******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= temp.fasta ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ THIS_BACSU 1.0000 66 THIG_MAGSM 1.0000 326 THIG_MAGSA 1.0000 324 YCF40_ODOSI 1.0000 73 YCF40_PORYE 1.0000 71 YCF40_PORPU 1.0000 71 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme temp.fasta -mod zoops -nmotifs 3 -prior dirichlet -nostatus -protein -text model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 6 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 931 N= 6 sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.086 C 0.013 D 0.057 E 0.067 F 0.032 G 0.082 H 0.015 I 0.073 K 0.059 L 0.100 M 0.030 N 0.056 P 0.041 Q 0.023 R 0.035 S 0.054 T 0.059 V 0.082 W 0.006 Y 0.031 Background letter frequencies (from dataset with add-one prior applied): A 0.085 C 0.014 D 0.057 E 0.066 F 0.033 G 0.081 H 0.016 I 0.073 K 0.059 L 0.099 M 0.030 N 0.056 P 0.041 Q 0.023 R 0.036 S 0.054 T 0.059 V 0.081 W 0.007 Y 0.032 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 50 sites = 6 llr = 571 E-value = 7.4e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :::2::2::::2::::7:::::2:::::::22:2::::::::::2::::: pos.-specific C ::::::::::::::::::::::::2::::::::::2:::::::::::::: probability D :::3:::::5:2:::::::::2::::::::::::::72a::::::::::: matrix E ::3::::2:::2:5::::a:::3:::32::22:2::2::::a:::::::: F :::3::::2:7:::::::::::2::::::3:::::::::::::::5:::: G :::2::22:3:::::::::::::::2:2::2::::::2:::::::::aaa H ::2:::::::::::::::::::::::::::5:::::::::::::3::::: I :2::::::::::::2222:2::252:::::::2:3:::::5:73:53::: K :::::::::::::23::::::3::::52:::2:::::::7:::::::::: L :7::aa::7:2:::22:2:2:2:33:::3:::::5:::::3::::::::: M ::::::2::::::::::::::::::::::::::2:::::::::::::::: N 2:::::5::::52:::::::a2:::2::2::::::522:::::::::::: P ::::::::::::2::::::::::::5:::::::::::::::::::::::: Q ::5::::::2:::::::::::::::::::::2:::2:3:2:::::::::: R :::::::::::::23::::5::::::222::::::::2:::::::::::: S 3::::::2::::72:::::::2:::2:22::3:::2:::::::::::::: T 5:::::::::::::::::::::2::::22:::3:::::::::::5::::: V :2::::::::2::::727:::::23:::::::522::::22:37::7::: W :::::::::::::::::::::::::::::2:::::::::::::::::::: Y :::::::52::::::::::2:::::::::5:::3:::::::::::::::: bits 7.1 6.4 5.7 5.0 Relative 4.3 * * * * Entropy 3.5 * ** * * * * * * * *** (137.3 bits) 2.8 * * ** **** * *** ** ** ** ** ********* 2.1 ********************* ***** ********************* 1.4 ************************************************** 0.7 ************************************************** 0.0 -------------------------------------------------- Multilevel TLQDLLNYLDFNSEKVAVERNKEILPKxLYHSVYLNDQDKIEIVTFVGGG consensus S EF G R LV E F T I L VIHII sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- YCF40_PORYE 22 1.92e-48 GEPFNCSKPI SLQFLLNYLDFNSERVAVELNDILLPETLFHSTYLNDQDKLEVITIVGGG YCF40_PORPU 22 1.60e-47 GEPFNCSEPL SLQFLLNYLDFNSERIAIEINSTLLPERLFHSTYINDQDKVEIITIVGGG THIS_BACSU 17 3.82e-42 KDVKWKKDTG TIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG YCF40_ODOSI 24 1.00e-41 GQEYYTTNTI NLHDLLNYFDFNSSLLVLEYNNFICNKKNWEKIMISNNDKIEIVTIVGGG THIG_MAGSM 17 8.45e-41 GEPHNAEAGT TLEGLLMGLGFAPEKVAVERNKAVVSRGTYGAVVLQEDDQIEVVHFIGGG QHPPADSWSV THIG_MAGSA 17 9.09e-41 GEERNFSASM TVEALLGELGVDSRKVAVERNLEIVPKSSYAQVAVNDGDKLEIVAFIGGG SDQADSFTVA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YCF40_PORYE 1.9e-48 21_[1] YCF40_PORPU 1.6e-47 21_[1] THIS_BACSU 3.8e-42 16_[1] YCF40_ODOSI 1e-41 23_[1] THIG_MAGSM 8.4e-41 16_[1]_260 THIG_MAGSA 9.1e-41 16_[1]_258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=50 seqs=6 YCF40_PORYE ( 22) SLQFLLNYLDFNSERVAVELNDILLPETLFHSTYLNDQDKLEVITIVGGG 1 YCF40_PORPU ( 22) SLQFLLNYLDFNSERIAIEINSTLLPERLFHSTYINDQDKVEIITIVGGG 1 THIS_BACSU ( 17) TIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG 1 YCF40_ODOSI ( 24) NLHDLLNYFDFNSSLLVLEYNNFICNKKNWEKIMISNNDKIEIVTIVGGG 1 THIG_MAGSM ( 17) TLEGLLMGLGFAPEKVAVERNKAVVSRGTYGAVVLQEDDQIEVVHFIGGG 1 THIG_MAGSA ( 17) TVEALLGELGVDSRKVAVERNLEIVPKSSYAQVAVNDGDKLEIVAFIGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 50 n= 637 bayes= 6.71653 E= 7.4e-041 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 158 -923 -923 -923 263 308 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 120 -923 275 -923 -923 -923 -923 -923 -923 -923 104 -923 -923 -923 -923 -923 233 -923 -923 340 -923 -923 -923 -923 -923 -923 443 -923 -923 -923 -923 -923 -923 97 -923 255 -923 335 104 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 334 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 334 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 97 -923 -923 -923 -923 104 -923 -923 -923 -923 245 316 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 133 -923 104 -923 -923 -923 -923 -923 -923 -923 -923 -923 163 -923 -923 -923 398 -923 -923 -923 -923 235 -923 -923 -923 -923 275 -923 -923 -923 -923 -923 -923 -923 -923 -923 240 -923 -923 314 -923 -923 204 -923 -923 -923 -923 -923 -923 -923 285 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 435 -923 -923 -923 -923 75 -923 -923 -923 -923 -923 -923 -923 104 -923 -923 97 -923 155 133 -923 -923 -923 -923 -923 -923 -923 316 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 158 202 -923 -923 363 -923 -923 -923 -923 -923 -923 -923 291 -923 -923 -923 -923 150 -923 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-923 -923 -923 308 -923 -923 -923 -923 -923 -923 -923 394 -923 -923 278 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 220 -923 -923 -923 -923 -923 -923 -923 -923 -923 304 -923 -923 -923 -923 -923 -923 -923 362 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 362 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 362 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 50 nsites= 6 E= 7.4e-041 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 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-------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TS]L[QE][DF]LLNYL[DG]FNSE[KR]VAVERNKE[IL][LV]P[KE]xL[YF]HS[VT]Y[LI]NDQDK[IL]E[IV][VI][TH][FI][VI]GGG -------------------------------------------------------------------------------- Time 0.37 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 50 sites = 2 llr = 277 E-value = 8.8e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::::::::5::::::::::::::::::a::::a::5::::::a::a::: pos.-specific C ::::::::::::::::::::::::::::::a::::::::::::::::::: probability D ::::::5:::::::a::5::::::::::::::::5a:::::::::::::: matrix E ::::::::::::::::::::::::::::::::::5::::::::::a:::: F :::::::::::::::::::::::5:::::::5:::::::::::::::::: G :::::::::::::::::::::::::::::a:::::::::::::::::aa: H :::::::::::::::::::::::::::::::::::::::::::::::::: I ::::::::::::::::5::::::::::::::::::::::::::::::::: K :::::::::5:::::::::aa::::::::::::::::::::::::::::: L ::::5:::::::a:::::::::::a:::::::::::::::a:a::::::: M :::::::::::a:::::::::::::::::::::::::::::::::::::: N :::a::5:5:::::::::::::::::a::::::::::::::::::::::: P :::::::a::a:::::::a::::::a:::::::::::::::::::::::: Q :::::::::::::::::::::::::::::::::::::::::::::::::: R aa::::::::::::::::::::::::::::::::::::a::a::a::::: S :::::a::5::::::::5::::::::::::::::::5::::::::::::: T :::::::::::::5::::::::a::::a::::a::::::a:::::::::: V ::a:5::::::::5::5::::::::::::::::::::a:::::::::::: W :::::::::::::::::::::::::::::::::::::::::::::::::a Y :::::::::::::::a:::::a:5:::::::5:::::::::::::::::: bits 7.1 * 6.4 * * 5.7 * * 5.0 ** * ** * * * * * * * * * Relative 4.3 ** * * * ** ** ****** *** *** * ** * ** * Entropy 3.5 **** * ** *** ** **************** * ************* (199.9 bits) 2.8 ************************************************** 2.1 ************************************************** 1.4 ************************************************** 0.7 ************************************************** 0.0 -------------------------------------------------- Multilevel RRVNLSDPNAPMLTDYIDPKKYTFLPNTAGCFTADDAVRTLRLAREAGGW consensus V N SK V VS Y Y E S sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- THIG_MAGSA 114 1.14e-61 SGAEIVTVAV RRVNLSDPSKPMLVDYVSPKKYTFLPNTAGCYTADDSVRTLRLAREAGGW NLVKLEVLGD THIG_MAGSM 115 4.86e-61 SGAEIVTVAV RRVNVSNPNAPMLTDYIDPKKYTYLPNTAGCFTAEDAVRTLRLAREAGGW DLVKLEVLSD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- THIG_MAGSA 1.1e-61 113_[2]_161 THIG_MAGSM 4.9e-61 114_[2]_162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=50 seqs=2 THIG_MAGSA ( 114) RRVNLSDPSKPMLVDYVSPKKYTFLPNTAGCYTADDSVRTLRLAREAGGW 1 THIG_MAGSM ( 115) RRVNVSNPNAPMLTDYIDPKKYTYLPNTAGCFTAEDAVRTLRLAREAGGW 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 50 n= 637 bayes= 8.31061 E= 8.8e-012 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 480 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 480 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 362 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 416 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 -765 233 -765 -765 -765 -765 -765 -765 -765 262 -765 -765 -765 -765 -765 -765 -765 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-------------------------------------------------------------------------------- RRVN[LV]S[DN]P[NS][AK]PML[TV]DY[IV][DS]PKKYT[FY]LPNTAGC[FY]TA[DE]D[AS]VRTLRLAREAGGW -------------------------------------------------------------------------------- Time 0.60 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 21 sites = 4 llr = 191 E-value = 8.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::5:5:5:::: pos.-specific C ::::5:::::::::::5:::: probability D :::::5::::::::::::5:: matrix E :5::::::::::5:::::3:: F ::::::::::::::5:::::: G :::5::5::::5:::3::::: H ::3::::::::::::3::::: I :5:::5:5:5:::5::::::8 K :::3:::::::::::::53:: L ::5:::::5:::::::::::3 M a::::::::5::::::::::: N ::3:5:::::a::::5::::: P :::::::::::::5:::::a: Q ::::::::5:::::::::::: R ::::::::::::::::::::: S :::3::5::::::::::5::: T :::::::::::5::::::::: V :::::::5::::::::::::: W ::::::::::::::::::::: Y ::::::::::::::::::::: bits 7.1 6.4 5.7 5.0 * * Relative 4.3 * * * * Entropy 3.5 * * *** ** * * (68.8 bits) 2.8 *** ***************** 2.1 ********************* 1.4 ********************* 0.7 ********************* 0.0 --------------------- Multilevel MELGCDGILINGAIANAKDPI consensus IHKNISVQM TEPFGCSE L sequence NS H K -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- YCF40_PORYE 1 9.71e-24 . MIHSNISIQINGEPFNCSKPI SLQFLLNYLD THIG_MAGSA 266 4.43e-22 VGTASDAALA MELGCDGVLMNTAIAHAKDPI RMARAMKLAI YCF40_PORPU 1 6.05e-22 . MINKNISIQINGEPFNCSEPL SLQFLLNYLD THIG_MAGSM 267 2.06e-21 VGTASDAAIA MELGCDGVLMNTAIAGAKDPI LMAHAMKHAV -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YCF40_PORYE 9.7e-24 [3]_50 THIG_MAGSA 4.4e-22 265_[3]_38 YCF40_PORPU 6.1e-22 [3]_50 THIG_MAGSM 2.1e-21 266_[3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=21 seqs=4 YCF40_PORYE ( 1) MIHSNISIQINGEPFNCSKPI 1 THIG_MAGSA ( 266) MELGCDGVLMNTAIAHAKDPI 1 YCF40_PORPU ( 1) MINKNISIQINGEPFNCSEPL 1 THIG_MAGSM ( 267) MELGCDGVLMNTAIAGAKDPI 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 811 bayes= 7.65642 E= 8.9e-009 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 503 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 291 -865 -865 -865 278 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 398 -865 -865 234 -865 216 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 262 -865 -865 208 -865 -865 -865 -865 -865 -865 222 -865 -865 -865 -865 -865 519 -865 -865 -865 -865 -865 -865 -865 -865 -865 316 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 314 -865 -865 -865 -865 278 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 262 -865 -865 -865 -865 -865 -865 -865 -865 -865 322 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 278 -865 -865 -865 -865 -865 -865 -865 -865 -865 262 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 234 -865 -865 -865 443 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 278 -865 -865 403 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 416 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 262 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 308 -865 -865 -865 255 -865 -865 291 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 278 -865 -865 -865 -865 360 -865 -865 -865 -865 -865 -865 -865 255 -865 -865 -865 394 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 162 398 -865 -865 -865 -865 316 -865 -865 -865 -865 -865 -865 -865 -865 255 519 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 308 -865 -865 -865 -865 -865 -865 322 -865 -865 -865 -865 -865 -865 314 191 -865 -865 -865 -865 208 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 460 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 337 -865 134 -865 -865 -865 -865 -865 -865 -865 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 4 E= 8.9e-009 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.500000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.250000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.250000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- M[EI][LHN][GKS][CN][DI][GS][IV][LQ][IM]N[GT][AE][IP][AF][NGH][AC][KS][DEK]P[IL] -------------------------------------------------------------------------------- Time 0.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- THIS_BACSU 2.15e-38 16_[1(3.82e-42)] THIG_MAGSM 6.86e-110 16_[1(8.45e-41)]_48_[2(4.86e-61)]_102_[3(2.06e-21)]_39 THIG_MAGSA 3.72e-111 16_[1(9.09e-41)]_47_[2(1.14e-61)]_102_[3(4.43e-22)]_38 YCF40_ODOSI 4.66e-37 23_[1(1.00e-41)] YCF40_PORYE 3.27e-65 [3(9.71e-24)]_[1(1.92e-48)] YCF40_PORPU 3.97e-62 [3(6.05e-22)]_[1(1.60e-47)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: kodomo.fbb.msu.ru ********************************************************************************