BLASTP 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 24,856 sequences; 7,889,814 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subun... 619 0.0 sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subun... 617 0.0 sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subun... 587 0.0 sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subun... 583 0.0 sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subun... 580 0.0 sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU O... 103 3e-24 sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU O... 93.6 6e-21 sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU O... 93.6 7e-21 tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU... 92.0 2e-20 sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU O... 92.0 2e-20 sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU O... 82.4 4e-17 tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding su... 50.1 1e-06 tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH OS... 44.7 6e-05 tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS... 44.3 7e-05 tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease... 43.9 8e-05 >sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=clpX PE=3 SV=1 Length=422 Score = 619 bits (1597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/417 (75%), Positives = 353/417 (85%), Gaps = 5/417 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE-VAPHR 59 MTDK K G KLLYCSFCGKSQHEVRKLIAGPSV+ICDEC++LCNDIIR+EI E V Sbjct 1 MTDK-KAGGEKLLYCSFCGKSQHEVRKLIAGPSVFICDECIELCNDIIRDEIAETVDAEG 59 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLI 118 R+ LPTP EI L+ YVIGQ QAK+ L+VAVYNHYKRLR+ VEL KSNILLI Sbjct 60 TRTTLPTPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLI 119 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV KAQ Sbjct 120 GPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQH 179 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHP Q+F+Q+ Sbjct 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFIQI 239 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI +R E GIGFGA +K++ K + E QVEPEDLIKF Sbjct 240 DTTNILFICGGAFDGLEKVIRNRTEK-IGIGFGAEIKSREGK-NVSESFRQVEPEDLIKF 297 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL EL EEALIQIL EPKNAL KQYQ LF++EGVDLE R AL A+ Sbjct 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 A+KA+ RKTGARGLRSI+E+ALLD MYDLP++E VEKVV+DE I+ ++PLL+Y + Sbjct 358 ARKAIRRKTGARGLRSILESALLDIMYDLPTLEGVEKVVVDEGTIEEGAQPLLMYAE 414 >sp|Q62JK8|CLPX_BURMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=clpX PE=3 SV=1 Length=423 Score = 617 bits (1592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/415 (73%), Positives = 358/415 (86%), Gaps = 4/415 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAPH 58 M DK+ S KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E V Sbjct 1 MADKKGSNSEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEAAAAGVEAS 60 Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 +S LP+P EIR+ LD YVIGQE+AKK+LAVAVYNHYKRL++ D + VEL KSNILLI Sbjct 61 LSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLI 120 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V+KAQR Sbjct 121 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQR 180 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKIS KSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F+QV Sbjct 181 GIVYIDEIDKISCKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDFIQV 240 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI+ R E +GIGFGATVK+K ++ + GE+L +VEPEDLIKF Sbjct 241 DTTNILFICGGAFDGLEKVITDRTEK-TGIGFGATVKSKQERDA-GEVLREVEPEDLIKF 298 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPE IGRLPVVATL +L E AL++IL EPKNAL KQYQ LF +E V+LE R +AL A+ Sbjct 299 GLIPELIGRLPVVATLGKLDEAALMKILVEPKNALVKQYQKLFAMERVELEIRPDALQAV 358 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+KA+ RKTGARGLRSI+E ALLD MY+LP+++ V KV+ID++VI+G KPLLIY Sbjct 359 ARKAIRRKTGARGLRSIIEQALLDVMYELPTLKGVSKVIIDDNVIEGDGKPLLIY 413 >sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=clpX PE=3 SV=1 Length=453 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/435 (71%), Positives = 350/435 (80%), Gaps = 30/435 (7%) Query 7 DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 + S K+LYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLC DII+EEI ++ +LPT Sbjct 8 NSSEKVLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCTDIIQEEIAKLPKEEGDESLPT 67 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRL------------RNGD----------- 103 PHEIR +LD YVIGQE AKK LAVAVYNHYKRL ++G Sbjct 68 PHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKESK 127 Query 104 -----TSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 158 +GVEL KSNILLIGPTGSGKTLLA+TLAR+LDVPF MADATTLTEAGYVGEDV Sbjct 128 LPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDV 187 Query 159 ENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 ENIIQKLLQ CDY+V+KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL+EGT Sbjct 188 ENIIQKLLQACDYNVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGT 247 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 +A+VPPQGGRKHP Q+FLQVDT+ ILFICGGAF GL+KVI R +GIGF ATV K Sbjct 248 MASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKVIQQRT-AKTGIGFNATVPGK- 305 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D+ +LL +VEPEDLIKFGLIPE IGRLPVVATL +L EEALIQIL EPKNAL KQYQ Sbjct 306 DERGVSDLLIEVEPEDLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQ 365 Query 339 ALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVI 398 AL +EG +LE R EAL AIAKKA+ARKTGARGLRSI+E +L+D MYDLPS+++V+KVVI Sbjct 366 ALLTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLKNVQKVVI 425 Query 399 DESVIDGQSKPLLIY 413 DES I KPLL+Y Sbjct 426 DESSIAEGGKPLLVY 440 >sp|Q7VXI6|CLPX_BORPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=clpX PE=3 SV=1 Length=434 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/425 (71%), Positives = 354/425 (83%), Gaps = 4/425 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M +K+ K+L+CSFC KSQHEVRKLIAGPSV+ICDEC+DLCNDIIREE + A Sbjct 1 MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAI 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-NGVELGKSNILLIG 119 RS LPTP EI+ LD YVIGQ K++LAVAVYNHYKR+R+G+ + VEL KSNI+LIG Sbjct 61 RSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLA+TLAR+L+VPF MADATTLTEAGYVGEDVENIIQKLLQ C+YDV+KAQR Sbjct 121 PTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRA 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 I+YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP Q+F+QVD Sbjct 181 IIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T+ ILFI GGAF GL+KVI R E SGIGF A V+AKS++ GEL ++ EPEDLIKFG Sbjct 241 TTNILFIVGGAFDGLEKVIRDRTEK-SGIGFSAAVRAKSERGV-GELFSEAEPEDLIKFG 298 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPE +GRLPVVATL+EL E L+QIL EPKNAL KQ+Q LF +EG +L+ R +AL AI+ Sbjct 299 LIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAIS 358 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 +KA+ RKTGARGLRSI+E ALLDTMYDLPS +V +VV++ + ++G KPLLIY E++ Sbjct 359 RKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVEGVGKPLLIYAD-ESE 417 Query 420 QASGE 424 ASGE Sbjct 418 AASGE 422 >sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=clpX PE=3 SV=1 Length=411 Score = 587 bits (1512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/417 (70%), Positives = 342/417 (82%), Gaps = 10/417 (2%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIRE----EIKEVA 56 MTDK KD L+CSFCGK + EV +LIAG YIC+EC++LC+ ++ E ++E A Sbjct 1 MTDKDKD-----LHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESA 55 Query 57 PHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNIL 116 E LPTPHEIR HLDDYVIGQ+ AKKVL+VAVYNHYKRLR SN VELGKSNIL Sbjct 56 VENEEK-LPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGKSNIL 114 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 LIGPTGSGKTLLA+TLAR L+VPF MADATTLTEAGYVGEDVEN++QKLLQ C+YD +KA Sbjct 115 LIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNCEYDTEKA 174 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 ++GI+YIDEIDKISRKS+ SITRDVSGEGVQQALLKLIEGT+A++PPQGGRKHPQQE + Sbjct 175 EKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMV 234 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 ++DTSKILFICGGAFAGLDK+I R +T + IGF A V+ + S EL QVEP+DL+ Sbjct 235 KLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLM 294 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLP++A L+EL E+ALIQIL +PKNAL KQYQALF LE V+L+F EAL Sbjct 295 KFGLIPEFIGRLPMIAPLSELDEDALIQILTKPKNALIKQYQALFGLEKVELDFTPEALK 354 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 A+AKKA+ RKTGARGLRSIVEA LLDTMYDLPS+E+++KV++DES I P L Y Sbjct 355 AMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDESTIVDNLAPKLEY 411 >sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=clpX PE=3 SV=1 Length=418 Score = 583 bits (1504), Expect = 0.0, Method: Compositional matrix adjust. Identities = 287/422 (68%), Positives = 350/422 (83%), Gaps = 4/422 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M+ K D S LYCSFCGKSQHEV KLIAGP+V+IC+ECV+LC DIIRE+ + Sbjct 1 MSTKSGD-SKNTLYCSFCGKSQHEVVKLIAGPTVFICNECVELCMDIIRED-NRTHLVKT 58 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 R +PTP EI LDDYVIGQ+ AK++L+VAV+NHYKRL + +N +E+ KSNI+L+GP Sbjct 59 RDGVPTPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGP 118 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGI Sbjct 119 TGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGI 178 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDE+DKISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 179 VYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDT 238 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + ILFICGGAFAGL+K+I+ R + GSGIGFGA V+ +++ + G +L +VEPEDL+KFGL Sbjct 239 TNILFICGGAFAGLEKIIAQRGK-GSGIGFGADVRDPTEQRT-GAILREVEPEDLLKFGL 296 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL +L E ALI+IL +PKNAL KQY LF +EGV L F ++AL +A Sbjct 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAA 356 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 +A+ RKTGARGLRSI+E LL+TM+DLP ++ VE+VVI+ V +G++ PL ++GK A+ Sbjct 357 RAIQRKTGARGLRSIMENILLETMFDLPGLDSVEEVVINGEVAEGRANPLFLHGKERAET 416 Query 421 AS 422 S Sbjct 417 GS 418 >sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpX PE=3 SV=1 Length=421 Score = 580 bits (1495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/416 (71%), Positives = 346/416 (83%), Gaps = 5/416 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K A + +PTP Sbjct 9 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSSA-LKSGDGVPTPR 67 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI N LDDYVIGQE AK+VL+VAV+NHYKRL N + +EL KSNILLIGPTG GKTLL Sbjct 68 EICNVLDDYVIGQEHAKRVLSVAVHNHYKRL-NHSSKTDIELAKSNILLIGPTGCGKTLL 126 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+DK Sbjct 127 AQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDK 186 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 I+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 187 ITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 246 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++I+ R G+ +GFGA VK DK GEL Q+EPEDL+KFGLIPEF+GRL Sbjct 247 GAFAGLDRIIAQR-NKGTAMGFGAAVKEDDDKGV-GELFKQLEPEDLLKFGLIPEFVGRL 304 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALI IL +PKNAL KQYQ LF+LE V L F ++AL AIAK+A+ RKTG Sbjct 305 PVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTG 364 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDG-QSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP M+ VE+VV++E +D +KPLLI+ + + AS Sbjct 365 ARGLRSIMEDILLDTMFDLPGMDSVEEVVVNEEAVDNPTAKPLLIHTDSKKETASA 420 >sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=hslU PE=3 SV=1 Length=435 Score = 103 bits (257), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 83/144 (58%), Gaps = 6/144 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + GD E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T ++ LARL PF +AT TE GYVG DVE II+ L + ++ R DE Sbjct 64 TEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMR-----DE 118 Query 186 IDKISRKSDNPSITRDVSGEGVQQ 209 + + KS + ++GEG ++ Sbjct 119 VKARAHKSAEDRVVAALAGEGARE 142 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/233 (33%), Positives = 107/233 (46%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 + GIV+IDEIDK++ ++D DVS EGVQ+ LL LIEGT + ++ Sbjct 241 ENGIVFIDEIDKVAARTDARG--GDVSREGVQRDLLPLIEGTTVST-----------KYG 287 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 288 PVRTDHILFIASGAF--------H----------------------------IAKPSDLL 311 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE I+IL E NALT+QY AL EGV ++F + + Sbjct 312 -----PELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQFIQDGIR 366 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A+ A GAR L +++E + + P E VV+D + ++ Sbjct 367 ALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSG-ETVVVDAAFVE 418 >sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=hslU PE=3 SV=1 Length=444 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 48/112 (43%), Positives = 72/112 (64%), Gaps = 4/112 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 7 TPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRH-EIHPKNILMIGPTGVGK 65 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 T +A LA+L + PF +AT TE GYVG DV+ II+ L +Y +++ + Sbjct 66 TEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDL---TEYSIKQTR 114 Score = 88.2 bits (217), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 103/235 (44%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ + + DVS +GVQ+ LL L+EGT + Sbjct 250 QNGIVFLDEIDKIAARQETGGA--DVSRQGVQRDLLPLVEGTTV-----------NTRYG 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 297 MVRTDHILFIASGAFH----------------------------------LAR--PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS E + IL E +L KQY AL E V LEF D+ + Sbjct 321 -----PELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIR 375 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A + GAR L +++E L + +D S E + ID + +D Q Sbjct 376 RLAELAFSVNERTENIGARRLYTVMEKLLEELSFD-ASANSGEVITIDAAYVDLQ 429 >sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=hslU PE=3 SV=1 Length=442 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ +AKK +A+A+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRS-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LARL + PF +AT TE GYVG DV+ II+ L Sbjct 64 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDL 103 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/235 (31%), Positives = 108/235 (46%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDK++ +S+ DVS +GVQ+ LL L+EGT + ++ Sbjct 248 QNGIVFLDEIDKVASRSEGQGA--DVSRQGVQRDLLPLVEGTTIST-----------KYG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 + T ILFI GAF H LA+ P DLI Sbjct 295 MIKTDHILFIASGAF--------H--------------------------LAK--PSDLI 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS E IL + L +QYQAL +GV LEF D+ + Sbjct 319 -----PELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLATDGVTLEFTDDGIR 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + ++ + ++K+++D +D + Sbjct 374 RLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRI-GLDKLLVDAPYVDAR 427 >tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=hslU PE=3 SV=1 Length=439 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 5/104 (5%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGV--ELGKSNILLIGPTGS 123 TP EI + LD +++GQ+ AK+ +A+A+ N ++R + G+ E+ NIL+IGPTG Sbjct 8 TPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQ---LPEGLREEVVPKNILMIGPTGC 64 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 GKT +A LA+L PF +AT TE GYVG DVE+I++ L++ Sbjct 65 GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVE 108 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 113/251 (45%), Gaps = 58/251 (23%) Query 169 CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 228 D + GIV++DEIDKI ++++ DVS EGVQ+ LL LIEGT + Sbjct 235 ADARLHAETHGIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVST------ 288 Query 229 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLA 288 ++ V T ILFI GAF V SD Sbjct 289 -----KYGPVKTDHILFIASGAFH---------------------VAKPSD--------- 313 Query 289 QVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 348 L+PE GRLP+ L LS E +IL EP+++L KQY AL E VDL Sbjct 314 -----------LLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDL 362 Query 349 EFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 F D+A+DA+A A GAR L +++E LL+ + + E V +D +++ Sbjct 363 HFTDDAVDAVAALAADINDRVENIGARRLATVLE-RLLEEISFAATDRAGETVTVDAALV 421 Query 404 DGQSKPLLIYG 414 + + PL G Sbjct 422 NDKVAPLAARG 432 >sp|P43773|HSLU_HAEIN ATP-dependent protease ATPase subunit HslU OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=hslU PE=1 SV=1 Length=444 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 93/207 (45%), Gaps = 61/207 (29%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EG+ + KH Sbjct 250 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 298 -VKTDHILFIASGAF-------------------------------------QVARPSDL 319 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L LS +IL EP +LT+QY+AL EGV++ F +A+ Sbjct 320 I-----PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 374 Query 356 DAIAKKAM-----ARKTGARGLRSIVE 377 IA+ A GAR L +++E Sbjct 375 KKIAEAAFRVNEKTENIGARRLHTVME 401 >sp|Q62F00|HSLU_BURMA ATP-dependent protease ATPase subunit HslU OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=hslU PE=3 SV=1 Length=447 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/102 (47%), Positives = 69/102 (68%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A LA+L D PF +AT TE GYVG DV++I++ L++ Sbjct 64 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIE 105 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 101/233 (43%), Gaps = 59/233 (25%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ ++ +VS +GVQ+ LL L+EGT ++ Sbjct 252 QNGIVFLDEIDKITSRNHEGG-GGEVSRQGVQRDLLPLVEGTTI-----------NTKYG 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DLI Sbjct 300 MVKTDHILFIASGAFH----------------------------------LAK--PSDLI 323 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L+ LS + IL +L KQYQAL E V LEF D+ + Sbjct 324 -----PELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQALLATEDVKLEFADDGIR 378 Query 357 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 +A+ A A GAR L +++E LL+ + + V ID + +D Sbjct 379 RLAEIAYAVNEKTENIGARRLYTVIE-KLLEEVSFAAGNHAGQSVTIDSAYVD 430 >tr|A1B8N4|A1B8N4_PARDP ATP-dependent Clp protease, ATP-binding subunit clpA OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=Pden_3812 PE=3 SV=1 Length=772 Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/315 (24%), Positives = 119/315 (38%), Gaps = 72/315 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V GQ+ A + L+ A+ LR + G N L GPTG GKT +A+ LA Sbjct 465 LKRLVFGQDAAIEALSSAIKLARAGLREPEKPIG------NYLFAGPTGVGKTEVAKQLA 518 Query 134 RLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 L V D + E GYVG D ++ V + ++ Sbjct 519 STLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTD-------GVDQHPHCVLL 571 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 242 +DEI+K + V LL++++ + GR QVD Sbjct 572 LDEIEK--------------AHPDVYNILLQVMDH--GKLTDHNGR--------QVDFRN 607 Query 243 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302 ++ I + + + GFG + D A+ I+ P Sbjct 608 VILI-------MTSNAGAADQAKAAFGFGRERREGEDTAA-------------IERTFTP 647 Query 303 EFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 362 EF RL V + LS E ++Q++++ Q +A GV +E EA D +A++ Sbjct 648 EFRNRLDAVISFAPLSREIIVQVVEK----FVLQLEAQLIDRGVHIELTAEAADWLAERG 703 Query 363 MARKTGARGLRSIVE 377 K GAR L +++ Sbjct 704 YDEKMGARPLGRVIQ 718 >tr|A5FVF9|A5FVF9_ACICJ ATP-dependent zinc metalloprotease FtsH OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=ftsH PE=3 SV=1 Length=641 Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A +VPF + E +VG + Q + Sbjct 193 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQG-----K 246 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 247 KNAPCIIFIDEIDAVGR 263 >tr|A1AZV8|A1AZV8_PARDP ATP-dependent zinc metalloprotease FtsH OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=ftsH PE=3 SV=1 Length=631 Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GP G+GKTLLA +A VPF + E +VG + Q +K Sbjct 191 LLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AKK 244 Query 176 AQRGIVYIDEIDKISR 191 + IV+IDEID + R Sbjct 245 SAPCIVFIDEIDAVGR 260 >tr|A0A0H2WJ72|A0A0H2WJ72_BURMA ATP-dependent zinc metalloprotease FtsH OS=Burkholderia mallei (strain ATCC 23344) OX=243160 GN=ftsH PE=3 SV=1 Length=628 Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG + Q + Sbjct 190 VLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 243 Query 175 KAQRGIVYIDEIDKISR 191 K IV+IDEID + R Sbjct 244 KHAPCIVFIDEIDAVGR 260 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1777979876 Database: proteomes.fasta Posted date: Mar 11, 2025 4:24 PM Number of letters in database: 7,889,814 Number of sequences in database: 24,856 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40