<ul id="msgFrm" class=" msg">
<li class="warning">
    
    <p class="warning">Warning: Query 'Query_8818895 Wesselsbron.. ' (# 1): Warning: One or more O characters replaced by X for alignment score calculations at positions 23</p><p class="warning">Informational Message: One or more O characters replaced by X for alignment score calculations at positions 23</p>
</li>
</ul>
RID: 0C17CD2F016	
Job Title:Wesselsbron NS Protein 1 C5H431 Involved in...				
Program: BLASTP 
Query: Wesselsbron NS Protein 1 C5H431 Involved in immune evasion, pathog ID: lcl|Query_8818895(amino acid) Length: 378
Database: swissprot Non-redundant UniProtKB/SwissProt sequences
	
Sequences producing significant alignments:
                                                                  Scientific      Common                     Max    Total Query   E    Per.   Acc.                        
Description                                                       Name            Name            Taxid      Score  Score cover Value  Ident  Len        Accession        
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Wesselsbron ... NA              164416     759    759   96%   0.0    98.34  3405       C5H431.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              31641      531    531   100%  1e-180 62.17  1163       P29165.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407141     533    533   100%  7e-173 62.33  3412       Q074N0.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407135     533    533   100%  7e-173 62.07  3411       Q89277.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407134     533    533   100%  1e-172 62.07  3411       Q6DV88.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407136     532    532   100%  2e-172 61.80  3411       Q6J3P1.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407138     531    531   100%  3e-172 61.64  3411       Q98803.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407139     531    531   100%  3e-172 62.07  3412       Q1X880.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407140     531    531   100%  4e-172 62.17  3412       Q1X881.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              407137     531    531   100%  4e-172 62.07  3411       Q9YRV3.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA              11090      531    531   100%  6e-172 61.54  3411       P03314.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Edge Hill virus NA              64296      469    469   98%   3e-150 56.60  3401       C8XPB2.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Banzi virus     NA              38837      463    463   94%   3e-148 59.27  3393       C8XPA8.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kokobera virus  NA              44024      369    369   96%   1e-115 47.92  3410       Q32ZD5.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus      NA              64320      367    367   100%  4e-115 45.77  3419       Q32ZE1.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA              2043570    366    366   96%   1e-114 46.81  3423       A0A024B7W1.1     
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA              2316109    365    365   96%   4e-114 46.54  3423       A0A142I5B9.1     
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408871     355    355   94%   9e-111 45.66  3387       P09866.2         
RecName: Full=Structural polyprotein; Contains: RecName:...       Japanese enc... NA              2555554    349    349   96%   1e-110 42.94  1198       P0DOK8.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408689     354    354   94%   2e-110 45.38  3387       Q2YHF2.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408688     353    353   94%   4e-110 44.82  3387       Q2YHF0.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           Kunjin virus... NA              11078      353    353   96%   5e-110 43.49  3433       P14335.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           Murray valle... NA              301478     353    353   96%   5e-110 44.04  3434       P05769.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408687     352    352   94%   1e-109 45.10  3387       Q5UCB8.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408686     352    352   94%   1e-109 45.10  3387       Q58HT7.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408694     352    352   99%   1e-109 42.93  3391       Q9WDA6.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           West Nile virus NA              11082      352    352   96%   1e-109 44.04  3430       P06935.2         
RecName: Full=Genome polyprotein; Contains: RecName:...           West Nile vi... NA              1968826    351    351   96%   2e-109 43.21  3433       Q9Q6P4.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Tembusu virus   NA              64293      351    351   96%   2e-109 44.88  3425       G1CRV4.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              11066      350    350   99%   4e-109 42.93  3388       P12823.1         
RecName: Full=Structural polyprotein; Contains: RecName:...       Japanese enc... NA              11075      344    344   96%   5e-109 42.66  1198       P0DOH8.1         
RecName: Full=Structural polyprotein; Contains: RecName:...       Japanese enc... NA              11074      344    344   96%   5e-109 42.66  1198       P0DOH9.1         
RecName: Full=Structural polyprotein; Contains: RecName:...       Japanese enc... NA              11073      344    344   96%   6e-109 42.66  1198       P0DOH7.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA              2555554    350    350   96%   6e-109 42.94  3432       G3FEX6.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              31634      350    350   99%   6e-109 42.67  3391       P29990.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           Dengue virus... NA              11067      349    349   99%   7e-109 42.93  1683       P27914.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Rocio virus     NA              64315      348    348   96%   2e-108 43.09  3425       Q32ZD4.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              11064      348    348   95%   3e-108 43.61  3391       P07564.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              11065      348    348   94%   3e-108 44.10  3391       P14340.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              31635      347    347   99%   5e-108 42.67  3391       P29991.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA              11076      345    345   96%   5e-108 42.94  1440       P14403.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              413041     347    347   99%   6e-108 42.40  3391       P14337.2         
RecName: Full=Genome polyprotein; Contains: RecName:...           Usutu virus     NA              64286      346    346   96%   1e-107 43.21  3434       Q5WPU5.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... St. Louis en... NA              11081      346    346   96%   1e-107 43.77  3412       P09732.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408691     346    346   100%  1e-107 43.65  3390       Q6YMS3.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408690     346    346   100%  1e-107 43.39  3390       Q99D35.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA              11074      345    345   96%   2e-107 42.66  3432       P19110.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA              11075      345    345   96%   2e-107 42.66  3432       P32886.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA              11073      345    345   96%   2e-107 42.66  3432       P27395.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408692     345    345   100%  4e-107 43.39  3390       Q6YMS4.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408693     343    343   100%  1e-106 43.12  3390       Q5UB51.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              408870     343    343   100%  1e-106 43.12  3390       P27915.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Ilheus virus    NA              59563      341    341   96%   8e-106 43.09  3424       Q32ZD7.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Bussuquara v... NA              64304      335    335   96%   7e-104 42.66  3429       Q32ZE0.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           Dengue virus... NA              408685     334    334   99%   2e-103 42.13  3392       P27909.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              11059      333    333   99%   3e-103 42.40  3392       P17763.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              33741      333    333   99%   5e-103 42.40  3391       P33478.2         
RecName: Full=Genome polyprotein; Contains: RecName:...           Tick-borne e... NA              70733      322    322   100%  2e-99  41.01  3414       Q01299.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           Tick-borne e... NA              11088      322    322   94%   4e-99  43.14  3414       P14336.4         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA              31636      316    316   99%   6e-99  40.53  1127       P30026.1         
RecName: Full=Genome polyprotein; Contains: RecName:...           Langat virus... NA              31638      320    320   94%   1e-98  42.58  3414       P29837.2         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Omsk hemorrh... NA              12542      318    318   94%   6e-98  42.30  3414       Q7T6D2.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Louping ill ... NA              11086      317    317   94%   1e-97  42.58  3414       P22338.2         
RecName: Full=Genome polyprotein; Contains: RecName:...           Tick-borne e... NA              11087      310    310   94%   3e-95  41.46  3412       P07720.3         
RecName: Full=Genome polyprotein; Contains: RecName:...           Tick-borne p... NA              39008      308    308   96%   2e-94  41.32  3415       Q04538.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Alkhumra hem... NA              172148     306    306   100%  6e-94  39.21  3416       Q91B85.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kyasanur For... NA              33743      304    304   100%  4e-93  38.95  3416       D7RF80.1         
RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cell fusing ... NA              31658      105    105   53%   2e-24  34.33  3341       P33515.1         

Alignments:

>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Wesselsbron virus]
Sequence ID: C5H431.1 Length: 3405
Range 1: 762 to 1123

Score:759 bits(1960), Expect:0.0, 
Method:Compositional matrix adjust., 
Identities:356/362(98%), Positives:358/362(98%), Gaps:1/362(0%)

Query  18    LICAT-IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQ  76
             L+ AT +  EVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQ
Sbjct  762   LVLATGVGAEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQ  821

Query  77    DGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSEL  136
             DGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSEL
Sbjct  822   DGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSEL  881

Query  137   KYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRP  196
             KYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRP
Sbjct  882   KYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRP  941

Query  197   EFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHT  256
             EFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHT
Sbjct  942   EFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHT  1001

Query  257   LDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEK  316
             LDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEK
Sbjct  1002  LDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEK  1061

Query  317   CDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWV  376
             CDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWV
Sbjct  1062  CDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWV  1121

Query  377   VA  378
             VA
Sbjct  1122  VA  1123


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A [Yellow fever virus 1899/81]
Sequence ID: P29165.1 Length: 1163
Range 1: 754 to 1130

Score:531 bits(1369), Expect:1e-180, 
Method:Compositional matrix adjust., 
Identities:235/378(62%), Positives:296/378(78%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
              N ++S + ++  +    +   +  + GC++++ +RE+KCGDGVF+F+DSDDW +KY Y 
Sbjct  754   RNMTMSMSMILVGVIMMFLSLGVGADQGCAINFGKRELKCGDGVFIFRDSDDWLNKYSYY  813

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
             PEDP  +A+++  + ++G CGL+SV  LEH MW SR DEINAIL+ENEVD++VVVQ+   
Sbjct  814   PEDPVKLASIVKASFEEGKCGLNSVDSLEHEMWRSRADEINAILEENEVDISVVVQDPKN  873

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             +Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS+++
Sbjct  874   IYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSLQI  933

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             EEFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI T
Sbjct  934   EEFGTGVFTTRVYMDAVFEYTMDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHT  993

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
             LE L+Y+ECEWP +HT+ G  V ESDMFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE
Sbjct  994   LETLDYKECEWPLTHTI-GTSVEESDMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLE  1052

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +KRE CPGT+VVVD  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME
Sbjct  1053  VKREACPGTSVVVDGGCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPME  1112

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP+ T++ HLV+SWV A
Sbjct  1113  IRPRKTHDNHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ethiopia/Couma/1961]
Sequence ID: Q074N0.1 Length: 3412
Range 1: 755 to 1130

Score:533 bits(1374), Expect:7e-173, 
Method:Compositional matrix adjust., 
Identities:235/377(62%), Positives:294/377(77%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+FVF+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIFVFRDSDDWLTKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A++I  +H++G CGL+SV  LEH MW SR DEINAI +ENEVD++VVVQ+   +
Sbjct  815   EDPVKLASIIKASHEEGKCGLNSVDSLEHEMWRSRADEINAIFEENEVDISVVVQDPKNI  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN+IF+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLIFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFG GV+ TRVFM   FDY+  CD   LGAAV G  SAHG P FWM S E+NGTWM+ TL
Sbjct  935   EFGMGVFTTRVFMDAVFDYSVDCDGAILGAAVNGKKSAHGSPTFWMGSHEVNGTWMVHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             E L+Y+ECEWP +HT+ G  V ESDMFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   ETLDYKECEWPLTHTI-GTSVEESDMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             +RE CPGT+VV+D  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  RREPCPGTSVVLDTGCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP  T+E+HLV+SWV A
Sbjct  1114  RPMKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus strain French neurotropic vaccine]
Sequence ID: Q89277.2 Length: 3411
Range 1: 755 to 1130

Score:533 bits(1374), Expect:7e-173, 
Method:Compositional matrix adjust., 
Identities:234/377(62%), Positives:297/377(78%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+F+F+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAINFAKRELKCGDGIFIFRDSDDWLNKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A+++  + ++G CGL+SV  LEH MW SR DEINAIL+ENEVD++VVVQ+   V
Sbjct  815   EDPVKLASIVKASFEEGKCGLNSVDSLEHEMWRSRADEINAILEENEVDISVVVQDPKNV  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI TL
Sbjct  935   EFGTGVFTTRVYMDAVFEYTIDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             EAL+Y+ECEWP +HT+ G  V ES+MFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   EALDYKECEWPLTHTI-GTSVEESEMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             KRE CPGT+V++D  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  KREACPGTSVIIDGNCDGRGKSARSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP+ T+E+HLV+SWV A
Sbjct  1114  RPRKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus strain Ghana/Asibi/1927]
Sequence ID: Q6DV88.1 Length: 3411
Range 1: 755 to 1130

Score:533 bits(1373), Expect:1e-172, 
Method:Compositional matrix adjust., 
Identities:234/377(62%), Positives:297/377(78%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+F+F+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAINFGKRELKCGDGIFIFRDSDDWLNKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A+++  + ++G CGL+SV  LEH MW SR DEINAIL+ENEVD++VVVQ+   V
Sbjct  815   EDPVKLASIVKASFEEGKCGLNSVDSLEHEMWRSRADEINAILEENEVDISVVVQDPKNV  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI TL
Sbjct  935   EFGTGVFTTRVYMDAVFEYTIDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             EAL+Y+ECEWP +HT+ G  V ES+MFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   EALDYKECEWPLTHTI-GTSVEESEMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             KRE CPGT+V++D  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  KREACPGTSVIIDGNCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP+ T+E+HLV+SWV A
Sbjct  1114  RPRKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ivory Coast/1999]
Sequence ID: Q6J3P1.1 Length: 3411
Range 1: 755 to 1130

Score:532 bits(1371), Expect:2e-172, 
Method:Compositional matrix adjust., 
Identities:233/377(62%), Positives:297/377(78%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+F+F+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAINFGKRELKCGDGIFIFRDSDDWLNKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A+++  + ++G CGL+SV  LEH MW SR DEINAIL+ENEVD++VVVQ+   V
Sbjct  815   EDPVKLASIVKASFEEGKCGLNSVDSLEHEMWRSRADEINAILEENEVDISVVVQDPKNV  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI TL
Sbjct  935   EFGTGVFTTRVYMDAVFEYTIDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             EAL+Y+ECEWP +HT+ G  V ES+MFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   EALDYKECEWPLTHTI-GTSVEESEMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             +RE CPGT+V++D  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  RREACPGTSVIIDGNCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP+ T+E+HLV+SWV A
Sbjct  1114  RPRKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ivory Coast/85-82H/1982]
Sequence ID: Q98803.1 Length: 3411
Range 1: 754 to 1130

Score:531 bits(1369), Expect:3e-172, 
Method:Compositional matrix adjust., 
Identities:233/378(62%), Positives:296/378(78%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
              N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+F+F+DSDDW +KY Y 
Sbjct  754   RNMTMSMSMILVGVIMMFLSLGVGADQGCAINFGKRELKCGDGIFIFRDSDDWLNKYSYY  813

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
             PEDP  +A+++  + ++G CGL+SV  L+H MW SR DEINAIL+ENEVD++VVVQ+   
Sbjct  814   PEDPVKLASIVKASFEEGKCGLNSVDSLDHEMWRSRADEINAILEENEVDISVVVQDPKN  873

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             VY RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++
Sbjct  874   VYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQI  933

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             EEFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI T
Sbjct  934   EEFGTGVFTTRVYMDAVFEYTIDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHT  993

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
             LE L+Y+ECEWP +HT+ G  V ESDMFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE
Sbjct  994   LETLDYKECEWPLTHTI-GTSVEESDMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLE  1052

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +KRE CPGT+V++D  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME
Sbjct  1053  VKREACPGTSVIIDGNCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGNDGCWYPME  1112

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP+ T+E+HLV+SWV A
Sbjct  1113  IRPRKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Uganda/A7094A4/1948]
Sequence ID: Q1X880.1 Length: 3412
Range 1: 755 to 1130

Score:531 bits(1369), Expect:3e-172, 
Method:Compositional matrix adjust., 
Identities:234/377(62%), Positives:294/377(77%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+FVF+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIFVFRDSDDWLTKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A++I  ++++G CGL+SV  LEH MW SR DEINAI +ENEVD+++VVQ+   +
Sbjct  815   EDPVKLASIIKASYEEGKCGLNSVDSLEHEMWRSRADEINAIFEENEVDISIVVQDPKNI  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN+IF+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLIFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFG GV+ TRVFM   FDY+  CD   LGAAV G  SAHG P FWM S E+NGTWM+ TL
Sbjct  935   EFGMGVFTTRVFMDAVFDYSVDCDGAILGAAVNGKKSAHGSPTFWMGSHEVNGTWMMHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             E L+Y+ECEWP +HT+ G  V ESDMFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   ETLDYKECEWPLTHTI-GTSVEESDMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             +RE CPGT+VVVD  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  RREPCPGTSVVVDTSCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP  T+E+HLV+SWV A
Sbjct  1114  RPMKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Angola/14FA/1971]
Sequence ID: Q1X881.1 Length: 3412
Range 1: 754 to 1130

Score:531 bits(1369), Expect:4e-172, 
Method:Compositional matrix adjust., 
Identities:235/378(62%), Positives:293/378(77%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
              N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+FVF+DSDDW +KY Y 
Sbjct  754   RNMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIFVFRDSDDWLTKYSYY  813

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
             PEDP  +A++I  +H++G CGL+SV  LEH MW SR DEINAI +ENEVD++VVVQ+   
Sbjct  814   PEDPVKLASIIKASHEEGKCGLNSVDSLEHEMWRSRADEINAIFEENEVDISVVVQDPKN  873

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             +Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++
Sbjct  874   IYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQI  933

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             EEFG GV+ TRVFM   FDY+  CD   LGAAV G  SAHG P FWM S E+NGTWMI T
Sbjct  934   EEFGMGVFTTRVFMDATFDYSVDCDGAILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHT  993

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
             LE L+Y+ECEWP +HT+ G  V ESDMFMPRS+ GP+S HN IPGYKVQT+GPW  VPLE
Sbjct  994   LETLDYKECEWPLTHTI-GTSVEESDMFMPRSIGGPVSSHNRIPGYKVQTNGPWMQVPLE  1052

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +KRE CPGT+VVVD  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME
Sbjct  1053  VKREVCPGTSVVVDSNCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPME  1112

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP  T+++HLV+SWV A
Sbjct  1113  IRPMKTSDSHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus Trinidad/79A/1979]
Sequence ID: Q9YRV3.1 Length: 3411
Range 1: 755 to 1130

Score:531 bits(1369), Expect:4e-172, 
Method:Compositional matrix adjust., 
Identities:234/377(62%), Positives:296/377(78%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+F+F+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAINFGKRELKCGDGIFIFRDSDDWLNKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A+++  + ++G CGL+SV  LEH MW SR DEINAIL+ENEVD++VVVQ+   V
Sbjct  815   EDPVKLASIVKASFEEGKCGLNSVDSLEHEMWRSRADEINAILEENEVDISVVVQDPKNV  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI TL
Sbjct  935   EFGTGVFTTRVYMDAVFEYTIDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             EAL+Y+ECEWP +HT+ G  V ES+MFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   EALDYKECEWPLTHTI-GTSVEESEMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             KRE CPGT+V++D  CD R KS RSTTDSGKIIPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  KREACPGTSVIIDGNCDGRGKSTRSTTDSGKIIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP  T+E+HLV+SWV A
Sbjct  1114  RPMKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus 17D]
Sequence ID: P03314.1 Length: 3411
Range 1: 755 to 1130

Score:531 bits(1367), Expect:6e-172, 
Method:Compositional matrix adjust., 
Identities:232/377(62%), Positives:296/377(78%), Gaps:1/377(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  + GC++++ +RE+KCGDG+F+F+DSDDW +KY Y P
Sbjct  755   NMTMSMSMILVGVIMMFLSLGVGADQGCAINFGKRELKCGDGIFIFRDSDDWLNKYSYYP  814

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             EDP  +A+++  + ++G CGL+SV  LEH MW SR DEINAI +ENEVD++VVVQ+   V
Sbjct  815   EDPVKLASIVKASFEEGKCGLNSVDSLEHEMWRSRADEINAIFEENEVDISVVVQDPKNV  874

Query  122   YLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVE  181
             Y RG+H F R +  L+YGWKTWGKN++F+P RKNG+FIIDGKS+ ECPF+ RVWNS ++E
Sbjct  875   YQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIIDGKSRKECPFSNRVWNSFQIE  934

Query  182   EFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTL  241
             EFGTGV+ TRV+M   F+YT  CD   LGAAV G  SAHG P FWM S E+NGTWMI TL
Sbjct  935   EFGTGVFTTRVYMDAVFEYTIDCDGSILGAAVNGKKSAHGSPTFWMGSHEVNGTWMIHTL  994

Query  242   EALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEI  301
             EAL+Y+ECEWP +HT+ G  V ES+MFMPRS+ GP+S HNHIPGYKVQT+GPW  VPLE+
Sbjct  995   EALDYKECEWPLTHTI-GTSVEESEMFMPRSIGGPVSSHNHIPGYKVQTNGPWMQVPLEV  1053

Query  302   KREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEV  361
             KRE CPGT+V++D  CD R KS RSTTDSGK+IPEWCCRSCTMPPVSF G DGCWY ME+
Sbjct  1054  KREACPGTSVIIDGNCDGRGKSTRSTTDSGKVIPEWCCRSCTMPPVSFHGSDGCWYPMEI  1113

Query  362   RPKHTNEAHLVKSWVVA  378
             RP+ T+E+HLV+SWV A
Sbjct  1114  RPRKTHESHLVRSWVTA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Edge Hill virus]
Sequence ID: C8XPB2.1 Length: 3401
Range 1: 757 to 1126

Score:469 bits(1206), Expect:3e-150, 
Method:Compositional matrix adjust., 
Identities:210/371(57%), Positives:273/371(73%), Gaps:3/371(0%)

Query  10    VIRALREPLICAT--IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTM  67
             V+ A+   L+  T  +  EVGCSL  K+RE+KCGDG+F+F D +DW  KY++ PEDPK +
Sbjct  757   VLMAVGGILLFMTLGVSGEVGCSLDIKRRELKCGDGLFLFNDVNDWTHKYKFHPEDPKLL  816

Query  68    ATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSH  127
             A+LI ++HQ+G CGLSSV+++EHRMW S   EINA+ +EN VDL+VVV++S   Y  GSH
Sbjct  817   ASLIKKSHQEGRCGLSSVNEVEHRMWNSIKTEINAMFEENGVDLSVVVKDSKLHYKMGSH  876

Query  128   AFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGV  187
             AFP+ +  L  GWK WGK+++F P + N +FIIDG S+ +CPF  R+WN+  VEEFG G+
Sbjct  877   AFPKVEEGLSLGWKNWGKSLVFEPKQSNVSFIIDGTSE-DCPFTNRIWNAFVVEEFGIGM  935

Query  188   YQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYR  247
             + T VF+  + D+TK CD   LGA VKG V+ HGDP  WMES + NGTW + T++    R
Sbjct  936   FTTNVFLTHKVDFTKQCDASLLGAGVKGDVAVHGDPTLWMESRKENGTWQLHTIQMNGLR  995

Query  248   ECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECP  307
             EC WP +HT+ G+ V+ES MF+P+   GP+S HNH  GY VQT+GPW+  PL +KRE CP
Sbjct  996   ECFWPQTHTIHGSSVMESAMFLPKQYGGPVSHHNHYTGYAVQTAGPWNVQPLIVKRETCP  1055

Query  308   GTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTN  367
             GT V VDE+C DR  SVRSTT  GKIIPEWCCRSCT+PPVSFWGPD CWY+ME+RP++ +
Sbjct  1056  GTQVRVDEQCRDRGNSVRSTTSEGKIIPEWCCRSCTLPPVSFWGPDSCWYAMEIRPQNVH  1115

Query  368   EAHLVKSWVVA  378
             E HLV+SW  A
Sbjct  1116  EEHLVRSWASA  1126


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Banzi virus]
Sequence ID: C8XPA8.1 Length: 3393
Range 1: 761 to 1115

Score:463 bits(1191), Expect:3e-148, 
Method:Compositional matrix adjust., 
Identities:211/356(59%), Positives:263/356(73%), Gaps:1/356(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  EVGCS++W Q+E+KCGDG+FV+ D DDW  KY+Y PEDPK MA LI +A + G CGL
Sbjct  761   VGAEVGCSVNWGQKELKCGDGIFVYNDVDDWMHKYKYHPEDPKVMAGLIAKAWEKGACGL  820

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWKT  142
             +SVS+LEH MW     EINAIL+ENE+DLTVVV E+ +VY RGS  FPR ++EL YGW++
Sbjct  821   TSVSELEHVMWVKIASEINAILEENEIDLTVVVHENKSVYRRGSRRFPRVETELTYGWES  880

Query  143   WGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYTK  202
             WGKN I +    N TF +DGK   +C    RVWNS+ +EEFG GV+ T VF+R + D T 
Sbjct  881   WGKNFITDGKVSNNTFHVDGKED-QCASKNRVWNSLEIEEFGFGVFHTNVFLRQKADKTN  939

Query  203   LCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAKV  262
              CDT  +GAAVKG+V+AH DP FWMES+E NGTW I ++E   YRECEWP SHT+ G +V
Sbjct  940   SCDTTLMGAAVKGNVAAHADPGFWMESQENNGTWEIQSIEFTAYRECEWPVSHTVHGTQV  999

Query  263   VESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRAK  322
             +ESDMFMP+ + GP+S  N + GYKVQT+G W      ++RE CP T+VVVD  C DR K
Sbjct  1000  MESDMFMPKGIGGPVSHLNRMQGYKVQTNGAWAYGKTVVQRELCPDTSVVVDSSCSDRGK  1059

Query  323   SVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
             S+RSTT  GK+I EWCCRSCT+PPVS+W  +GCWY+MEVRP  T E HLV+SWV A
Sbjct  1060  SIRSTTTEGKVIKEWCCRSCTLPPVSYWTSEGCWYAMEVRPMKTPEKHLVRSWVTA  1115


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kokobera virus]
Sequence ID: Q32ZD5.1 Length: 3410
Range 1: 780 to 1138

Score:369 bits(947), Expect:1e-115, 
Method:Compositional matrix adjust., 
Identities:173/361(48%), Positives:233/361(64%), Gaps:2/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +  ++  + GC+L  K++E KCG+G+FVF D++ W   Y+Y P  PK +A  I +A ++
Sbjct  780   FLATSVNADSGCALDLKRKEFKCGNGIFVFNDAEAWSHSYRYHPSTPKKLAGSIVRAIEE  839

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G CG+ SV  LEH MW +   EINAIL ENE +L+VVV ES+  Y R +        E+ 
Sbjct  840   GQCGVRSVGRLEHEMWRANAREINAILLENEKNLSVVVLESE--YYRKAKNLMPIGDEMP  897

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             +GWK+WGK     P  +N TF++DG+   ECP  KR WN+ R+E+FG GV+ T V+M   
Sbjct  898   FGWKSWGKKFFEEPQLQNQTFVVDGRVGKECPEEKRSWNNFRIEDFGFGVFTTSVWMEQR  957

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              +YT+ CD   +GAAVKG ++AH D  +W+ES   NG+W +     L  + C WP++HTL
Sbjct  958   TEYTEDCDQKVIGAAVKGELAAHSDLGYWIESRSKNGSWELERAYLLESKSCSWPATHTL  1017

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
                 V ES++ +P+S AGP+S HN   GY  Q  GPWH  PLEI+ E CPGTTVV  E+C
Sbjct  1018  WNGGVEESELIIPKSRAGPVSHHNTRKGYHNQIKGPWHLTPLEIRFESCPGTTVVTTEEC  1077

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
              +R  S+R+TT SGK+I EWCCRSCTMPP+SF   DGCWY ME+RP    E  +VKS V 
Sbjct  1078  GNRGPSLRTTTTSGKVISEWCCRSCTMPPLSFRTADGCWYGMEIRPLKEREETMVKSHVS  1137

Query  378   A  378
             A
Sbjct  1138  A  1138


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus]
Sequence ID: Q32ZE1.1 Length: 3419
Range 1: 766 to 1142

Score:367 bits(943), Expect:4e-115, 
Method:Compositional matrix adjust., 
Identities:173/378(46%), Positives:240/378(63%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
             +N SIS   +        +   +  +VGCS+ + ++E +CG GVF++ D + W  +Y+Y 
Sbjct  766   KNGSISLTCLALGGVMIFLSTAVSADVGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYH  825

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
             P+ P+ +A  + QA ++G+CG+SSVS +E+ MW S   E+NAIL+EN V LTVVV     
Sbjct  826   PDSPRRLAAAVKQAWEEGICGISSVSRMENIMWKSVEGELNAILEENGVQLTVVVGSVKN  885

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
                RG    P P +EL +GWK WGK+     ++ N +F++DG +  ECP   R WNS  V
Sbjct  886   PMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLV  945

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             E+ G GV+ T V+++   DY+  CD   +G AVKG  +AH D  +W+ESE+ N TW +  
Sbjct  946   EDHGFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEK-NDTWRLKR  1004

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
                +  + CEWP SHTL    V ESD+ +P+SLAGP+S HN   GY+ Q  GPWH+  LE
Sbjct  1005  AHLIEMKTCEWPKSHTLWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELE  1064

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             I+ EECPGT V V+E C  R  S+RSTT SG++I EWCCR CTMPP+SF   DGCWY ME
Sbjct  1065  IRFEECPGTKVYVEETCGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGME  1124

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP+   E++LV+S V A
Sbjct  1125  IRPRKEPESNLVRSMVTA  1142


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013]
Sequence ID: A0A024B7W1.1 Length: 3423
Range 1: 787 to 1146

Score:366 bits(940), Expect:1e-114, 
Method:Compositional matrix adjust., 
Identities:169/361(47%), Positives:233/361(64%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  +VGCS+ + ++E +CG GVFV+ D + W  +Y+Y P+ P+ +A  + QA +D
Sbjct  787   FLSTAVSADVGCSVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWED  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+SSVS +E+ MW S   E+NAIL+EN V LTVVV        RG    P P +EL 
Sbjct  847   GICGISSVSRMENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELP  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             +GWK WGK+     ++ N +F++DG +  ECP   R WNS  VE+ G GV+ T V+++  
Sbjct  907   HGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              DY+  CD   +G AVKG  + H D  +W+ESE+ N TW +     +  + CEWP SHTL
Sbjct  967   EDYSLECDPAVIGTAVKGKEAVHSDLGYWIESEK-NDTWRLKRAHLIEMKTCEWPKSHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
                 + ESD+ +P+SLAGP+S HN   GY+ Q  GPWH+  LEI+ EECPGT V V+E C
Sbjct  1026  WTDGIEESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  S+RSTT SG++I EWCCR CTMPP+SF   DGCWY ME+RP+   E++LV+S V 
Sbjct  1086  GTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVT  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/Human/Cambodia/FSS13025/2010]
Sequence ID: A0A142I5B9.1 Length: 3423
Range 1: 787 to 1146

Score:365 bits(936), Expect:4e-114, 
Method:Compositional matrix adjust., 
Identities:168/361(47%), Positives:232/361(64%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  +VGCS+ + ++E +CG GVFV+ D + W  +Y+Y P+ P+ +A  + QA +D
Sbjct  787   FLSTAVSADVGCSVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWED  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+SSVS +E+ MW S   E+NAIL+EN V LTVVV        RG    P P +EL 
Sbjct  847   GICGISSVSRMENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELP  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             +GWK WGK+     ++ N +F++DG +  ECP   R WNS  VE+ G GV+ T V+++  
Sbjct  907   HGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              DY+  CD   +G A KG  + H D  +W+ESE+ N TW +     +  + CEWP SHTL
Sbjct  967   EDYSLECDPAVIGTAAKGKEAVHSDLGYWIESEK-NDTWRLKRAHLIEMKTCEWPKSHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
                 + ESD+ +P+SLAGP+S HN   GY+ Q  GPWH+  LEI+ EECPGT V V+E C
Sbjct  1026  WTDGIEESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  S+RSTT SG++I EWCCR CTMPP+SF   DGCWY ME+RP+   E++LV+S V 
Sbjct  1086  GTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVT  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Dominica/814669/1981]
Sequence ID: P09866.2 Length: 3387
Range 1: 771 to 1126

Score:355 bits(911), Expect:9e-111, 
Method:Compositional matrix adjust., 
Identities:163/357(46%), Positives:225/357(63%), Gaps:1/357(0%)

Query  22    TIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCG  81
             T+  ++GC  SW  +E+KCG G+FV  +   W  +Y++ PE P  +A+ I  AH+DG+CG
Sbjct  771   TVQADMGCVASWSGKELKCGSGIFVVDNVHTWTEQYKFQPESPARLASAILNAHKDGVCG  830

Query  82    LSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWK  141
             + S + LE+ MW    +E+N +L E   DLTVV  +   V  +G  A   P S+LKY WK
Sbjct  831   IRSTTRLENVMWKQITNELNYVLWEGGHDLTVVAGDVKGVLTKGKRALTPPVSDLKYSWK  890

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             TWGK  IF P  +N TF+IDG   +ECP  +R WNS+ VE++G G++ T ++M+     +
Sbjct  891   TWGKAKIFTPEARNSTFLIDGPDTSECPNERRAWNSLEVEDYGFGMFTTNIWMKFREGSS  950

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
             ++CD   + AA+K   + H D  +W+ES + N TW I     +  + C WP +HTL    
Sbjct  951   EVCDHRLMSAAIKDQKAVHADMGYWIESSK-NQTWQIEKASLIEVKTCLWPKTHTLWSNG  1009

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             V+ES M +P+S AGP S+HN+  GY  QT GPWH   LEI   ECPGTTV + E CD R 
Sbjct  1010  VLESQMLIPKSYAGPFSQHNYRQGYATQTVGPWHLGKLEIDFGECPGTTVTIQEDCDHRG  1069

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              S+R+TT SGK++ +WCCRSCTMPP+ F G DGCWY ME+RP    E ++VKS V A
Sbjct  1070  PSLRTTTASGKLVTQWCCRSCTMPPLRFLGEDGCWYGMEIRPLSEKEENMVKSQVTA  1126


>RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain M28]
Sequence ID: P0DOK8.1 Length: 1198
Range 1: 787 to 1146

Score:349 bits(895), Expect:1e-110, 
Method:Compositional matrix adjust., 
Identities:155/361(43%), Positives:228/361(63%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AHQ+
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHQE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW S  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWESVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP  +R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDERRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES  +N TW +        + C WP +HTL
Sbjct  967   EENTDECDGAIIGTAVKGHVAVHSDLSYWIES-RLNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDGVEESELIIPHTIAGPRSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  S+R+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  GKRGPSIRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Thailand/0476/1997]
Sequence ID: Q2YHF2.1 Length: 3387
Range 1: 771 to 1126

Score:354 bits(909), Expect:2e-110, 
Method:Compositional matrix adjust., 
Identities:162/357(45%), Positives:226/357(63%), Gaps:1/357(0%)

Query  22    TIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCG  81
             T+  ++GC +SW  +E+KCG G+FV  +   W  +YQ+ PE P  +A+ I  AH+DG+CG
Sbjct  771   TVQADMGCVVSWTGKELKCGSGIFVTDNVHTWTEQYQFQPESPARLASAILNAHKDGVCG  830

Query  82    LSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWK  141
             + S + LE+ MW    +E+N +L E   DLTVV  +   V ++G  A   P ++LKY WK
Sbjct  831   IRSTTRLENVMWKQITNELNYVLWEGGHDLTVVAGDVKGVLVKGKRALTPPVNDLKYSWK  890

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             TWGK  IF P  KN TF+IDG   +ECP  +R WN + VE++G G++ T ++M+     +
Sbjct  891   TWGKAKIFTPEAKNSTFLIDGPDTSECPNERRAWNFLEVEDYGFGMFTTSIWMKFREGSS  950

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
             ++CD   + AA+K   + H D  +W+ES + N TW I     +  + C WP +HTL    
Sbjct  951   EVCDHRLMSAAIKDQKAVHADMGYWLESSK-NQTWQIEKASLIEVKTCLWPKTHTLWSNG  1009

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             V+ES M +P++ AGP S+HN+  GY  QT GPWH   LEI   ECPGTTV + E CD R 
Sbjct  1010  VLESQMLIPKAYAGPFSQHNYRQGYATQTMGPWHLGKLEIDFGECPGTTVTIQEDCDHRG  1069

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              S+R+TT SGK++ +WCCRSCTMPP+ F G DGCWY ME+RP    E ++VKS V A
Sbjct  1070  PSLRTTTASGKLVTQWCCRSCTMPPLRFLGEDGCWYGMEIRPLSEREENMVKSQVSA  1126


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Thailand/0348/1991]
Sequence ID: Q2YHF0.1 Length: 3387
Range 1: 771 to 1126

Score:353 bits(906), Expect:4e-110, 
Method:Compositional matrix adjust., 
Identities:160/357(45%), Positives:228/357(63%), Gaps:1/357(0%)

Query  22    TIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCG  81
             T+  ++GC++SW  +E+KCG G+FV  +   W  +Y++ PE P  +A+ I  AH+DG+CG
Sbjct  771   TVHADMGCAVSWSGKELKCGSGIFVIDNVHTWTEQYKFQPESPARLASAILNAHKDGVCG  830

Query  82    LSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWK  141
             + S + LE+ MW    +E+N +L E   DLTVV  +   V  +G  A   P ++LKY WK
Sbjct  831   IRSTTRLENVMWKQITNELNYVLWEGGHDLTVVAGDVKGVLSKGKRALAPPVNDLKYSWK  890

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             TWGK  IF P  +N TF++DG   +ECP  +R WN + VE++G G++ T ++M+     +
Sbjct  891   TWGKAKIFTPETRNSTFLVDGPDTSECPNERRAWNFLEVEDYGFGMFTTNIWMKFREGSS  950

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
             ++CD   + AA+K   + H D  +W+ES + N TW I     +  + C WP +HTL    
Sbjct  951   EVCDHRLMSAAIKDQKAVHADMGYWIESSK-NQTWQIEKASLIEVKTCLWPKTHTLWSNG  1009

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             V+ES M +P++ AGPIS+HN+  GY  QT GPWH   LEI   ECPGTTV + E CD R 
Sbjct  1010  VLESQMLIPKAYAGPISQHNYRQGYATQTVGPWHLGKLEIDFGECPGTTVTIQEDCDHRG  1069

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              S+R+TT SGK++ +WCCRSCTMPP+ F G DGCWY ME+RP +  E ++VKS V A
Sbjct  1070  PSLRTTTASGKLVTQWCCRSCTMPPLRFLGEDGCWYGMEIRPLNEKEENMVKSQVSA  1126


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kunjin virus (STRAIN MRM61C)]
Sequence ID: P14335.1 Length: 3433
Range 1: 784 to 1143

Score:353 bits(906), Expect:5e-110, 
Method:Compositional matrix adjust., 
Identities:157/361(43%), Positives:229/361(63%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++E++CG GVF+  D + W  +Y+Y PE P+ +A +I +AH++
Sbjct  784   FLSVNVHADTGCAIDISRQELRCGSGVFIHNDVEAWIDRYKYYPETPQGLAKIIQKAHKE  843

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CGL SVS LEH+MW +  DE+N +L EN VDL++VV++ + +Y            +L+
Sbjct  844   GVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSIVVEKQEGMYKSAPRRLTATTEKLE  903

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF+IDG    ECP   R WN++ VE+FG G+  TR+F+R  
Sbjct  904   IGWKAWGKSILFAPELANNTFVIDGPETKECPTQNRAWNNLEVEDFGFGLTSTRMFLRVR  963

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
                T  CD+  +G AVK +++ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  964   ESNTTECDSKIIGTAVKNNLAIHSDLSYWIES-RFNDTWKLERAVLGEVKSCTWPETHTL  1022

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V+ESD+ +P +LAGP S HN  PGYK Q+ GPW    +EI  + CPGTTV + E C
Sbjct  1023  WGDGVLESDLIIPITLAGPRSNHNRRPGYKTQSQGPWDEGRVEIDFDYCPGTTVTLSESC  1082

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  + R+TT+SGK+I +WCCRSCT+PP+ +   +GCWY ME+RP+  +E  LV+S V 
Sbjct  1083  GHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDNGCWYGMEIRPQRHDEKTLVQSQVN  1142

Query  378   A  378
             A
Sbjct  1143  A  1143


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Murray valley encephalitis virus (strain MVE-1-51)]
Sequence ID: P05769.2 Length: 3434
Range 1: 786 to 1145

Score:353 bits(905), Expect:5e-110, 
Method:Compositional matrix adjust., 
Identities:159/361(44%), Positives:229/361(63%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   +RE+KCG G+F+  D + W  +Y+Y+PE PK +A ++  AH+ 
Sbjct  786   FLATNVHADTGCAIDITRRELKCGSGIFIHNDVEAWIDRYKYLPETPKQLAKVVENAHKS  845

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+  EH+MW S  DE+NA+L EN +DL+VVV++   +Y    +       EL 
Sbjct  846   GICGIRSVNRFEHQMWESVRDELNALLKENAIDLSVVVEKQKGMYRAAPNRLRLTVEELD  905

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+++F     N TF++DG   AECP +KR WNS  +E+FG G+  TR +++  
Sbjct  906   IGWKAWGKSLLFAAELANSTFVVDGPETAECPNSKRAWNSFEIEDFGFGITSTRGWLKLR  965

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD+  +G AVKG+ + H D  +W+ES  +NGTW +        + C WP +HTL
Sbjct  966   EENTSECDSTIIGTAVKGNHAVHSDLSYWIES-GLNGTWKLERAIFGEVKSCTWPETHTL  1024

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V E+++ +P +LAGP SKHN   GYKVQ  GPW    +++  + CPGTTV V E C
Sbjct  1025  WGDAVEETELIIPVTLAGPRSKHNRREGYKVQVQGPWDEEDIKLDFDYCPGTTVTVSEHC  1084

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK++ +WCCRSCT+PP+ F    GCWY ME+RP   +E+ LVKS V 
Sbjct  1085  GKRGPSVRTTTDSGKLVTDWCCRSCTLPPLRFTTASGCWYGMEIRPMKHDESTLVKSRVQ  1144

Query  378   A  378
             A
Sbjct  1145  A  1145


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Singapore/8976/1995]
Sequence ID: Q5UCB8.1 Length: 3387
Range 1: 771 to 1126

Score:352 bits(903), Expect:1e-109, 
Method:Compositional matrix adjust., 
Identities:161/357(45%), Positives:225/357(63%), Gaps:1/357(0%)

Query  22    TIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCG  81
             T+  ++GC +SW  +E+KCG G+FV  +   W  +Y++ PE P  +A+ I  AH+DG+CG
Sbjct  771   TVQADMGCVVSWSGKELKCGSGIFVADNVHTWTEQYKFQPESPARLASAILNAHKDGVCG  830

Query  82    LSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWK  141
             + S + LE+ MW    +E+N +L E   DLTVV  +   V  +G  A   P ++LKY WK
Sbjct  831   IRSTTRLENVMWKQITNELNYVLWEGGHDLTVVAGDVKGVLTKGKRALTPPVNDLKYSWK  890

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             TWGK  IF P  +N TF+IDG   +ECP  +R WN + VE++G G++ T ++M+     +
Sbjct  891   TWGKAKIFTPEARNSTFLIDGPDTSECPNERRAWNFLEVEDYGFGMFTTNIWMKFREGSS  950

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
             ++CD   + AA+K   + H D  +W+ES + N TW I     +  + C WP +HTL    
Sbjct  951   EVCDHRLMSAAIKDQKAVHADMGYWIESSK-NQTWQIEKASLIEVKTCLWPKTHTLWSNG  1009

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             V+ES M +P+S AGP S+HN+  GY  QT GPWH   LEI   ECPGTTV + E CD R 
Sbjct  1010  VLESQMLIPKSYAGPFSQHNYRQGYATQTVGPWHLGKLEIDFGECPGTTVTIQEDCDHRG  1069

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              S+R+TT SGK++ +WCCRSCTMPP+ F G DGCWY ME+RP    E ++VKS V A
Sbjct  1070  PSLRTTTASGKLVTQWCCRSCTMPPLRFLGEDGCWYGMEIRPLSEKEENMVKSQVTA  1126


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Philippines/H241/1956]
Sequence ID: Q58HT7.1 Length: 3387
Range 1: 771 to 1126

Score:352 bits(903), Expect:1e-109, 
Method:Compositional matrix adjust., 
Identities:161/357(45%), Positives:225/357(63%), Gaps:1/357(0%)

Query  22    TIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCG  81
             T+  + GC++SW  +E+KCG G+FV  +   W  +Y++ PE P  +A+ I  AH+DG+CG
Sbjct  771   TVHADTGCAVSWSGKELKCGSGIFVIDNVHTWTEQYKFQPESPARLASAILNAHEDGVCG  830

Query  82    LSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWK  141
             + S + LE+ MW    +E+N +L E   DLTVV  +   V  +G  A   P ++LKY WK
Sbjct  831   IRSTTRLENIMWKQITNELNYVLWEGGHDLTVVAGDVKGVLSKGKRALAPPVNDLKYSWK  890

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             TWGK  IF P  KN TF+IDG   +ECP  +R WN + VE++G G++ T ++M+     +
Sbjct  891   TWGKAKIFTPEAKNSTFLIDGPDTSECPNERRAWNFLEVEDYGFGMFTTNIWMKFREGSS  950

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
             ++CD   + AA+K   + H D  +W+ES + N TW I     +  + C WP +HTL    
Sbjct  951   EVCDHRLMSAAIKDQKAVHADMGYWIESSK-NQTWQIEKASLIEVKTCLWPKTHTLWSNG  1009

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             V+ES M +P++ AGP S+HN+  GY  QT GPWH   LEI   ECPGTTV + E CD R 
Sbjct  1010  VLESQMLIPKAYAGPFSQHNYRQGYATQTVGPWHLGKLEIDFGECPGTTVTIQEDCDHRG  1069

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              S+R+TT SGK++ +WCCRSCTMPP+ F G DGCWY ME+RP    E ++VKS V A
Sbjct  1070  PSLRTTTASGKLVTQWCCRSCTMPPLRFLGEDGCWYGMEIRPLSEKEENMVKSQVSA  1126


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Peru/IQT2913/1996]
Sequence ID: Q9WDA6.1 Length: 3391
Range 1: 754 to 1127

Score:352 bits(903), Expect:1e-109, 
Method:Compositional matrix adjust., 
Identities:161/375(43%), Positives:235/375(62%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S + V+  +    +   +  + GC +SWK +E+KCG G+FV  +   W  +Y++ PE 
Sbjct  754   SLSVSLVLVGIVTLYLGVMVQADSGCVVSWKNKELKCGSGIFVTDNVHTWTEQYKFQPES  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             P  +A+ I +AH++G+CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +  
Sbjct  814   PSKLASAIQKAHEEGICGIRSVTRLENLMWKQITSELNHILSENEVKLTIMTGDIKGIMQ  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
              G  +     +EL+Y WKTWGK  + +    N TF+IDG   AECP   R WNS+ VE++
Sbjct  874   VGKRSLRPQPTELRYSWKTWGKAKMLSTELHNQTFLIDGPETAECPNTNRAWNSLEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G GV+ T +++R        CD+  + AA+K + + H D  +W+ES  +N TW I     
Sbjct  934   GFGVFTTNIWLRLREKQDAFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P+++AGP+S+HN+ PGY  QT+GPWH   LE+  
Sbjct  993   IEVKSCHWPKSHTLWSNGVLESEMVIPKNIAGPVSQHNNRPGYHTQTAGPWHLGKLEMDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVV E+C +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP
Sbjct  1053  DFCEGTTVVVTEECGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV S V A
Sbjct  1113  LKEKEENLVSSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus]
Sequence ID: P06935.2 Length: 3430
Range 1: 780 to 1139

Score:352 bits(902), Expect:1e-109, 
Method:Compositional matrix adjust., 
Identities:159/361(44%), Positives:228/361(63%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++E++CG GVF+  D + W  +Y++ PE P+ +A +I +AH +
Sbjct  780   FLSVNVHADTGCAIDIGRQELRCGSGVFIHNDVEAWMDRYKFYPETPQGLAKIIQKAHAE  839

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CGL SVS LEH+MW +  DE+N +L EN VDL+VVV++ + +Y            +L+
Sbjct  840   GVCGLRSVSRLEHQMWEAIKDELNTLLKENGVDLSVVVEKQNGMYKAAPKRLAATTEKLE  899

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+IIF P   N TF+IDG    ECP   R WNS+ VE+FG G+  TR+F+R  
Sbjct  900   MGWKAWGKSIIFAPELANNTFVIDGPETEECPTANRAWNSMEVEDFGFGLTSTRMFLRIR  959

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
                T  CD+  +G AVK +++ H D  +W+ES  +N TW +        + C WP +HTL
Sbjct  960   ETNTTECDSKIIGTAVKNNMAVHSDLSYWIES-GLNDTWKLERAVLGEVKSCTWPETHTL  1018

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V+ESD+ +P +LAGP S HN  PGYK Q  GPW    +EI  + CPGTTV + + C
Sbjct  1019  WGDGVLESDLIIPITLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTISDSC  1078

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
             + R  + R+TT+SGK+I +WCCRSCT+PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1079  EHRGPAARTTTESGKLITDWCCRSCTLPPLRFQTENGCWYGMEIRPTRHDEKTLVQSRVN  1138

Query  378   A  378
             A
Sbjct  1139  A  1139


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease/Helicase NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus strain NY-99]
Sequence ID: Q9Q6P4.2 Length: 3433
Range 1: 784 to 1143

Score:351 bits(901), Expect:2e-109, 
Method:Compositional matrix adjust., 
Identities:156/361(43%), Positives:228/361(63%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++E++CG GVF+  D + W  +Y+Y PE P+ +A +I +AH++
Sbjct  784   FLSVNVHADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKE  843

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CGL SVS LEH+MW +  DE+N +L EN VDL+VVV++ + +Y            +L+
Sbjct  844   GVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLE  903

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+ VE+FG G+  TR+F++  
Sbjct  904   IGWKAWGKSILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVR  963

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
                T  CD+  +G AVK +++ H D  +W+ES  +N TW +        + C WP +HTL
Sbjct  964   ESNTTECDSKIIGTAVKNNLAIHSDLSYWIES-RLNDTWKLERAVLGEVKSCTWPETHTL  1022

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  ++ESD+ +P +LAGP S HN  PGYK Q  GPW    +EI  + CPGTTV + E C
Sbjct  1023  WGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESC  1082

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  + R+TT+SGK+I +WCCRSCT+PP+ +    GCWY ME+RP+  +E  LV+S V 
Sbjct  1083  GHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVN  1142

Query  378   A  378
             A
Sbjct  1143  A  1143


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Tembusu virus]
Sequence ID: G1CRV4.1 Length: 3425
Range 1: 781 to 1140

Score:351 bits(900), Expect:2e-109, 
Method:Compositional matrix adjust., 
Identities:162/361(45%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GCS+   ++E+KCG G+FVF D + W   Y+Y P  P+ +A ++ +AH+ 
Sbjct  781   FLAVNVNADTGCSIDLARKELKCGQGMFVFNDVEAWKDNYKYYPSTPRRLAKVVAEAHEA  840

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SVS LEH MW S   E+NAIL++N +DLTVVV+E+   Y + +   P    EL 
Sbjct  841   GICGIRSVSRLEHNMWVSIKHELNAILEDNAIDLTVVVEENPGRYGKTNQRLPNVDGELM  900

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             YGWK WGK+I  +P   N TF+IDG    E P  +R WNS+++E+FG GV  T+V+M   
Sbjct  901   YGWKKWGKSIFSSPKMSNNTFVIDGPKTKEYPDERRAWNSMKIEDFGFGVLSTKVWMEMR  960

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CDT  +G A+KG+ + H D  +W+ES+  NG+W +        + C WP +HTL
Sbjct  961   TENTTDCDTAVMGTAIKGNRAVHSDLSYWIESKN-NGSWKLERAVLGEVKSCTWPETHTL  1019

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
                 VVES++ +P++L GP S HN   GYKVQ+SGPW    + I  + CPGTTV V   C
Sbjct  1020  WSDSVVESELIIPKTLGGPKSHHNTRTGYKVQSSGPWDEKEIVIDFDYCPGTTVTVTSSC  1079

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
              DR  S R+TT SGK+I +WCCRSCT PP+ F    GCWY ME+RP    +  L+KS V+
Sbjct  1080  RDRGPSARTTTASGKLITDWCCRSCTAPPLRFVTKSGCWYGMEIRPTAHGDDMLIKSKVM  1139

Query  378   A  378
             A
Sbjct  1140  A  1140


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Puerto Rico/PR159-S1/1969]
Sequence ID: P12823.1 Length: 3388
Range 1: 754 to 1127

Score:350 bits(899), Expect:4e-109, 
Method:Compositional matrix adjust., 
Identities:161/375(43%), Positives:233/375(62%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S + V+  +    +   +  + GC +SWK +E+KCG G+FV  +   W  +Y++ PE 
Sbjct  754   SLSVSLVLVGIVTLYLGVMVQADSGCVVSWKNKELKCGSGIFVTDNVHTWTEQYKFQPES  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             P  +A+ I +AH++G+CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +  
Sbjct  814   PSKLASAIQKAHEEGICGIRSVTRLENLMWKQITSELNHILSENEVKLTIMTGDIKGIMQ  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
              G  +     +EL+Y WKTWGK  + +    N TF+IDG   AECP   R WNS+ VE++
Sbjct  874   VGKRSLRPQPTELRYSWKTWGKAKMLSTELHNQTFLIDGPETAECPNTNRAWNSLEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G GV+ T +++R        CD+  + AA+K + + H D  +W+ES  +N TW I     
Sbjct  934   GFGVFTTNIWLRLREKQDAFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P++ AGP+S+HN+ PGY  QT+GPWH   LE+  
Sbjct  993   IEVKSCHWPKSHTLWSNGVLESEMVIPKNFAGPVSQHNNRPGYHTQTAGPWHLGKLEMDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVV E C +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP
Sbjct  1053  DFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV S V A
Sbjct  1113  LKEKEENLVSSLVTA  1127


>RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain JAOARS982]
Sequence ID: P0DOH8.1 Length: 1198
Range 1: 787 to 1146

Score:344 bits(883), Expect:5e-109, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  967   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDGVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  GKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain SA(V)]
Sequence ID: P0DOH9.1 Length: 1198
Range 1: 787 to 1146

Score:344 bits(883), Expect:5e-109, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  967   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDDVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  GKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain SA-14]
Sequence ID: P0DOH7.1 Length: 1198
Range 1: 787 to 1146

Score:344 bits(883), Expect:6e-109, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  967   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDDVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  SKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVMHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain M28]
Sequence ID: G3FEX6.1 Length: 3432
Range 1: 787 to 1146

Score:350 bits(897), Expect:6e-109, 
Method:Compositional matrix adjust., 
Identities:155/361(43%), Positives:228/361(63%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AHQ+
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHQE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW S  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWESVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP  +R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDERRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES  +N TW +        + C WP +HTL
Sbjct  967   EENTDECDGAIIGTAVKGHVAVHSDLSYWIES-RLNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDGVEESELIIPHTIAGPRSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  S+R+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  GKRGPSIRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/16681/84]
Sequence ID: P29990.1 Length: 3391
Range 1: 754 to 1127

Score:350 bits(897), Expect:6e-109, 
Method:Compositional matrix adjust., 
Identities:160/375(43%), Positives:233/375(62%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S   V+  +    +   +  + GC +SWK +E+KCG G+F+  +   W  +Y++ PE 
Sbjct  754   SLSVTLVLVGIVTLYLGVMVQADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPES  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             P  +A+ I +AH++G+CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +  
Sbjct  814   PSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQ  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
              G  +     +ELKY WKTWGK  + +    N TF+IDG   AECP   R WNS+ VE++
Sbjct  874   AGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G GV+ T ++++ +      CD+  + AA+K + + H D  +W+ES  +N TW I     
Sbjct  934   GFGVFTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P++LAGP+S+HN+ PGY  Q +GPWH   LE+  
Sbjct  993   IEVKNCHWPKSHTLWSNGVLESEMIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVV E C +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP
Sbjct  1053  DFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV S V A
Sbjct  1113  LKEKEENLVNSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease NS3; AltName: Full=Non-structural protein 3 [Dengue virus 2 Tonga/EKB194/1974]
Sequence ID: P27914.1 Length: 1683
Range 1: 474 to 847

Score:349 bits(895), Expect:7e-109, 
Method:Compositional matrix adjust., 
Identities:161/375(43%), Positives:233/375(62%), Gaps:1/375(0%)

Query  4    SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
            S+S + V+  +    +   +  + GC +SWK +E+KCG G+FV  +   W  +Y++ PE 
Sbjct  474  SLSVSLVLVGIVTLYLGVMVQADSGCVVSWKNKELKCGSGIFVTDNVHTWTEQYKFQPES  533

Query  64   PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
            P  +A+ I +AH++G+CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +  
Sbjct  534  PSKLASAIQKAHEEGICGIRSVTRLENLMWKQITSELNHILSENEVKLTIMTGDIKGIMQ  593

Query  124  RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
             G  +     +EL+Y WKTWGK  + +    N TF+IDG   AECP   R WNS+ VE++
Sbjct  594  VGKRSLRPQPTELRYSWKTWGKAKMLSTELHNQTFLIDGPETAECPNTNRAWNSLEVEDY  653

Query  184  GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
            G GV+ T +++R        CD+  + AA+K + + H D  +W+ES  +N TW I     
Sbjct  654  GFGVFTTNIWLRLREKQDVFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASF  712

Query  244  LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
            +  + C WP SHTL    V+ES+M +P++ AGP+S+HN+ PGY  QT+GPWH   LE+  
Sbjct  713  IEVKSCHWPKSHTLWSNGVLESEMVIPKNFAGPVSQHNNRPGYYTQTAGPWHLGKLEMDF  772

Query  304  EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
            + C GTTVVV E C +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP
Sbjct  773  DFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRP  832

Query  364  KHTNEAHLVKSWVVA  378
                E +LV S V A
Sbjct  833  LKEKEENLVSSLVTA  847


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Rocio virus]
Sequence ID: Q32ZD4.1 Length: 3425
Range 1: 779 to 1139

Score:348 bits(894), Expect:2e-108, 
Method:Compositional matrix adjust., 
Identities:156/362(43%), Positives:227/362(62%), Gaps:2/362(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   +RE+KCG G+F+  D + W   Y+Y P  PK  A +IH+A+++
Sbjct  779   FLAMNVHADTGCAIDITRRELKCGSGIFIHNDVETWRDNYKYHPSTPKNFAKIIHKAYKE  838

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ S S LEH MW     E+NAIL++NEVDL+VVV+E   +Y +          E+ 
Sbjct  839   GICGVRSASRLEHEMWKHIAPELNAILEDNEVDLSVVVEEHKGIYKKAPLRLENTSDEMH  898

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             +GWK WGK+ +F     N TF++DG    ECP  +R WNS+ +E+FG G+  T+VF++  
Sbjct  899   FGWKNWGKSFLFKTQMANSTFVVDGPETKECPTERRAWNSLEIEDFGVGIMSTKVFLKVN  958

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              D T++CD+  +G A+KG+ + H D  +W+ES + N +W +        R C WP SHTL
Sbjct  959   GDKTEVCDSMVMGTAIKGNRAVHSDLGYWIESGK-NTSWRLERAVLGEVRSCTWPESHTL  1017

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNV-PLEIKREECPGTTVVVDEK  316
                 V +SD+ +P +L GP + HN   GYK Q  GPW+   P+ I+  ECPGT V  +E 
Sbjct  1018  WNEGVEDSDLIIPPTLGGPRTHHNKREGYKTQLKGPWNEEGPIIIEFGECPGTKVTQEES  1077

Query  317   CDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWV  376
             C +RA S R+TT SGK+I +WCC++CTMPP+ F   +GCWY ME+RPKH +E  L+KS V
Sbjct  1078  CRNRAASARTTTASGKVIRDWCCKNCTMPPLRFTTKNGCWYGMEIRPKHESEETLIKSKV  1137

Query  377   VA  378
              A
Sbjct  1138  TA  1139


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Jamaica/1409/1983]
Sequence ID: P07564.2 Length: 3391
Range 1: 769 to 1127

Score:348 bits(892), Expect:3e-108, 
Method:Compositional matrix adjust., 
Identities:157/360(44%), Positives:227/360(63%), Gaps:1/360(0%)

Query  19    ICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDG  78
             + A +  + GC +SWK +E+KCG G+F+  +   W  +Y++ PE P  +A+ I +AH++G
Sbjct  769   LGAMVQADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEG  828

Query  79    LCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKY  138
             +CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +   G  +     +ELKY
Sbjct  829   ICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKY  888

Query  139   GWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEF  198
              WKTWGK  + +    N TF+IDG   AECP   R WNS+ VE++G GV+ T ++++   
Sbjct  889   SWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLRE  948

Query  199   DYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLD  258
                  CD+  + AA+K + + H D  +W+ES  +N TW +     +  + C WP SHTL 
Sbjct  949   KQDVFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKMEKASFIEVKSCHWPKSHTLW  1007

Query  259   GAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCD  318
                V+ES+M +P++ AGP+S+HN+ PGY  QT+GPWH   LE+  + C GTTVVV E C 
Sbjct  1008  SNGVLESEMIIPKNFAGPVSQHNYRPGYHTQTAGPWHLGKLEMDFDFCEGTTVVVTEDCG  1067

Query  319   DRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
             +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP    E +LV S V A
Sbjct  1068  NRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/NGS-C/1944]
Sequence ID: P14340.2 Length: 3391
Range 1: 773 to 1127

Score:348 bits(892), Expect:3e-108, 
Method:Compositional matrix adjust., 
Identities:157/356(44%), Positives:225/356(63%), Gaps:1/356(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  + GC +SWK +E+KCG G+F+  +   W  +Y++ PE P  +A+ I +AH++G+CG+
Sbjct  773   VQADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGI  832

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELKYGWKT  142
              SV+ LE+ MW     E+N IL ENEV LT++  +   +   G  +     +ELKY WKT
Sbjct  833   RSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLQPQPTELKYSWKT  892

Query  143   WGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYTK  202
             WGK  + +    N TF+IDG   AECP   R WNS+ VE++G GV+ T ++++       
Sbjct  893   WGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLREKQDV  952

Query  203   LCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAKV  262
              CD+  + AA+K + + H D  +W+ES  +N TW I     +  + C WP SHTL    V
Sbjct  953   FCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASFIEVKSCHWPKSHTLWSNGV  1011

Query  263   VESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRAK  322
             +ES+M +P++ AGP+S+HN+ PGY  QT+GPWH   LE+  + C GTTVVV E C +R  
Sbjct  1012  LESEMIIPKNFAGPVSQHNYRPGYHTQTAGPWHLGKLEMDFDFCEGTTVVVTEDCGNRGP  1071

Query  323   SVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
             S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP    E +LV S V A
Sbjct  1072  SLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 16681-PDK53]
Sequence ID: P29991.1 Length: 3391
Range 1: 754 to 1127

Score:347 bits(891), Expect:5e-108, 
Method:Compositional matrix adjust., 
Identities:160/375(43%), Positives:231/375(61%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S   V+  +    +   +  + GC +SWK +E+KCG G+F+  +   W  +Y++ PE 
Sbjct  754   SLSVTLVLVGIVTLYLGVMVQADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPES  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             P  +A+ I +AH++ +CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +  
Sbjct  814   PSKLASAIQKAHEEDICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQ  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
              G  +     +ELKY WKTWGK  + +    N TF IDG   AECP   R WNS+ VE++
Sbjct  874   AGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFFIDGPETAECPNTNRAWNSLEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G GV+ T ++++ +      CD+  + AA+K + + H D  +W+ES  +N TW I     
Sbjct  934   GFGVFTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P++LAGP+SKHN+ PGY  Q +GPWH   LE+  
Sbjct  993   IEVKNCHWPKSHTLWSNGVLESEMIIPKNLAGPVSKHNYRPGYHTQITGPWHLGKLEMDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVV E C +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP
Sbjct  1053  DFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV S V A
Sbjct  1113  LKEKEENLVNSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3 [Japanese encephalitis virus strain Nakayama]
Sequence ID: P14403.1 Length: 1440
Range 1: 715 to 1074

Score:345 bits(884), Expect:5e-108, 
Method:Compositional matrix adjust., 
Identities:155/361(43%), Positives:225/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  715   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  774

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  775   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  834

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNSI +E+FG G+  TRV+++  
Sbjct  835   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSIEIEDFGFGITSTRVWLKIR  894

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  895   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  953

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  954   WGDGVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1013

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1014  GKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1073

Query  378   A  378
             A
Sbjct  1074  A  1074


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/0168/1979]
Sequence ID: P14337.2 Length: 3391
Range 1: 754 to 1127

Score:347 bits(890), Expect:6e-108, 
Method:Compositional matrix adjust., 
Identities:159/375(42%), Positives:233/375(62%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S + V+  +    +   +  + GC +SWK +E+KCG G+F+  +   W  +Y++ PE 
Sbjct  754   SLSVSLVLVGIVTLYLGVMVQADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPES  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             P  +A+ I +A ++G+CG+ SV+ LE+ MW     E+N IL ENEV LT++  +   +  
Sbjct  814   PSKLASAIQKAQEEGICGIRSVTRLENLMWKQITPELNHILAENEVKLTIMTGDIKGIMQ  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
              G  +     +ELKY WKTWGK  + +    N TF+IDG   AECP   R WNS+ VE++
Sbjct  874   AGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G GV+ T ++++ +      CD+  + AA+K + + H D  +W+ES  +N TW I     
Sbjct  934   GFGVFTTNIWLKLKEKQDAFCDSKLMSAAIKDNRAVHADMGYWIES-ALNDTWKIEKASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P++LAGP+S+HN+ PGY  Q +GPWH   LE+  
Sbjct  993   IEVKNCHWPKSHTLWSNGVLESEMIIPKNLAGPVSQHNYRPGYHTQIAGPWHLGKLEMDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVV E C +R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME+RP
Sbjct  1053  DFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV S V A
Sbjct  1113  LKEKEENLVNSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Usutu virus]
Sequence ID: Q5WPU5.1 Length: 3434
Range 1: 786 to 1145

Score:346 bits(888), Expect:1e-107, 
Method:Compositional matrix adjust., 
Identities:156/361(43%), Positives:224/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   +RE++CG G+F+  D + W  +Y+++PE PK +A +I QAH  
Sbjct  786   FLATNVHADSGCAIDVGRRELRCGQGIFIHNDVEAWVDRYKFMPETPKQLAKVIEQAHAK  845

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CGL SVS LEH MW +  DE+N +L EN VDL+VVV++   +Y            E +
Sbjct  846   GICGLRSVSRLEHVMWENIRDELNTLLRENAVDLSVVVEKPKGMYKSAPQRLALTSEEFE  905

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+++F P   N TF++DG    ECP  KR WNS+ +E+FG G+  TRV+++  
Sbjct  906   IGWKAWGKSLVFAPELANHTFVVDGPETKECPDAKRAWNSLEIEDFGFGIMSTRVWLKVR  965

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
                T  CD+  +G AVKG ++ H D  +W+ES + N TW +        + C WP +HTL
Sbjct  966   EHNTTDCDSSIIGTAVKGDIAVHSDLSYWIESHK-NTTWRLERAVFGEIKSCTWPETHTL  1024

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
                 VVESD+ +P +LAGP S HN   GYKVQ+ GPW    + +  + CPGTTV + E C
Sbjct  1025  WSDGVVESDLVVPVTLAGPKSNHNRREGYKVQSQGPWDEEDIVLDFDYCPGTTVTITEAC  1084

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  S+R+TT SG+++ +WCCRSCT+PP+ +   +GCWY ME+RP   +E  LVKS V 
Sbjct  1085  GKRGPSIRTTTSSGRLVTDWCCRSCTLPPLRYRTKNGCWYGMEIRPMKHDETTLVKSSVS  1144

Query  378   A  378
             A
Sbjct  1145  A  1145


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [St. Louis encephalitis virus (strain MS1-7)]
Sequence ID: P09732.2 Length: 3412
Range 1: 782 to 1141

Score:346 bits(888), Expect:1e-107, 
Method:Compositional matrix adjust., 
Identities:158/361(44%), Positives:223/361(61%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +  ++  + GC++  ++RE+KCG G+FV+ D + W S Y+Y P  P  +A +I +AH +
Sbjct  782   FLATSVQADSGCAIDLQRRELKCGGGIFVYNDVEKWKSDYKYFPLTPTGLAHVIQEAHAN  841

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ S S LEH MW +   E+NAI ++NE+DL+VVVQE    Y R      + + EL 
Sbjct  842   GICGIRSTSRLEHLMWENIQRELNAIFEDNEIDLSVVVQEDPKYYKRAPRRLKKLEDELD  901

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             YGWK WGK +   P   N TF++DG    ECP   R WNS +VE+FG G+  TR+++   
Sbjct  902   YGWKKWGKTLFVEPRLGNNTFVVDGPETKECPTANRAWNSFKVEDFGFGMVFTRLWLTIR  961

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD+  +G A+KG  + H D  +W+ES++ N TW +        + C WP +HTL
Sbjct  962   EENTTECDSAIIGTAIKGDRAVHSDLSYWIESKK-NETWQLERAVMGEVKSCTWPETHTL  1020

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  VVES+M +P +L GP S HN   GY  QT GPW    + +  + CPGTTV V E C
Sbjct  1021  WGDGVVESEMIIPVTLGGPKSHHNKRNGYHTQTKGPWSEGEITLDFDYCPGTTVTVTEHC  1080

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
              +R  S+R+TT SGK++ +WCCRSC++PP+ +   DGCWY ME+RP    EA LVKS V 
Sbjct  1081  GNRGASLRTTTASGKLVTDWCCRSCSLPPLRYTTKDGCWYGMEIRPVKEEEAKLVKSRVT  1140

Query  378   A  378
             A
Sbjct  1141  A  1141


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Martinique/1243/1999]
Sequence ID: Q6YMS3.1 Length: 3390
Range 1: 749 to 1125

Score:346 bits(888), Expect:1e-107, 
Method:Compositional matrix adjust., 
Identities:165/378(44%), Positives:235/378(62%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
             +N S+S + +   +    + A +  ++GC ++WK +E+KCG G+FV  +   W  +Y++ 
Sbjct  749   KNTSMSFSCIAIGIITLYLGAVVQADMGCVINWKGKELKCGSGIFVTNEVHTWTEQYKFQ  808

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
              + PK +AT I  A ++G+CG+ S + +E+ +W    +E+N IL EN + LTVVV +   
Sbjct  809   ADSPKRLATAIAGAWENGVCGIRSTTRMENLLWKQIANELNYILWENNIKLTVVVGDIIG  868

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             V  +G         ELKY WKTWGK  I     +N +FIIDG +  ECP   R WN   V
Sbjct  869   VLEQGKRTLTPQPMELKYSWKTWGKAKIVTAETQNSSFIIDGPNTPECPSASRAWNVWEV  928

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             E++G GV+ T ++++    YT+LCD   + AAVK   + H D  +W+ES++ NG+W +  
Sbjct  929   EDYGFGVFTTNIWLKLREVYTQLCDHRLMSAAVKDERAVHADMGYWIESQK-NGSWKLEK  987

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
                +  + C WP SHTL    V+ESDM +P+SLAGPIS+HNH PGY  QT+GPWH   LE
Sbjct  988   ASLIEVKTCTWPKSHTLWSNGVLESDMIIPKSLAGPISQHNHRPGYHTQTAGPWHLGKLE  1047

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +    C GTTVV+ E C  R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME
Sbjct  1048  LDFNYCEGTTVVITENCGTRGPSLRTTTVSGKLIHEWCCRSCTLPPLRYMGEDGCWYGME  1107

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP    E ++VKS V A
Sbjct  1108  IRPISEKEENMVKSLVSA  1125


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 China/80-2/1980]
Sequence ID: Q99D35.1 Length: 3390
Range 1: 749 to 1125

Score:346 bits(887), Expect:1e-107, 
Method:Compositional matrix adjust., 
Identities:164/378(43%), Positives:234/378(61%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
             +N S+S + +   +    +   +  ++GC ++WK +E+KCG G+FV  +   W  +Y++ 
Sbjct  749   KNTSMSFSCIAIGIITLYLGVVVQADMGCVINWKGKELKCGSGIFVTNEVHTWTEQYKFQ  808

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
              + PK +AT I  A ++G+CG+ S + +E+ +W    +E+N IL EN + LTVVV +   
Sbjct  809   ADSPKRLATAIAGAWENGVCGIRSTTRMENLLWKQIANELNYILWENNIKLTVVVGDITG  868

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             V  +G         ELKY WKTWGK  I     +N +FIIDG S  ECP   R WN   V
Sbjct  869   VLEQGKRTLTPQPMELKYSWKTWGKAKIVTAETQNSSFIIDGPSTPECPSASRAWNVWEV  928

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             E++G GV+ T ++++    YT+LCD   + AAVK   + H D  +W+ES++ NG+W +  
Sbjct  929   EDYGFGVFTTNIWLKLREVYTQLCDHRLMSAAVKDERAVHADMGYWIESQK-NGSWKLEK  987

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
                +  + C WP SHTL    V+ESDM +P+SLAGPIS+HNH PGY  QT+GPWH   LE
Sbjct  988   ASLIEVKTCTWPKSHTLWSNGVLESDMIIPKSLAGPISQHNHRPGYHTQTAGPWHLGKLE  1047

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +    C GTTVV+ E C  R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME
Sbjct  1048  LDFNYCEGTTVVISENCGTRGPSLRTTTVSGKLIHEWCCRSCTLPPLRYMGEDGCWYGME  1107

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP +  E ++VKS   A
Sbjct  1108  IRPINEKEENMVKSLASA  1125


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA(V)]
Sequence ID: P19110.1 Length: 3432
Range 1: 787 to 1146

Score:345 bits(886), Expect:2e-107, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  967   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDDVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  GKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain JAOARS982]
Sequence ID: P32886.1 Length: 3432
Range 1: 787 to 1146

Score:345 bits(886), Expect:2e-107, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  967   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDGVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  GKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA-14]
Sequence ID: P27395.1 Length: 3432
Range 1: 787 to 1146

Score:345 bits(886), Expect:2e-107, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:226/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   ++EM+CG G+FV  D + W  +Y+Y+PE P+++A ++H+AH++
Sbjct  787   FLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKE  846

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW +  DE+N +L EN VDL+VVV +    Y          + + +
Sbjct  847   GVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFE  906

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
              GWK WGK+I+F P   N TF++DG    ECP   R WNS+++E+FG G+  TRV+++  
Sbjct  907   MGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIR  966

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
              + T  CD   +G AVKG V+ H D  +W+ES   N TW +        + C WP +HTL
Sbjct  967   EESTDECDGAIIGTAVKGHVAVHSDLSYWIES-RYNDTWKLERAVFGEVKSCTWPETHTL  1025

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
              G  V ES++ +P ++AGP SKHN   GYK Q  GPW    + +  + CPGT V + E C
Sbjct  1026  WGDDVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDC  1085

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  SVR+TTDSGK+I +WCCRSC++PP+ F   +GCWY ME+RP   +E  LV+S V 
Sbjct  1086  SKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVMHDETTLVRSQVD  1145

Query  378   A  378
             A
Sbjct  1146  A  1146


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Sri Lanka/1266/2000]
Sequence ID: Q6YMS4.1 Length: 3390
Range 1: 749 to 1125

Score:345 bits(884), Expect:4e-107, 
Method:Compositional matrix adjust., 
Identities:164/378(43%), Positives:236/378(62%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
             +N S+S + +   +    + A +  ++GC ++WK +E+KCG G+FV  +   W  +Y++ 
Sbjct  749   KNTSMSFSCIAIGIITLYLGAVVQADMGCVINWKGKELKCGSGIFVTNEVHTWTEQYKFQ  808

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
              + PK +AT I  A ++G+CG+ S + +E+ +W    +E+N IL EN + LTVVV ++  
Sbjct  809   ADSPKRLATAIAGAWENGVCGIRSTTRMENLLWKQIANELNYILWENNIKLTVVVGDTLG  868

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             V  +G         ELKY WKTWGK  I     +N +FIIDG +  ECP   R WN   V
Sbjct  869   VLEQGKRTLTPQPMELKYSWKTWGKAKIVTAETQNSSFIIDGPNTPECPSASRAWNVWEV  928

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             E++G GV+ T ++++    YT+LCD   + AAVK   + H D  +W+ES++ NG+W +  
Sbjct  929   EDYGFGVFTTNIWLKLREVYTQLCDHRLMSAAVKDERAVHADMGYWIESQK-NGSWKLEK  987

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
                +  + C WP SHTL    V+ESDM +P+SLAGPIS+HN+ PGY  QT+GPWH   LE
Sbjct  988   ASLIEVKTCTWPKSHTLWTNGVLESDMIIPKSLAGPISQHNYRPGYHTQTAGPWHLGKLE  1047

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +    C GTTVV+ E C  R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME
Sbjct  1048  LDFNYCEGTTVVITESCGTRGPSLRTTTVSGKLIHEWCCRSCTLPPLRYMGEDGCWYGME  1107

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP    E ++VKS V A
Sbjct  1108  IRPISEKEENMVKSLVSA  1125


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Singapore/8120/1995]
Sequence ID: Q5UB51.1 Length: 3390
Range 1: 749 to 1125

Score:343 bits(881), Expect:1e-106, 
Method:Compositional matrix adjust., 
Identities:163/378(43%), Positives:235/378(62%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
             +N S+S + +   +    + A +  ++GC ++WK +E+KCG G+FV  +   W  +Y++ 
Sbjct  749   KNTSMSFSCIAIGIITLYLGAVVQADMGCVINWKGKELKCGSGIFVTNEVHTWTEQYKFQ  808

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
              + PK +AT I  A ++G+CG+ S + +E+ +W    +E+N IL EN + LTVVV +   
Sbjct  809   ADSPKRLATAIAGAWENGVCGIRSTTRMENLLWKQIANELNYILWENNIKLTVVVGDIIG  868

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             V  +G         ELKY WKTWGK  I     +N +FIIDG +  ECP   R WN   V
Sbjct  869   VLEQGKRTLTPQPMELKYSWKTWGKAKIVTAETQNSSFIIDGPNTPECPSASRAWNVWEV  928

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             E++G GV+ T ++++    YT+ CD   + AA+K   + H D  +W+ES++ NG+W +  
Sbjct  929   EDYGFGVFTTNIWLKLREVYTQSCDHRLMSAAIKDERAVHADMGYWIESQK-NGSWKLEK  987

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
                +  + C WP SHTL    V+ESDM +P+SLAGPIS+HNH PGY  QT+GPWH   LE
Sbjct  988   ASFIEVKTCTWPKSHTLWSNGVLESDMIIPKSLAGPISQHNHRPGYHTQTAGPWHLGKLE  1047

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +    C GTTVV+ E C  R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME
Sbjct  1048  LDFNYCEGTTVVITENCGTRGPSLRATTVSGKLIHEWCCRSCTLPPLRYMGEDGCWYGME  1107

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP +  E ++VKS V A
Sbjct  1108  IRPVNEKEENMVKSLVSA  1125


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Philippines/H87/1956]
Sequence ID: P27915.1 Length: 3390
Range 1: 749 to 1125

Score:343 bits(880), Expect:1e-106, 
Method:Compositional matrix adjust., 
Identities:163/378(43%), Positives:234/378(61%), Gaps:1/378(0%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
             +N S+S + +   +    +   +  ++GC ++WK +E+KCG G+FV  +   W  +Y++ 
Sbjct  749   KNTSMSFSCIAIGIITLYLGVVVQADMGCVINWKGKELKCGSGIFVTNEVHTWTEQYKFQ  808

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
              + PK +AT I  A ++G+CG+ S + +E+ +W    +E+N IL EN++ LTVVV +   
Sbjct  809   ADSPKRVATAIAGAWENGVCGIRSTTRMENLLWKQIANELNYILWENDIKLTVVVGDITG  868

Query  121   VYLRGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
             V  +G         ELKY WKTWG   I     +N +FIIDG S  ECP   R WN   V
Sbjct  869   VLEQGKRTLTPQPMELKYSWKTWGLAKIVTAETQNSSFIIDGPSTPECPSASRAWNVWEV  928

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
             E++G GV+ T ++++    YT+LCD   + AAVK   + H D  +W+ES++ NG+W +  
Sbjct  929   EDYGFGVFTTNIWLKLREVYTQLCDHRLMSAAVKDERAVHADMGYWIESQK-NGSWKLEK  987

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
                +  + C WP SHTL    V+ESDM +P+SLAGPIS+HNH PGY  QT+GPWH   LE
Sbjct  988   ASLIEVKTCTWPKSHTLWSNGVLESDMIIPKSLAGPISQHNHRPGYHTQTAGPWHLGKLE  1047

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             +    C GTTVV+ E C  R  S+R+TT SGK+I EWCCRSCT+PP+ + G DGCWY ME
Sbjct  1048  LDFNYCEGTTVVISENCGTRGPSLRTTTVSGKLIHEWCCRSCTLPPLRYMGEDGCWYGME  1107

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP +  E ++VKS   A
Sbjct  1108  IRPINEKEENMVKSLASA  1125


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Ilheus virus]
Sequence ID: Q32ZD7.1 Length: 3424
Range 1: 779 to 1139

Score:341 bits(874), Expect:8e-106, 
Method:Compositional matrix adjust., 
Identities:156/362(43%), Positives:219/362(60%), Gaps:2/362(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC++   +RE+KCG G+F+  D + W + Y+Y P  P+  A +I  +   
Sbjct  779   FLAVNVHADTGCAIDMARRELKCGSGIFIHNDVETWRNNYKYHPLTPRGFAKVIQMSKDK  838

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV  LEH MW +   E+NAI ++N VDL+VVV+    +Y R        K E+ 
Sbjct  839   GVCGIRSVGRLEHEMWEAIAPELNAIFEDNGVDLSVVVKGQTGIYKRAPKRLTETKDEMS  898

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             +GWK WGK+ IF+    N TFI+DG    ECP + R WNS+ +E+FG G+  T++F++  
Sbjct  899   FGWKNWGKSFIFSTETANSTFIVDGPESKECPTSDRAWNSLELEDFGFGIISTKIFLKVN  958

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
                   CD+  +G AVKG+ + H D  FW++S + N +W +        + C WP SHTL
Sbjct  959   EQRGNSCDSAVIGTAVKGNEAVHSDLGFWIQSTK-NESWQLERAVLGEVKSCTWPESHTL  1017

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWH-NVPLEIKREECPGTTVVVDEK  316
              G  V ESD+ +P +LAGP S HN  PGYK QT GPWH   PL I+  ECPGTTV  +E 
Sbjct  1018  WGDGVEESDLIIPITLAGPKSHHNMRPGYKTQTKGPWHEETPLVIEFAECPGTTVTQEES  1077

Query  317   CDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWV  376
             C  R  S+R+TT SG+ I  WCC++CT+PP+ F   + CWY +EVRPK  NE  L+KS V
Sbjct  1078  CGGRGPSIRTTTASGRTIRNWCCKNCTLPPLRFMAGENCWYGVEVRPKRENEETLIKSKV  1137

Query  377   VA  378
              A
Sbjct  1138  SA  1139


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Bussuquara virus]
Sequence ID: Q32ZE0.1 Length: 3429
Range 1: 786 to 1145

Score:335 bits(860), Expect:7e-104, 
Method:Compositional matrix adjust., 
Identities:154/361(43%), Positives:224/361(62%), Gaps:1/361(0%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
              +   +  + GC +  +++E+KCG G+F+  D + W  +Y + P  PK +A  + +A   
Sbjct  786   FLSINVSADTGCVVDIERKELKCGSGIFIMNDIEAWRDEYAFHPSGPKALAASVVEAFSQ  845

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKSELK  137
             G+CG+ SV+ LEH+MW S  DE+NAIL+ENE ++T+VV++ +    +G       + ELK
Sbjct  846   GVCGVRSVNRLEHKMWESIADELNAILEENEREITIVVKDMENPAQKGKMRLRPVEKELK  905

Query  138   YGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPE  197
             YGWK WG +     SRKN TF++DG S  ECP + R WNS  +E+FG GV++T V++   
Sbjct  906   YGWKKWGASFFKRASRKNATFLVDGPSGEECPNSNRAWNSFFIEDFGFGVFKTSVWLGLN  965

Query  198   FDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTL  257
                T++CDT  +G  VK   + H D  +W+ES + N TW I+    +  + C WP SHTL
Sbjct  966   EQMTEVCDTKMIGTGVKNDRAVHSDLGYWIESRK-NLTWEISRARLIETKACIWPRSHTL  1024

Query  258   DGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKC  317
                 + E+ + +P+SL GP S+HN   GYK Q +GPW  +PL+IK EECPGT+V V   C
Sbjct  1025  WSDGIEETQLIIPKSLGGPRSRHNMRSGYKTQINGPWDQIPLDIKFEECPGTSVTVTPNC  1084

Query  318   DDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVV  377
               R  S RSTT SGK+I +WCCR C +PP++F   + CWY+ME+RP    E  L++S V 
Sbjct  1085  GGRGPSARSTTASGKVIADWCCRDCILPPLTFRSGETCWYAMEIRPVSEREETLIRSKVS  1144

Query  378   A  378
             A
Sbjct  1145  A  1145


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Brazil/97-11/1997]
Sequence ID: P27909.2 Length: 3392
Range 1: 754 to 1127

Score:334 bits(856), Expect:2e-103, 
Method:Compositional matrix adjust., 
Identities:158/375(42%), Positives:229/375(61%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S   +   +    +   +  + GC ++WK RE+KCG G+FV  +   W  +Y++  + 
Sbjct  754   SLSMTCIAVGMVTLYLGVMVQADSGCVINWKGRELKCGSGIFVTNEVHTWTEQYKFQADS  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             PK ++  I +A ++G+CG+ S + LE+ MW    +E+N IL EN++  TVVV  ++ +  
Sbjct  814   PKRLSAAIGRAWEEGVCGIRSATRLENIMWKQISNELNHILLENDIKFTVVVGNANGILA  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
             +G         E KY WK+WGK  I     +N TFIIDG    ECP  +R WN   VE++
Sbjct  874   QGKKMIRPQPMEHKYSWKSWGKAKIIGADIQNTTFIIDGPDTPECPDEQRAWNIWEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G G++ T ++++    YT++CD   + AA+K S + H D  +W+ESE+ N TW +     
Sbjct  934   GFGIFTTNIWLKLRDSYTQMCDHRLMSAAIKDSKAVHADMGYWIESEK-NETWKLARASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P+   GPIS+HN+ PGY  QT+GPWH   LE+  
Sbjct  993   IEVKTCIWPKSHTLWSNGVLESEMIIPKMYGGPISQHNYRPGYFTQTAGPWHLGKLELDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVVDE C  R  S+R+TT +GKII EWCCRSCT+PP+ F G DGCWY ME+RP
Sbjct  1053  DLCEGTTVVVDEHCGSRGPSLRTTTVTGKIIHEWCCRSCTLPPLRFRGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV+S V A
Sbjct  1113  VKEKEENLVRSMVSA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Nauru/West Pac/1974]
Sequence ID: P17763.2 Length: 3392
Range 1: 754 to 1127

Score:333 bits(854), Expect:3e-103, 
Method:Compositional matrix adjust., 
Identities:159/375(42%), Positives:230/375(61%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S   +   +    +   +  + GC ++WK RE+KCG G+FV  +   W  +Y++  + 
Sbjct  754   SLSMTCIAVGMVTLYLGVMVQADSGCVINWKGRELKCGSGIFVTNEVHTWTEQYKFQADS  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             PK ++  I +A ++G+CG+ S + LE+ MW    +E+N IL EN++  TVVV +   +  
Sbjct  814   PKRLSAAIGKAWEEGVCGIRSATRLENIMWKQISNELNHILLENDMKFTVVVGDVSGILA  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
             +G         E KY WK+WGK  I     +N TFIIDG +  ECP N+R WN   VE++
Sbjct  874   QGKKMIRPQPMEHKYSWKSWGKAKIIGADVQNTTFIIDGPNTPECPDNQRAWNIWEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G G++ T ++++    YT++CD   + AA+K S + H D  +W+ESE+ N TW +     
Sbjct  934   GFGIFTTNIWLKLRDSYTQVCDHRLMSAAIKDSKAVHADMGYWIESEK-NETWKLARASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P+   GPIS+HN+ PGY  QT+GPWH   LE+  
Sbjct  993   IEVKTCIWPKSHTLWSNGVLESEMIIPKIYGGPISQHNYRPGYFTQTAGPWHLGKLELDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVVDE C +R  S+R+TT +GK I EWCCRSCT+PP+ F G DGCWY ME+RP
Sbjct  1053  DLCEGTTVVVDEHCGNRGPSLRTTTVTGKTIHEWCCRSCTLPPLRFKGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LVKS V A
Sbjct  1113  VKEKEENLVKSMVSA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Singapore/S275/1990]
Sequence ID: P33478.2 Length: 3391
Range 1: 753 to 1126

Score:333 bits(853), Expect:5e-103, 
Method:Compositional matrix adjust., 
Identities:159/375(42%), Positives:230/375(61%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S   +   +    +   +  + GC ++WK RE+KCG G+FV  +   W  +Y++  + 
Sbjct  753   SLSMTCIAVGMVTLYLGVMVQADSGCVINWKGRELKCGSGIFVTNEVHTWTEQYKFQADS  812

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             PK ++  I +A ++G+CG+ S + LE+ MW    +E+N IL EN++  TVVV +   +  
Sbjct  813   PKRLSAAIGKAWEEGVCGIRSATRLENIMWKQISNELNHILLENDMKFTVVVGDVVGILA  872

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
             +G         E KY WK+WGK  I     +N TFIIDG    ECP ++R WN   VE++
Sbjct  873   QGKKMIRPQPMEHKYSWKSWGKAKIIGADIQNTTFIIDGPDTPECPDDQRAWNIWEVEDY  932

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G G++ T ++++    YT++CD   + AA+K S + H D  +W+ESE+ N TW +     
Sbjct  933   GFGIFTTNIWLKLRDSYTQMCDHRLMSAAIKDSKAVHADMGYWIESEK-NETWKLARASF  991

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL    V+ES+M +P+   GPIS+HN+ PGY  QT+GPWH   LE+  
Sbjct  992   IEVKTCVWPKSHTLWSNGVLESEMIIPKIYGGPISQHNYRPGYFTQTAGPWHLGKLELDF  1051

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVVDE C +R  S+R+TT +GKII EWCCRSCT+PP+ F G DGCWY ME+RP
Sbjct  1052  DLCEGTTVVVDEHCGNRGPSLRTTTVTGKIIHEWCCRSCTLPPLRFKGEDGCWYGMEIRP  1111

Query  364   KHTNEAHLVKSWVVA  378
                 E +LVKS V A
Sbjct  1112  VKEKEENLVKSMVSA  1126


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (strain HYPR)]
Sequence ID: Q01299.1 Length: 3414
Range 1: 753 to 1128

Score:322 bits(826), Expect:2e-99, 
Method:Compositional matrix adjust., 
Identities:155/378(41%), Positives:234/378(61%), Gaps:3/378(0%)

Query  2     NESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIP  61
             N ++S + ++  +    +   +  +VGC++  ++ E++CG+G+ V+++  +W+  Y Y P
Sbjct  753   NPTMSMSFLLAGVLVLAMTLGVGADVGCAVDTERMELRCGEGLVVWREVSEWYDNYAYYP  812

Query  62    EDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAV  121
             E P  +A+ I +  ++G CG+   + LE  MW S V E+N  L E E +LTV+V + D  
Sbjct  813   ETPGALASAIKETFEEGSCGVVPQNRLEMAMWRSSVTELNLALAEGEANLTVMVDKFDPT  872

Query  122   YLRGS-HAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRV  180
               RG      +   ++K  WK+WG ++I++       F++  + ++ECP  +R      V
Sbjct  873   DYRGGVPGLLKKGKDIKVSWKSWGHSMIWSIPEAPRRFMVGTEGQSECPLERRKTGVFTV  932

Query  181   EEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITT  240
              EFG G+ +T+VF+    + T  CDTG +GAAVK  ++ H D   WM S + +    I  
Sbjct  933   AEFGVGL-RTKVFLDFRQEPTHECDTGVMGAAVKNGMAIHTDQSLWMRSMKNDTGTYIVE  991

Query  241   LEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLE  300
             L   + R C WP+SHT+D A VV+S++F+P SLAGP S +N IPGY  Q  GPW + P+ 
Sbjct  992   LLVTDLRNCSWPASHTIDNADVVDSELFLPASLAGPRSWYNRIPGYSEQVKGPWKHTPIR  1051

Query  301   IKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSME  360
             + REECPGTTV ++ KCD R  SVRSTT+SGK+IPEWCCR+CTMPPV+F     CWY+ME
Sbjct  1052  VIREECPGTTVTINAKCDKRGASVRSTTESGKVIPEWCCRACTMPPVTFRTGTDCWYAME  1111

Query  361   VRPKHTNEAHLVKSWVVA  378
             +RP H ++  LV+S VVA
Sbjct  1112  IRPVH-DQGGLVRSMVVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (WESTERN SUBTYPE)]
Sequence ID: P14336.4 Length: 3414
Range 1: 774 to 1128

Score:322 bits(824), Expect:4e-99, 
Method:Compositional matrix adjust., 
Identities:154/357(43%), Positives:224/357(62%), Gaps:3/357(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  +VGC++  ++ E++CG+G+ V+++  +W+  Y Y PE P  +A+ I +  ++G CG+
Sbjct  774   VGADVGCAVDTERMELRCGEGLVVWREVSEWYDNYAYYPETPGALASAIKETFEEGSCGV  833

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGS-HAFPRPKSELKYGWK  141
                + LE  MW S V E+N  L E E +LTVVV + D    RG      +   ++K  WK
Sbjct  834   VPQNRLEMAMWRSSVTELNLALAEGEANLTVVVDKFDPTDYRGGVPGLLKKGKDIKVSWK  893

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             +WG ++I++       F++  + ++ECP  +R      V EFG G+ +T+VF+    + T
Sbjct  894   SWGHSMIWSIPEAPRRFMVGTEGQSECPLERRKTGVFTVAEFGVGL-RTKVFLDFRQEPT  952

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
               CDTG +GAAVK  ++ H D   WM S + +    I  L   + R C WP+SHT+D A 
Sbjct  953   HECDTGVMGAAVKNGMAIHTDQSLWMRSMKNDTGTYIVELLVTDLRNCSWPASHTIDNAD  1012

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             VV+S++F+P SLAGP S +N IPGY  Q  GPW   P+ + REECPGTTV ++ KCD R 
Sbjct  1013  VVDSELFLPASLAGPRSWYNRIPGYSEQVKGPWKYTPIRVIREECPGTTVTINAKCDKRG  1072

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              SVRSTT+SGK+IPEWCCR+CTMPPV+F     CWY+ME+RP H ++  LV+S VVA
Sbjct  1073  ASVRSTTESGKVIPEWCCRACTMPPVTFRTGTDCWYAMEIRPVH-DQGGLVRSMVVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 2 China/D2-04]
Sequence ID: P30026.1 Length: 1127
Range 1: 754 to 1127

Score:316 bits(810), Expect:6e-99, 
Method:Compositional matrix adjust., 
Identities:152/375(41%), Positives:225/375(60%), Gaps:1/375(0%)

Query  4     SISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPED  63
             S+S + V+  +    + A +  + GC +SWK +E+KCG G+F+  +   W  +Y + PE 
Sbjct  754   SLSVSLVLVGVITLYLGAMVQADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYNFQPES  813

Query  64    PKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYL  123
             P  +A+ + +AH++G+CG+ SV+ LE+ MW     E+  IL E EV LT++  +   +  
Sbjct  814   PSKLASAMRKAHEEGICGIRSVTRLENLMWKQITPELKHILSEIEVKLTIMTGDIKGIMQ  873

Query  124   RGSHAFPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEF  183
              G+ +     +ELK+ W+TW K  +      N TF+IDG   AECP   R WNS+ VE++
Sbjct  874   AGTRSLRPQPTELKFSWETWRKAKMVPTEPHNQTFLIDGPETAECPNTNRAWNSLEVEDY  933

Query  184   GTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEA  243
             G GV+ T ++++        CD+  + AA K + + H D  +W+ES  +N TW +     
Sbjct  934   GFGVFTTNIWLKLREKEDLCCDSKVMSAASKDNRAVHDDMGYWIES-ALNDTWKMEKASF  992

Query  244   LNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKR  303
             +  + C WP SHTL     +ES+M +P+S AGP+S+HN+ PGY  QT+GP H   LE+  
Sbjct  993   IEVKSCHWPKSHTLWINGGLESEMIIPKSFAGPVSQHNYRPGYYTQTAGPRHLGKLEMDF  1052

Query  304   EECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRP  363
             + C GTTVVV E C +R  S+R+TT SGK+I EWCCRS T+PP+   G DGCWY ME+RP
Sbjct  1053  DFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSSTIPPLRIKGEDGCWYGMEIRP  1112

Query  364   KHTNEAHLVKSWVVA  378
                 E +LV S V A
Sbjct  1113  LKEKEENLVTSLVTA  1127


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Langat virus (strain TP21)]
Sequence ID: P29837.2 Length: 3414
Range 1: 774 to 1128

Score:320 bits(821), Expect:1e-98, 
Method:Compositional matrix adjust., 
Identities:152/357(43%), Positives:228/357(63%), Gaps:3/357(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  +VGC++  ++ E++CG+G+ V+++  +W+  Y + PE P  +A+ + +A+++ +CG+
Sbjct  774   VGADVGCAVDTERMELRCGEGLVVWREVSEWYDNYVFHPETPAVLASAVQRAYEEEICGI  833

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESD-AVYLRGSHAFPRPKSELKYGWK  141
                + LE  MW S + E+N  L E E +LTVVV ++D + Y  G         ++K  W+
Sbjct  834   VPQNRLEMAMWRSSLVELNLALAEGEANLTVVVDKADPSDYRGGVPGLLNKGKDIKVSWR  893

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             +WG++++++       F+I  +   ECPF +R    + V EFG G+ +T+VFM    + T
Sbjct  894   SWGRSMLWSVPEAPRRFMIGVEGGRECPFARRKTGVMTVAEFGIGL-RTKVFMDLRQELT  952

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
               CDTG +GAAVK  ++ H D   WM+S + + T  I  L   + R C WP+SHT+D A 
Sbjct  953   TECDTGVMGAAVKNGMAVHTDQSLWMKSIKNDTTVTIVELIVTDLRNCTWPASHTIDNAG  1012

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             VV S +F+P SLAGP S +N IPGY  Q  GPW + P+ IKREECPGT V +D+ CD R 
Sbjct  1013  VVNSKLFLPASLAGPRSTYNVIPGYAEQVRGPWAHTPVRIKREECPGTRVTIDKACDKRG  1072

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              SVRSTT+SGK+IPEWCCR+C +PPV++     CWY+ME+RP HT +  LV+S VVA
Sbjct  1073  ASVRSTTESGKVIPEWCCRTCELPPVTYRTGTDCWYAMEIRPVHT-QGGLVRSMVVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Omsk hemorrhagic fever virus]
Sequence ID: Q7T6D2.1 Length: 3414
Range 1: 774 to 1128

Score:318 bits(815), Expect:6e-98, 
Method:Compositional matrix adjust., 
Identities:151/357(42%), Positives:222/357(62%), Gaps:3/357(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  +VGC++  ++ E++CG+G+ V+++  +W+  Y + PE P  +A+ + +  ++G CG+
Sbjct  774   VGADVGCAVDTERMELRCGEGLVVWREVSEWYDNYAFYPETPAALASALKEMVEEGDCGI  833

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGS-HAFPRPKSELKYGWK  141
                + LE  MW S V E+N  L E + +LTVVV + D    RG      +   ++K  WK
Sbjct  834   VPQNRLEMAMWRSSVSELNLALAEGDANLTVVVDKHDPTDYRGGVPGLLKKGKDMKISWK  893

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             +WG+++I++       F++  +  +ECP  KR      V EFG G+ +T+VF+    + T
Sbjct  894   SWGQSMIWSVPEAPRRFLVGTEGSSECPLAKRRTGVFTVAEFGMGL-RTKVFLDFRQEIT  952

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
             + CDTG +GAAVK  ++ H D   WM+S        I  L   + R C WP+SHT+D A 
Sbjct  953   RECDTGVMGAAVKNGIAVHTDQSLWMKSIRNETGTYIVELLVTDLRNCSWPASHTIDNAD  1012

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             VV+S++F+P SLAGP S +N IPGY  Q  GPW   P++I REECPGT V +D  CD R 
Sbjct  1013  VVDSELFLPASLAGPRSWYNRIPGYSEQVRGPWKYTPIKITREECPGTKVAIDASCDKRG  1072

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              SVRST++SGKIIPEWCCR CT+PPV+F     CWY+ME+RP H ++  LV+S VVA
Sbjct  1073  ASVRSTSESGKIIPEWCCRKCTLPPVTFRTGTDCWYAMEIRPVH-DQGGLVRSMVVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Louping ill virus]
Sequence ID: P22338.2 Length: 3414
Range 1: 774 to 1128

Score:317 bits(813), Expect:1e-97, 
Method:Compositional matrix adjust., 
Identities:152/357(43%), Positives:224/357(62%), Gaps:3/357(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  +VGC++  ++ E++CG+G+ V+++  +W+  Y Y PE P  +A+ + +A ++G CG+
Sbjct  774   VGADVGCAVDTERMELRCGEGLVVWREVSEWYDNYAYYPETPGALASAVKEAFEEGSCGV  833

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKS-ELKYGWK  141
                + LE  MW S V E+N  L E + +LTVVV ++D    RG       K  ++K  W+
Sbjct  834   VPQNRLEMAMWRSSVTELNLALVEGDANLTVVVDKNDPTDYRGGVPGTLKKGKDMKVSWR  893

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             +WG ++I++       F++  + ++ECP  +R      V EFG G+ +T+VF+    + T
Sbjct  894   SWGHSMIWSIPEAPRRFMVGTEGQSECPLERRKTGVFTVAEFGVGL-RTKVFLDFRQEPT  952

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
               CDTG +GAAVK  ++ H D   WM+S   +    I  L   + R C WP+SHT+D A 
Sbjct  953   HECDTGVMGAAVKNDMAVHTDQSLWMKSMRNDTGTYIVELLVTDLRNCSWPASHTIDNAD  1012

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             VV S++F+P SL GP S +N IPGY  Q  GPW + PL + REECPGTTV ++ KC+ R 
Sbjct  1013  VVNSELFLPASLRGPRSWYNRIPGYSEQVKGPWKHTPLRVIREECPGTTVTINAKCEKRG  1072

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              SVRSTT+SGK+IPEWCCR+CTMPPV+F     CWY+ME+RP H  +  LV+S VVA
Sbjct  1073  ASVRSTTESGKVIPEWCCRACTMPPVTFRTGTDCWYAMEIRPVHA-QGGLVRSMVVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (STRAIN SOFJIN)]
Sequence ID: P07720.3 Length: 3412
Range 1: 774 to 1128

Score:310 bits(795), Expect:3e-95, 
Method:Compositional matrix adjust., 
Identities:148/357(41%), Positives:221/357(61%), Gaps:3/357(0%)

Query  23    IONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQDGLCGL  82
             +  +VGC++  ++ E++CG+G+ V+++  +W+  Y Y PE    +A+ I +  ++G CG+
Sbjct  774   VGADVGCAVDTERMELRCGEGLVVWREVSEWYDNYAYYPETLGALASAIKETFEEGTCGI  833

Query  83    SSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGS-HAFPRPKSELKYGWK  141
                + LE  MW S   E+N  L E + +LTVVV + D    RG   +  +   ++K  WK
Sbjct  834   VPQNRLEMAMWRSSATELNLALVEGDANLTVVVDKLDPTDYRGGIPSLLKKGKDIKVSWK  893

Query  142   TWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMRPEFDYT  201
             +WG ++I++       F++  +  +ECP  +R      V EFG G+ +T+VF+    + T
Sbjct  894   SWGHSMIWSVPEAPRLFMVGTEGSSECPLERRKTGVFTVAEFGVGL-RTKVFLDFRQEST  952

Query  202   KLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSHTLDGAK  261
               CDTG +GAAVK  ++ H D   WM+S   +    I  L   + R C WP+SHT+D A+
Sbjct  953   HECDTGVMGAAVKNGMAVHTDQSLWMKSVRNDTGTYIVELLVTDLRNCSWPASHTIDNAE  1012

Query  262   VVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDEKCDDRA  321
             VV+S++F+P SLAGP S +N IPGY  Q  GPW   P+ + REECPGT V ++  CD R 
Sbjct  1013  VVDSELFLPASLAGPRSWYNRIPGYSEQVKGPWKYSPIRVTREECPGTRVTINADCDKRG  1072

Query  322   KSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSWVVA  378
              SVRSTT+SGK+IPEWCCR+CT+PPV+F     CWY+ME+RP H ++  LV+S VVA
Sbjct  1073  ASVRSTTESGKVIPEWCCRTCTLPPVTFRTGTDCWYAMEIRPVH-DQGGLVRSMVVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Tick-borne powassan virus (strain lb)]
Sequence ID: Q04538.1 Length: 3415
Range 1: 768 to 1128

Score:308 bits(788), Expect:2e-94, 
Method:Compositional matrix adjust., 
Identities:150/363(41%), Positives:219/363(60%), Gaps:4/363(1%)

Query  18    LICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYIPEDPKTMATLIHQAHQD  77
             ++   +  + GC++  ++ E++CG+G+ V+K+  +W+  Y Y PE P T+A  + +A + 
Sbjct  768   MMTMGVGADYGCAIDPERMEIRCGEGLVVWKEVSEWYDGYAYHPESPDTLAQALREAFER  827

Query  78    GLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDAVYLRGSHAFPRPKS--E  135
             G+CG+   + LE  MW S   E+N +L E E +LT+VV ++D    RG       K+  E
Sbjct  828   GVCGVVPQNRLEMAMWRSTAPELNLVLSEGEANLTIVVDKTDPADYRGGTPMVLKKTGKE  887

Query  136   LKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSIRVEEFGTGVYQTRVFMR  195
              K  WK+WGK+I+++        ++      ECP  +R      V EFG G+ +T+VF+ 
Sbjct  888   SKVSWKSWGKSILWSVPDSPRRMMMGVDGVGECPLYRRATGVFTVAEFGVGL-RTKVFLD  946

Query  196   PEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMITTLEALNYRECEWPSSH  255
                + +K CDTG +GAAVK   + H D   WM S   +    I  L   + R C WP+SH
Sbjct  947   LRGEASKECDTGVMGAAVKNGKAIHTDQSMWMSSFRNDTGTYIHELILTDLRNCTWPASH  1006

Query  256   TLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVPLEIKREECPGTTVVVDE  315
             T+D   V++S +F+P +LAGP SK+N IPGY  Q  GPW   PL + R+ CPGT+V +D 
Sbjct  1007  TIDNDGVLDSHLFLPVTLAGPRSKYNRIPGYSEQVRGPWDQTPLRVVRDHCPGTSVRIDS  1066

Query  316   KCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYSMEVRPKHTNEAHLVKSW  375
              CD R  SVRSTT+SGKIIPEWCCR+C +PPV+F     CWY+ME+RP H+ +  LV+S 
Sbjct  1067  HCDKRGASVRSTTESGKIIPEWCCRACELPPVTFRSGTDCWYAMEIRPVHS-QGGLVRSM  1125

Query  376   VVA  378
             VVA
Sbjct  1126  VVA  1128


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Alkhumra hemorrhagic fever virus]
Sequence ID: Q91B85.1 Length: 3416
Range 1: 753 to 1130

Score:306 bits(785), Expect:6e-94, 
Method:Compositional matrix adjust., 
Identities:149/380(39%), Positives:221/380(58%), Gaps:4/380(1%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
              N ++S   +I       +   +  ++GC++   + E++CG+G+ V+++  DW+  Y + 
Sbjct  753   RNPTLSVGFLITGGLVLTMTLGVGADMGCAIDANRMELRCGEGLVVWREVTDWYDGYAFH  812

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
             PE P  +A  + +A+++G+CG+   + LE  MW      +N  L E++ +LTVVV   D 
Sbjct  813   PESPPVLAASLKEAYEEGVCGIVPQNRLEMAMWRRVEAVLNLALAESDANLTVVVDRRDP  872

Query  121   VYLRGSHA--FPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSI  178
                RG       R   E+K  WK W ++ +++       F++  +   ECP +KR     
Sbjct  873   SDYRGGKVGILKRSGKEMKTSWKGWSQSFVWSVPESPRRFMVGIEGTGECPLDKRRTGVF  932

Query  179   RVEEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMI  238
              V EFG G+ +T++F+      +  CDTG +GAAVK   + H D   WM+S        I
Sbjct  933   TVAEFGMGM-RTKIFLDLRETSSSDCDTGVMGAAVKSGHAVHTDQSLWMKSHRNATGVFI  991

Query  239   TTLEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVP  298
             + L   + R C WP+SHTLD A VV+S +F+P SLAGP S +NHIPGY  Q  GPW+  P
Sbjct  992   SELIVTDLRNCTWPASHTLDNAGVVDSKLFLPVSLAGPRSHYNHIPGYAEQVRGPWNQTP  1051

Query  299   LEIKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYS  358
             L + RE CPGTTV +D+ CD R  S+RSTT+SGK IPEWCCR+C +PPV+F     CWY+
Sbjct  1052  LRVVREPCPGTTVKIDQNCDKRGSSLRSTTESGKAIPEWCCRTCELPPVTFRSGTDCWYA  1111

Query  359   MEVRPKHTNEAHLVKSWVVA  378
             ME+RP H  +  LV+S V+A
Sbjct  1112  MEIRPVH-QQGGLVRSMVLA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Kyasanur Forest disease virus]
Sequence ID: D7RF80.1 Length: 3416
Range 1: 753 to 1130

Score:304 bits(779), Expect:4e-93, 
Method:Compositional matrix adjust., 
Identities:148/380(39%), Positives:218/380(57%), Gaps:4/380(1%)

Query  1     ENESISANDVIRALREPLICATIONEVGCSLSWKQREMKCGDGVFVFKDSDDWFSKYQYI  60
              N ++S   +I       +   +  ++GC++   + E++CG+G+ V+++  DW+  Y + 
Sbjct  753   RNPTLSVGFLITGGLVLTMTLGVGADMGCAIDANRMELRCGEGLVVWREVTDWYDGYAFH  812

Query  61    PEDPKTMATLIHQAHQDGLCGLSSVSDLEHRMWYSRVDEINAILDENEVDLTVVVQESDA  120
             PE P  +A  + +A+++G+CG+   + LE  MW      +N  L E++ +LTVVV + D 
Sbjct  813   PESPSVLAASLKEAYEEGICGIVPQNRLEMAMWRRVEAVLNLALAESDANLTVVVDKRDP  872

Query  121   VYLRGSHA--FPRPKSELKYGWKTWGKNIIFNPSRKNGTFIIDGKSKAECPFNKRVWNSI  178
                RG       R   E+K  WK W ++ +++       F++  +   ECP +KR     
Sbjct  873   SDYRGGKVGTLRRSGKEMKTSWKGWSQSFVWSVPEAPRRFMVGVEGAGECPLDKRRTGVF  932

Query  179   RVEEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESEEINGTWMI  238
              V EFG G+ +T+VF+      +  CDTG +GAAVK   + H D   WM S        I
Sbjct  933   TVAEFGMGM-RTKVFLDLRETASSDCDTGVMGAAVKSGHAVHTDQSLWMRSHRNATGVFI  991

Query  239   TTLEALNYRECEWPSSHTLDGAKVVESDMFMPRSLAGPISKHNHIPGYKVQTSGPWHNVP  298
             + L   + R C WP+SHTLD A VV+S +F+P  LAGP S +NHIPGY  Q  GPW   P
Sbjct  992   SELIVTDLRNCTWPASHTLDNAGVVDSKLFLPAGLAGPRSHYNHIPGYAEQVKGPWSQTP  1051

Query  299   LEIKREECPGTTVVVDEKCDDRAKSVRSTTDSGKIIPEWCCRSCTMPPVSFWGPDGCWYS  358
             L + RE CPGT V +D+ CD R  S+RSTT+SGK IPEWCCR+C +PPV+F     CWY+
Sbjct  1052  LRVVREPCPGTAVKIDQSCDKRGASLRSTTESGKAIPEWCCRTCELPPVTFRSGTDCWYA  1111

Query  359   MEVRPKHTNEAHLVKSWVVA  378
             ME+RP H  +  LV+S V+A
Sbjct  1112  MEIRPVH-QQGGLVRSMVLA  1130


>RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Cell fusing agent virus]
Sequence ID: P33515.1 Length: 3341
Range 1: 868 to 1063

Score:105 bits(261), Expect:2e-24, 
Method:Compositional matrix adjust., 
Identities:69/201(34%), Positives:97/201(48%), Gaps:7/201(3%)

Query  171   NKRVWNSIRVEEFGTGVYQTRVFMRPEFDYTKLCDTGTLGAAVKGSVSAHGDPMFWMESE  230
              K V    +   F  G+Y + V +    + +  C T   G AVK   +   D MFWMES 
Sbjct  868   GKAVSFQFKFTGFRRGLYGSNVQVEVSKNSSTECPTYLAGVAVKNGRTVITDGMFWMESI  927

Query  231   EINGTWMITTLEALNYRECEWPSSHTLDG-AKVVESDMFMPRSLAGPISKHNHIPGYKVQ  289
              ++G   IT+LE      C WP  +T D  +   +  +F+P +  GPIS+ NHI GYK Q
Sbjct  928   VLDGVAQITSLEMRQSHRCVWPREYTPDTLSDPSDQALFIPPAWGGPISRVNHIIGYKTQ  987

Query  290   TSGPWHNVPLEIKREECPGTTVVVDEKCDDRAKS-VRSTTDSGKIIPEWCCRSCTMPPVS  348
             T  PW+   + +     PGT V VD +C  R  + V    D+      WCC+SCT   V 
Sbjct  988   TDFPWNVSDITLIEGPAPGTKVKVDSRCHGRMHAQVIGPNDT----ESWCCQSCTR-IVH  1042

Query  349   FWGPDGCWYSMEVRPKHTNEA  369
             F   D  +Y ME++    +EA
Sbjct  1043  FRVGDLLYYPMEIQLGTMSEA  1063