RID: 09KBDBNR016 Job Title:Protein Sequence Program: BLASTP Query: UNNAMED PROTEIN PRODUCT ID: lcl|Query_2935700(amino acid) Length: 263 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Radiation mu... NA 11787 533 533 100% 0.0 100.00 537 P11269.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31687 514 514 100% 0.0 97.34 537 P29167.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31688 513 513 100% 0.0 96.96 536 P29168.3 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 373193 507 507 100% 1e-179 95.06 536 Q27ID9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... AKR (endogen... NA 11791 505 505 100% 7e-179 95.06 537 P03336.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 536 536 100% 5e-178 100.00 1734 P11227.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... AKR (endogen... NA 11791 506 506 100% 7e-178 95.06 625 P0DOG8.1 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 517 517 100% 7e-171 97.34 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 510 510 100% 2e-168 95.06 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 508 508 100% 2e-167 95.06 1734 P03356.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... HoMuLV murin... NA 11799 448 448 100% 3e-156 94.30 540 P21435.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Duplan murin... NA 11794 446 446 100% 1e-155 95.06 529 P23090.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Cas-Br-E mur... NA 11792 446 446 100% 1e-155 93.92 536 P27460.3 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Moloney muri... NA 928306 446 446 100% 3e-155 93.54 538 P03332.4 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Cas-Br-E mur... NA 11792 446 446 100% 3e-154 93.92 624 P0DOH4.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11797 443 443 100% 3e-154 92.78 538 P26806.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11797 442 442 100% 6e-153 92.78 626 P0DOH5.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 11809 439 439 100% 6e-153 91.25 538 P03334.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Moloney muri... NA 882209 441 441 100% 2e-152 92.40 626 Q8UN02.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11796 432 432 100% 5e-150 92.78 539 P26807.3 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356664 432 432 83% 5e-150 95.87 536 Q2F7I9.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356663 432 432 83% 6e-150 95.87 536 Q2F7J2.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11796 432 432 100% 1e-148 92.78 627 P0DOH0.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 449 449 100% 1e-145 93.92 1733 P08361.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 449 449 100% 2e-145 93.54 1738 P03355.5 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11798 420 420 83% 2e-145 93.58 538 P26805.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 31691 417 417 83% 7e-145 92.20 468 P32594.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 446 446 100% 2e-144 92.78 1738 P26809.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11798 420 420 83% 4e-144 93.58 626 P0DOH6.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 436 436 100% 1e-140 92.78 1739 P26810.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 433 433 83% 8e-140 95.87 1733 Q2F7J0.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 433 433 83% 9e-140 95.87 1733 Q2F7J3.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 423 423 83% 6e-136 93.58 1738 P26808.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline leuke... NA 11768 331 331 100% 1e-110 66.16 506 P10262.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11778 328 328 100% 2e-110 65.78 459 P03340.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline leuke... NA 11768 331 331 100% 6e-110 66.16 580 P0DOH3.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11778 328 328 100% 2e-109 65.78 536 P0DOH2.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 332 332 100% 4e-103 66.16 1712 P10273.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Baboon endog... NA 11764 305 305 87% 2e-100 65.50 537 P03341.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Woolly monke... NA 11970 290 290 79% 1e-94 64.42 521 P03330.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gibbon ape l... NA 11840 289 289 79% 4e-94 63.94 520 P21416.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 306 306 85% 5e-94 65.92 1727 P10272.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Koala retrov... NA 394239 288 288 79% 9e-94 63.94 521 Q9TTC2.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 291 291 79% 6e-89 64.42 1687 P03359.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 290 290 79% 2e-88 63.94 1686 P21414.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 288 288 79% 4e-88 63.94 1687 Q9TTC1.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gardner-Arns... NA 11774 226 226 57% 1e-71 70.20 348 P03337.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Gardner-Arns... NA 11774 226 226 57% 9e-71 70.20 425 P0DOH1.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11777 218 218 54% 1e-68 71.33 340 P04322.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11777 218 218 54% 1e-67 71.33 414 P0DP83.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Finkel-Biski... NA 353765 191 191 42% 2e-58 85.45 310 P29175.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Snyder-Theil... NA 11780 157 157 38% 1e-45 73.74 297 P03338.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Snyder-Theil... NA 11780 157 157 38% 9e-45 73.74 371 P0DOG9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Avian spleen... NA 11899 112 112 38% 4e-28 52.94 313 P03342.1 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Abelson muri... NA 11788 45.4 45.4 8% 2e-04 95.00 235 P03333.3 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Radiation murine leukemia virus] Sequence ID: P11269.3 Length: 537 Range 1: 215 to 477 Score:533 bits(1374), Expect:0.0, Method:Compositional matrix adjust., Identities:263/263(100%), Positives:263/263(100%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 454 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRRQREMSKLL Sbjct 455 RAEDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Murine leukemia virus (strain BM5 ECO)] Sequence ID: P29167.3 Length: 537 Range 1: 215 to 477 Score:514 bits(1325), Expect:0.0, Method:Compositional matrix adjust., Identities:256/263(97%), Positives:257/263(97%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAP IGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 395 SFIWQSAPAIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RA DEQREKERDRRRQREMSKLL Sbjct 455 RAGDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Murine leukemia virus (strain DEF27)] Sequence ID: P29168.3 Length: 536 Range 1: 214 to 476 Score:513 bits(1322), Expect:0.0, Method:Compositional matrix adjust., Identities:255/263(97%), Positives:257/263(97%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 214 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGP+ESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPSESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 453 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRR REMSK L Sbjct 454 RAEDEQREKERDRRRHREMSKFL 476 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62] Sequence ID: Q27ID9.1 Length: 536 Range 1: 214 to 476 Score:507 bits(1306), Expect:1e-179, Method:Compositional matrix adjust., Identities:250/263(95%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVN+AFPLERPDWDYTT EGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRE EE EERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRREIEEKEERR 453 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQRE+ERDRRR REMSKLL Sbjct 454 RAEDEQRERERDRRRHREMSKLL 476 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [AKR (endogenous) murine leukemia virus] Sequence ID: P03336.3 Length: 537 Range 1: 215 to 477 Score:505 bits(1301), Expect:7e-179, Method:Compositional matrix adjust., Identities:250/263(95%), Positives:256/263(97%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEV++AFPLERPDWDYTT GRNHLVLYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAE+IFNKRETPEEREER RRETEE EERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAE+EQ+EKERDRRR REMSKLL Sbjct 455 RAEEEQKEKERDRRRHREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 215 to 477 Score:536 bits(1381), Expect:5e-178, Method:Compositional matrix adjust., Identities:263/263(100%), Positives:263/263(100%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 454 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRRQREMSKLL Sbjct 455 RAEDEQREKERDRRRQREMSKLL 477 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [AKR (endogenous) murine leukemia virus] Sequence ID: P0DOG8.1 Length: 625 Range 1: 303 to 565 Score:506 bits(1303), Expect:7e-178, Method:Compositional matrix adjust., Identities:250/263(95%), Positives:256/263(97%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 303 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 362 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEV++AFPLERPDWDYTT GRNHLVLYRQ Sbjct 363 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 422 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 423 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 482 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAE+IFNKRETPEEREER RRETEE EERR Sbjct 483 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 542 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAE+EQ+EKERDRRR REMSKLL Sbjct 543 RAEEEQKEKERDRRRHREMSKLL 565 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 215 to 477 Score:517 bits(1331), Expect:7e-171, Method:Compositional matrix adjust., Identities:256/263(97%), Positives:257/263(97%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAP IGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 395 SFIWQSAPAIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RA DEQREKERDRRRQREMSKLL Sbjct 455 RAGDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 214 to 476 Score:510 bits(1314), Expect:2e-168, Method:Compositional matrix adjust., Identities:250/263(95%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVN+AFPLERPDWDYTT EGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRE EE EERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRREIEEKEERR 453 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQRE+ERDRRR REMSKLL Sbjct 454 RAEDEQRERERDRRRHREMSKLL 476 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 215 to 477 Score:508 bits(1307), Expect:2e-167, Method:Compositional matrix adjust., Identities:250/263(95%), Positives:256/263(97%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEV++AFPLERPDWDYTT GRNHLVLYRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAE+IFNKRETPEEREER RRETEE EERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAE+EQ+EKERDRRR REMSKLL Sbjct 455 RAEEEQKEKERDRRRHREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [HoMuLV murine leukemia virus] Sequence ID: P21435.3 Length: 540 Range 1: 218 to 480 Score:448 bits(1153), Expect:3e-156, Method:Compositional matrix adjust., Identities:248/263(94%), Positives:254/263(96%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSS+DLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 218 PLRTGGNGQLQYWPFSSADLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 277 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNE+N AFPLERPDWDYTTP GRNHLVLYRQ Sbjct 278 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEINDAFPLERPDWDYTTPAGRNHLVLYRQ 337 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQ+AGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 338 LLLAGLQHAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 397 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAE+IFNKRETPEEREER RRETEE EERR Sbjct 398 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERIRRETEEKEERR 457 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAE+EQREKERDRRR REMSKLL Sbjct 458 RAENEQREKERDRRRHREMSKLL 480 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Duplan murine leukemia virus] Sequence ID: P23090.3 Length: 529 Range 1: 207 to 469 Score:446 bits(1148), Expect:1e-155, Method:Compositional matrix adjust., Identities:250/263(95%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 207 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 266 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDW+Y+TPEGRNHLVLYRQ Sbjct 267 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWNYSTPEGRNHLVLYRQ 326 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGL NAGRSPTNLAKVK ITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 327 LLLAGLHNAGRSPTNLAKVKRITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 386 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 387 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 446 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRR REMSK L Sbjct 447 RAEDEQREKERDRRRHREMSKFL 469 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Cas-Br-E murine leukemia virus] Sequence ID: P27460.3 Length: 536 Range 1: 214 to 476 Score:446 bits(1147), Expect:1e-155, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:251/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPNE+N AFPLERPDWDY T GRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER +RETEE EERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 453 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQ+EKERDRRR REMSKLL Sbjct 454 RAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03332.4 Length: 538 Range 1: 216 to 478 Score:446 bits(1146), Expect:3e-155, Method:Compositional matrix adjust., Identities:246/263(94%), Positives:252/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRAGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPNEV++AFPLERPDWDYTT GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLK+KTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRQREMSKLL 263 R EDEQ+EKERDRRR REMSKLL Sbjct 456 RTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Cas-Br-E murine leukemia virus] Sequence ID: P0DOH4.1 Length: 624 Range 1: 302 to 564 Score:446 bits(1147), Expect:3e-154, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:251/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 302 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 361 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPNE+N AFPLERPDWDY T GRNHLVLYRQ Sbjct 362 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 421 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 422 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 481 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER +RETEE EERR Sbjct 482 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 541 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQ+EKERDRRR REMSKLL Sbjct 542 RAEDEQKEKERDRRRHREMSKLL 564 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26806.3 Length: 538 Range 1: 216 to 478 Score:443 bits(1139), Expect:3e-154, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAED QREKERDRRR REMSKLL Sbjct 456 RAEDVQREKERDRRRHREMSKLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P0DOH5.1 Length: 626 Range 1: 304 to 566 Score:442 bits(1138), Expect:6e-153, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 304 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 363 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 423 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 483 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 484 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 543 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAED QREKERDRRR REMSKLL Sbjct 544 RAEDVQREKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Moloney murine sarcoma virus] Sequence ID: P03334.3 Length: 538 Range 1: 216 to 478 Score:439 bits(1130), Expect:6e-153, Method:Compositional matrix adjust., Identities:240/263(91%), Positives:251/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRTGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPNEV++AFPLERPDW+YTT GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LL+AGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 336 LLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDL++KTL DLVREAE+IFNKRETPEEREER RRE EE EERR Sbjct 396 SFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNKRETPEEREERIRREREEKEERR 455 Query 241 RAEDEQREKERDRRRQREMSKLL 263 R EDEQ+EKERDRRR REMS+LL Sbjct 456 RTEDEQKEKERDRRRHREMSRLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80; Contains: RecName: Full=Nextended-MA-p12; Contains: RecName: Full=CA-NC [Moloney murine leukemia virus neuropathogenic variant ts1-92b] Sequence ID: Q8UN02.2 Length: 626 Range 1: 304 to 566 Score:441 bits(1135), Expect:2e-152, Method:Compositional matrix adjust., Identities:243/263(92%), Positives:252/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 304 PLRTGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 363 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPNEV++AFPLERPDW+YTT GRNHLV YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVQYRQ 423 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 483 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLK+KTL DLVREAE+IFNKRETPEEREER RRETEE EERR Sbjct 484 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAERIFNKRETPEEREERIRRETEEKEERR 543 Query 241 RAEDEQREKERDRRRQREMSKLL 263 R EDEQ+EKERDRRR REMSKLL Sbjct 544 RTEDEQKEKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26807.3 Length: 539 Range 1: 217 to 479 Score:432 bits(1111), Expect:5e-150, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 217 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 276 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 277 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 336 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 337 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 396 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 397 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 456 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRR REMSKLL Sbjct 457 RAEDEQREKERDRRRHREMSKLL 479 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7I9.1 Length: 536 Range 1: 214 to 431 Score:432 bits(1111), Expect:5e-150, Method:Compositional matrix adjust., Identities:209/218(96%), Positives:213/218(97%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVN+AFPLERPDW YTT EGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J2.1 Length: 536 Range 1: 214 to 431 Score:432 bits(1110), Expect:6e-150, Method:Compositional matrix adjust., Identities:209/218(96%), Positives:213/218(97%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEA KAVRGNDGRPTQLPNEVN+AFPLERPDWDYTT EGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P0DOH0.1 Length: 627 Range 1: 305 to 567 Score:432 bits(1110), Expect:1e-148, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 305 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 364 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 365 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 424 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 425 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 484 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 485 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 544 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRR REMSKLL Sbjct 545 RAEDEQREKERDRRRHREMSKLL 567 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 214 to 476 Score:449 bits(1155), Expect:1e-145, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:251/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPNE+N AFPLERPDWDY T GRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER +RETEE EERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 453 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQ+EKERDRRR REMSKLL Sbjct 454 RAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 216 to 478 Score:449 bits(1154), Expect:2e-145, Method:Compositional matrix adjust., Identities:246/263(94%), Positives:252/263(95%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRAGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPNEV++AFPLERPDWDYTT GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLK+KTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRQREMSKLL 263 R EDEQ+EKERDRRR REMSKLL Sbjct 456 RTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26805.3 Length: 538 Range 1: 216 to 433 Score:420 bits(1080), Expect:2e-145, Method:Compositional matrix adjust., Identities:204/218(94%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ QYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLK+KTL DLVREAEKIFNK Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNK 433 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Moloney murine sarcoma virus (strain TS110)] Sequence ID: P32594.3 Length: 468 Range 1: 216 to 433 Score:417 bits(1071), Expect:7e-145, Method:Compositional matrix adjust., Identities:201/218(92%), Positives:211/218(96%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQLQYWPFSSSDLYNWK+NNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRTGGNGQLQYWPFSSSDLYNWKSNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPNEV++AFPLERPDW+YTT GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LL+AGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 336 LLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDL++KTL DLVREAE+IFNK Sbjct 396 SFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNK 433 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 216 to 478 Score:446 bits(1147), Expect:2e-144, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAED QREKERDRRR REMSKLL Sbjct 456 RAEDVQREKERDRRRHREMSKLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P0DOH6.1 Length: 626 Range 1: 304 to 521 Score:420 bits(1080), Expect:4e-144, Method:Compositional matrix adjust., Identities:204/218(94%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ QYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 304 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 363 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 423 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 483 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLK+KTL DLVREAEKIFNK Sbjct 484 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNK 521 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 217 to 479 Score:436 bits(1121), Expect:1e-140, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 217 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 276 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 277 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 336 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 337 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 396 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 397 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 456 Query 241 RAEDEQREKERDRRRQREMSKLL 263 RAEDEQREKERDRRR REMSKLL Sbjct 457 RAEDEQREKERDRRRHREMSKLL 479 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 214 to 431 Score:433 bits(1114), Expect:8e-140, Method:Compositional matrix adjust., Identities:209/218(96%), Positives:213/218(97%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVN+AFPLERPDW YTT EGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 214 to 431 Score:433 bits(1114), Expect:9e-140, Method:Compositional matrix adjust., Identities:209/218(96%), Positives:213/218(97%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR+GG+GQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEA KAVRGNDGRPTQLPNEVN+AFPLERPDWDYTT EGRNHLVLYRQ Sbjct 274 TLLTGEEKQRVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 216 to 433 Score:423 bits(1087), Expect:6e-136, Method:Compositional matrix adjust., Identities:204/218(94%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ QYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVL THQPTWDDCQQLLG Sbjct 216 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+VSM Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLK+KTL DLVREAEKIFNK Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNK 433 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Feline leukemia virus] Sequence ID: P10262.3 Length: 506 Range 1: 198 to 445 Score:331 bits(848), Expect:1e-110, Method:Compositional matrix adjust., Identities:174/263(66%), Positives:205/263(77%), Gaps:15/263(5%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPED GQ SV + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 427 Query 241 RAEDEQREKERDRRRQREMSKLL 263 QR++ERD++R +EM+K+L Sbjct 428 -----QRQEERDKKRHKEMTKVL 445 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P03340.2 Length: 459 Range 1: 198 to 445 Score:328 bits(842), Expect:2e-110, Method:Compositional matrix adjust., Identities:173/263(66%), Positives:204/263(77%), Gaps:15/263(5%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK +NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLT EE+QRVLLEARK V G DGRPTQLPN ++ AFPL RP+WD+ TP GR HL LYRQ Sbjct 258 ALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGL+ A R PTNLA+VK + QG E+P++FLERLKEAYR YTPYDPED GQ SV + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 427 Query 241 RAEDEQREKERDRRRQREMSKLL 263 QR++ERD++R +EM+K+L Sbjct 428 -----QRQEERDKKRHKEMTKVL 445 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline leukemia virus] Sequence ID: P0DOH3.1 Length: 580 Range 1: 272 to 519 Score:331 bits(849), Expect:6e-110, Method:Compositional matrix adjust., Identities:174/263(66%), Positives:205/263(77%), Gaps:15/263(5%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 391 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPED GQ SV + Sbjct 392 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 451 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER Sbjct 452 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 501 Query 241 RAEDEQREKERDRRRQREMSKLL 263 QR++ERD++R +EM+K+L Sbjct 502 -----QRQEERDKKRHKEMTKVL 519 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P0DOH2.1 Length: 536 Range 1: 275 to 522 Score:328 bits(842), Expect:2e-109, Method:Compositional matrix adjust., Identities:173/263(66%), Positives:204/263(77%), Gaps:15/263(5%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK +NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 275 PLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 334 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLT EE+QRVLLEARK V G DGRPTQLPN ++ AFPL RP+WD+ TP GR HL LYRQ Sbjct 335 ALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGREHLRLYRQ 394 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGL+ A R PTNLA+VK + QG E+P++FLERLKEAYR YTPYDPED GQ SV + Sbjct 395 LLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDPGQAASVIL 454 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER Sbjct 455 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 504 Query 241 RAEDEQREKERDRRRQREMSKLL 263 QR++ERD++R +EM+K+L Sbjct 505 -----QRQEERDKKRHKEMTKVL 522 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 198 to 445 Score:332 bits(850), Expect:4e-103, Method:Compositional matrix adjust., Identities:174/263(66%), Positives:205/263(77%), Gaps:15/263(5%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPED GQ SV + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 427 Query 241 RAEDEQREKERDRRRQREMSKLL 263 QR++ERD++R +EM+K+L Sbjct 428 -----QRQEERDKKRHKEMTKVL 445 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Baboon endogenous virus strain M7] Sequence ID: P03341.4 Length: 537 Range 1: 227 to 454 Score:305 bits(782), Expect:2e-100, Method:Compositional matrix adjust., Identities:150/229(66%), Positives:181/229(79%), Gaps:1/229(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR N +QYWPFS+SDLYNWK +NPSFS+DP LT+LIES+L THQPTWDDCQQLL Sbjct 227 PLRTV-NRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQ 285 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLT EE+QRVLLEARK V G G PTQLPNE++ FPL RPDWDY T GR L +YRQ Sbjct 286 VLLTTEERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQ 345 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 180 LLAGL+ AG+ PTNLAKV+ ITQG +ESP+AF+ERL E +R YTP+DPE + +V+M Sbjct 346 ALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAM 405 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERF 229 SFI Q+A DI KL+RL+ +++ L++LVREAEK++NKRETPEERE R Sbjct 406 SFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARL 454 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Woolly monkey sarcoma virus] Sequence ID: P03330.4 Length: 521 Range 1: 213 to 420 Score:290 bits(743), Expect:1e-94, Method:Compositional matrix adjust., Identities:134/208(64%), Positives:169/208(81%), Gaps:0/208(0%) Query 10 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 69 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 213 LQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERE 272 Query 70 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 129 R+LLEARK V G++G PTQL N +N AFPL RP WDY T GR L++YR+ L+AGL+ A Sbjct 273 RILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRERLLVYRRTLVAGLKGA 332 Query 130 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 189 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP + GQ+ +V+M+FI QSAPD Sbjct 333 ARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEGQQAAVAMAFIGQSAPD 392 Query 190 IGRKLERLEDLKSKTLRDLVREAEKIFN 217 I +KL+RLE L+ +L+DLVREAEK+++ Sbjct 393 IKKKLQRLEGLQDYSLQDLVREAEKVYH 420 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Gibbon ape leukemia virus] Sequence ID: P21416.3 Length: 520 Range 1: 212 to 419 Score:289 bits(739), Expect:4e-94, Method:Compositional matrix adjust., Identities:133/208(64%), Positives:168/208(80%), Gaps:0/208(0%) Query 10 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 69 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 212 LQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERE 271 Query 70 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 129 R+LLEARK V G++G PTQL N +N AFPL RP WDY T GR L++YR+ L+AGL+ A Sbjct 272 RILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRRTLVAGLKGA 331 Query 130 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 189 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ +V+M+FI QSAPD Sbjct 332 ARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSAPD 391 Query 190 IGRKLERLEDLKSKTLRDLVREAEKIFN 217 I +KL+RLE L+ +L+DLV+EAEK+++ Sbjct 392 IKKKLQRLEGLQDYSLQDLVKEAEKVYH 419 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 232 to 454 Score:306 bits(783), Expect:5e-94, Method:Compositional matrix adjust., Identities:147/223(66%), Positives:178/223(79%), Gaps:0/223(0%) Query 7 NGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGE 66 N +QYWPFS+SDLYNWK +NPSFS+DP LT+LIES+L THQPTWDDCQQLL LLT E Sbjct 232 NRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQVLLTTE 291 Query 67 EKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGL 126 E+QRVLLEARK V G G PTQLPNE++ FPL RPDWDY T GR L +YRQ LLAGL Sbjct 292 ERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQALLAGL 351 Query 127 QNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQS 186 + AG+ PTNLAKV+ ITQG +ESP+AF+ERL E +R YTP+DPE + +V+MSFI Q+ Sbjct 352 KGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAMSFIDQA 411 Query 187 APDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERF 229 A DI KL+RL+ +++ L++LVREAEK++NKRETPEERE R Sbjct 412 ALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARL 454 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Koala retrovirus] Sequence ID: Q9TTC2.3 Length: 521 Range 1: 213 to 420 Score:288 bits(737), Expect:9e-94, Method:Compositional matrix adjust., Identities:133/208(64%), Positives:168/208(80%), Gaps:0/208(0%) Query 10 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 69 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 213 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 272 Query 70 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 129 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 273 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 332 Query 130 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 189 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ +V+MSFI QSAPD Sbjct 333 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 392 Query 190 IGRKLERLEDLKSKTLRDLVREAEKIFN 217 I +KL+RLE L+ +L+DL++EAEK+++ Sbjct 393 IKKKLQRLEGLQDHSLQDLIKEAEKVYH 420 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 213 to 420 Score:291 bits(745), Expect:6e-89, Method:Compositional matrix adjust., Identities:134/208(64%), Positives:169/208(81%), Gaps:0/208(0%) Query 10 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 69 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 213 LQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERE 272 Query 70 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 129 R+LLEARK V G++G PTQL N +N AFPL RP WDY T GR L++YR+ L+AGL+ A Sbjct 273 RILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRERLLVYRRTLVAGLKGA 332 Query 130 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 189 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP + GQ+ +V+M+FI QSAPD Sbjct 333 ARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEGQQAAVAMAFIGQSAPD 392 Query 190 IGRKLERLEDLKSKTLRDLVREAEKIFN 217 I +KL+RLE L+ +L+DLVREAEK+++ Sbjct 393 IKKKLQRLEGLQDYSLQDLVREAEKVYH 420 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 212 to 419 Score:290 bits(741), Expect:2e-88, Method:Compositional matrix adjust., Identities:133/208(64%), Positives:168/208(80%), Gaps:0/208(0%) Query 10 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 69 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 212 LQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERE 271 Query 70 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 129 R+LLEARK V G++G PTQL N +N AFPL RP WDY T GR L++YR+ L+AGL+ A Sbjct 272 RILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRRTLVAGLKGA 331 Query 130 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 189 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ +V+M+FI QSAPD Sbjct 332 ARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSAPD 391 Query 190 IGRKLERLEDLKSKTLRDLVREAEKIFN 217 I +KL+RLE L+ +L+DLV+EAEK+++ Sbjct 392 IKKKLQRLEGLQDYSLQDLVKEAEKVYH 419 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 213 to 420 Score:288 bits(738), Expect:4e-88, Method:Compositional matrix adjust., Identities:133/208(64%), Positives:168/208(80%), Gaps:0/208(0%) Query 10 LQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQ 69 LQYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL L T EE++ Sbjct 213 LQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQVLFTTEERE 272 Query 70 RVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQLLLAGLQNA 129 R+LLEARK V G +G PTQL N +N AFPL RP WD+ T EGR L++YR+ L+AGL+ A Sbjct 273 RILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRRTLVAGLKGA 332 Query 130 GRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSMSFIWQSAPD 189 R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ +V+MSFI QSAPD Sbjct 333 ARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAMSFIGQSAPD 392 Query 190 IGRKLERLEDLKSKTLRDLVREAEKIFN 217 I +KL+RLE L+ +L+DL++EAEK+++ Sbjct 393 IKKKLQRLEGLQDHSLQDLIKEAEKVYH 420 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Gardner-Arnstein feline sarcoma virus] Sequence ID: P03337.2 Length: 348 Range 1: 198 to 348 Score:226 bits(576), Expect:1e-71, Method:Compositional matrix adjust., Identities:106/151(70%), Positives:122/151(80%), Gaps:0/151(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPS 151 LLLAGL+ A R PTNLA+VK + QG E+P+ Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 348 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Gardner-Arnstein feline sarcoma virus] Sequence ID: P0DOH1.1 Length: 425 Range 1: 275 to 425 Score:226 bits(576), Expect:9e-71, Method:Compositional matrix adjust., Identities:106/151(70%), Positives:122/151(80%), Gaps:0/151(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 275 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 334 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 335 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 394 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPS 151 LLLAGL+ A R PTNLA+VK + QG E+P+ Sbjct 395 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 425 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P04322.2 Length: 340 Range 1: 198 to 340 Score:218 bits(554), Expect:1e-68, Method:Compositional matrix adjust., Identities:102/143(71%), Positives:116/143(81%), Gaps:0/143(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGIT 143 LLLAGL+ A R PTNLA+VK + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVV 340 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P0DP83.1 Length: 414 Range 1: 272 to 414 Score:218 bits(554), Expect:1e-67, Method:Compositional matrix adjust., Identities:102/143(71%), Positives:116/143(81%), Gaps:0/143(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 120 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL RP+WD+ TP GR HL LYRQ Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 391 Query 121 LLLAGLQNAGRSPTNLAKVKGIT 143 LLLAGL+ A R PTNLA+VK + Sbjct 392 LLLAGLRGAARRPTNLAQVKQVV 414 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Finkel-Biskis-Jinkins murine sarcoma virus] Sequence ID: P29175.3 Length: 310 Range 1: 215 to 310 Score:191 bits(484), Expect:2e-58, Method:Compositional matrix adjust., Identities:94/110(85%), Positives:96/110(87%), Gaps:14/110(12%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLRLGGNGQ KNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG Sbjct 215 PLRLGGNGQ--------------KNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 260 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPE 110 TLLTGEEKQRVLLEARKAVRGNDGRPTQ+PNEVN+AFPLERPDWDYTTPE Sbjct 261 TLLTGEEKQRVLLEARKAVRGNDGRPTQMPNEVNAAFPLERPDWDYTTPE 310 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Snyder-Theilen feline sarcoma virus] Sequence ID: P03338.2 Length: 297 Range 1: 198 to 296 Score:157 bits(398), Expect:1e-45, Method:Compositional matrix adjust., Identities:73/99(74%), Positives:82/99(82%), Gaps:0/99(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPL 99 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPL 296 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Snyder-Theilen feline sarcoma virus] Sequence ID: P0DOG9.1 Length: 371 Range 1: 272 to 370 Score:157 bits(397), Expect:9e-45, Method:Compositional matrix adjust., Identities:73/99(74%), Positives:82/99(82%), Gaps:0/99(0%) Query 1 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 60 PLR G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L THQPTWDDCQQLL Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPL 99 LLTGEE+QRVLLEARK V G DGRPTQLPN ++ FPL Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPL 370 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Avian spleen necrosis virus] Sequence ID: P03342.1 Length: 313 Range 1: 209 to 310 Score:112 bits(280), Expect:4e-28, Method:Compositional matrix adjust., Identities:54/102(53%), Positives:69/102(67%), Gaps:1/102(0%) Query 4 LGGNGQLQYWPFSSSDLYNWKNNNPS-FSEDPGKLTALIESVLTTHQPTWDDCQQLLGTL 62 + G Y PF++SDLYNWKN NPS FS+ P ++ +L+ESV THQPTWDDCQQLL TL Sbjct 209 MTGRPMRTYVPFTTSDLYNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDDCQQLLRTL 268 Query 63 LTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDW 104 T EE++RV E+R+ VR + G E+ + FP RPDW Sbjct 269 FTTEERERVRTESRREVRNDQGVQVTDEREIEAQFPATRPDW 310 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; Contains: RecName: Full=Capsid protein p30; Short=CA [Abelson murine leukemia virus] Sequence ID: P03333.3 Length: 235 Range 1: 216 to 235 Score:45.4 bits(106), Expect:2e-04, Method:Compositional matrix adjust., Identities:19/20(95%), Positives:19/20(95%), Gaps:0/20(0%) Query 1 PLRLGGNGQLQYWPFSSSDL 20 PLR GGNGQLQYWPFSSSDL Sbjct 216 PLRTGGNGQLQYWPFSSSDL 235