS MFD YV + Sbjct 2621 VENEA--DKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHL 2678 Query 1756 SVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQG-VVDTDVDTKDVIECLKLSHHS 1814 V + L + V AH+ L +GV L+ V+ TFV AR+ +D+DV+TK + + + + ++ Sbjct 2679 DVDRKSLTSFVNAAHNSLKEGVQLEQVMDTFVGCARRKCAIDSDVETKSITKSVMAAVNA 2738 Query 1815 DIEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSL 1874 +EVT +SCNN + TY K + + DLG I NA+H+ + VAK+ NV+ +W+V + L Sbjct 2739 GVEVTDESCNNLVPTYVKSDTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQL 2798 Query 1875 SEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 S L+ ++R A K + +LT V ++TT SLKGG Sbjct 2799 SADLQHRLRKACVKTGLKIKLTYNKQEANVPILTTPFSLKGG 2840 Range 2: 834 to 947 Score:70.1 bits(170), Expect:1e-11, Method:Compositional matrix adjust., Identities:44/114(39%), Positives:61/114(53%), Gaps:4/114(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 K V F + V EV + +KI F LD D VL++ CS + V+ + E VV +AV Sbjct 834 KKVVFNDKPKVKEVPSTRKIKIIFALDATFDSVLSKACSEFEVDKDVTLDELLDVVLDAV 893 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEE 113 TL P + + T + L+ YLFD+ GEE ++SRMYCSF PDE+ Sbjct 894 ESTLSPCKEHGVIGTKVCALLERLVDDYVYLFDEGGEEVIASRMYCSFSAPDED 947 Range 3: 1319 to 1473 Score:67.0 bits(162), Expect:8e-11, Method:Compositional matrix adjust., Identities:56/155(36%), Positives:83/155(53%), Gaps:2/155(1%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 +T NV D++K + VIVN AN + HG GVAGA+ KA A NE+ + ++ Sbjct 1319 ITPNVCFVKGDVIKVLRRVGAEVIVNPANGRMAHGAGVAGAIAKAAGKAFINETADMVKA 1378 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLLSA 306 G VGG +G L +K L++VGP+ + E LL+RAY++ N D ++ L+SA Sbjct 1379 QGVCQVGGCYESTGGKLCKKVLNIVGPDARGHGNECYSLLERAYQHINKCDNVVTTLISA 1438 Query 307 GIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 GIF SL + +V V L N++ +D I Sbjct 1439 GIFSVPTDVSLTYLLGVVTKNVILVSNNQDDFDVI 1473 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 1600 to 2788 Score:474 bits(1220), Expect:3e-136, Method:Compositional matrix adjust., Identities:368/1232(30%), Positives:571/1232(46%), Gaps:77/1232(6%) Query 719 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 778 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 779 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 839 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 898 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 899 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 957 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1835 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1076 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1950 Query 1077 SFD----NFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTS 1131 D NFKL LN GF E VT +P GDVV Y Sbjct 1951 KVDGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2008 Query 1132 FKKGAKLVHKPILW--HINQTTNKTTY--KPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQ 1187 + KG + KP++W H + N TY KP+ + N + VL V Sbjct 2009 YFKGCETFGKPVIWFCHDEASLNSLTYFNKPSF------------KSENRYSVLSV---- 2052 Query 1188 GMDNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHE 1246 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L Sbjct 2053 --DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLV 2110 Query 1247 DLMAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVIT 1306 D+ Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2111 DVWDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVP 2169 Query 1307 SNCIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTT-IAKNSVKSVAKLCLD 1365 I K F ++ ++ +F L FT K TT IA ++ L L Sbjct 2170 K--IFKARAIEFYGFLKWLFIYVFSLLHFTND-----KTIFYTTEIASKFTFNLFCLALK 2222 Query 1366 VCINYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSS 1409 + F K F +V W L +++ +V ++ ++ Sbjct 2223 NAFQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKAT 2282 Query 1410 LGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL 1469 G+ + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2283 FGLVTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVL 2338 Query 1470 D--LTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIV 1525 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + Sbjct 2339 FDYVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVA 2398 Query 1526 QMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKR 1585 M P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R Sbjct 2399 NMLPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIR 2458 Query 1586 SFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVD 1645 + + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV Sbjct 2459 YYDITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVT 2518 Query 1646 SVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEES 1705 + + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2519 DIKQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRA 2576 Query 1706 AAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKAL 1765 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + Sbjct 2577 NFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNF 2636 Query 1766 VATAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCN 1824 V AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ N Sbjct 2637 VNIAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYN 2696 Query 1825 NFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRS 1884 N + TY K +N+ DLG I A+H+ VAK N+S +W + + L+ L+ +++ Sbjct 2697 NLVPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKK 2756 Query 1885 AAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 A K + +LT V ++TT SLKGG Sbjct 2757 ACVKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Range 2: 1308 to 1464 Score:91.7 bits(226), Expect:2e-18, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 187 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 246 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 247 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 304 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 305 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 SAGIF SL + +V QV L N+K +D I Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1464 Range 3: 811 to 937 Score:67.4 bits(163), Expect:7e-11, Method:Compositional matrix adjust., Identities:42/128(33%), Positives:68/128(53%), Gaps:5/128(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEEDCEEC 119 L + + + L++ + YLFD+AG+E ++SRMYC+F ++ ED Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTF-AIEDVEDVISS 929 Query 120 EDEEETCE 127 E E+T + Sbjct 930 EAVEDTID 937 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 1600 to 2788 Score:473 bits(1217), Expect:8e-136, Method:Compositional matrix adjust., Identities:366/1230(30%), Positives:570/1230(46%), Gaps:73/1230(5%) Query 719 KTIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDD 778 K I V TVD N + + + +G+ G + DG DVTK+K + K + + Sbjct 1600 KKIDVLLTVDGVNFKSISLTVGEVFGKILGNVFCDGIDVTKLKCSDFYADKILYQYENLS 1659 Query 779 TLRSEAFEYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 A + D+ L Y + L KW G S + + NNCY++ L LQ Sbjct 1660 LADISAVQSSFGFDQQQLLAYYNFLT-VCKWSVVVNGPFFSFEQSHNNCYVNVACLMLQH 1718 Query 839 VEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAK 898 + +KFN QEA+Y RAG AL+LA + E D + + +L+ A+L A Sbjct 1719 INLKFNKWQWQEAWYEFRAGRPHRLVALVLAKGHFKFDEPSDATDFIRVVLKQADLSGAI 1778 Query 899 RVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVC-GRNATQYLVQQESSF 957 L ++C CG K + GV+AVM+ GTL+ +L G I C C GR + + F Sbjct 1779 CELELICD-CGIKQESRVGVDAVMHFGTLAKTDLFNGYKIGCNCAGR--IVHCTKLNVPF 1835 Query 958 VMMSAPPAEYKLQQGAFLCANEYTGNYQCGHYTHITAKETLYRVDGAHLTKMSEYKGPVT 1017 ++ S P L + AN + G GHYTH+ D + K + G +T Sbjct 1836 LICSNTPLSKDLPDDV-VAANMFMG-VGVGHYTHLKCGSPYQHYDACSVKKYTGVSGCLT 1893 Query 1018 DVFY-KETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQPIDLVPTQPMPNA 1076 D Y K + T +Y LD V P L YY YYT +PI + Q P A Sbjct 1894 DCLYLKNLTQTFTSMLTNYFLDDVEMVAYNPDLSQYYCDNGKYYT-KPI--IKAQFKPFA 1950 Query 1077 SFD----NFKLTCSNTKFADDLNQMTGFKKPASR-ELTVTFFPDLNGDVVAIDYRHYSTS 1131 D NFKL LN GF E VT +P GDVV Y Sbjct 1951 KVDGVYTNFKLV--GHDICAQLNDKLGFNVDLPFVEYKVTVWPVATGDVVLASDDLYVKR 2008 Query 1132 FKKGAKLVHKPILW--HINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVVEDTQGM 1189 + KG + KP++W H + N TY ++ + N + VL V Sbjct 2009 YFKGCETFGKPVIWFCHDEASLNSLTY----------FNKPSFKSENRYSVLSV------ 2052 Query 1190 DNLACESQTTTSEEVVENPTVQKEI-IECDVKTTEVVGNVILKPSEEGVKVTQELGHEDL 1248 D+++ ESQ V+E+ KE+ ++ KT ++ +I+ +KV + L D+ Sbjct 2053 DSVSEESQGNVVTSVMESQISTKEVKLKGVRKTVKIEDAIIVNDENSSIKVVKSLSLVDV 2112 Query 1249 MAAYVEETSITIKKPNELSLALGLKTLATHGAAAINSVPWSKILAYVKPFLGQTAVITSN 1308 Y+ + NELS + T+ + I + L ++ QT ++ Sbjct 2113 WDMYLTGCDYVVWVANELSRLVKSPTVREYIRYGIKPITIPIDLLCLRD-DNQTLLVPK- 2170 Query 1309 CIKKCVQRVFSNYMPYVITLLFQLCTFTKSTNSRIKASLPTT-IAKNSVKSVAKLCLDVC 1367 I K F ++ ++ +F L FT K TT IA ++ L L Sbjct 2171 -IFKARAIEFYGFLKWLFIYVFSLLHFTND-----KTIFYTTEIASKFTFNLFCLALKNA 2224 Query 1368 INYVKSPKFSKLFTIV-----MWL--LLLSICLGSL---------TYVTAVLGVCLSSLG 1411 + F K F +V W L +++ +V ++ ++ G Sbjct 2225 FQTFRWSIFIKGFLVVATVFLFWFNFLYINVIFSDFYLPNISVFPIFVGRIVMWIKATFG 2284 Query 1412 VPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKL-- 1469 + + CD +L + T FC G F C +C SG D LD+Y A++ +Q + L Sbjct 2285 LVTICDFYSKLGVG----FTSHFCNGSFICELCHSGFDMLDTYAAIDFVQYEVDRRVLFD 2340 Query 1470 DLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFI--SNSWLMWFIISIVQM 1527 ++ + L E ++ Y L+T +FY L +Q F + F+ + WL+ FI+ + M Sbjct 2341 YVSLVKLIVELVIGYSLYTVWFYPLFCLIGLQLFTTWLPDLFMLETMHWLIRFIVFVANM 2400 Query 1528 APVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSF 1587 P ++R YI + Y V HI+ GC + C+ CYKRN + RV+C+TIV GV R + Sbjct 2401 LPAFVLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYY 2460 Query 1588 YVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSV 1647 + ANGG GFC H WNC NC +F G+TFI+ E A +LS + KRP+NPTD S YVV + Sbjct 2461 DITANGGTGFCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDI 2520 Query 1648 TVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAA 1707 + L++D+ GQ+ Y+ S FV+++NL + K + V+V +S + + Sbjct 2521 KQVGCMMRLFYDRDGQRVYDDVDASLFVDINNLLHSKVKVVPNLYVVV--VESDADRANF 2578 Query 1708 KSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVA 1767 +A V+Y+Q + +PILL+D+ L++ + V+ MFD YVDTF + F V + V Sbjct 2579 LNAVVFYAQSLYRPILLVDKKLITTACNGISVTQIMFDVYVDTFMSHFDVDRKSFNNFVN 2638 Query 1768 TAHSELAKGVALDGVLSTFVSAARQGV-VDTDVDTKDVIECLKLSHHSDIEVTGDSCNNF 1826 AH+ L +GV L+ VL TFV R+ +D+DV+T+ + + + + + +E T ++ NN Sbjct 2639 IAHASLREGVQLEKVLDTFVGCVRKCCSIDSDVETRFITKSMISAVAAGLEFTDENYNNL 2698 Query 1827 MLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAA 1886 + TY K +N+ DLG I A+H+ VAK N+S +W + + L+ L+ +++ A Sbjct 2699 VPTYLKSDNIVAADLGVLIQNGAKHVQGNVAKVANISCIWFIDAFNQLTADLQHKLKKAC 2758 Query 1887 KKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 K + +LT V ++TT SLKGG Sbjct 2759 VKTGLKLKLTFNKQEASVPILTTPFSLKGG 2788 Range 2: 1308 to 1464 Score:91.7 bits(226), Expect:3e-18, Method:Compositional matrix adjust., Identities:57/157(36%), Positives:82/157(52%), Gaps:2/157(1%) Query 187 LKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYI 246 L +T NV DI+ A+ K VIVN AN H+ HGGGVA A+ A E+ + Sbjct 1308 LCITPNVCFVKGDIINVARLVKADVIVNPANGHMLHGGGVAKAIAVAAGKKFSKETAAMV 1367 Query 247 RQNGPLTVGGSCLLSGHNLAEKCLHVVGPNL--NAGEDVQLLKRAYENFNSQDVLLAPLL 304 + G VG + +G L + L++VGP+ + + LL RAY++ N+ D L+ L+ Sbjct 1368 KSKGVCQVGDCYVSTGGKLCKTILNIVGPDARQDGRQSYVLLARAYKHLNNYDCCLSTLI 1427 Query 305 SAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQI 341 SAGIF SL + +V QV L N+K +D I Sbjct 1428 SAGIFSVPADVSLTYLLGVVDKQVILVSNNKEDFDII 1464 Range 3: 811 to 925 Score:67.4 bits(163), Expect:6e-11, Method:Compositional matrix adjust., Identities:39/115(34%), Positives:62/115(53%), Gaps:4/115(3%) Query 4 KGVTFGED-TVLEVQGYKNVKITFELDVRVDKVLNEKCSVYTVESGTEVTEFACVVAEAV 62 + V F E V+E+ VK+ F+LD D +L + CS + VE G V +F VV +A+ Sbjct 811 RKVNFNEKPVVMEIPSLMTVKVMFDLDSTFDDILGKVCSEFEVEKGVTVDDFVAVVCDAI 870 Query 63 VKTLQPVSD---LLTPMGIDLDEWSVATFYLFDDAGEEKLSSRMYCSFYPPDEEE 114 L + + + L++ + YLFD+AG+E ++SRMYC+F D E+ Sbjct 871 ENALNSCKEHPVVGYQVRAFLNKLNENVVYLFDEAGDEAMASRMYCTFAIEDVED 925 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 2234 to 2778 Score:414 bits(1063), Expect:6e-117, Method:Compositional matrix adjust., Identities:222/549(40%), Positives:339/549(61%), Gaps:17/549(3%) Query 1377 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 1434 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S M+F Sbjct 2234 SSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEF 2292 Query 1435 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 1493 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2293 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2352 Query 1494 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 1548 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2353 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2409 Query 1549 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 1608 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2410 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2469 Query 1609 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 1668 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2470 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2529 Query 1669 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 1724 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2530 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2589 Query 1725 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 1784 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2590 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLK 2649 Query 1785 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 1843 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2650 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2709 Query 1844 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 1903 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2710 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2769 Query 1904 VNVITTKIS 1912 N+++ K S Sbjct 2770 DNILSVKFS 2778 Range 2: 1357 to 2092 Score:305 bits(781), Expect:3e-83, Method:Compositional matrix adjust., Identities:234/763(31%), Positives:361/763(47%), Gaps:71/763(9%) Query 557 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 614 + KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHGL+L ++ Sbjct 1357 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCSG-ICAMPFGYVTHGLDLAQS 1414 Query 615 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTE 674 +R +K P V ++S + + N + + +TPE F+ + G Y W Sbjct 1415 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWH------- 1465 Query 675 LGVEFLKRGDKIV--------YHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLR 716 L GD IV H +G I +F++ + LP L ++ L+ R Sbjct 1466 -----LVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1520 Query 717 EVK--TIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL 774 + I+V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV Sbjct 1521 AAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV- 1579 Query 775 PSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSS 831 +D+ SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ Sbjct 1580 -ADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINA 1638 Query 832 VLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 890 ++ + + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL Sbjct 1639 TIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLA 1698 Query 891 HANLE-SAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQY 949 A L SAK V C CG + G+ A +Y G S +EL++ + CVCG + Sbjct 1699 KAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQ 1758 Query 950 LVQQESSFVMMSAPPAEYKLQQGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGA 1004 LV+ + ++++S E K+ + N + G GHY HI K+ L Y+ D Sbjct 1759 LVEHSAPWLLVSG-LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSG 1817 Query 1005 HLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP 1064 LTK S+ K +T V+Y YT V Y LDGVT E+ P L YY K YYT +P Sbjct 1818 SLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1877 Query 1065 -IDLVPTQPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDL 1116 I P +P + + N L + D N + GF KP S++LT + P+ Sbjct 1878 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1937 Query 1117 NGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSN 1176 +GDV+ ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N Sbjct 1938 DGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 1997 Query 1177 SFEVLVVEDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTE---VVGNVILKPS 1233 + VL +Q E ++V P +++IE K V GN Sbjct 1998 KYTVLQDNTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVND 2049 Query 1234 EEGVKVTQELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTL 1275 GV V LG +L A YV+ T + + N S L T+ Sbjct 2050 PNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2092 Range 3: 1161 to 1290 Score:137 bits(345), Expect:4e-32, Method:Compositional matrix adjust., Identities:65/130(50%), Positives:85/130(65%), Gaps:0/130(0%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 + ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q ESDEYI Sbjct 1161 INNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISN 1220 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGI 308 NGPL VG S LL GH LA+ LHVVGP+ ED LLKR Y+ FN +++ PL+SAGI Sbjct 1221 NGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGI 1280 Query 309 FGAKPLQSLK 318 F P S + Sbjct 1281 FSVDPKVSFE 1290 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 2234 to 2778 Score:413 bits(1062), Expect:8e-117, Method:Compositional matrix adjust., Identities:222/549(40%), Positives:339/549(61%), Gaps:17/549(3%) Query 1377 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 1434 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S M+F Sbjct 2234 SSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEF 2292 Query 1435 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 1493 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2293 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2352 Query 1494 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 1548 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2353 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2409 Query 1549 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 1608 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2410 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2469 Query 1609 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 1668 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2470 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2529 Query 1669 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 1724 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2530 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2589 Query 1725 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 1784 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2590 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLK 2649 Query 1785 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 1843 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2650 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2709 Query 1844 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 1903 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2710 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2769 Query 1904 VNVITTKIS 1912 N+++ K S Sbjct 2770 DNILSVKFS 2778 Range 2: 1357 to 2092 Score:305 bits(780), Expect:4e-83, Method:Compositional matrix adjust., Identities:233/756(31%), Positives:362/756(47%), Gaps:57/756(7%) Query 557 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 614 + KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHGL+L ++ Sbjct 1357 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCSG-ICAMPFGYVTHGLDLAQS 1414 Query 615 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSY-SGQRT 673 +R +K P V ++S + + N + + +TPE F+ + G Y W SG Sbjct 1415 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1472 Query 674 ELGVEFLKRGDKIVYHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLREVK--TI 721 V + K + H +G I +F++ + LP L ++ L+ R + I Sbjct 1473 VKDVCYKK-----LLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNI 1527 Query 722 KVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLR 781 +V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV +D+ Sbjct 1528 EVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSE 1585 Query 782 SEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + Sbjct 1586 SEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDM 1645 Query 839 V-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-S 896 + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L S Sbjct 1646 LHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVS 1705 Query 897 AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESS 956 AK V C CG + G+ A +Y G S +EL++ + CVCG + LV+ + Sbjct 1706 AKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAP 1765 Query 957 FVMMSAPPAEYKLQQGA---FLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSE 1011 ++++S E K+ + N + G GHY HI K+ L Y+ D LTK S+ Sbjct 1766 WLLVSG-LNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSD 1824 Query 1012 YKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP-IDLVPT 1070 K +T V+Y YT V Y LDGVT E+ P L YY K YYT +P I P Sbjct 1825 MKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPA 1884 Query 1071 QPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDLNGDVVAI 1123 +P + + N L + D N + GF KP S++LT + P+ +GDV+ Sbjct 1885 TILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLS 1944 Query 1124 DYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVV 1183 ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N + VL Sbjct 1945 EFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQD 2004 Query 1184 EDTQGMDNLACESQTTTSEEVVENPTVQKEIIECDVKTTE---VVGNVILKPSEEGVKVT 1240 +Q E ++V P +++IE K V GN GV V Sbjct 2005 NTSQ-----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVV 2056 Query 1241 QELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTL 1275 LG +L A YV+ T + + N S L T+ Sbjct 2057 DTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2092 Range 3: 1161 to 1290 Score:137 bits(345), Expect:4e-32, Method:Compositional matrix adjust., Identities:65/130(50%), Positives:85/130(65%), Gaps:0/130(0%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 + ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q ESDEYI Sbjct 1161 INNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISN 1220 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGI 308 NGPL VG S LL GH LA+ LHVVGP+ ED LLKR Y+ FN +++ PL+SAGI Sbjct 1221 NGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGI 1280 Query 309 FGAKPLQSLK 318 F P S + Sbjct 1281 FSVDPKVSFE 1290 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 2241 to 2785 Score:413 bits(1061), Expect:1e-116, Method:Compositional matrix adjust., Identities:222/549(40%), Positives:339/549(61%), Gaps:17/549(3%) Query 1377 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 1434 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S +DF Sbjct 2241 SSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTS-FDVVDF 2299 Query 1435 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 1493 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2300 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2359 Query 1494 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 1548 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2360 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2416 Query 1549 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 1608 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2417 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2476 Query 1609 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 1668 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2477 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2536 Query 1669 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 1724 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2537 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2596 Query 1725 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 1784 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2597 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLK 2656 Query 1785 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 1843 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2657 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2716 Query 1844 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 1903 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2717 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2776 Query 1904 VNVITTKIS 1912 N+++ K S Sbjct 2777 DNILSVKFS 2785 Range 2: 1364 to 2099 Score:304 bits(778), Expect:6e-83, Method:Compositional matrix adjust., Identities:233/764(30%), Positives:365/764(47%), Gaps:73/764(9%) Query 557 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 614 + KG+ + I VD GV ++ Y++++ + +I N + MP GYVTHGL+L ++ Sbjct 1364 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQS 1421 Query 615 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSYSGQRTE 674 +R +K P V ++S + + N + + +TPE F+ + G Y W Sbjct 1422 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWH------- 1472 Query 675 LGVEFLKRGDKIV--------YHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLR 716 L GD IV H +G I +F++ + LP L ++ L+ R Sbjct 1473 -----LVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSR 1527 Query 717 EVK--TIKVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVL 774 + I+V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV Sbjct 1528 AAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFV- 1586 Query 775 PSDDTLRSEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSS 831 +D+ SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ Sbjct 1587 -ADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINA 1645 Query 832 VLLALQQV-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQ 890 ++ + + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL Sbjct 1646 TIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLA 1705 Query 891 HANLE-SAKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQY 949 A L SAK V C CG + G+ A +Y G S +EL++ + CVCG + Sbjct 1706 KAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQ 1765 Query 950 LVQQESSFVMMSAPPAEYKLQQG---AFLCANEYTG-NYQCGHYTHITAKETL-YRVDGA 1004 LV+ + ++++S E K+ + N + G GHY H+ K+ L Y+ D Sbjct 1766 LVEHSTPWLLVSG-LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSG 1824 Query 1005 HLTKMSEYKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP 1064 LTK S+ K +T V+Y + YT V Y LDGVT E+ P L YY K YYT +P Sbjct 1825 SLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKP 1884 Query 1065 -IDLVPTQPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDL 1116 I P +P + + N L + D N + GF KP S++LT + P+ Sbjct 1885 TIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNE 1944 Query 1117 NGDVVAIDYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSN 1176 +GDV+ ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N Sbjct 1945 DGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDN 2004 Query 1177 SFEVLVVEDTQGMDNLACESQTTTSEEVVENPTV-QKEIIECDVKTTE---VVGNVILKP 1232 + VL +Q ++ + VVE+ ++ +++IE K V GN Sbjct 2005 KYTVLQDNTSQLIE---------PNVPVVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVN 2055 Query 1233 SEEGVKVTQELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTL 1275 GV V LG +L A YV+ T + + N S L T+ Sbjct 2056 DPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2099 Range 3: 1168 to 1297 Score:130 bits(328), Expect:3e-30, Method:Compositional matrix adjust., Identities:63/130(48%), Positives:85/130(65%), Gaps:0/130(0%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 + ++V + D ++ A V+VNAAN HLKHGGG+AGA+NKA+ G +Q ESDEYI Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGI 308 +GPL VG S LL G+ LA+ L VVGP+ ED LLKR Y+ FN +++ PL+S+GI Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGI 1287 Query 309 FGAKPLQSLK 318 F P S + Sbjct 1288 FSVDPKVSFE 1297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 2241 to 2785 Score:412 bits(1059), Expect:2e-116, Method:Compositional matrix adjust., Identities:222/549(40%), Positives:339/549(61%), Gaps:17/549(3%) Query 1377 SKLFTIVMWLLLLS--ICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDF 1434 S ++ +V++ +LS + L T + A+ S LG+ + CDG+ Y N+S +DF Sbjct 2241 SSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCDGLAVEYRNTS-FDVVDF 2299 Query 1435 CQGY-FPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYL 1493 C C CL G DSL Y AL+ +Q I+SY L++ ++ A E+ LAY+L+T F + Sbjct 2300 CSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNV 2359 Query 1494 LGLSAIMQAFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFASFYYVWK 1548 L L Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Sbjct 2360 LLLVVTAQYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRK 2416 Query 1549 SYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNC 1608 Y H+++GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ C Sbjct 2417 FYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVEC 2476 Query 1609 DTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYER 1668 DT G+TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER Sbjct 2477 DTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYER 2536 Query 1669 HPLSHFVNLDNLRAN---NTKGSLP-INVIVFDGKSKCEESAAKSASVYYSQLMCQPILL 1724 +PL +F NL+ L+ T +P N +++D + +E+ A+SA VYYSQ++C+P+LL Sbjct 2537 YPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLL 2596 Query 1725 LDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLS 1784 +D LV+ VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL Sbjct 2597 VDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQTVLK 2656 Query 1785 TFVSAAR-QGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKVENMTPRDLGA 1843 TF AAR V++DV+T V++ L+ +H +DI++T + NN++ Y K +++ DLG Sbjct 2657 TFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGC 2716 Query 1844 CIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQV 1903 ID A +N ++ N + VWN DYM LS+ ++QIR A +K NIPFRLT + R Sbjct 2717 LIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAA 2776 Query 1904 VNVITTKIS 1912 N+++ K S Sbjct 2777 DNILSVKFS 2785 Range 2: 1364 to 2099 Score:303 bits(776), Expect:1e-82, Method:Compositional matrix adjust., Identities:232/757(31%), Positives:366/757(48%), Gaps:59/757(7%) Query 557 KYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGLNLEEA 614 + KG+ + I VD GV ++ Y++++ + +I N + MP GYVTHGL+L ++ Sbjct 1364 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGC-PGICAMPFGYVTHGLDLAQS 1421 Query 615 ARCMRSLKAPAVVSVSSPDAVTAYNGYLTSSSKTPEEYFVETTSLAGSYRDWSY-SGQRT 673 +R +K P V ++S + + N + + +TPE F+ + G Y W SG Sbjct 1422 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 1479 Query 674 ELGVEFLKRGDKIVYHTTGSPI-----EFHL--DGEVLPLDKL---KSLLSLREVK--TI 721 V + K + H +G I +F++ + LP L ++ L+ R + I Sbjct 1480 VKDVCYKK-----LLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNI 1534 Query 722 KVFTTVDNTNLHTHIVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLR 781 +V T+D N T I++ + T+ +Q G T+ G D++ P V G++ FV +D+ Sbjct 1535 EVLVTIDGVNFRTVILNDATTFRKQLGATFYKGVDISDALPTVKMGGESLFV--ADNLSE 1592 Query 782 SEAF---EYYHTIDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNNCYLSSVLLALQQ 838 SE EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + Sbjct 1593 SEEVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDM 1652 Query 839 V-EVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLE-S 896 + ++KF PALQ AY R + GD +F ALI+AY + T D + + LL A L S Sbjct 1653 LHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVS 1712 Query 897 AKRVLNVVCKHCGQKTTTLKGVEAVMYMGTLSYDELKTGVSIPCVCGRNATQYLVQQESS 956 AK V C CG + G+ A +Y G S +EL++ + CVCG + LV+ + Sbjct 1713 AKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSTP 1772 Query 957 FVMMSAPPAEYKLQQG---AFLCANEYTG-NYQCGHYTHITAKETL-YRVDGAHLTKMSE 1011 ++++S E K+ + N + G GHY H+ K+ L Y+ D LTK S+ Sbjct 1773 WLLVSG-LNEVKVSTSTDPVYRAFNVFQGVETSVGHYVHVRVKDGLFYKYDSGSLTKTSD 1831 Query 1012 YKGPVTDVFYKETSYTTAIKPVSYKLDGVTYTEIEPKLDGYYKKGNAYYTEQP-IDLVPT 1070 K +T V+Y + YT V Y LDGVT E+ P L YY K YYT +P I P Sbjct 1832 MKCKMTSVWYPKVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPA 1891 Query 1071 QPMPNASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELTVTFFPDLNGDVVAI 1123 +P + + N L + D N + GF KP S++LT + P+ +GDV+ Sbjct 1892 TILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLS 1951 Query 1124 DYRHYSTSFKKGAKLVHKPILWHINQTTNKTTYKPNIWCLRCLWSTKPVDTSNSFEVLVV 1183 ++ +Y+ +KKG L KPILW N + KPN LR L+ P+ N + VL Sbjct 1952 EFNNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQD 2011 Query 1184 EDTQGMDNLACESQTTTSEEVVENPTV-QKEIIECDVKTTE---VVGNVILKPSEEGVKV 1239 +Q ++ + VVE+ ++ +++IE K V GN GV V Sbjct 2012 NTSQLIE---------PNVPVVEDVSITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTV 2062 Query 1240 TQELGHEDLMAAYVE-ETSITIKKPNELSLALGLKTL 1275 LG +L A YV+ T + + N S L T+ Sbjct 2063 VDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTV 2099 Range 3: 1168 to 1297 Score:130 bits(328), Expect:3e-30, Method:Compositional matrix adjust., Identities:63/130(48%), Positives:85/130(65%), Gaps:0/130(0%) Query 189 LTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQ 248 + ++V + D ++ A V+VNAAN HLKHGGG+AGA+NKA+ G +Q ESDEYI Sbjct 1168 INNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGGGIAGAINKASGGDVQEESDEYISN 1227 Query 249 NGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGI 308 +GPL VG S LL G+ LA+ L VVGP+ ED LLKR Y+ FN +++ PL+S+GI Sbjct 1228 SGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAALLKRCYKTFNKHTIVVTPLISSGI 1287 Query 309 FGAKPLQSLK 318 F P S + Sbjct 1288 FSVDPKVSFE 1297 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Scotophilus bat coronavirus 512] Sequence ID: P0C6F6.1 Length: 4128 Range 1: 1984 to 2530 Score:186 bits(473), Expect:4e-47, Method:Compositional matrix adjust., Identities:159/600(27%), Positives:269/600(44%), Gaps:60/600(10%) Query 1324 YVITLLFQLCTFTKSTNSRIKASLP---TTIAKNSVKSVAKLCLDVCINYVKSPKFSKL- 1379 Y+ +LL K + ++ A +P I K SVK NY F +L Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVK----------YNYKALKFFFRLK 2033 Query 1380 FTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYF 1439 F + L S+ L +L Y + + + +G P C + Y NS+ D+C G Sbjct 2034 FQYIKVFLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-GNV 2089 Query 1440 PCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAI 1499 C +CL G + L + I K L L +L+ ++F FF +G++ Sbjct 2090 LCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGITYF 2146 Query 1500 MQAFFGY--FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGC 1557 + + A + N WL+ + P ++M + + + H++ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLL-------HLLPFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 1558 TSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTF 1617 +C+ C K + TRV TI+ GV +SFYV ANGG+ FCK HN+ C++CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 1618 ISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNL 1677 I+D +A +LS K + PT + ++D V NG +LY K + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 1678 DNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDST 1737 D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + + Sbjct 2320 DVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NV 2372 Query 1738 EVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDT 1797 + S + A+V+ S +F + + + R+ + + Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 1798 DVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKV-ENMTPRDLGACIDCNARHINAQV 1856 DV ++ + +H D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 1857 AKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 NV +VW KD+++LSE+ RK I K I F LT R + + T ++ K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Range 2: 1323 to 1486 Score:77.0 bits(188), Expect:7e-14, Method:Compositional matrix adjust., Identities:64/175(37%), Positives:90/175(51%), Gaps:16/175(9%) Query 212 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 271 +VNAAN L HGGG+A AL+ T G +Q S++Y+ +NG + VG L+ L+ Sbjct 1323 VVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE--HSILN 1380 Query 272 VVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQV-- 328 VVGP +LL +AY F + V L PLLS GIF +SL + V +V Sbjct 1381 VVGPR-KGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACVGDRVCK 1439 Query 329 -YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV-DVK 381 + + + L Q +++ S + E P E P ++E K VQ EKPV DVK Sbjct 1440 CFCYTDKERLAIQ---NFVTSF--QTEQP-VEPLPVIQEVKGVQ--LEKPVPDVK 1486 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 1990 to 2483 Score:187 bits(474), Expect:4e-47, Method:Compositional matrix adjust., Identities:155/552(28%), Positives:243/552(44%), Gaps:78/552(14%) Query 1385 WLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVC 1444 WLL L L Y + + G ++C Y SN D+C G C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYA-KSNFVKDDYCDGSLGCKMC 2048 Query 1445 LSGLDSLDSYPALETIQVTISS--------YKLDLTFLGLAAEWLLAYMLFTKFFYLLGL 1496 L G L + L+ + I+ + + + L +L ++L+ ++ + Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLY----FVAQM 2104 Query 1497 SAIMQAFFGYFASHFISNSWLMWFII--SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIM 1554 + + F GY ++ W + FI I V+ +V I F H++ Sbjct 2105 ISTVGVFLGYKETN-----WFLHFIPFDVICDELLVTVIVIKVISFVR---------HVL 2150 Query 1555 DGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAG 1614 GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + C++CD++ G Sbjct 2151 FGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYG 2210 Query 1615 STFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY---------FDKAGQKT 1665 STFI+ EV+R+L K + PT + ++D V +NG LY FD K Sbjct 2211 STFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKY 2270 Query 1666 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLL 1725 + + LD+ N G+ NV + K+ASVY+SQL+C+PI L+ Sbjct 2271 SCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRPIKLV 2316 Query 1726 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 1785 D L+S + S + + + AY+D +F + L A ++ A + A G+++ Sbjct 2317 DSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD--HE 2369 Query 1786 FVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKV-ENMTPRDLGAC 1844 F SA +H D+ ++ S NNF+ +Y K E ++ DL C Sbjct 2370 FTSAISN------------------AHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACC 2411 Query 1845 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1904 + A+ +NA V +VW+ KD+ SLS + RK I +K + F LT + V Sbjct 2412 MRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVT 2471 Query 1905 NVITTKISLKGG 1916 + T I K G Sbjct 2472 QIPATSIVAKQG 2483 Range 2: 1254 to 1467 Score:90.9 bits(224), Expect:5e-18, Method:Compositional matrix adjust., Identities:75/232(32%), Positives:114/232(49%), Gaps:27/232(11%) Query 162 LDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLK 221 + + ++ P+ E + +E +N F+ + DNVA D+ IVNAAN +L Sbjct 1254 IKNTVDTTPKEEFVVKEKLNAFL----VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLA 1309 Query 222 HGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGE 281 HGGG+A AL+ T G +Q S E+I G + VG ++ +L + +VVGP E Sbjct 1310 HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--RIFNVVGPRKGKHE 1367 Query 282 DVQLLKRAYENFNS-QDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQ 340 LL +AY N+ Q L P+LS GIFG K SL++ +++ T+ + Sbjct 1368 R-DLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----------EV 1415 Query 341 IVLDYLDSLKPKVE-------SPNKEEEPKLE-EPKAVQPVAEKPVDVKPKI 384 V Y D+ KV+ + K E+PK+E +P +V VA KP V K Sbjct 1416 KVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRVDGKF 1467 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus 229E] Sequence ID: P0C6U2.1 Length: 4085 Range 1: 1990 to 2483 Score:186 bits(473), Expect:4e-47, Method:Compositional matrix adjust., Identities:155/552(28%), Positives:243/552(44%), Gaps:78/552(14%) Query 1385 WLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVC 1444 WLL L L Y + + G ++C Y SN D+C G C +C Sbjct 1990 WLLAKFTKLLLLIYTLYSVVLLCVRFGPFNFCSETVNGYA-KSNFVKDDYCDGSLGCKMC 2048 Query 1445 LSGLDSLDSYPALETIQVTISS--------YKLDLTFLGLAAEWLLAYMLFTKFFYLLGL 1496 L G L + L+ + I+ + + + L +L ++L+ ++ + Sbjct 2049 LFGYQELSQFSHLDVVWKHITDPLFSNMQPFIVMVLLLIFGDNYLRCFLLY----FVAQM 2104 Query 1497 SAIMQAFFGYFASHFISNSWLMWFII--SIVQMAPVSAMVRMYIFFASFYYVWKSYVHIM 1554 + + F GY ++ W + FI I V+ +V I F H++ Sbjct 2105 ISTVGVFLGYKETN-----WFLHFIPFDVICDELLVTVIVIKVISFVR---------HVL 2150 Query 1555 DGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAG 1614 GC + C+ C K R R TIVNGV+RSFYV ANGG FCK H + C++CD++ G Sbjct 2151 FGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSKFCKKHRFFCVDCDSYGYG 2210 Query 1615 STFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY---------FDKAGQKT 1665 STFI+ EV+R+L K + PT + ++D V +NG LY FD K Sbjct 2211 STFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLYSCETFWRYNFDITESKY 2270 Query 1666 YERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLL 1725 + + LD+ N G+ NV + K+ASVY+SQL+C+PI L+ Sbjct 2271 SCKEVFKNCNVLDDFIVFNNNGT---NV-----------TQVKNASVYFSQLLCRPIKLV 2316 Query 1726 DQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLST 1785 D L+S + S + + + AY+D +F + L A ++ A + A G+++ Sbjct 2317 DSELLSTL--SVDFNGVLHKAYIDVLRNSFG---KDLNANMSLAECKRALGLSISD--HE 2369 Query 1786 FVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKV-ENMTPRDLGAC 1844 F SA +H D+ ++ S NNF+ +Y K E ++ DL C Sbjct 2370 FTSAISN------------------AHRCDVLLSDLSFNNFVSSYAKPEEKLSAYDLACC 2411 Query 1845 IDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVV 1904 + A+ +NA V +VW+ KD+ SLS + RK I +K + F LT + V Sbjct 2412 MRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQAVT 2471 Query 1905 NVITTKISLKGG 1916 + T I K G Sbjct 2472 QIPATSIVAKQG 2483 Range 2: 1254 to 1467 Score:90.5 bits(223), Expect:6e-18, Method:Compositional matrix adjust., Identities:75/232(32%), Positives:114/232(49%), Gaps:27/232(11%) Query 162 LDDAIEAEPEPEPLPEEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLK 221 + + ++ P+ E + +E +N F+ + DNVA D+ IVNAAN +L Sbjct 1254 IKNTVDTTPKEEFVVKEKLNAFL----VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLA 1309 Query 222 HGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLHVVGPNLNAGE 281 HGGG+A AL+ T G +Q S E+I G + VG ++ +L + +VVGP E Sbjct 1310 HGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--RIFNVVGPRKGKHE 1367 Query 282 DVQLLKRAYENFNS-QDVLLAPLLSAGIFGAKPLQSLKMCVEIVRTQVYLAVNDKSLYDQ 340 LL +AY N+ Q L P+LS GIFG K SL++ +++ T+ + Sbjct 1368 R-DLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNTK-----------EV 1415 Query 341 IVLDYLDSLKPKVE-------SPNKEEEPKLE-EPKAVQPVAEKPVDVKPKI 384 V Y D+ KV+ + K E+PK+E +P +V VA KP V K Sbjct 1416 KVFVYTDTEVCKVKDFVSGLVNVQKVEQPKIEPKPVSVIKVAPKPYRVDGKF 1467 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 1984 to 2530 Score:186 bits(473), Expect:4e-47, Method:Compositional matrix adjust., Identities:159/600(27%), Positives:269/600(44%), Gaps:60/600(10%) Query 1324 YVITLLFQLCTFTKSTNSRIKASLPT---TIAKNSVKSVAKLCLDVCINYVKSPKFSKL- 1379 Y+ +LL K + ++ A +P I K SVK NY F +L Sbjct 1984 YLFSLLAICFRALKKRDMKVMAGVPERTGIILKRSVK----------YNYKALKFFFRLK 2033 Query 1380 FTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYF 1439 F + L S+ L +L Y + + + +G P C + Y NS+ D+C G Sbjct 2034 FQYIKVFLKFSLVLYTL-YALMFMFIRFTPVGTP-ICKRYTDGYANST-FDKNDYC-GNV 2089 Query 1440 PCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAI 1499 C +CL G + L + I K L L +L+ ++F FF +G++ Sbjct 2090 LCKICLYGYEELSDFTHTRVIW---QHLKDPLIGNILPLFYLVFLIIFGGFFVRIGITYF 2146 Query 1500 MQAFFGY--FASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGC 1557 + + A + N WL+ + P ++M + + + H++ GC Sbjct 2147 IMQYINAAGVALGYQDNVWLL-------HLLPFNSMGNIIVVAFIVTRILLFLKHVLFGC 2199 Query 1558 TSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTF 1617 +C+ C K + TRV TI+ GV +SFYV ANGG+ FCK HN+ C++CD++ G TF Sbjct 2200 DKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKKFCKKHNFFCVDCDSYGYGCTF 2259 Query 1618 ISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNL 1677 I+D +A +LS K + PT + ++D V NG +LY K + + Sbjct 2260 INDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLYSGSTFWKYNFDITEAKYACK 2319 Query 1678 DNLRANNTKGSLPINVIVFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDST 1737 D L+ N + + +VF+ S + K+A VY+SQL+C+PI L+D AL++ + + Sbjct 2320 DVLKNCN----ILTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NV 2372 Query 1738 EVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDT 1797 + S + A+V+ S +F + + + R+ + + Sbjct 2373 DFSANLHKAFVEVLSNSFGKDLSNCSNM----------------------NECRESLGLS 2410 Query 1798 DVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYNKV-ENMTPRDLGACIDCNARHINAQV 1856 DV ++ + +H D+ ++ S NN +++Y K E + D+ C+ A+ +N V Sbjct 2411 DVPEEEFSAAVSEAHRYDVLISDVSFNNLIVSYAKPEEKLAVHDIANCMRVGAKVVNHNV 2470 Query 1857 AKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 NV +VW KD+++LSE+ RK I K I F LT R + + T ++ K G Sbjct 2471 LTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRMHLTIPTISVANKKG 2530 Range 2: 1317 to 1486 Score:77.4 bits(189), Expect:6e-14, Method:Compositional matrix adjust., Identities:63/181(35%), Positives:88/181(48%), Gaps:16/181(8%) Query 206 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 265 S +VNAAN L HGGG+A AL+ T G +Q S++Y+ +NG + VG L+ Sbjct 1317 SVNHDFVVNAANEQLSHGGGIAKALDDLTKGELQVLSNQYVSRNGSIKVGSGVLIKCKE- 1375 Query 266 AEKCLHVVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIV 324 L+VVGP +LL +AY F + V L PLLS GIF +SL + V Sbjct 1376 -HSILNVVGPR-KGKHAAELLTKAYTFVFKQKGVPLMPLLSVGIFKVPITESLAAFLACV 1433 Query 325 RTQV---YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV-DV 380 +V + + + L Q + + +P E P ++E K VQ EKPV DV Sbjct 1434 GDRVCKCFCYTDKERLAIQNFVTSFQTEQP------VEPLPVIQEVKGVQ--LEKPVPDV 1485 Query 381 K 381 K Sbjct 1486 K 1486 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 2037 to 2516 Score:176 bits(445), Expect:7e-44, Method:Compositional matrix adjust., Identities:146/524(28%), Positives:228/524(43%), Gaps:49/524(9%) Query 1398 YVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPAL 1457 Y + + + +G P CD V Y NSS ++C C VCL G L + Sbjct 2037 YALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCNSVI-CKVCLYGYQELSDFSHT 2093 Query 1458 ETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAF-FGYFASH--FISN 1514 + + L +G + Y+ F F + + AI F F Y S F+ Sbjct 2094 QVVW-----QHLRDPLIGNVMPFF--YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGL 2146 Query 1515 SWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRV 1574 +WF+ Q+ P + F V H+ GC ++C+ C K R RV Sbjct 2147 QQSIWFL----QLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRV 2202 Query 1575 ECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPI 1634 TI G +SFYV+ANGG FCK HN+ CLNCD++ G TFI+D +A ++ K + Sbjct 2203 PVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNV 2262 Query 1635 NPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVI 1694 PT + ++D V NG +LY K S + + L+ S+ + I Sbjct 2263 QPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFI 2318 Query 1695 VFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSAT 1754 VF+ + K+A VY+SQ++C+P+ L+D AL++ + S + + A+V S + Sbjct 2319 VFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNS 2375 Query 1755 FSVPMEKLKALVATAHSELAKGVALDGV-LSTFVSAARQGVVDTDVDTKDVIECLKLSHH 1813 F + + + + D V L TF +A + +H Sbjct 2376 FGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE------------------AHR 2412 Query 1814 SDIEVTGDSCNNFMLTYNKVENMTP-RDLGACIDCNARHINAQVAKSHNVSLVWNVKDYM 1872 D+ +T S NNF +Y K E P D+ C+ A+ +N V ++ +VW V+D++ Sbjct 2413 YDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFI 2472 Query 1873 SLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 +LSE+ RK I K I F LT R + T I+ K G Sbjct 2473 ALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKG 2516 Range 2: 1317 to 1589 Score:81.3 bits(199), Expect:3e-15, Method:Compositional matrix adjust., Identities:83/281(30%), Positives:132/281(46%), Gaps:28/281(9%) Query 212 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 271 +VNAAN L HGGG+A A++ T G +Q S++YI+ +GP+ VG +L L K + Sbjct 1317 VVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA--LGLKVFN 1374 Query 272 VVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIV--RTQV 328 VVGP +LL +AY++ F + V L PL+S GIF +SL + V R Sbjct 1375 VVGPR-KGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCK 1433 Query 329 YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV--DVKP-KIK 385 DK + ++ Y+D L + + ++E VQ V++KPV + +P +I+ Sbjct 1434 CFCYGDKE--REAIIKYMDGLVDAIFKEALVDTTPVQED--VQQVSQKPVLPNFEPFRIE 1489 Query 386 A------CIDEVTTTLEETKFL--TNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPY 437 C E +L K + TN L F + GK D + E ++ +K Sbjct 1490 GAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSV-GKCLNDVTSGALLEAINVFKKSNKT 1548 Query 438 I-VGDVITSG-----DITCVIIPAKKSGGTTEMLARALKEV 472 + G+ +T IT V++P + ARA+ +V Sbjct 1549 VPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKV 1589 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6V6.1 Length: 4117 Range 1: 2037 to 2516 Score:175 bits(444), Expect:8e-44, Method:Compositional matrix adjust., Identities:146/524(28%), Positives:228/524(43%), Gaps:49/524(9%) Query 1398 YVTAVLGVCLSSLGVPSYCDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPAL 1457 Y + + + +G P CD V Y NSS ++C C VCL G L + Sbjct 2037 YALLFMTIRFTPIGSP-VCDDVVAGYANSS-FDKNEYCNSVI-CKVCLYGYQELSDFSHT 2093 Query 1458 ETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFYLLGLSAIMQAF-FGYFASH--FISN 1514 + + L +G + Y+ F F + + AI F F Y S F+ Sbjct 2094 QVVW-----QHLRDPLIGNVMPFF--YLAFLAIFGGVYVKAITLYFIFQYLNSLGVFLGL 2146 Query 1515 SWLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRV 1574 +WF+ Q+ P + F V H+ GC ++C+ C K R RV Sbjct 2147 QQSIWFL----QLVPFDVFGDEIVVFFIVTRVLMFIKHVCLGCDKASCVACSKSARLKRV 2202 Query 1575 ECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPI 1634 TI G +SFYV+ANGG FCK HN+ CLNCD++ G TFI+D +A ++ K + Sbjct 2203 PVQTIFQGTSKSFYVHANGGSKFCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNV 2262 Query 1635 NPTDQSAYVVDSVTVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVI 1694 PT + ++D V NG +LY K S + + L+ S+ + I Sbjct 2263 QPTGPATILIDKVEFSNGFYYLYSGDTFWKYNFDITDSKYTCKEALK----NCSIITDFI 2318 Query 1695 VFDGKSKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSAT 1754 VF+ + K+A VY+SQ++C+P+ L+D AL++ + S + + A+V S + Sbjct 2319 VFNNNGS-NVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNS 2375 Query 1755 FSVPMEKLKALVATAHSELAKGVALDGV-LSTFVSAARQGVVDTDVDTKDVIECLKLSHH 1813 F + + + + D V L TF +A + +H Sbjct 2376 FGKDLSSCNDM-----QDCKSTLGFDDVPLDTFNAAVAE------------------AHR 2412 Query 1814 SDIEVTGDSCNNFMLTYNKVENMTP-RDLGACIDCNARHINAQVAKSHNVSLVWNVKDYM 1872 D+ +T S NNF +Y K E P D+ C+ A+ +N V ++ +VW V+D++ Sbjct 2413 YDVLLTDMSFNNFTTSYAKPEEKFPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFI 2472 Query 1873 SLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGG 1916 +LSE+ RK I K I F LT R + T I+ K G Sbjct 2473 ALSEETRKYIIRTTKVKGITFMLTFNDCRMHTTIPTVCIANKKG 2516 Range 2: 1317 to 1589 Score:80.9 bits(198), Expect:5e-15, Method:Compositional matrix adjust., Identities:83/281(30%), Positives:132/281(46%), Gaps:28/281(9%) Query 212 IVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCLH 271 +VNAAN L HGGG+A A++ T G +Q S++YI+ +GP+ VG +L L K + Sbjct 1317 VVNAANEKLSHGGGIAKAIDVYTKGMLQKCSNDYIKAHGPIKVGRGVMLEA--LGLKVFN 1374 Query 272 VVGPNLNAGEDVQLLKRAYEN-FNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIV--RTQV 328 VVGP +LL +AY++ F + V L PL+S GIF +SL + V R Sbjct 1375 VVGPR-KGKHAPELLVKAYKSVFANSGVALTPLISVGIFSVPLEESLSAFLACVGDRHCK 1433 Query 329 YLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEPKAVQPVAEKPV--DVKP-KIK 385 DK + ++ Y+D L + + ++E VQ V++KPV + +P +I+ Sbjct 1434 CFCYGDKE--REAIIKYMDGLVDAIFKEALVDTTPVQED--VQQVSQKPVLPNFEPFRIE 1489 Query 386 A------CIDEVTTTLEETKFL--TNKLLLFADINGKLYQDSQNMLRGEDMSFLEKDAPY 437 C E +L K + TN L F + GK D + E ++ +K Sbjct 1490 GAHAFYECNPEGLMSLGADKLVLFTNSNLDFCSV-GKCLNDVTSGALLEAINVFKKSNKT 1548 Query 438 I-VGDVITSG-----DITCVIIPAKKSGGTTEMLARALKEV 472 + G+ +T IT V++P + ARA+ +V Sbjct 1549 VPAGNCVTLDCANMISITMVVLPFDGDANYDKNYARAVVKV 1589 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 2060 to 2461 Score:172 bits(435), Expect:1e-42, Method:Compositional matrix adjust., Identities:128/449(29%), Positives:208/449(46%), Gaps:60/449(13%) Query 1481 LLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFF 1540 L+ ++F + GL + F F S F+ WF+ P + F Sbjct 2060 LVILLIFGNMYLRFGLLYFVAQFISTFGS-FLGFHQKQWFL----HFVPFDVLCNE--FL 2112 Query 1541 ASFYYVWKSYV---HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGF 1597 A+F V K + HI+ GC ++ C+ C K R RV TI+NG+ +SFYV ANGG F Sbjct 2113 ATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCF 2171 Query 1598 CKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY 1657 C HN+ C+NCD+F G+TFI+ ++AR+L K + PT + ++D V NG LY Sbjct 2172 CNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLY 2231 Query 1658 ---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 1708 FD K + L + L+N N GS N+ + K Sbjct 2232 SGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI-----------TQIK 2277 Query 1709 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1768 +A VY+SQL+C+PI L++ L+S + S + + + AYVD +F ++L A ++ Sbjct 2278 NACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF---FKELTANMSM 2332 Query 1769 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFML 1828 A + G+ V D + + +H D+ ++ S NNF + Sbjct 2333 AECKATLGLT--------------------VSDDDFVSAVANAHRYDVLLSDLSFNNFFI 2372 Query 1829 TYNKVEN-MTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 1887 +Y K E+ ++ D+ C+ ++ +N V ++ +VW VKD+ +LS++ +K + K Sbjct 2373 SYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTK 2432 Query 1888 KNNIPFRLTCATTRQVVNVITTKISLKGG 1916 + F LT + + V T I K G Sbjct 2433 AKGLTFLLTFNDNQAITQVPATSIVAKQG 2461 Range 2: 1265 to 1434 Score:80.1 bits(196), Expect:8e-15, Method:Compositional matrix adjust., Identities:63/185(34%), Positives:89/185(48%), Gaps:19/185(10%) Query 192 NVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGP 251 NV DI +VNAAN +L HGGGVA A++ T G +Q+ S +YI NGP Sbjct 1265 NVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGP 1324 Query 252 LTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQD-VLLAPLLSAGIFG 310 L VG +L +VVGP E LL AY + ++ + L PLLS GIFG Sbjct 1325 LKVGAGVMLECEKF--NVFNVVGPRTGKHEH-SLLVEAYNSILFENGIPLMPLLSCGIFG 1381 Query 311 AKPLQSLKM---CVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEP 367 + SLK C QV++ +++ +Q VL +LD L + P +++ Sbjct 1382 VRIENSLKALFSCDINKPLQVFVYSSNE---EQAVLKFLDGL---------DLTPVIDDV 1429 Query 368 KAVQP 372 V+P Sbjct 1430 DVVKP 1434 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus NL63] Sequence ID: P0C6U6.1 Length: 4060 Range 1: 2060 to 2461 Score:171 bits(434), Expect:1e-42, Method:Compositional matrix adjust., Identities:128/449(29%), Positives:208/449(46%), Gaps:60/449(13%) Query 1481 LLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFF 1540 L+ ++F + GL + F F S F+ WF+ P + F Sbjct 2060 LVILLIFGNMYLRFGLLYFVAQFISTFGS-FLGFHQKQWFL----HFVPFDVLCNE--FL 2112 Query 1541 ASFYYVWKSYV---HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGF 1597 A+F V K + HI+ GC ++ C+ C K R RV TI+NG+ +SFYV ANGG F Sbjct 2113 ATFI-VCKIVLFVRHIIVGCNNADCVACSKSARLKRVPLQTIINGMHKSFYVNANGGTCF 2171 Query 1598 CKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY 1657 C HN+ C+NCD+F G+TFI+ ++AR+L K + PT + ++D V NG LY Sbjct 2172 CNKHNFFCVNCDSFGPGNTFINGDIARELGNVVKTAVQPTAPAYVIIDKVDFVNGFYRLY 2231 Query 1658 ---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAK 1708 FD K + L + L+N N GS N+ + K Sbjct 2232 SGDTFWRYDFDITESKYSCKEVLKNCNVLENFIVYNNSGS---NI-----------TQIK 2277 Query 1709 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1768 +A VY+SQL+C+PI L++ L+S + S + + + AYVD +F ++L A ++ Sbjct 2278 NACVYFSQLLCEPIKLVNSELLSTL--SVDFNGVLHKAYVDVLCNSF---FKELTANMSM 2332 Query 1769 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFML 1828 A + G+ V D + + +H D+ ++ S NNF + Sbjct 2333 AECKATLGLT--------------------VSDDDFVSAVANAHRYDVLLSDLSFNNFFI 2372 Query 1829 TYNKVEN-MTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAK 1887 +Y K E+ ++ D+ C+ ++ +N V ++ +VW VKD+ +LS++ +K + K Sbjct 2373 SYAKPEDKLSVYDIACCMRAGSKVVNHNVLIKESIPIVWGVKDFNTLSQEGKKYLVKTTK 2432 Query 1888 KNNIPFRLTCATTRQVVNVITTKISLKGG 1916 + F LT + + V T I K G Sbjct 2433 AKGLTFLLTFNDNQAITQVPATSIVAKQG 2461 Range 2: 1265 to 1434 Score:80.1 bits(196), Expect:9e-15, Method:Compositional matrix adjust., Identities:63/185(34%), Positives:89/185(48%), Gaps:19/185(10%) Query 192 NVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGP 251 NV DI +VNAAN +L HGGGVA A++ T G +Q+ S +YI NGP Sbjct 1265 NVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGP 1324 Query 252 LTVGGSCLLSGHNLAEKCLHVVGPNLNAGEDVQLLKRAYENFNSQD-VLLAPLLSAGIFG 310 L VG +L +VVGP E LL AY + ++ + L PLLS GIFG Sbjct 1325 LKVGAGVMLECEKF--NVFNVVGPRTGKHEH-SLLVEAYNSILFENGIPLMPLLSCGIFG 1381 Query 311 AKPLQSLKM---CVEIVRTQVYLAVNDKSLYDQIVLDYLDSLKPKVESPNKEEEPKLEEP 367 + SLK C QV++ +++ +Q VL +LD L + P +++ Sbjct 1382 VRIENSLKALFSCDINKPLQVFVYSSNE---EQAVLKFLDGL---------DLTPVIDDV 1429 Query 368 KAVQP 372 V+P Sbjct 1430 DVVKP 1434 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6V5.1 Length: 3953 Range 1: 1801 to 2260 Score:164 bits(415), Expect:2e-40, Method:Compositional matrix adjust., Identities:148/511(29%), Positives:221/511(43%), Gaps:82/511(16%) Query 1432 MDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFF 1491 + +C G F C VCL DSL Y +++ YK + + WL Y++F F Sbjct 1801 LRYCAGDFTCRVCLHDRDSLHLYKHAYSVE---QIYKDAASGINFNWNWL--YLVFLILF 1855 Query 1492 ---------------YLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRM 1536 YL+ S ++Q G+ L WF V + Sbjct 1856 VKPVAGFVIICYCVKYLVLSSTVLQTGVGF----------LDWF---------VKTVFTH 1896 Query 1537 YIFFASFYYVWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 + F + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY Sbjct 1897 FNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYT 1956 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + +VV V + Sbjct 1957 NSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVD 2016 Query 1652 GALHLYFDKA-GQKTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESA--- 1706 ++L + A K + F D L +A K +L I DG C + Sbjct 2017 DFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHA 2076 Query 1707 ---AKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 1763 AK+A+VYY+Q +C+PIL+LDQAL + VS + D S SV Sbjct 2077 LEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVD----- 2130 Query 1764 ALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGD 1821 TA G D +LS TKD ++ H+ ++E TGD Sbjct 2131 ----TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHEVEYTGD 2171 Query 1822 SCNNFMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRK 1880 N + +Y + +TPRD G I+ +A N +V + V VW D + LS+ K Sbjct 2172 GFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDSCLK 2229 Query 1881 QIRSAAKKNNIPFRLTCATTRQVVNVITTKI 1911 + SA K+ F +T + +QV++ T K+ Sbjct 2230 YLISATVKSGGRFFITKSGAKQVISCHTQKL 2260 Range 2: 1011 to 1150 Score:48.5 bits(114), Expect:3e-05, Method:Compositional matrix adjust., Identities:43/152(28%), Positives:71/152(46%), Gaps:15/152(9%) Query 177 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 236 E+P +F+ Y ++A+ I K K IVNAAN H+ HGGGVA A+ Sbjct 1011 EKP--KFLEYKTCVGDLAVV---IAKALDEFKEFCIVNAANEHMSHGGGVAKAIADFCGP 1065 Query 237 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNS 295 +Y++++GP + +C+ +VVGP + L AY++ Sbjct 1066 DFVEYCADYVKKHGPQQ---KLVTPSFVKGIQCVNNVVGPRHGDSNLREKLVAAYKSVLV 1122 Query 296 QDVL--LAPLLSAGIFGAKPLQSLKMCVEIVR 325 V+ + P+LS+GIFG K+ ++ +R Sbjct 1123 GGVVNYVVPVLSSGIFGV----DFKISIDAMR 1150 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 1801 to 2260 Score:164 bits(414), Expect:3e-40, Method:Compositional matrix adjust., Identities:148/511(29%), Positives:221/511(43%), Gaps:82/511(16%) Query 1432 MDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFF 1491 + +C G F C VCL DSL Y +++ YK + + WL Y++F F Sbjct 1801 LRYCAGDFTCRVCLHDRDSLHLYKHAYSVE---QIYKDAASGINFNWNWL--YLVFLILF 1855 Query 1492 ---------------YLLGLSAIMQAFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRM 1536 YL+ S ++Q G+ L WF V + Sbjct 1856 VKPVAGFVIICYCVKYLVLSSTVLQTGVGF----------LDWF---------VKTVFTH 1896 Query 1537 YIFFASFYYVWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYA 1591 + F + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY Sbjct 1897 FNFMGAGFYFWLFYKIYVQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYT 1956 Query 1592 NGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKN 1651 N G FCK HNW C NCD + +TF+S EVA +LS + KR + PT + +VV V + Sbjct 1957 NSGYNFCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVYEACVVD 2016 Query 1652 GALHLYFDKA-GQKTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESA--- 1706 ++L + A K + F D L +A K +L I DG C + Sbjct 2017 DFVNLKYKAAIPGKDNASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHA 2076 Query 1707 ---AKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLK 1763 AK+A+VYY+Q +C+PIL+LDQAL + VS + D S SV Sbjct 2077 LEEAKNAAVYYAQYLCKPILILDQALYEQL-IVEPVSKSVIDKVCSILSNIISVD----- 2130 Query 1764 ALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGD 1821 TA G D +LS TKD ++ H+ ++E TGD Sbjct 2131 ----TAALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHEVEYTGD 2171 Query 1822 SCNNFMLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRK 1880 N + +Y + +TPRD G I+ +A N +V + V VW D + LS+ K Sbjct 2172 GFTNVIPSYGMDTDKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSDLIKLSDSCLK 2229 Query 1881 QIRSAAKKNNIPFRLTCATTRQVVNVITTKI 1911 + SA K+ F +T + +QV++ T K+ Sbjct 2230 YLISATVKSGGRFFITKSGAKQVISCHTQKL 2260 Range 2: 1011 to 1150 Score:48.5 bits(114), Expect:3e-05, Method:Compositional matrix adjust., Identities:43/152(28%), Positives:71/152(46%), Gaps:15/152(9%) Query 177 EEPVNQFVGYLKLTDNVAIKCIDIVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNG 236 E+P +F+ Y ++A+ I K K IVNAAN H+ HGGGVA A+ Sbjct 1011 EKP--KFLEYKTCVGDLAVV---IAKALDEFKEFCIVNAANEHMSHGGGVAKAIADFCGP 1065 Query 237 AMQNESDEYIRQNGPLTVGGSCLLSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNS 295 +Y++++GP + +C+ +VVGP + L AY++ Sbjct 1066 DFVEYCADYVKKHGPQQ---KLVTPSFVKGIQCVNNVVGPRHGDSNLREKLVAAYKSVLV 1122 Query 296 QDVL--LAPLLSAGIFGAKPLQSLKMCVEIVR 325 V+ + P+LS+GIFG K+ ++ +R Sbjct 1123 GGVVNYVVPVLSSGIFGV----DFKISIDAMR 1150 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6V3.1 Length: 3951 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6V4.1 Length: 3951 Range 1: 1799 to 2258 Score:161 bits(408), Expect:1e-39, Method:Compositional matrix adjust., Identities:145/506(29%), Positives:220/506(43%), Gaps:72/506(14%) Query 1432 MDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFF 1491 + +C F C VCL DSL Y +++ YK + G W Y++F F Sbjct 1799 LRYCADDFICRVCLHDKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILF 1853 Query 1492 Y--LLGLSAIMQAFFGYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFA 1541 + G I Y + + NS +L WF V + + F Sbjct 1854 VKPVAGFVIIC-----YCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMG 1899 Query 1542 SFYYVWKSY-----VHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRG 1596 + +Y W Y VH + C TC +C + R+ R E + +V G K+ +VY N G Sbjct 1900 AGFYFWLFYKIYIQVHHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYN 1959 Query 1597 FCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHL 1656 FCK HNW C NCD + +TF+S EVA +LS + KR + PT + +VVD + + ++L Sbjct 1960 FCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNL 2019 Query 1657 YFDKAG-QKTYERHPLSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESA------AK 1708 + A K + F D L +A K +L I DG C + AK Sbjct 2020 KYKAATPGKDSASSAVKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAK 2079 Query 1709 SASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVAT 1768 +A++YY+Q +C+PIL+LDQAL + VS + D S+ SV T Sbjct 2080 NAAIYYAQYLCKPILILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------T 2129 Query 1769 AHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGDSCNNF 1826 A G D +LS TKD ++ H+ D++ TGD N Sbjct 2130 AALNYKAGTLRDALLSI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNV 2174 Query 1827 MLTYN-KVENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSA 1885 + +Y +TPRD G I+ +A N +V + V VW + + LS+ K + SA Sbjct 2175 IPSYGIDTGKLTPRDRGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISA 2232 Query 1886 AKKNNIPFRLTCATTRQVVNVITTKI 1911 K+ + F +T + +QV+ T K+ Sbjct 2233 TVKSGVRFFITKSGAKQVIACHTQKL 2258 Range 2: 1027 to 1148 Score:49.7 bits(117), Expect:1e-05, Method:Compositional matrix adjust., Identities:39/129(30%), Positives:59/129(45%), Gaps:10/129(7%) Query 200 IVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCL 259 I K K IVNAAN H+ HG GVA A+ ++Y++++GP + Sbjct 1027 IAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 1083 Query 260 LSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQS 316 +C+ +VVGP + L AY+N V+ + P+LS GIFG Sbjct 1084 TPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV----D 1139 Query 317 LKMCVEIVR 325 KM ++ +R Sbjct 1140 FKMSIDAMR 1148 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 1694 to 2258 Score:161 bits(407), Expect:2e-39, Method:Compositional matrix adjust., Identities:165/611(27%), Positives:257/611(42%), Gaps:96/611(15%) Query 1351 IAKNSVKSVAKLCLDVCINYVK--SPKFSK-LFTIVMWLLLLSICLGSLTYVTAVLGVCL 1407 + +N S+ LC ++ + SP+F K L + + L S+ +Y T + V L Sbjct 1694 VVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVL 1753 Query 1408 SSLGV--------PSYCDGVRELYI-------------NSSNVTTMDFCQGYFPCSVCLS 1446 ++L + P G+R L + + +C F C VCL Sbjct 1754 ATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVLRYCADDFICRVCLH 1813 Query 1447 GLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFY--LLGLSAIMQAFF 1504 DSL Y +++ YK + G W Y++F F + G I Sbjct 1814 DKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILFVKPVAGFVIIC---- 1864 Query 1505 GYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSY-----V 1551 Y + + NS +L WF V + + F + +Y W Y V Sbjct 1865 -YCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMGAGFYFWLFYKIYIQV 1914 Query 1552 HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTF 1611 H + C TC +C + R+ R E + +V G K+ +VY N G FCK HNW C NCD + Sbjct 1915 HHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDY 1974 Query 1612 CAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAG-QKTYERHP 1670 +TF+S EVA +LS + KR + PT + +VVD + + ++L + A K Sbjct 1975 GHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSA 2034 Query 1671 LSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESA------AKSASVYYSQLMCQPIL 1723 + F D L +A K +L I DG C + AK+A++YY+Q +C+PIL Sbjct 2035 VKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPIL 2094 Query 1724 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 1783 +LDQAL + VS + D S+ SV TA G D +L Sbjct 2095 ILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------TAALNYKAGTLRDALL 2144 Query 1784 STFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGDSCNNFMLTYN-KVENMTPRD 1840 S TKD ++ H+ D++ TGD N + +Y +TPRD Sbjct 2145 SI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRD 2189 Query 1841 LGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1900 G I+ +A N +V + V VW + + LS+ K + SA K+ + F +T + Sbjct 2190 RGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGA 2247 Query 1901 RQVVNVITTKI 1911 +QV+ T K+ Sbjct 2248 KQVIACHTQKL 2258 Range 2: 1027 to 1148 Score:49.3 bits(116), Expect:2e-05, Method:Compositional matrix adjust., Identities:39/129(30%), Positives:59/129(45%), Gaps:10/129(7%) Query 200 IVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCL 259 I K K IVNAAN H+ HG GVA A+ ++Y++++GP + Sbjct 1027 IAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 1083 Query 260 LSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQS 316 +C+ +VVGP + L AY+N V+ + P+LS GIFG Sbjct 1084 TPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV----D 1139 Query 317 LKMCVEIVR 325 KM ++ +R Sbjct 1140 FKMSIDAMR 1148 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 1694 to 2258 Score:161 bits(407), Expect:2e-39, Method:Compositional matrix adjust., Identities:165/611(27%), Positives:257/611(42%), Gaps:96/611(15%) Query 1351 IAKNSVKSVAKLCLDVCINYVK--SPKFSK-LFTIVMWLLLLSICLGSLTYVTAVLGVCL 1407 + +N S+ LC ++ + SP+F K L + + L S+ +Y T + V L Sbjct 1694 VVRNITDSIKGLCGITRGHFERKMSPQFLKTLMFFLFYFLKASVKSVVASYKTVLCKVVL 1753 Query 1408 SSLGV--------PSYCDGVRELYI-------------NSSNVTTMDFCQGYFPCSVCLS 1446 ++L + P G+R L + + +C F C VCL Sbjct 1754 ATLLIVWFVYTSNPVMFTGIRVLDFLFEGSLCGPYKDYGKDSFDVLRYCADDFICRVCLH 1813 Query 1447 GLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLFTKFFY--LLGLSAIMQAFF 1504 DSL Y +++ YK + G W Y++F F + G I Sbjct 1814 DKDSLHLYKHAYSVE---QVYKDAAS--GFIFNWNWLYLVFLILFVKPVAGFVIIC---- 1864 Query 1505 GYFASHFISNS--------WLMWFIISIVQMAPVSAMVRMYIFFASFYYVWKSY-----V 1551 Y + + NS +L WF V + + F + +Y W Y V Sbjct 1865 -YCVKYLVLNSTVLQTGVCFLDWF---------VQTVFSHFNFMGAGFYFWLFYKIYIQV 1914 Query 1552 HIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKAHNWNCLNCDTF 1611 H + C TC +C + R+ R E + +V G K+ +VY N G FCK HNW C NCD + Sbjct 1915 HHILYCKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYNFCKRHNWYCRNCDDY 1974 Query 1612 CAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLYFDKAG-QKTYERHP 1670 +TF+S EVA +LS + KR + PT + +VVD + + ++L + A K Sbjct 1975 GHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLKYKAATPGKDSASSA 2034 Query 1671 LSHFVNLDNL-RANNTKGSLPINVIVFDGKSKCEESA------AKSASVYYSQLMCQPIL 1723 + F D L +A K +L I DG C + AK+A++YY+Q +C+PIL Sbjct 2035 VKCFSVTDFLKKAVFLKEALKCEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPIL 2094 Query 1724 LLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVL 1783 +LDQAL + VS + D S+ SV TA G D +L Sbjct 2095 ILDQALYEQLV-VEPVSKSVIDKVCSILSSIISVD---------TAALNYKAGTLRDALL 2144 Query 1784 STFVSAARQGVVDTDVDTKD--VIECLKLSHHSDIEVTGDSCNNFMLTYN-KVENMTPRD 1840 S TKD ++ H+ D++ TGD N + +Y +TPRD Sbjct 2145 SI---------------TKDEEAVDMAIFCHNHDVDYTGDGFTNVIPSYGIDTGKLTPRD 2189 Query 1841 LGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATT 1900 G I+ +A N +V + V VW + + LS+ K + SA K+ + F +T + Sbjct 2190 RGFLINADASIANLRVKNAPPV--VWKFSELIKLSDSCLKYLISATVKSGVRFFITKSGA 2247 Query 1901 RQVVNVITTKI 1911 +QV+ T K+ Sbjct 2248 KQVIACHTQKL 2258 Range 2: 1027 to 1148 Score:49.3 bits(116), Expect:2e-05, Method:Compositional matrix adjust., Identities:39/129(30%), Positives:59/129(45%), Gaps:10/129(7%) Query 200 IVKEAQSAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCL 259 I K K IVNAAN H+ HG GVA A+ ++Y++++GP + Sbjct 1027 IAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLV 1083 Query 260 LSGHNLAEKCL-HVVGPNLNAGEDVQLLKRAYENFNSQDVL--LAPLLSAGIFGAKPLQS 316 +C+ +VVGP + L AY+N V+ + P+LS GIFG Sbjct 1084 TPSFVKGIQCVNNVVGPRHGDNNLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGV----D 1139 Query 317 LKMCVEIVR 325 KM ++ +R Sbjct 1140 FKMSIDAMR 1148 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6V2.1 Length: 4017 Range 1: 1921 to 2364 Score:152 bits(384), Expect:1e-36, Method:Compositional matrix adjust., Identities:133/499(27%), Positives:219/499(43%), Gaps:73/499(14%) Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLG 1475 C+G + Y NSS + + C C CL+ D L + + +QVT +K D + Sbjct 1921 CNGAVQAYKNSSFIKSA-VCGNSILCKACLASYDELADF---QHLQVTWD-FKSDPLWNR 1975 Query 1476 LAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWF-------IISIVQMA 1528 L L+Y F F + ++ F YF S ++ N WL +F + +V Sbjct 1976 LVQ---LSYFAFLAVFG----NNYVRCFLMYFVSQYL-NLWLSYFGYVEYSWFLHVVNFE 2027 Query 1529 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 1588 +SA + + K HI+ C++ +C C + R TR+ +VNG ++ Y Sbjct 2028 SISAEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVY 2084 Query 1589 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 1648 V+ANG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V Sbjct 2085 VHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVE 2144 Query 1649 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 1699 +G Y +D +K + L + LD+ + GS NV Sbjct 2145 CSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV------ 2198 Query 1700 SKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 1759 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2199 --------RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2248 Query 1760 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVT 1819 + K L E + L+ STF A +H I +T Sbjct 2249 SECKNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILIT 2285 Query 1820 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQ 1877 S NNF + K ++ D+G C+ +A+ +NA+V S+VW +D+ +LS Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 1878 LRKQIRSAAKKNNIPFRLT 1896 +K + + + F LT Sbjct 2346 AQKVLVKTFVEEGVNFSLT 2364 Range 2: 1346 to 1483 Score:60.5 bits(145), Expect:8e-09, Method:Compositional matrix adjust., Identities:45/149(30%), Positives:71/149(47%), Gaps:12/149(8%) Query 208 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAE 267 +P VIVNAAN LKH GGVA A++ T G + S +Y+++N + G + Sbjct 1346 EPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHL 1405 Query 268 KCLHVVGP-NLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRT 326 L+ VGP N ++ + +L + +L PL+S GIF + SL+ ++ Sbjct 1406 SVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLK---- 1461 Query 327 QVYLAVNDKSLYDQIVLDYLDSLKPKVES 355 VND+ L V Y D + +E+ Sbjct 1462 ----TVNDRGLN---VFVYTDQERQTIEN 1483 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 1921 to 2364 Score:152 bits(383), Expect:1e-36, Method:Compositional matrix adjust., Identities:133/499(27%), Positives:219/499(43%), Gaps:73/499(14%) Query 1416 CDGVRELYINSSNVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLG 1475 C+G + Y NSS + + C C CL+ D L + + +QVT +K D + Sbjct 1921 CNGAVQAYKNSSFIKSA-VCGNSILCKACLASYDELADF---QHLQVTWD-FKSDPLWNR 1975 Query 1476 LAAEWLLAYMLFTKFFYLLGLSAIMQAFFGYFASHFISNSWLMWF-------IISIVQMA 1528 L L+Y F F + ++ F YF S ++ N WL +F + +V Sbjct 1976 LVQ---LSYFAFLAVFG----NNYVRCFLMYFVSQYL-NLWLSYFGYVEYSWFLHVVNFE 2027 Query 1529 PVSAMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFY 1588 +SA + + K HI+ C++ +C C + R TR+ +VNG ++ Y Sbjct 2028 SISAEFVIVVIVVKAVLALK---HIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVY 2084 Query 1589 VYANGGRGFCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVT 1648 V+ANG FCK HN+ C NCD++ +TFI DE+ RDLS K+ + TD+S V V Sbjct 2085 VHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVE 2144 Query 1649 VKNGALHLY---------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGK 1699 +G Y +D +K + L + LD+ + GS NV Sbjct 2145 CSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANV------ 2198 Query 1700 SKCEESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPM 1759 ++A VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + Sbjct 2199 --------RNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDV 2248 Query 1760 EKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVT 1819 + K L E + L+ STF A +H I +T Sbjct 2249 SECKNL-----DECYRACNLNVSFSTFEMAVNN------------------AHRFGILIT 2285 Query 1820 GDSCNNFMLTYNK--VENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQ 1877 S NNF + K ++ D+G C+ +A+ +NA+V S+VW +D+ +LS Sbjct 2286 DRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSST 2345 Query 1878 LRKQIRSAAKKNNIPFRLT 1896 +K + + + F LT Sbjct 2346 AQKVLVKTFVEEGVNFSLT 2364 Range 2: 1346 to 1483 Score:60.5 bits(145), Expect:8e-09, Method:Compositional matrix adjust., Identities:45/149(30%), Positives:71/149(47%), Gaps:12/149(8%) Query 208 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAE 267 +P VIVNAAN LKH GGVA A++ T G + S +Y+++N + G + Sbjct 1346 EPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHL 1405 Query 268 KCLHVVGP-NLNAGEDVQLLKRAYENFNSQDVLLAPLLSAGIFGAKPLQSLKMCVEIVRT 326 L+ VGP N ++ + +L + +L PL+S GIF + SL+ ++ Sbjct 1406 SVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLK---- 1461 Query 327 QVYLAVNDKSLYDQIVLDYLDSLKPKVES 355 VND+ L V Y D + +E+ Sbjct 1462 ----TVNDRGLN---VFVYTDQERQTIEN 1483 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 1904 to 2389 Score:144 bits(363), Expect:3e-34, Method:Compositional matrix adjust., Identities:142/547(26%), Positives:229/547(41%), Gaps:79/547(14%) Query 1368 INYVKSPKFSKLFTIVMWLLLLSICLGSLTYVTAVLGVCLSSLGVPSYCDGVRELYINSS 1427 +NYV+ L+ + +LLL I L Y+ + V + L C G + Y NSS Sbjct 1904 LNYVRQLNKPALWRYIKLVLLL-IALYHFFYLFVSIPV-VHKLA----CSGSVQAYSNSS 1957 Query 1428 NVTTMDFCQGYFPCSVCLSGLDSLDSYPALETIQVTISSYKLDLTFLGLAAEWLLAYMLF 1487 V + + C C CL+ D L + L+ YK D + + L+Y +F Sbjct 1958 FVKS-EVCGNSILCKACLASYDELADFDHLQVSW----DYKSDPLWNRVIQ---LSYFIF 2009 Query 1488 TKFFYLLGLSAIMQAFFGYFASHFISNSWLMWF-------IISIVQMAPVSAMVRMYIFF 1540 F + ++ YF S ++ N WL +F + +V +S + + Sbjct 2010 LAVFG----NNYVRCLLMYFVSQYL-NLWLSYFGYVKYSWFLHVVNFESISVEFVIIVVV 2064 Query 1541 ASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGVKRSFYVYANGGRGFCKA 1600 K HI C + +C C K R TR+ +VNG ++ YV+ANG CK Sbjct 2065 FKAVLALK---HIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGKLCKK 2121 Query 1601 HNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSAYVVDSVTVKNGALHLY--- 1657 HN+ C NCD++ TFI DE+ RDLS K+ + TD+S V V +G Y Sbjct 2122 HNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFYVGE 2181 Query 1658 ------FDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCEESAAKSAS 1711 +D +K + L LD+ N GS ++ ++ Sbjct 2182 EFTAYDYDVKHKKYSSQEVLKTMFLLDDFIVYNPSGS--------------SLASVRNVC 2227 Query 1712 VYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHS 1771 VY+SQL+ +PI +++ L+ D+ S + +F+A + +F+V + + K L Sbjct 2228 VYFSQLIGRPIKIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKNL-----E 2280 Query 1772 ELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDIEVTGDSCNNFMLTYN 1831 E K LD STF A +H I +T S NNF + Sbjct 2281 ECYKLCNLDVTFSTFEMAINN------------------AHRFGILITDRSFNNFWPSKI 2322 Query 1832 K--VENMTPRDLGACIDCNARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKN 1889 K ++ D+G C+ +A+ +NA+V S+VW +D+ +LS +K + + Sbjct 2323 KPGSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEE 2382 Query 1890 NIPFRLT 1896 + F LT Sbjct 2383 GVNFSLT 2389 Range 2: 1357 to 1474 Score:57.4 bits(137), Expect:7e-08, Method:Compositional matrix adjust., Identities:39/118(33%), Positives:57/118(48%), Gaps:1/118(0%) Query 208 KPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNLAE 267 +P V+VNAAN L+H GGVA A++ T G + S EY++ + + G + L Sbjct 1357 EPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHL 1416 Query 268 KCLHVVGPNLNAGEDVQLLKRAYENFNSQD-VLLAPLLSAGIFGAKPLQSLKMCVEIV 324 L+ VGP L Y+ D +L PL+S GIF K SL+ ++ V Sbjct 1417 SVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTV 1474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1342 to 1445 Score:53.5 bits(127), Expect:9e-07, Method:Compositional matrix adjust., Identities:41/115(36%), Positives:56/115(48%), Gaps:20/115(17%) Query 206 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 265 +A VI+NAAN+ + GGGV GAL K + + P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--A 1390 Query 266 AEKCLHVVGPNLNAGEDVQ---LLKRAYE------NFNSQDVLLAPLLSAGIFGA 311 A+ +H VGPN N +V+ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSG 1445 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1342 to 1445 Score:53.5 bits(127), Expect:1e-06, Method:Compositional matrix adjust., Identities:41/115(36%), Positives:56/115(48%), Gaps:20/115(17%) Query 206 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 265 +A VI+NAAN+ + GGGV GAL K + + P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--A 1390 Query 266 AEKCLHVVGPNLNAGEDVQ---LLKRAYE------NFNSQDVLLAPLLSAGIFGA 311 A+ +H VGPN N +V+ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSG 1445 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1342 to 1445 Score:53.1 bits(126), Expect:1e-06, Method:Compositional matrix adjust., Identities:40/115(35%), Positives:56/115(48%), Gaps:20/115(17%) Query 206 SAKPTVIVNAANTHLKHGGGVAGALNKATNGAMQNESDEYIRQNGPLTVGGSCLLSGHNL 265 +A VI+NAAN+ + GGGV GAL K + + P+ VG + L+ G Sbjct 1342 TATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQ---------PIEVGKARLVKG--A 1390 Query 266 AEKCLHVVGPNLNAGEDVQ---LLKRAYE------NFNSQDVLLAPLLSAGIFGA 311 A+ +H VGPN N +++ L AYE N N+ + PLLS GIF Sbjct 1391 AKHIIHAVGPNFNKVSEIEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSG 1445 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=N7-guanine methyltransferase; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8 [White bream virus (strain DF24/00)] Sequence ID: Q008X5.1 Length: 4555 Range 1: 1668 to 1811 Score:39.7 bits(91), Expect:0.015, Method:Compositional matrix adjust., Identities:40/144(28%), Positives:61/144(42%), Gaps:28/144(19%) Query 212 IVNAANTHLKHGGGVAGALNKA---------------TNGAMQN-ESDEYIRQ----NGP 251 IVNAAN L +G GV GA+ A T GA ES +++ Q N Sbjct 1668 IVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLESHQHVVQTIIKNNN 1727 Query 252 LTVGGSCLLSGHNLAEKCLH-----VVGPNLNAGEDVQLLKRA---YENFNSQDVLLAPL 303 T + L + + KC ++ N A +++ +A Y N + PL Sbjct 1728 STHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYKAIVDYAQLNKLTHIYLPL 1787 Query 304 LSAGIFGAKPLQSLKMCVEIVRTQ 327 AG +G KPL SL+ ++ +R + Sbjct 1788 FGAGAYGHKPLDSLEAFLDAMRNR 1811 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=N7-guanine methyltransferase; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 1668 to 1811 Score:39.3 bits(90), Expect:0.018, Method:Compositional matrix adjust., Identities:40/144(28%), Positives:61/144(42%), Gaps:28/144(19%) Query 212 IVNAANTHLKHGGGVAGALNKA---------------TNGAMQN-ESDEYIRQ----NGP 251 IVNAAN L +G GV GA+ A T GA ES +++ Q N Sbjct 1668 IVNAANKQLNNGTGVTGAIFAAHDKELKLTQAIKALPTYGASDKLESHQHVVQTIIKNNN 1727 Query 252 LTVGGSCLLSGHNLAEKCLH-----VVGPNLNAGEDVQLLKRA---YENFNSQDVLLAPL 303 T + L + + KC ++ N A +++ +A Y N + PL Sbjct 1728 STHAINILHAAAPIKVKCTSKNPEVLLAHNETAQSELKETYKAIVDYAQLNKLTHIYLPL 1787 Query 304 LSAGIFGAKPLQSLKMCVEIVRTQ 327 AG +G KPL SL+ ++ +R + Sbjct 1788 FGAGAYGHKPLDSLEAFLDAMRNR 1811