BLASTN 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: lm_genome.fasta 12 sequences; 2,945,078 total letters Query= X73124 X73124.1 B.subtilis genomic region (325 to 333) Length=972 Score E Sequences producing significant alignments: (Bits) Value embl|AL591982|AL591982 Listeria monocytogenes strain EGD, compl... 488 3e-138 > embl|AL591982|AL591982 Listeria monocytogenes strain EGD, complete genome, segment 10/12 Length=295050 Score = 488 bits (540), Expect = 3e-138 Identities = 694/969 (72%), Gaps = 12/969 (1%) Strand=Plus/Minus Query 7 GATTTATTTTCAACAGTGCAAGAAAAAGTAGCTGGAAAAGACGTTAAAATTGTATTTCCT 66 ||||||||| | ||| | ||| | |||| |||| ||| |||| || ||| | ||| Sbjct 83794 GATTTATTTACTACAATCAAAGGACAAGTTACTGGGAAAAACGTGCGCATCGTACTACCT 83735 Query 67 GAAGGCTTAGACGAGCGTATTTTAGAAGCGGTCAGCAAGCTTGCAGGAAACAAAGTGC-T 125 ||||| ||| || |||||| | | ||| | | ||| | |||| || ||| | | Sbjct 83734 GAAGGAACAGATGAACGTATTGTTGGAGCAG-CTGCACGTCTGCAAAAAGAAAATATCGT 83676 Query 126 GAATCCGATTGTGATCGGCAATGAAAATGAGATCCAAGCAAAAGCAAAAGAA-TTGAACC 184 || || || | | || ||| || ||||| ||||||||||||||||| ||| Sbjct 83675 AAAACCAATCTTACTTGGAAATAAAGCGGAGATTGAAGCAAAAGCAAAAGAAATTGGTGT 83616 Query 185 TTACGCTG--GGCGGCGTTAAGATTTATGATCCTCATACATATGAAGGCATGGAAGACCT 242 || | || || || || || |||| ||| || || | | || || | Sbjct 83615 TTCTGTTGAAGGAATCGCTA---TTCATGAACCTGCGACCGATCCACTTTTTGATGAATT 83559 Query 243 TGTACAAGCATTCGTAGAACGCCGCAAAGGCAAAGCGACTGAAGAACAGGCTCGTAAAGC 302 || ||||| |||||||| || ||||| ||||| || |||||| || |||||| Sbjct 83558 AGTGGCTGCATTTGTAGAACGTCGTAAAGGTAAAGCAACAGAAGAAGCTGCGCGTAAAAT 83499 Query 303 ATTATTAGACGAGAACTACTTCGGTACAATGCTGGTGTATAAAGGACTTGCAGACGGACT 362 || | || ||||| ||||| |||||||| || || | |||| ||||| || || Sbjct 83498 GCTAGTTGATCCAAACTATTTCGGCACAATGCTTGTATACACAGGAAAAGCAGAAGGTCT 83439 Query 363 TGTAAGCGGAGCTGCTCACTCAACTGCTGACACTGTCCGCCCGGCTCTTCAAATCATCAA 422 |||||| || || |||||||| |||| |||||||| || || || || ||||| || || Sbjct 83438 TGTAAGTGGCGCGGCTCACTCTACTGGCGACACTGTACGTCCAGCACTACAAATTATTAA 83379 Query 423 AACAAAAGAAGGCGTGAAAAAGACTTCAGGCGTGTTCATCATGGCTCGCGGAGAAGAGCA 482 ||||||| |||||| | || | | |||| | | || |||| |||||| ||||| | Sbjct 83378 AACAAAACCAGGCGTAAGTAAAGTTGCCGGCGCGATGATTATGGTTCGCGGTGAAGAACG 83319 Query 483 ATACGTATTCGCAGATTGCGCGATCAACATTGCACCTGA--CAGCCAAGATCTTGCCGAG 540 ||| ||||| ||| || ||||| |||||||| | |||| ||| | || || Sbjct 83318 CTACTTATTCAGTGATGTAGCTATCAATATTGCACCAGTTGCAGC--AGACTTAGCGGAA 83261 Query 541 ATTGCGATCGAAAGTGCCAATACGGCAAAAATGTTCGACATTGAGCCTCGCGTGGCAATG 600 | |||||| | ||||| | || ||| |||| |||| |||||| || || || |||||| Sbjct 83260 AATGCGATTGTTAGTGCGGAAACAGCAGAAATCTTCGGCATTGACCCACGTGTTGCAATG 83201 Query 601 CTCAGCTTCTCTACAAAAGGCTCAGCAAAATCTGATGAAACAGAAAAAGTAGCGGATGCA 660 || || |||||||||||||| || |||||||| ||||||||||||||||| | || ||| Sbjct 83200 CTAAGTTTCTCTACAAAAGGTTCTGCAAAATCCGATGAAACAGAAAAAGTCGTAGAAGCA 83141 Query 661 GTGAAAATCGCGAAAGAAAAAGCGCCTGAACTGACACTTGACGGCGAATTCCAATTTGAT 720 | || ||||||||||| |||||| | || ||||| || |||||||||||||| Sbjct 83140 ACTGCTCTTGCAAAAGAAAAAGCACCTGAATTAACGCTTGATGGTGAATTCCAATTTGAC 83081 Query 721 GCTGCATTTGTTCCATCTGTAGCTGAGAAAAAAGCGCCGGATTCCGAGATCAAAGGGGAC 780 || |||||||||||| |||| || ||||||||||| || | |||| |||||||||||| Sbjct 83080 GCAGCATTTGTTCCAACTGTTGCGGAGAAAAAAGCACCAGGATCCGTTATCAAAGGGGAC 83021 Query 781 GCTAACGTATTCGTATTCCCAAGTCTTGAAGCAGGAAACATCGGCTATAAAATCGCTCAG 840 || || ||||| | |||||||| | |||||||||||||| ||||| ||||| || || Sbjct 83020 GCAAATGTATTTATCTTCCCAAGCTTAGAAGCAGGAAACATTGGCTACAAAATTGCCCAA 82961 Query 841 CGTTTGGGCAACTTTGAAGCGGTAGGACCAATCCTGCAAGGTTTAAATATGCCTGTAAAC 900 ||||| || ||||||||||| || |||||||| | ||||| |||||| || || || Sbjct 82960 CGTTTAGGTAACTTTGAAGCAGTTGGACCAATTTTACAAGGCTTAAATGCACCAGTTAAT 82901 Query 901 GACCTTTCAAGAGGATGTAACGCTGAAGATGTTTACAATCTCGCATTAATTACAGCGGCG 960 || | || | || ||||| | || || ||||| || | | || |||||||| ||| Sbjct 82900 GATTTATCTCGTGGTTGTAATACAGATGACGTTTATAACTTAACGTTGATTACAGCAGCG 82841 Query 961 CAAGCACTG 969 |||||| || Sbjct 82840 CAAGCAGTG 82832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2791660920 Database: lm_genome.fasta Posted date: Dec 15, 2012 12:17 AM Number of letters in database: 2,945,078 Number of sequences in database: 12 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2