BLASTN 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AL009126 AL009126.3 Bacillus subtilis subsp. subtilis str. 168 complete genome. (201 letters) Database: gt_genome.fasta 1 sequences; 3,550,319 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, comp... 34 0.034 >CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, complete genome. Length = 3550319 Score = 34.2 bits (17), Expect = 0.034 Identities = 17/17 (100%) Strand = Plus / Plus Query: 101 tggaaagaaataaagaa 117 ||||||||||||||||| Sbjct: 1888250 tggaaagaaataaagaa 1888266 Score = 30.2 bits (15), Expect = 0.53 Identities = 15/15 (100%) Strand = Plus / Minus Query: 102 ggaaagaaataaaga 116 ||||||||||||||| Sbjct: 2067915 ggaaagaaataaaga 2067901 Score = 28.2 bits (14), Expect = 2.1 Identities = 14/14 (100%) Strand = Plus / Minus Query: 73 tatcagcttgaaaa 86 |||||||||||||| Sbjct: 439032 tatcagcttgaaaa 439019 Score = 28.2 bits (14), Expect = 2.1 Identities = 14/14 (100%) Strand = Plus / Plus Query: 154 tgtgatcgtgatgt 167 |||||||||||||| Sbjct: 530710 tgtgatcgtgatgt 530723 Score = 28.2 bits (14), Expect = 2.1 Identities = 14/14 (100%) Strand = Plus / Minus Query: 83 aaaataaaatcgtt 96 |||||||||||||| Sbjct: 1713860 aaaataaaatcgtt 1713847 Score = 28.2 bits (14), Expect = 2.1 Identities = 14/14 (100%) Strand = Plus / Minus Query: 163 gatgtcattgaaat 176 |||||||||||||| Sbjct: 1896155 gatgtcattgaaat 1896142 Score = 28.2 bits (14), Expect = 2.1 Identities = 14/14 (100%) Strand = Plus / Minus Query: 121 atcgggaaagaacg 134 |||||||||||||| Sbjct: 3274950 atcgggaaagaacg 3274937 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 176 ttgtccattttgt 188 ||||||||||||| Sbjct: 122066 ttgtccattttgt 122054 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 176 ttgtccattttgt 188 ||||||||||||| Sbjct: 130278 ttgtccattttgt 130266 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 110 ataaagaaataat 122 ||||||||||||| Sbjct: 200005 ataaagaaataat 199993 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 162 tgatgtcattgaa 174 ||||||||||||| Sbjct: 288765 tgatgtcattgaa 288777 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 26 tgaagtggaaaaa 38 ||||||||||||| Sbjct: 394492 tgaagtggaaaaa 394504 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 170 ttgaaattgtcca 182 ||||||||||||| Sbjct: 461301 ttgaaattgtcca 461313 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 108 aaataaagaaata 120 ||||||||||||| Sbjct: 481655 aaataaagaaata 481667 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 169 attgaaattgtcc 181 ||||||||||||| Sbjct: 570115 attgaaattgtcc 570103 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 82 gaaaataaaatcg 94 ||||||||||||| Sbjct: 833810 gaaaataaaatcg 833822 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 165 tgtcattgaaatt 177 ||||||||||||| Sbjct: 933601 tgtcattgaaatt 933589 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 120 aatcgggaaagaa 132 ||||||||||||| Sbjct: 991317 aatcgggaaagaa 991305 Score = 26.3 bits (13), Expect = 8.2 Identities = 16/17 (94%) Strand = Plus / Minus Query: 169 attgaaattgtccattt 185 ||||| ||||||||||| Sbjct: 1308786 attgagattgtccattt 1308770 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 120 aatcgggaaagaa 132 ||||||||||||| Sbjct: 1490642 aatcgggaaagaa 1490630 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 175 attgtccattttg 187 ||||||||||||| Sbjct: 1934333 attgtccattttg 1934321 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 80 ttgaaaataaaat 92 ||||||||||||| Sbjct: 1965404 ttgaaaataaaat 1965416 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 86 ataaaatcgttat 98 ||||||||||||| Sbjct: 2040764 ataaaatcgttat 2040776 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 79 cttgaaaataaaa 91 ||||||||||||| Sbjct: 2181036 cttgaaaataaaa 2181024 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 173 aaattgtccattt 185 ||||||||||||| Sbjct: 2212104 aaattgtccattt 2212116 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 120 aatcgggaaagaa 132 ||||||||||||| Sbjct: 2230691 aatcgggaaagaa 2230679 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 162 tgatgtcattgaa 174 ||||||||||||| Sbjct: 2233025 tgatgtcattgaa 2233013 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 162 tgatgtcattgaa 174 ||||||||||||| Sbjct: 2295753 tgatgtcattgaa 2295741 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 153 ttgtgatcgtgat 165 ||||||||||||| Sbjct: 2393983 ttgtgatcgtgat 2393971 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 80 ttgaaaataaaat 92 ||||||||||||| Sbjct: 2444580 ttgaaaataaaat 2444568 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 21 agacgtgaagtgg 33 ||||||||||||| Sbjct: 2618553 agacgtgaagtgg 2618541 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 71 cgtatcagcttga 83 ||||||||||||| Sbjct: 2621927 cgtatcagcttga 2621939 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 176 ttgtccattttgt 188 ||||||||||||| Sbjct: 2653023 ttgtccattttgt 2653035 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 78 gcttgaaaataaa 90 ||||||||||||| Sbjct: 2904245 gcttgaaaataaa 2904233 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 30 gtggaaaaaagac 42 ||||||||||||| Sbjct: 2912398 gtggaaaaaagac 2912410 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 170 ttgaaattgtcca 182 ||||||||||||| Sbjct: 2959953 ttgaaattgtcca 2959965 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Minus Query: 176 ttgtccattttgt 188 ||||||||||||| Sbjct: 3123818 ttgtccattttgt 3123806 Score = 26.3 bits (13), Expect = 8.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 115 gaaataatcggga 127 ||||||||||||| Sbjct: 3516741 gaaataatcggga 3516753 Score = 26.3 bits (13), Expect = 8.2 Identities = 16/17 (94%) Strand = Plus / Minus Query: 103 gaaagaaataaagaaat 119 |||||||||||| |||| Sbjct: 3520367 gaaagaaataaaaaaat 3520351 Database: gt_genome.fasta Posted date: Oct 31, 2012 3:02 AM Number of letters in database: 3,550,319 Number of sequences in database: 1 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 1 Number of Hits to DB: 8976 Number of extensions: 39 Number of successful extensions: 39 Number of sequences better than 10.0: 1 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 201 Length of database: 3,550,319 Length adjustment: 15 Effective length of query: 186 Effective length of database: 3,550,304 Effective search space: 660356544 Effective search space used: 660356544 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 50 (99.1 bits) S1: 13 (26.3 bits) S2: 13 (26.3 bits)