RID: 0PMFHWT1014 Job Title:Q9HMP7:RecName: Full=DNA protection during... Program: BLASTP Query: unnamed protein product ID: lcl|Query_2362013(amino acid) Length: 295 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Structural polyprotein; Contains: RecName:... Cricket para... NA 928300 623 623 100% 0.0 100.00 895 P13418.2 RecName: Full=Genome polyprotein; Contains: RecName:... Deformed win... NA 198112 70.9 70.9 76% 2e-12 26.25 2893 Q8B3M2.2 RecName: Full=Structural polyprotein; Contains: RecName:... Acute bee pa... NA 1217067 67.8 67.8 65% 2e-11 26.11 904 Q9DSN8.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475780 63.9 63.9 65% 4e-10 27.78 2134 Q6WQ42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475779 62.8 62.8 64% 1e-09 28.06 2134 Q6R325.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475778 62.4 62.4 56% 1e-09 27.98 2134 Q9YLS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Simian hepat... NA 31707 52.4 52.4 73% 2e-06 23.42 839 P31788.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470593 52.4 52.4 56% 2e-06 25.00 2228 Q9DWR1.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... HPeV 5 strai... NA 122961 52.4 52.4 47% 2e-06 26.43 2188 Q9YID8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 474341 52.4 52.4 56% 3e-06 25.00 2228 A5LGW7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 31706 52.0 52.0 73% 3e-06 24.43 808 Q02381.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12098 52.0 52.0 56% 4e-06 25.00 2227 P08617.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12100 52.0 52.0 56% 4e-06 25.00 2227 P13901.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Echovirus 22... NA 103911 51.6 51.6 49% 5e-06 27.59 2180 Q66578.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470592 51.6 51.6 42% 5e-06 28.24 2227 Q8V0N6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12099 50.8 50.8 56% 8e-06 24.42 2227 P06441.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470422 50.8 50.8 56% 9e-06 24.42 2227 Q67825.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470423 50.8 50.8 42% 9e-06 27.48 2227 A3FMB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470424 50.4 50.4 56% 1e-05 24.42 2052 Q05794.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12097 49.7 49.7 73% 2e-05 23.08 852 P06442.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Simian hepat... NA 12102 49.7 49.7 32% 2e-05 31.68 2230 P14553.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470591 48.9 48.9 42% 4e-05 25.78 2225 Q5Y944.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... parechovirus B1 NA 1001061 48.5 48.5 60% 4e-05 24.04 2253 Q8JV21.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 35292 45.8 45.8 51% 4e-04 23.84 2335 Q9Q2N9.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 45.8 45.8 26% 4e-04 32.05 3471 Q91PP5.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 45.4 45.4 26% 5e-04 32.05 3473 Q83034.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Aichi virus ... NA 650132 42.0 42.0 46% 0.005 25.00 2432 O91464.2 Alignments: >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein 1; AltName: Full=CP1; Contains: RecName: Full=Capsid protein 4; AltName: Full=CP4; Contains: RecName: Full=Capsid protein 2; AltName: Full=CP2; Contains: RecName: Full=Capsid protein 3; AltName: Full=CP3 [Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968] Sequence ID: P13418.2 Length: 895 Range 1: 341 to 635 Score:623 bits(1606), Expect:0.0, Method:Compositional matrix adjust., Identities:295/295(100%), Positives:295/295(100%), Gaps:0/295(0%) Query 1 SKPTVQGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVL 60 SKPTVQGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVL Sbjct 341 SKPTVQGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVL 400 Query 61 SIPNYWDRFTWKTSDVTNTVLWDNYVSPFKVKPYSATITDRFRCTHMGYVANAFTYWRGS 120 SIPNYWDRFTWKTSDVTNTVLWDNYVSPFKVKPYSATITDRFRCTHMGYVANAFTYWRGS Sbjct 401 SIPNYWDRFTWKTSDVTNTVLWDNYVSPFKVKPYSATITDRFRCTHMGYVANAFTYWRGS 460 Query 121 IVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTEVSFTVPYI 180 IVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTEVSFTVPYI Sbjct 461 IVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTEVSFTVPYI 520 Query 181 ASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVSG 240 ASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVSG Sbjct 521 ASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVSG 580 Query 241 GPDLEFAGPTCPSYVPYAGDLTLADTRKIEAERTQEYSNNEDNRITTQCSRIVAQ 295 GPDLEFAGPTCPSYVPYAGDLTLADTRKIEAERTQEYSNNEDNRITTQCSRIVAQ Sbjct 581 GPDLEFAGPTCPSYVPYAGDLTLADTRKIEAERTQEYSNNEDNRITTQCSRIVAQ 635 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Short=L-protein; Contains: RecName: Full=Capsid protein VP2; Contains: RecName: Full=Putative capsid protein VP4; Contains: RecName: Full=Capsid protein VP3; Contains: RecName: Full=Capsid protein VP1; Contains: RecName: Full=Putative protein 2A-like; Contains: RecName: Full=Helicase; Contains: RecName: Full=3C-like protease; Short=3CL-PRO; Contains: RecName: Full=RNA-directed RNA polymerase [Deformed wing virus] Sequence ID: Q8B3M2.2 Length: 2893 Range 1: 503 to 730 Score:70.9 bits(172), Expect:2e-12, Method:Compositional matrix adjust., Identities:63/240(26%), Positives:101/240(42%), Gaps:28/240(11%) Query 30 HKMALSSTNEIETKEGL----AGTSL--------DEMDLSRVLSIPNYWDRFTWKTSDVT 77 H +AL TN +E L AGT+ ++M +S + S R WK Sbjct 503 HSLALG-TNLVEPLHALRLDAAGTTQHPVGCAPDEDMTVSSIASRYGLIRRVQWKKDHAK 561 Query 78 NTVLWDNYVSPFKVKPYSAT-ITDRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGR 136 ++L PF + T + +G V++ F WRGS+ Y F + +Q+H+GR Sbjct 562 GSLLLQLDADPFVEQRIEGTNPISLYWFAPVGVVSSMFMQWRGSLEYRFDIIASQFHTGR 621 Query 137 LRISFIP-YYYNTTISTGTPDVSRTQKIVVDLRTSTEVSFTVPYIASRPWLYCIRPESSW 195 L + ++P + + + + +V DL+ S +F VPY++ RPW + + ++ Sbjct 622 LIVGYVPGLTASLQLQMDYMKLKSSSYVVFDLQESNSFTFEVPYVSYRPW-WVRKYGGNY 680 Query 196 L--SKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVSGGPDLEFAGPTCPS 253 L S D MY V L+ + V ID+ V GG E P PS Sbjct 681 LPSSTDAPSTLFMYVQVP----------LIPMEAVSDTIDINVYVRGGSSFEVCVPVQPS 730 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Protein VP1; AltName: Full=Virion protein 2; Contains: RecName: Full=Protein VP4; AltName: Full=Virion protein 4; Contains: RecName: Full=Protein VP2; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP3; AltName: Full=Virion protein 1 [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN8.2 Length: 904 Range 1: 419 to 640 Score:67.8 bits(164), Expect:2e-11, Method:Compositional matrix adjust., Identities:59/226(26%), Positives:99/226(43%), Gaps:37/226(16%) Query 23 FDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSD-----VT 77 + G+D S +A NE+ + + +DEM + V P +W T+D ++ Sbjct 419 YKGIDNSVPLAFDPNNELGDLRDVFPSGVDEMAIGYVCGNPAVKHVLSWNTTDKVQAPIS 478 Query 78 NTVLWDNYVSPFKVKPYSATI------TDRFRCTHMG-----YVANAFTYWRGSIVYTFK 126 N W + P + YS I T R M YV N F+YWR ++ Y Sbjct 479 NGDDWGGVI-PVGMPCYSKIIRTTENDTTRTNTEIMDPAPCEYVCNMFSYWRATMCYRIA 537 Query 127 FVKTQYHSGRLRISFIP--YYYNTTISTGTPDVSRTQKI----------VVDLRTSTEVS 174 VKT +H+GRL I F P TT +PD+++ I ++DL TE++ Sbjct 538 IVKTAFHTGRLGIFFGPGKIPITTTKDNISPDLTQLDGIKAPSDNNYKYILDLTNDTEIT 597 Query 175 FTVPYIASRPWL-----YCIRPESSWLSKDNKDGALMYNCVSGIVR 215 VP+++++ ++ Y E++W ++ G L C+ I + Sbjct 598 IRVPFVSNKMFMKSTGIYGGNSENNWDFSESFTGFL---CIRPITK 640 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain L2Z] Sequence ID: Q6WQ42.1 Length: 2134 Range 1: 259 to 449 Score:63.9 bits(154), Expect:4e-10, Method:Compositional matrix adjust., Identities:55/198(28%), Positives:92/198(46%), Gaps:12/198(6%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 +AN+D D K++L+ E +++ + S+ SIP FT+ + T Sbjct 259 LANYD--DARAKVSLALGQEEFSRDSSSTGGELVHHFSQWTSIPCLAFTFTFPGTVGPGT 316 Query 80 VLWDNYVSPFKVKPYSATITDRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRI 139 +W V PF +++ T++ +A F +WRG IV+ F+ T+YHSGRL Sbjct 317 HIWSTTVDPFSCNLRASSTV---HPTNLSSIAGMFCFWRGDIVFEFQVFCTKYHSGRLMF 373 Query 140 SFIPYYYNTTISTGTPDVSRTQ-KIVVDLR-TSTEVSFTVPYIASRPWLYCIRP---ESS 194 ++P NT IST T + T V D+ ++ + F P+I+ P Y + P +S Sbjct 374 VYVPGDENTKISTLTAKQASTGLTAVFDINGVNSTLVFRCPFISDTP--YRVNPTTHKSL 431 Query 195 WLSKDNKDGALMYNCVSG 212 W K +YN ++ Sbjct 432 WPYATGKLVCYVYNILNA 449 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Van Reokel] Sequence ID: Q6R325.1 Length: 2134 Range 1: 259 to 445 Score:62.8 bits(151), Expect:1e-09, Method:Compositional matrix adjust., Identities:55/196(28%), Positives:91/196(46%), Gaps:16/196(8%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 +AN++ D K++L+ E +++ + S+ SIP FT+ + T Sbjct 259 LANYE--DARAKVSLALGQEGFSRDSSSTGGGMLYHFSQWTSIPCLAFIFTFPGTVGPGT 316 Query 80 VLWDNYVSPF--KVKPYSATITDRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGRL 137 +W V PF ++ +S T++ +A F +WRG IV+ F+ +T+YHSGRL Sbjct 317 RIWSTTVDPFSCNLRAFSTV-----HPTNLSSIAGMFCFWRGDIVFEFQVFRTKYHSGRL 371 Query 138 RISFIPYYYNTTISTGTP-DVSRTQKIVVDLR-TSTEVSFTVPYIASRPWLYCIRP---E 192 ++P NT IST T S V D+ ++ + F P+I+ P Y + P + Sbjct 372 MFVYVPGDENTKISTLTATQASSGLTAVFDINGVNSTLVFRCPFISDTP--YRVNPTTHK 429 Query 193 SSWLSKDNKDGALMYN 208 S W K +YN Sbjct 430 SPWPYATGKLVCYVYN 445 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Calnek] Sequence ID: Q9YLS4.1 Length: 2134 Range 1: 259 to 421 Score:62.4 bits(150), Expect:1e-09, Method:Compositional matrix adjust., Identities:47/168(28%), Positives:74/168(44%), Gaps:7/168(4%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 +AN++ +AL G L S+ SIP FT+ + T Sbjct 259 LANYEDARAKVSLALGQEEFSRDSSSTGGELLHH--FSQWTSIPCLAFTFTFPGTVGPGT 316 Query 80 VLWDNYVSPFKVKPYSATITDRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRI 139 +W V PF +++ T++ +A F +WRG IV+ F+ T+YHSGRL Sbjct 317 QIWSTTVDPFSCNLRASSTV---HPTNLSSIAGMFCFWRGDIVFEFQVFCTKYHSGRLMF 373 Query 140 SFIPYYYNTTISTGTP-DVSRTQKIVVDLR-TSTEVSFTVPYIASRPW 185 ++P NT IST T S V D+ ++ + F P+I+ P+ Sbjct 374 VYVPGDENTKISTLTAKQASSGLTAVFDINGVNSTLVFRCPFISDTPY 421 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B [Simian hepatitis A virus Macaca/Philippines/CY-145/1988] Sequence ID: P31788.1 Length: 839 Range 1: 262 to 467 Score:52.4 bits(124), Expect:2e-06, Method:Compositional matrix adjust., Identities:52/222(23%), Positives:94/222(42%), Gaps:23/222(10%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + S SIP +F + S Sbjct 262 LSNYE--DARAKMSFALDQENWRSDPSEGGGIKITHFSTWTSIPTLAAQFAFNASASVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFYQMTNSNPDQKYITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW-LYCIRPE 192 RL+ F+P +++ T + T V T + + F VP+I+ P+ + C Sbjct 375 RLQFCFVPGNELIEVTSITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPYRVNC---- 430 Query 193 SSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDV 234 ++ ++ G Y + ++ V N+L + NV S + V Sbjct 431 --YIKSSHQKGE--YTAIEKLI-VYCYNRLTSPSNVASHVRV 467 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Norway/NOR-21/1998] Sequence ID: Q9DWR1.4 Length: 2228 Range 1: 262 to 426 Score:52.4 bits(124), Expect:2e-06, Method:Compositional matrix adjust., Identities:43/172(25%), Positives:73/172(42%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDASQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATITD---RFRC-THMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T+ +C T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPEQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P +S T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVSHITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [HPeV 5 strain CT86-6760] Sequence ID: Q9YID8.1 Length: 2188 Range 1: 425 to 542 Score:52.4 bits(124), Expect:2e-06, Method:Compositional matrix adjust., Identities:37/140(26%), Positives:61/140(43%), Gaps:22/140(15%) Query 111 ANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTS 170 NA+TY+RGS+V + ++ GRLR+ F P + T T ++ + D+ + Sbjct 425 VNAYTYFRGSLVLRMSVYASTFNRGRLRMGFFPNFTTNT----TSEMDNAIYTICDIGSD 480 Query 171 TEVSFTVPYIASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFS 230 T+PY S+W+ K N G+ +VEVLN+L + + Sbjct 481 NSFEITIPYTF-----------STWMRKTNGRPI-------GLFQVEVLNRLTYNSSCPN 522 Query 231 EIDVICEVSGGPDLEFAGPT 250 ++ I + G D F PT Sbjct 523 KVHCIVQGRLGNDARFYCPT 542 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Japan/HAJ85-1/1985] Sequence ID: A5LGW7.1 Length: 2228 Range 1: 262 to 426 Score:52.4 bits(124), Expect:3e-06, Method:Compositional matrix adjust., Identities:43/172(25%), Positives:73/172(42%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDASQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATITD---RFRC-THMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T+ +C T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPEQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P +S T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVSHITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX [Human hepatitis A virus Hu/Georgia/GA76/1976] Sequence ID: Q02381.1 Length: 808 Range 1: 241 to 446 Score:52.0 bits(123), Expect:3e-06, Method:Compositional matrix adjust., Identities:54/221(24%), Positives:93/221(42%), Gaps:21/221(9%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 241 LSNYE--DARAKMSFALDQEDWKSDASQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 297 Query 80 VLWDNYVSPFKVKPYSATITD---RFRC-THMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T+ +C T + + F +WRG +V+ F+ T+YHSG Sbjct 298 ----QQIKVIPVDPYFFQMTNTNPEQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 353 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPWLYCIRPES 193 RL F+P +S T + T V T + + F VP+I+ P+ +S Sbjct 354 RLLFCFVPGNELIDVSHITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPYRVNRYTKS 413 Query 194 SWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDV 234 S ++ G Y + ++ V N+L + NV S + V Sbjct 414 S-----HQKGE--YTAIGKLI-VYCYNRLTSPSNVASHVRV 446 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VP1-pX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Australia/HM175/1976] Sequence ID: P08617.1 Length: 2227 Range 1: 262 to 426 Score:52.0 bits(123), Expect:4e-06, Method:Compositional matrix adjust., Identities:43/172(25%), Positives:72/172(41%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P +S T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVSGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Northern Africa/MBB/1978] Sequence ID: P13901.1 Length: 2227 Range 1: 262 to 426 Score:52.0 bits(123), Expect:4e-06, Method:Compositional matrix adjust., Identities:43/172(25%), Positives:72/172(41%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P +S T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVSGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Echovirus 22 (strain Harris)] Sequence ID: Q66578.1 Length: 2180 Range 1: 413 to 535 Score:51.6 bits(122), Expect:5e-06, Method:Compositional matrix adjust., Identities:40/145(28%), Positives:64/145(44%), Gaps:22/145(15%) Query 106 HMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVV 165 ++ N+++Y+RGS+V + ++ GRLR+ F P TT ST T D + Sbjct 413 NLNVFVNSYSYFRGSLVLRLSVYASTFNRGRLRMGFFP--NATTDSTSTLD--NAIYTIC 468 Query 166 DLRTSTEVSFTVPYIASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAA 225 D+ + T+PY S+W+ K N G+ ++EVLN+L Sbjct 469 DIGSDNSFEITIPY-----------SFSTWMRKTNGHPI-------GLFQIEVLNRLTYN 510 Query 226 QNVFSEIDVICEVSGGPDLEFAGPT 250 + SE+ I + G D F PT Sbjct 511 SSSPSEVYCIVQGKMGQDARFFCPT 535 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Sierra Leone/SLF88/1988] Sequence ID: Q8V0N6.1 Length: 2227 Range 1: 301 to 426 Score:51.6 bits(122), Expect:5e-06, Method:Compositional matrix adjust., Identities:37/131(28%), Positives:57/131(43%), Gaps:11/131(8%) Query 61 SIPNYWDRFTWKTSDVTNTVLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTY 116 SIP +F + SD + V PY +T D+ T + + F + Sbjct 301 SIPTLAAQFPFNASDSVG-----QQIKVIPVDPYFFQMTNSNPDQKCITALASICQMFCF 355 Query 117 WRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VS 174 WRG +V+ F+ T+YHSGRL F+P +S T + T V T + + Sbjct 356 WRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVSGITLKQATTAPCAVMDITGVQSTLR 415 Query 175 FTVPYIASRPW 185 F VP+I+ P+ Sbjct 416 FRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Los Angelos/LA/1975] Sequence ID: P06441.1 Length: 2227 Range 1: 262 to 426 Score:50.8 bits(120), Expect:8e-06, Method:Compositional matrix adjust., Identities:42/172(24%), Positives:72/172(41%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P ++ T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVTGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Germany/GBM/1976] Sequence ID: Q67825.1 Length: 2227 Range 1: 262 to 426 Score:50.8 bits(120), Expect:9e-06, Method:Compositional matrix adjust., Identities:42/172(24%), Positives:72/172(41%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P ++ T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVTGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/China/H2/1982] Sequence ID: A3FMB2.1 Length: 2227 Range 1: 301 to 426 Score:50.8 bits(120), Expect:9e-06, Method:Compositional matrix adjust., Identities:36/131(27%), Positives:57/131(43%), Gaps:11/131(8%) Query 61 SIPNYWDRFTWKTSDVTNTVLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTY 116 SIP +F + SD + V PY +T D+ T + + F + Sbjct 301 SIPTLAAQFPFNASDSVG-----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCF 355 Query 117 WRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VS 174 WRG +V+ F+ T+YHSGRL F+P ++ T + T V T + + Sbjct 356 WRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVTGITLKQATTAPCAVMDITGVQSTLR 415 Query 175 FTVPYIASRPW 185 F VP+I+ P+ Sbjct 416 FRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Arizona/HAS-15/1979] Sequence ID: Q05794.2 Length: 2052 Range 1: 262 to 426 Score:50.4 bits(119), Expect:1e-05, Method:Compositional matrix adjust., Identities:42/172(24%), Positives:72/172(41%), Gaps:13/172(7%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 RL F+P ++ T + T V T + + F VP+I+ P+ Sbjct 375 RLLFCFVPGNELIDVTGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B [Human hepatitis A virus Hu/Costa Rica/CR326/1960] Sequence ID: P06442.1 Length: 852 Range 1: 262 to 467 Score:49.7 bits(117), Expect:2e-05, Method:Compositional matrix adjust., Identities:51/221(23%), Positives:91/221(41%), Gaps:21/221(9%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPWLYCIRPES 193 RL F+P ++ T + T V T + + F VP+I+ P+ + Sbjct 375 RLLFCFVPGNELIDVTGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPYRV-----N 429 Query 194 SWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDV 234 + ++ G Y + ++ V N+L + NV S + V Sbjct 430 RYTKSAHQKGE--YTAIGKLI-VYCYNRLTSPSNVASHVRV 467 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985] Sequence ID: P14553.2 Length: 2230 Range 1: 330 to 430 Score:49.7 bits(117), Expect:2e-05, Method:Compositional matrix adjust., Identities:32/101(32%), Positives:48/101(47%), Gaps:6/101(5%) Query 91 VKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYY 146 V PY +T D+ T + V F +WRG +V+ F+ T+YHSGRL F+P Sbjct 330 VDPYFYQMTNSNPDQKCITALASVCQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNE 389 Query 147 NTTISTGTPDVSRTQKIVVDLRTSTE--VSFTVPYIASRPW 185 +S T + T V T + + F VP+I+ P+ Sbjct 390 LIDVSGITLKQATTAPCAVMDITGVQSTLRFRVPWISDTPY 430 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/France/CF-53/1979] Sequence ID: Q5Y944.1 Length: 2225 Range 1: 262 to 382 Score:48.9 bits(115), Expect:4e-05, Method:Compositional matrix adjust., Identities:33/128(26%), Positives:55/128(42%), Gaps:11/128(8%) Query 20 MANFDGMDMSHKMALSSTNEIETKEGLAGTSLDEMDLSRVLSIPNYWDRFTWKTSDVTNT 79 ++N++ D KM+ + E + G + + SIP +F + SD Sbjct 262 LSNYE--DARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVG- 318 Query 80 VLWDNYVSPFKVKPYSATIT----DRFRCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSG 135 + V PY +T D+ T + + F +WRG +V+ F+ T+YHSG Sbjct 319 ----QQIKVIPVDPYFFQMTNSNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSG 374 Query 136 RLRISFIP 143 RL F+P Sbjct 375 RLLFCFVP 382 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A1; Short=P2A1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A2; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [parechovirus B1] Sequence ID: Q8JV21.1 Length: 2253 Range 1: 378 to 533 Score:48.5 bits(114), Expect:4e-05, Method:Compositional matrix adjust., Identities:44/183(24%), Positives:78/183(42%), Gaps:32/183(17%) Query 111 ANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTS 170 ++ + YWRGS V + ++ GRLR++F P N + + +V D+ + Sbjct 378 SSCYNYWRGSFVIKLTVYASTFNKGRLRMAFFP---NREGAYTQDEAQNAIFVVCDIGLN 434 Query 171 TEVSFTVPYIASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQLVAAQNVFS 230 T+PY W +RP ++ N G L R++VLN+L + + Sbjct 435 NTFEMTIPYT----WGNWMRP-----TRGNSLGHL---------RIDVLNRLTYNSSSPN 476 Query 231 EIDVICEVSGGPDLEFAGPTCPSYV-----PYAGDLTLADTRKIEAERTQEYSNNEDNRI 285 ++ I ++ G D F PT + V + ++ L D+ + E +NE+ I Sbjct 477 AVNCILQIKMGDDAMFMVPTTSNLVWQGLHSWGSEMDLVDS----LDNPDEIQDNEE--I 530 Query 286 TTQ 288 TQ Sbjct 531 QTQ 533 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus SAT 2] Sequence ID: Q9Q2N9.1 Length: 2335 Range 1: 589 to 722 Score:45.8 bits(107), Expect:4e-04, Method:Compositional matrix adjust., Identities:36/151(24%), Positives:64/151(42%), Gaps:18/151(11%) Query 103 RCTHMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTP-DVSRTQ 161 + T++ +A+ +T + GS+ Y F + +H + ++++P TP D + Sbjct 589 KNTYLAGLADYYTQYSGSLNYHFMYTGPTHHKAKFMVAYVPPGIEVEELPKTPEDAAHCY 648 Query 162 KIVVDLRTSTEVSFTVPYIASRPWLYCIRPESSWLSKDNKDGALMYNCVSGIVRVEVLNQ 221 D ++ +F VPY++S + Y + D M +V ++V + Sbjct 649 HSEWDTGLNSNFTFAVPYLSSGDFSYT-----------HTDTPAMATTNGWVVVLQVTDT 697 Query 222 LVAAQNVFSEIDVICEVSGGPDLEFAGPTCP 252 A E V+ VS GPDLEF P P Sbjct 698 HSA------EAAVVVSVSAGPDLEFRFPIDP 722 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 899 to 975 Score:45.8 bits(107), Expect:4e-04, Method:Compositional matrix adjust., Identities:25/78(32%), Positives:42/78(53%), Gaps:2/78(2%) Query 105 THMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIV 164 T++ VA+ F W GS+ YTF F + + G++ +S +P + + T ++ +V Sbjct 899 TNLSVVAHMFAKWSGSMKYTFVFGASMFDRGKIMVSAVPVQFRNSKLT-LSQMAAFPSMV 957 Query 165 VDLRTST-EVSFTVPYIA 181 DL T E +F VPYI+ Sbjct 958 CDLSVETREFTFEVPYIS 975 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 902 to 978 Score:45.4 bits(106), Expect:5e-04, Method:Compositional matrix adjust., Identities:25/78(32%), Positives:42/78(53%), Gaps:2/78(2%) Query 105 THMGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIV 164 T++ VA+ F W GS+ YTF F + + G++ +S +P + + T ++ +V Sbjct 902 TNLSVVAHMFAKWSGSMRYTFVFGASMFDRGKIMVSAVPVQFRNSKLT-LSQMAAFPSMV 960 Query 165 VDLRTST-EVSFTVPYIA 181 DL T E +F VPYI+ Sbjct 961 CDLSMETREFTFEVPYIS 978 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Aichi virus A846/88] Sequence ID: O91464.2 Length: 2432 Range 1: 626 to 747 Score:42.0 bits(97), Expect:0.005, Method:Compositional matrix adjust., Identities:34/136(25%), Positives:57/136(41%), Gaps:15/136(11%) Query 107 MGYVANAFTYWRGSIVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVD 166 + YV + F+ WRG + F + H GRL + + P + + R V D Sbjct 626 ISYVISLFSQWRGELAAHLLFTGSAQHYGRLVVCYTPAAPQPPSTMQ--EAMRGTYTVWD 683 Query 167 LRTSTEVSFTVPYIASRPWLYCIRPESSWLSKD-NKDGALMYNCVSGIVRVEVLNQLVAA 225 + ++ + FT+P+I++ S W + D N AL+ +G V + V N LV Sbjct 684 VNAASTLEFTIPFISN----------SYWKTVDVNNPDALL--STTGYVSIWVQNPLVGP 731 Query 226 QNVFSEIDVICEVSGG 241 + V +S G Sbjct 732 HTAPASALVQAFISAG 747