TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ASSY_ECOLI (447 letters) Database: 3g1 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE006120|AE006120 Pasteurella multocida subsp. multocida st... 718 0.0 embl|AE004330|AE004330 Vibrio cholerae O1 biovar eltor str. N169... 129 2e-30 embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 ... 121 4e-28 embl|AE004520|AE004520 Pseudomonas aeruginosa PAO1, section 81 o... 28 5.5 embl|AE004694|AE004694 Pseudomonas aeruginosa PAO1, section 255 ... 28 7.2 >embl|AE006120|AE006120 Pasteurella multocida subsp. multocida str. Pm70 section 87 of 204 of the complete genome. Length = 11573 Score = 718 bits (1853), Expect = 0.0 Identities = 356/438 (81%), Positives = 392/438 (89%), Gaps = 1/438 (0%) Frame = -3 Query: 3 TILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAME 62 TIL+ LP GQ++GIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDY+AIPR+AME Sbjct: 3591 TILQQLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYNAIPRKAME 3412 Query: 63 YGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDG 122 YGAENARLIDCR QL EGIAAIQ GAFH +TGG+TYFNTTPLGRAVTGTMLV+AM+ED Sbjct: 3411 YGAENARLIDCRAQLAHEGIAAIQSGAFHISTGGVTYFNTTPLGRAVTGTMLVSAMREDD 3232 Query: 123 VNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFD 182 VNIWGDGST+KGNDIERFYRYGLLTN L+IYKPWLD FI+ELGGRHEMSEF+IA GF+ Sbjct: 3231 VNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDNQFIEELGGRHEMSEFLIANGFE 3052 Query: 183 YKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFE 242 YKMSVEKAYSTDSNMLGATHEAKDLE+LN+ ++IV PIMGV FW + V++ AEEVTVRFE Sbjct: 3051 YKMSVEKAYSTDSNMLGATHEAKDLEFLNTGIRIVKPIMGVAFWRDDVEVKAEEVTVRFE 2872 Query: 243 QGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHI 302 +G PVALNGKTFSD VE+ LEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHI Sbjct: 2871 EGIPVALNGKTFSDHVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHI 2692 Query: 303 AYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVTL 362 AYERL++GIHNEDTIEQY +G +LGRLLYQGRWFD QALMLR++ QRWVA ITGEVT Sbjct: 2691 AYERLVSGIHNEDTIEQYRINGLRLGRLLYQGRWFDPQALMLRETAQRWVARAITGEVTF 2512 Query: 363 ELRRGNDYSILNTVSENLTYKPERLTMEKGDSV-FSPDDRIGQLTMRNLDITDTREKLFG 421 ELRRGNDYSILNT S NLTY PERL+MEK ++ F P DRIGQLTMRNLDI DTR+KL Sbjct: 2511 ELRRGNDYSILNTESPNLTYMPERLSMEKVENAPFDPVDRIGQLTMRNLDIVDTRDKLGI 2332 Query: 422 YAKTGLLSSSAASGVPQV 439 Y +TGLLS S S +PQ+ Sbjct: 2331 YTQTGLLSISKDSFLPQL 2278 >embl|AE004330|AE004330 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 238 of 251 of the complete chromosome. Length = 11523 Score = 129 bits (324), Expect = 2e-30 Identities = 101/359 (28%), Positives = 168/359 (46%), Gaps = 3/359 (0%) Frame = -2 Query: 12 QRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARL 70 +++ +A+SGGLDTS + W+++ A+ A++GQ DEE + +A+ GA + Sbjct: 9503 KKVVVAYSGGLDTSVIIPWLKENYDCEVVAFVADVGQGDEE-LKGVEAKALSSGASECYI 9327 Query: 71 IDCRKQLVAEGI-AAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDG 129 +D +++ V E I ++ GA++ Y T + R V V ++ G + G Sbjct: 9326 VDLKEEFVKEYIYPTLKTGAYYEGK----YLLGTSMARPVIAKAQVEIARKVGADALAHG 9159 Query: 130 STYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEK 189 T KGND RF +L + PW + D ++E I C S+ K Sbjct: 9158 CTGKGNDQVRFEGAFAALAPDLHVIAPWREWDLRSREACLDYLAERNIPCA----ASLTK 8991 Query: 190 AYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWD-ESVKIPAEEVTVRFEQGHPVA 248 YS D+N A H + + L S+ N V D E AE VT++ G VA Sbjct: 8990 IYSRDAN---AWHVSTEGGVLESTWNAPNEDCWVWTVDPEQAPNEAEYVTLQVAHGEVVA 8820 Query: 249 LNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLL 308 ++G+ + +L N+ G +HG+G D +ENR++ KSRG YE PG ++ A + Sbjct: 8819 VDGEAMTP-YNALLYLNQKGAKHGVGRIDIVENRLVGMKSRGCYETPGGTIIMEALRAVE 8643 Query: 309 TGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVTLELRRG 367 + ++ + E G + L+Y GRWF + + +A + GEV ++L +G Sbjct: 8642 QLVLDKTSFEFREELGIKASHLVYDGRWFTPLRQAVFAAADE-LAKDVNGEVVIKLYKG 8469 >embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 of 529 of the complete genome. Length = 10822 Score = 121 bits (304), Expect = 4e-28 Identities = 105/409 (25%), Positives = 189/409 (46%), Gaps = 10/409 (2%) Frame = -2 Query: 12 QRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARL 70 +++ +A+SGGLDTS L W++ +TA+LGQ +E + RAM G + + Sbjct: 1902 KKVVLAYSGGLDTSVILKWLQDTYNCEVVTFTADLGQGEEVEPARAKARAM--GVKEIYI 1729 Query: 71 IDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGS 130 D R++ V + + + NT Y T + R + L+ E G + G+ Sbjct: 1728 DDLREEFVRDFVYPMFRA---NTVYEGEYLLGTSIARPLIAKRLIEIANETGADAISHGA 1558 Query: 131 TYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKA 190 T KGND RF +++ PW + D + R ++ ++ G + +K Sbjct: 1557 TGKGNDQVRFELGAYALKPGVKVIAPWREWDLLS----REKLMDYAEKHGIPIERHGKKK 1390 Query: 191 --YSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVA 248 YS D+N+L ++E LE ++ + + E+ + + + +G VA Sbjct: 1389 SPYSMDANLLHISYEGGVLE--DTWTEHEEDMWKWTASPENAPDTPTYIELTYRKGDIVA 1216 Query: 249 LNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLL 308 ++GK + E++ E NR+GG +G+G D +ENR + KSRG YE PG ++ A+ + Sbjct: 1215 IDGKDMTP-AEVLTELNRVGGINGIGRLDIVENRYVGMKSRGCYETPGGTIMLKAHRAI- 1042 Query: 309 TGIHNEDTIEQYHAHGR-----QLGRLLYQGRWFDSQALMLRDSLQRWVASQ--ITGEVT 361 T+++ AH + + L+Y G W+ + LML+ + ASQ + G V Sbjct: 1041 ----ESITLDREVAHLKDELMPKYASLIYTGYWWSPERLMLQQMID---ASQVNVNGVVR 883 Query: 362 LELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDDRIGQLTMRNL 410 L+L +GN ++ S++ + T E+ ++ D G + + L Sbjct: 882 LKLYKGN-VVVVGRKSDDSLFDANIATFEEDGGAYNQADAAGFIKLNAL 739 >embl|AE004520|AE004520 Pseudomonas aeruginosa PAO1, section 81 of 529 of the complete genome. Length = 12217 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 272 GLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYER 306 GLG+ +ENR++ + G+ EA G LLH+ +R Sbjct: 7914 GLGLVT-LENRLLALRRLGLGEALGQHLLHLGIDR 7813 >embl|AE004694|AE004694 Pseudomonas aeruginosa PAO1, section 255 of 529 of the complete genome. Length = 11017 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +3 Query: 233 PAEEVTVRFEQGHPVALNGKTFSDDVE-MMLEANRIGGRHGLGMSDQIENRIIEAKSRGI 291 PAE TV E+ V + + D+VE ++ +A R+G H G+ +++A+ G Sbjct: 1611 PAEHATVAEEEEQQVEHDAEA-DDEVEGVLADAERLGRHHLAGLHRHRGELLLQAREIGQ 1787 Query: 292 YEA 294 EA Sbjct: 1788 VEA 1796 Database: 3g1 Posted date: Oct 2, 2006 2:39 AM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 0.317 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,155,048 Number of Sequences: 1077 Number of extensions: 87400 Number of successful extensions: 404 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 30 Number of HSP's that attempted gapping in prelim test: 317 Number of HSP's gapped (non-prelim): 135 length of query: 447 length of database: 4,206,551 effective HSP length: 97 effective length of query: 350 effective length of database: 4,102,082 effective search space: 1435728700 effective search space used: 1435728700 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)