Header
Program needle
Rundate Mon Mar 26 2007 19:30:43
Align format srspair
Report file temp_job3.needlep
Results
 
#=======================================
#
# Aligned_sequences: 2
# 1: SYMM_HUMAN
# 2: SYM_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 394
# Identity:     106/394 (26.9%)
# Similarity:   179/394 (45.4%)
# Gaps:          39/394 ( 9.9%)
# Score: 408.5
# 
#
#=======================================

SYMM_HUMAN         1 AYFTTPIFYVNAAPHIGHLYSALL-ADALCRHRRLRGPSTAATRFSTGTD     49
                     ...||.:.|.|...|:||..|..: ||.:.::.:|||......   .|||
SYM_METJA          1 YLITTALAYTNGPLHLGHARSTYIPADIIYKYLKLRGEDVIHV---GGTD     47

SYMM_HUMAN        50 EHGLKIQQAAATAGLAPTELCDRVSEQFQQLFQEAGISCTDFIRTTEARH     99
                     .||:.|...|...|.:|.|:.::...:.::.....|:....|.:|....|
SYM_METJA         48 NHGVPITLTAEKEGKSPEEIVEKYHNEIKEDLDLLGVEFDAFGKTHSQIH     97

SYMM_HUMAN       100 RVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEAKVT----------    139
                     ....|.|:..||..|.:|:...|.:||.:.:.|||:..|.          
SYM_METJA         98 IETAQEFYLKLKENGYIYEKEIEQFYCPNCKKFLPDRYVEGICPYCGGEA    147

SYMM_HUMAN       140 -----------QQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPL    178
                                .:|....|.:.|..:....:..||  ::.|:||..:|.|
SYM_METJA        148 RGDHCEVCGRHLEPFELKDPYCVICKGKPEIRKTK--HHFFKLSALKKEL    195

SYMM_HUMAN       179 QRWLRGNPQAITPEPFHHVVLQWLDEELPDLSVSRRSSHLHWGIPVPGDD    228
                     :.:::...:  .||...::.|.|: :||.|..:||   .:.||:|:|| .
SYM_METJA        196 EEYIKNAKE--MPEHVKNMALNWI-KELHDWDISR---DISWGVPIPG-T    238

SYMM_HUMAN       229 SQTIYVWLDALVNYLTVIGYPNAEFKSWW----PATSHIIGKDILKFHAI    274
                     :|.:||||:|.:.|::........:|.:|    ....|.|||||...||:
SYM_METJA        239 NQVMYVWLEAPIGYISFTKMLGEIWKKYWLEKDTKIYHFIGKDITVHHAV    288

SYMM_HUMAN       275 YWPAFLLGAG-MSPPQRICVHSHWTVCGQKMSKSLGNVVDPRTCLNRYTV    323
                     :||..|:..| .:.|..:....:.|:.|:|||.|...||..:..:..:..
SYM_METJA        289 FWPGMLIAHGSFNLPTAVVSGGYLTLEGRKMSTSKRWVVWVKDFVKNFDA    338

SYMM_HUMAN       324 DGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCT    367
                     |..||:|:.......|||:..:.....:|:||.:.:|...:|..
SYM_METJA        339 DYLRYYLIMSAPLFKDCDFSFDDFKNKINNELINIIGNFTHRVL    382


Additional Information