RID: YTSKPP0S016 Job Title:MIDDV_nsp4_RdRp P03318:386-995 RNA-directed... Program: BLASTP Query: MIDDV_nsp4_RdRp P03318:386-995 RNA-directed RNA polymerase nsP4 ID: lcl|Query_2283854(amino acid) Length: 610 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 1278 1278 100% 0.0 100.00 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 996 996 100% 0.0 76.62 2432 P08411.2 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 993 993 100% 0.0 77.00 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 987 987 100% 0.0 76.27 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 986 986 100% 0.0 76.10 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 983 983 100% 0.0 76.67 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 982 982 100% 0.0 75.65 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 982 982 100% 0.0 76.67 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 981 981 100% 0.0 76.67 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 978 978 100% 0.0 75.33 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 977 977 100% 0.0 76.35 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 968 968 100% 0.0 75.86 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 932 932 100% 0.0 73.37 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 932 932 100% 0.0 73.53 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 911 911 100% 0.0 72.06 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 910 910 100% 0.0 72.30 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 900 900 100% 0.0 70.16 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 897 897 100% 0.0 72.46 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 891 891 100% 0.0 71.48 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 889 889 100% 0.0 71.64 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 873 873 100% 0.0 70.84 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 871 871 100% 0.0 70.68 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 868 868 100% 0.0 70.35 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 868 868 100% 0.0 69.85 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 866 866 100% 0.0 69.85 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 666 666 99% 0.0 54.49 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 659 659 99% 0.0 54.28 2601 Q8JJX1.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 71.6 71.6 70% 1e-11 24.27 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 71.2 71.2 49% 2e-11 26.47 1616 P90211.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Grapevine le... NA 651354 64.7 64.7 68% 2e-09 23.72 2772 O71189.3 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 61.6 61.6 29% 1e-08 28.65 822 P03594.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 55.5 55.5 27% 1e-06 26.79 808 P20179.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 50.8 50.8 52% 4e-05 23.85 1629 P89202.2 RecName: Full=Hemoglobin and hemoglobin-haptoglobin-binding... Haemophilus ... NA 727 34.7 34.7 17% 3.0 23.76 1066 Q9X442.1 RecName: Full=Probable hemoglobin and... Haemophilus ... NA 71421 34.3 34.3 13% 3.7 26.58 1063 P44795.2 RecName: Full=Hemoglobin and hemoglobin-haptoglobin-binding... Haemophilus ... NA 727 33.9 33.9 12% 5.8 27.78 1067 Q9KIV1.1 RecName: Full=Probable hemoglobin and... Haemophilus ... NA 71421 33.1 33.1 11% 9.1 27.54 1084 P44836.1 Alignments: >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 995 Score:1278 bits(3306), Expect:0.0, Method:Compositional matrix adjust., Identities:610/610(100%), Positives:610/610(100%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 445 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA Sbjct 446 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 505 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA Sbjct 506 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 565 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF Sbjct 566 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 625 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK Sbjct 626 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 685 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF Sbjct 686 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 745 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR Sbjct 746 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 805 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE Sbjct 806 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 865 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK Sbjct 866 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 925 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG Sbjct 926 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 985 Query 601 PVIDLYGGPK 610 PVIDLYGGPK Sbjct 986 PVIDLYGGPK 995 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2429 Score:996 bits(2574), Expect:0.0, Method:Compositional matrix adjust., Identities:472/616(77%), Positives:537/616(87%), Gaps:11/616(1%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQ L + V EE+++ PK D E+E+LLLL+MQM P+EAN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV------TPTTDCRYVTHKHPKPMYSTSVAFYL 114 KSRYQSRKVENMKA V+DRL GA+L+ PT RY P+P+YS +V Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRY-----PRPVYSPTVIERF 1933 Query 115 SSAKTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKK 174 SS A+AACNE+LSRNYPTV SYQITDEYDAYLDMVDGS+SCLDRA FCP+KLR +PK Sbjct 1934 SSPDVAIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKH 1993 Query 175 HSYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNN 234 H+YH+ +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK+YAC+ Sbjct 1994 HAYHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSG 2053 Query 235 DYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVK 294 +YW+E+A++PIR+TTENIT+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVK Sbjct 2054 EYWEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVK 2113 Query 295 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDA 354 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDA Sbjct 2114 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDA 2173 Query 355 IISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTH 414 II+ HF PGD VLETDIASFDKSQDDSLA TGLM+LEDLGVDQ LL+LIEA+FGEI+S H Sbjct 2174 IIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCH 2233 Query 415 LPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKS 474 LPTGTRFKFGAMMKSGMFLTLF+NT+LN+TIASRVLE+RLT+S CAAFIGDDNIVHGV S Sbjct 2234 LPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVIS 2293 Query 475 DKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKP 534 DKL+AERCA+W+NMEVKIIDAVM E+PPYFCGGFIVFD VT T CRV+DPLKRLFKLGKP Sbjct 2294 DKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKP 2353 Query 535 LPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHN 594 L AEDKQDEDRRRAL+DE +W R G+ A+LE A+ SRYEVEG ++++ A+ TL+R+ Sbjct 2354 LTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKA 2413 Query 595 FRHLRGPVIDLYGGPK 610 F+ LRGPVI LYGGP+ Sbjct 2414 FKKLRGPVIHLYGGPR 2429 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1149 Score:993 bits(2568), Expect:0.0, Method:Compositional matrix adjust., Identities:472/613(77%), Positives:534/613(87%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEE-RVFAPKCDKEKERLLLLQMQMAPTEA 59 YIFSSDTGPGHLQQ+SVRQ L C VHEE R + P D+ +E+LL +MQMAPTEA Sbjct 539 YIFSSDTGPGHLQQKSVRQHALP-CEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEA 597 Query 60 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD--CRYVTHKHPKPMYSTSVAFYLSSA 117 NKSRYQSRKVENMKA +IDRL GA+ ++T ++ YV+ K+P+P+YS SV L + Sbjct 598 NKSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVS-KYPRPVYSPSVEDSLQNP 656 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 + AVAACN FL NYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+Y Sbjct 657 EVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAY 716 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H+ ++RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKK+ACN +YW Sbjct 717 HQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYW 776 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EF PIR+TTENIT+YVTRLKGPKAAALFAKT++L PLQEVPMDRFVVDMKRDVKVTP Sbjct 777 QEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTP 836 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 837 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIA 896 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPT Sbjct 897 AHFQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPT 956 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+ IA RVL E+LTNS CAAFIGDDNIVHGV+SD L Sbjct 957 GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPL 1016 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D+VTG+ CRVADPLKRLFKLGKPLPA Sbjct 1017 MAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPA 1076 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D QDEDRRRAL DE RW RVG++++LE A++SRYEV G N++ A+ TL+++ NF+ Sbjct 1077 GDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKK 1136 Query 598 LRGPVIDLYGGPK 610 LRGP++ LYGGPK Sbjct 1137 LRGPIVHLYGGPK 1149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2480 Score:987 bits(2551), Expect:0.0, Method:Compositional matrix adjust., Identities:466/611(76%), Positives:527/611(86%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQ+SVRQ L + EER + P D+ +E+LL +MQMAPTEAN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD-CRYVTHKHPKPMYSTSVAFYLSSAKT 119 KSRYQSRKVENMKA +IDRL GA+ ++ ++ K+P+P+YS SV L S + Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 120 AVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHR 179 AVAACN FL NYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+YH+ Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 180 AEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDE 239 ++RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW E Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGT 299 F PIR+TTENIT+YVTRLKGPKAAALFAKT++L PLQEVPMDRFVVDMKRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ H Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGT 419 F+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIE +FGEITS HLPTGT Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 420 RFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLA 479 RFKFGAMMKSGMFLTLF+NT+LN+ IA RVL E+LTNS CAAFIGDDNIVHGV+SD L+A Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 480 ERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAED 539 ERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D VTG+ CRVADPLKRLFKLGKPLPA D Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 540 KQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLR 599 QDEDRRRAL DE RW RVG++++LE A++SRYEV G N++ A+ TL+++ NF+ LR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 600 GPVIDLYGGPK 610 GP++ LYGGPK Sbjct 2470 GPIVHLYGGPK 2480 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2437 Score:986 bits(2550), Expect:0.0, Method:Compositional matrix adjust., Identities:465/611(76%), Positives:533/611(87%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSD GPGHLQQ+SVRQ L + + V EE+V+ PK D+ KE+ LLL++QM T+AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTH-KHPKPMYSTSVAFYLSSAKT 119 +SRYQSRKVENMKA +IDRL G+ +V+ D H ++ KP YS V LSSA Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 120 AVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHR 179 AVA CNEFL+RNYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+YH Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 180 AEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDE 239 +IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV+NVECF+KYACNN+YW+E Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGT 299 FA+KPIR+TTEN+T+YVT+LKG KAAALFAKT++L PLQEVPMDRF++DMKRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEH 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAIISEH Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 360 FRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGT 419 F+PGD VLETDIASFDKSQDDSLA TGLM+LEDLGVD LL+LIEA+FG+ITS HLPTGT Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 420 RFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLA 479 RFKFGAMMKSGMFLTLF+NT+LN+TIASRVLE RLTNS CAAFIGDDN+VHGV SDKL+A Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 480 ERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAED 539 +RCA W+NMEVKIIDAVMC +PPYFCGGF+V+D VT T CR+ADPLKRLFKLGKPLPA+D Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 540 KQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLR 599 QDEDRRRAL DE ++W+R G+ +++E A+ SRY +EG N++ A++T + + NF LR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 600 GPVIDLYGGPK 610 GPVI LYGGPK Sbjct 2427 GPVIHLYGGPK 2437 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2513 Score:983 bits(2540), Expect:0.0, Method:Compositional matrix adjust., Identities:470/613(77%), Positives:529/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L + E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP +T+ P P+YS S+ LS+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITY--PAPVYSPSINIKLSNP 2020 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 +TAVA CNEFL+RNYPTV SYQ+TDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 2021 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2080 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKKYACN +YW Sbjct 2081 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2140 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T YVT+LKGPKAAALFAKT++L PLQEVPMDRF +DMKRDVKVTP Sbjct 2141 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2200 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2201 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2260 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T +MLLEDLGVDQP+L+LIEA+FGEI+S HLPT Sbjct 2261 THFKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2320 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLEERLT S CAAFIGDDNI+HGV SD L Sbjct 2321 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2380 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2381 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2440 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI VIT++ T + + NF+ Sbjct 2441 GDEQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKK 2500 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2501 LRGPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2467 Score:982 bits(2539), Expect:0.0, Method:Compositional matrix adjust., Identities:463/612(76%), Positives:531/612(86%), Gaps:3/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHE-ERVFAPKCDKEKERLLLLQMQMAPTEA 59 YIFSSDTGPGHLQQRSVRQ L C HE ER++ P D EKE++L +MQMAPTEA Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELP-CETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEA 1915 Query 60 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD-CRYVTHKHPKPMYSTSVAFYLSSAK 118 NKSRYQSRKVENMKA +++RL GAKL++ TD T K+P+P+YS SV LS+ + Sbjct 1916 NKSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPE 1975 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVAACN FL NYPTV +YQITDEYDAYLD+VDGSESCLDRA FCP+KLR +PK H+YH Sbjct 1976 VAVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYH 2035 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 + +IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVE FKKYAC +YW Sbjct 2036 QPQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQ 2095 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EF PIR+TTENIT+YV +LKGPKAAALFAKT++L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2096 EFKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPG 2155 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 2156 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAA 2215 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPTG Sbjct 2216 HFQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTG 2275 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLF+NT+LN+ IA RVL ++L++S CAAFIGDDNIVHGV+SD L+ Sbjct 2276 TRFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLM 2335 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D V GT CRVADPLKRLFKLGKPLPA+ Sbjct 2336 AERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPAD 2395 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D QDEDRRRAL DE +W+R+G++ +L+ A++SRY+V G+ N+ A++TLS+N +FR + Sbjct 2396 DNQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKI 2455 Query 599 RGPVIDLYGGPK 610 RGP+I LYGGPK Sbjct 2456 RGPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2513 Score:982 bits(2539), Expect:0.0, Method:Compositional matrix adjust., Identities:470/613(77%), Positives:530/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L + E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP +T+ P P+YS S++ L++ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITY--PAPVYSPSISIKLNNP 2020 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 +TAVA CNEFL+RNYPTV SYQ+TDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 2021 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2080 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKKYACN +YW Sbjct 2081 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2140 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T YVT+LKGPKAAALFAKT++L PLQEVPMDRF +DMKRDVKVTP Sbjct 2141 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2200 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS Sbjct 2201 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 2260 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T +MLLEDLGVDQP+L+LIEA+FGEI+S HLPT Sbjct 2261 THFKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2320 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLEERLT S CAAFIGDDNI+HGV SD L Sbjct 2321 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2380 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2381 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2440 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI VIT++ T + + NF+ Sbjct 2441 GDEQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKK 2500 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2501 LRGPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2514 Score:981 bits(2537), Expect:0.0, Method:Compositional matrix adjust., Identities:470/613(77%), Positives:529/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L + E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP VT+ P P+YS S+ L++ Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPSYRVTY--PAPIYSPSINIKLTNP 2021 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 +TAVA CNEFL+RNYPTV SYQ+TDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 2022 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2081 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFKKYACN +YW Sbjct 2082 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2141 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T YVT+LKGPKAAALFAKT++L PLQEVPMDRF +DMKRDVKVTP Sbjct 2142 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2201 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2202 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2261 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T +MLLEDLGVDQP+L+LIEA+FGEI+S HLPT Sbjct 2262 THFKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2321 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLEERLT S CAAFIGDDNI+HGV SD L Sbjct 2322 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2381 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2382 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2441 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI VIT++ T + + NF+ Sbjct 2442 GDEQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKK 2501 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2502 LRGPVVTLYGGPK 2514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2467 Score:978 bits(2528), Expect:0.0, Method:Compositional matrix adjust., Identities:461/612(75%), Positives:530/612(86%), Gaps:3/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHE-ERVFAPKCDKEKERLLLLQMQMAPTEA 59 YIFSSDTGPGHLQQ+SVRQ L C HE ER++ P D EKE++L +MQMAPTEA Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELP-CETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEA 1915 Query 60 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD-CRYVTHKHPKPMYSTSVAFYLSSAK 118 NKSRYQSRKVENMKA +++RL GAKL++ TD T K+P+P+YS SV LS + Sbjct 1916 NKSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPE 1975 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVAACN FL NYPTV +YQITDEYDAYLD+VDGSESCLDRA FCP+KLR +PK H+YH Sbjct 1976 VAVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYH 2035 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 + +IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVE FKKYAC +YW Sbjct 2036 QPQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQ 2095 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EF PIR+TTENIT+YV +LKGPKAAALFAKT++L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2096 EFKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPG 2155 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 2156 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAA 2215 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPTG Sbjct 2216 HFQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTG 2275 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLF+NT+LN+ IA RVL ++L++S CAAFIGDDNIVHGV+SD L+ Sbjct 2276 TRFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLM 2335 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D V GT CRVADPLKRLFKLGKPLPA+ Sbjct 2336 AERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPAD 2395 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D QDEDRRRAL DE +W+R+G++ +L+ A++SRY+V G+ N+ A++TLS++ +FR + Sbjct 2396 DNQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKI 2455 Query 599 RGPVIDLYGGPK 610 RGP+I LYGGPK Sbjct 2456 RGPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2474 Score:977 bits(2525), Expect:0.0, Method:Compositional matrix adjust., Identities:468/613(76%), Positives:528/613(86%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQRSVRQT L E+V EE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA ++ RL GG KL++ TP T+ P P+YS + LS+ Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTY--PAPVYSPPINIRLSNP 1981 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 ++AVAACNEFL+RNYPTV SYQITDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+HSY Sbjct 1982 ESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2041 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW Sbjct 2042 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 2101 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 EFA PIR+TTEN+T+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVKVTP Sbjct 2102 KEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2162 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2221 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVD PLL+LIEA+FGEI+S HLPT Sbjct 2222 AHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPT 2281 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLE+RLT S CAAFIGDDNI+HGV SD+L Sbjct 2282 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDEL 2341 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ ++ PYFCGGFI++D V GT CRVADPLKRLFKLGKPL A Sbjct 2342 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAA 2401 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QD+DRRRALADE RW R G+ +LE A++SRYEV+GI V+ ++ T + + NF Sbjct 2402 GDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEK 2461 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2462 LRGPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2474 Score:968 bits(2503), Expect:0.0, Method:Compositional matrix adjust., Identities:465/613(76%), Positives:527/613(85%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQ+SVRQ+ L E+VHEE+ + PK D+ KE+LLL ++Q + + AN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFV---TPTTDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +I RL G +L++ TP T+ P P+YS + LS+ Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTY--PAPVYSPPINVRLSNP 1981 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 ++AVAACNEFL+RNYPTV+SYQITDEYDAYLDMVDGSESCLDRA F PSKLRS+PK+H+Y Sbjct 1982 ESAVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAY 2041 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 H IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKK+ACN +YW Sbjct 2042 HAPSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 2101 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 +EFA PIR+TTEN+T+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVKVTP Sbjct 2102 EEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII+ Sbjct 2162 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2221 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 HF+PGD VLETDIASFDKSQDDSLA T LMLLEDLGVD LL+LIEA+FGEI+S HLPT Sbjct 2222 AHFKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPT 2281 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT+LN+TIASRVLE+RLT S CAAFIGDDNI+HGV SD+L Sbjct 2282 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDEL 2341 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +A RCA WMNMEVKIIDAV+ ++ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A Sbjct 2342 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAA 2401 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 D+QDEDRRRALADE RW R G+ +LE A+ SRYEV+GI V+ ++ T + + NF Sbjct 2402 GDEQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEK 2461 Query 598 LRGPVIDLYGGPK 610 LRGPV+ LYGGPK Sbjct 2462 LRGPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2513 Score:932 bits(2410), Expect:0.0, Method:Compositional matrix adjust., Identities:449/612(73%), Positives:511/612(83%), Gaps:4/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFS+DTGPGHLQ++SV Q +L + E ER+ AP D KE L L+ QM PTEAN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT--TDCRYVTHKHPKPMYSTSVAFYLSSAK 118 KSRYQSRKVEN KA +RLL G +L+ + T +C +T+ PKP+YS+SV S + Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITY--PKPLYSSSVPANYSDPQ 2021 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVA CN +L NYPTV SYQITDEYDAYLDMVDG+ +CLD A FCP+KLRS+PKKH Y Sbjct 2022 FAVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEYR 2081 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 IRSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA FNVECF+KYACN++YW+ Sbjct 2082 APNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWE 2141 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EFA+KPIR+TTE +T+YV RLKGPKAAALFAKTY+L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2142 EFARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTPG 2201 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+E Sbjct 2202 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAE 2261 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+ GD VLETDIASFDKSQDD++A TGLM+LEDLGVDQPLL+LIE +FGEI+STHLPTG Sbjct 2262 HFKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTG 2321 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLFVNT+LN+ IASRVLEERL S+CAAFIGDDNI+HGV SDK + Sbjct 2322 TRFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKEM 2381 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA W+NMEVKIIDAV+ ERPPYFCGGFI+ D VT T CRVADPLKRLFKLGKPLPA+ Sbjct 2382 AERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPAD 2441 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D+QDEDRRRAL DE + W RVGI L A+ +RYEV+ I V+ AL T +++ F+ + Sbjct 2442 DEQDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQAI 2501 Query 599 RGPVIDLYGGPK 610 RG + LYGGPK Sbjct 2502 RGEIKHLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2515 Score:932 bits(2408), Expect:0.0, Method:Compositional matrix adjust., Identities:450/612(74%), Positives:511/612(83%), Gaps:4/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFS+DTGPGHLQ +SV Q +L + E ER++AP D KE L L+ QM PTEAN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT--TDCRYVTHKHPKPMYSTSVAFYLSSAK 118 KSRYQSRKVEN KA +RLL G +L+ + T +C +T+ PKP YS+SVA S K Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITY--PKPSYSSSVAANYSDPK 2023 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 AVA CN +L NYPTV SYQITDEYDAYLDMVDG+ +CLD A FCP+KLRS+PK+H Y Sbjct 2024 FAVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEYR 2083 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 IRSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA FNVECF+KYACN++YW+ Sbjct 2084 APNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWE 2143 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 EFA+KPIR+TTE +T+YV RLKGPKAAALFAKT++L PLQEVPMDRFV+DMKRDVKVTPG Sbjct 2144 EFARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPG 2203 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+E Sbjct 2204 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAE 2263 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+ GD VLETDIASFDKSQDD++A TGLM+LEDLGVDQPLL+LIE +FGEI+STHLPTG Sbjct 2264 HFKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTG 2323 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLFVNT+LN+ IASRVLEERL SKCAAFIGDDNI+HGV SDK + Sbjct 2324 TRFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKEM 2383 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 AERCA W+NMEVKIIDAV+ ERPPYFCGGFI+ D VT T CRVADPLKRLFKLGKPLPA+ Sbjct 2384 AERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPAD 2443 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D+QDEDRRRAL DE + W RVGI L A+ +RYEV+ I V+ AL T +++ F+ + Sbjct 2444 DEQDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQAI 2503 Query 599 RGPVIDLYGGPK 610 RG + LYGGPK Sbjct 2504 RGEIKHLYGGPK 2515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2411 Score:911 bits(2354), Expect:0.0, Method:Compositional matrix adjust., Identities:441/612(72%), Positives:504/612(82%), Gaps:4/612(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQRSV Q A+C+ E E++ APK DK KE +L + QM P+EAN Sbjct 1802 YIFSSDTGPGHLQQRSVLQNCTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPSEAN 1861 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT--TDCRYVTHKHPKPMYSTSVAFYLSSAK 118 KSRYQSRKVENMKAE++ RLL G ++ +C +T+ P P+YSTS LSSAK Sbjct 1862 KSRYQSRKVENMKAEIVGRLLDGLGEYLGTEHPVECYRITY--PVPIYSTSDLRGLSSAK 1919 Query 119 TAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYH 178 TAV ACN FL N+P+VTSY+ITDEYDAYLDMVDGSESCLDR++F PS+LRSFPK HSY Sbjct 1920 TAVRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHSYL 1979 Query 179 RAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWD 238 +I SAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT DSAV NVE F+KYAC D WD Sbjct 1980 DPQINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDVWD 2039 Query 239 EFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPG 298 E+ PI +TTEN+T+YV +LKGPKAAALFAKT++L PL +VPMD+F VDMKRDVKVTPG Sbjct 2040 EYRDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVTPG 2099 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLN L PN+HTLFDMSAEDFDAII+E Sbjct 2100 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAIIAE 2159 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 HF+ GD VLETDIASFDKSQDDS+A T LM+LEDLGVDQ L+ LIEA+FGEI STHLPTG Sbjct 2160 HFKHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLPTG 2219 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRFKFGAMMKSGMFLTLFVNT+LN+ IA RVLE++L S AFIGDDNI+HG+ SDKL+ Sbjct 2220 TRFKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDKLM 2279 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 A+RCA WMNMEVKI+D+++ RPPYFCGGFIV D VTGT CRVADPLKRLFKLGKPLP + Sbjct 2280 ADRCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLPLD 2339 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 D QDEDRRRAL DE + W+RVG++ + A+ RY V V+ ALTTLS+N +FR++ Sbjct 2340 DGQDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFRNI 2399 Query 599 RGPVIDLYGGPK 610 RG I LYGGPK Sbjct 2400 RGKPIHLYGGPK 2411 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2499 Score:910 bits(2351), Expect:0.0, Method:Compositional matrix adjust., Identities:441/610(72%), Positives:497/610(81%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTGPGHLQQ+SV Q + + E E++ AP D +KE +L + QM+PT AN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 KSRYQSRKVENMKA RLL G K++VTP + + +PKPMYS SV S + A Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 2009 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 VA CN F NYPTV SYQITDEYDAYLDMV+GS SCLD A FCP+KLRSFPK HSY Sbjct 2010 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 2069 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKKYACN DYW+EF Sbjct 2070 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 2129 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 +KPIR+TTE +TSYV RLKGP+AAALFAKT+ L PLQEVPMDRFV+DMKRDVKVTPGTK Sbjct 2130 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 2189 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+ +F Sbjct 2190 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 2249 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 VLETDI SFDKSQDDSLA T LM+LEDLGVD L++LIE +FGEITS HLPT T Sbjct 2250 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 2309 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL +SKCAAFIGDDNI+HGV SDK++A+ Sbjct 2310 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 2369 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA WMNMEVKIIDAV+ + PYFCGGFI+ DQVT T CRV+DPLKRLFKLGKPLP +D+ Sbjct 2370 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 2429 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 QD DRRRAL DE + W RVGIQ +L A+ SRYEV+ ++ V+ AL T SR+ F+ LRG Sbjct 2430 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 2489 Query 601 PVIDLYGGPK 610 LYGGPK Sbjct 2490 SPRHLYGGPK 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:900 bits(2325), Expect:0.0, Method:Compositional matrix adjust., Identities:428/610(70%), Positives:504/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+SVRQ +L + + + E+ +AP+ D E+E++L ++Q+ +E N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTD---CRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +RL+ G +++ + C V +P P+YS++V +SA Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRV--NYPVPIYSSTVINRFTSA 1977 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 + AV CN + NYPTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRS+PKKHSY Sbjct 1978 EVAVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSY 2037 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 + EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNV+CFKKYACN++YW Sbjct 2038 LQPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYW 2097 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 D F PIRLTTEN+T YVT+LKGPKAAALFA T++LKPLQE+PMD+FV+D+KRDVKVTP Sbjct 2098 DTFRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTP 2157 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2158 GTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2217 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF GD VLETDIASFDKS+DD++A + LM+LEDLGVDQPLL+LIEA+FG ITS HLPT Sbjct 2218 EHFHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPT 2277 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAA IGDDNIVHGV SD L Sbjct 2278 GTRFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTL 2337 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDAV+ + PYFCGGFI+ DQ+TGT CRVADPLKRLFKLGKPLP Sbjct 2338 MAERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPV 2397 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRYE+ +IT+L+TL+ + NF+ Sbjct 2398 DDTQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKS 2457 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2458 IRGSPITLYG 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:897 bits(2318), Expect:0.0, Method:Compositional matrix adjust., Identities:442/610(72%), Positives:506/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+S RQ +L + + E E+ +AP+ D E+E+LL ++Q+ +E N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTT---DCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +RLL G +++ + +C V +P P+YST+ + SSA Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKV--NYPVPIYSTTRSNRFSSA 1984 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 AV CN L N+PTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRSFPKKHSY Sbjct 1985 DVAVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSY 2044 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 R EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACN++YW Sbjct 2045 LRPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYW 2104 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 D F PIRLTTEN+T YVT+LKGPKAAALFAKT++L+PL E+PMDRFV+D+KRDVKVTP Sbjct 2105 DTFKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTP 2164 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2165 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2224 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF+ GDAVLETDIASFDKS+DD++A + LM+LEDLGVDQ LL+LIEA+FG ITS HLPT Sbjct 2225 EHFQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPT 2284 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLF+NT++N+ IASRVL ERLTNS CAAFIGDDNIV GVKSD L Sbjct 2285 GTRFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDAL 2344 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDA + + PYFCGGFIV DQVTGT CRVADPLKRLFKLGKPLP Sbjct 2345 MAERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPL 2404 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRYEV I VITALTTL+ NF++ Sbjct 2405 DDDQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKY 2464 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2465 IRGNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:891 bits(2303), Expect:0.0, Method:Compositional matrix adjust., Identities:436/610(71%), Positives:505/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+S RQ +L + E E+ +AP+ D E+E+LL ++Q+ +E N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT---TDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA +RLL G +++ +C + +P P+YST+ + SSA Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKI--NYPVPVYSTTRSNRFSSA 1981 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 AV CN + N+PTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRSFPKKHSY Sbjct 1982 DVAVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSY 2041 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 + EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACN++YW Sbjct 2042 LKPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYW 2101 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 + F PIRLTTEN+T YVT+LKGPKAAALFAKT++L+PL E+PMDRFV+D+KRDVKVTP Sbjct 2102 ETFKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2162 GTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2221 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF+ GDAVLETDIASFDKS+DD++A + LM+LEDLGVDQ LL+LIEA+FG ITS HLPT Sbjct 2222 EHFQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPT 2281 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLF+NT++N+ IASRVL ERLTNS CAAFIGDDNIV GVKSD L Sbjct 2282 GTRFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDAL 2341 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDAV+ + PYFCGGFIV DQ+TGT CRVADPLKRLFKLGKPLP Sbjct 2342 MAERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPL 2401 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRY+V I VITAL+TL+ NF+H Sbjct 2402 DDDQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKH 2461 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2462 IRGNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:889 bits(2298), Expect:0.0, Method:Compositional matrix adjust., Identities:437/610(72%), Positives:505/610(82%), Gaps:5/610(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSS+TG GHLQQ+S RQ +L + E E+ +AP+ D E+E+LL ++Q+ +E N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPT---TDCRYVTHKHPKPMYSTSVAFYLSSA 117 +SRYQSRKVENMKA ++RLL G +++ +C VT+ P PMYS++ + SSA Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTY--PAPMYSSTASNSFSSA 2004 Query 118 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 177 + AV CN L N+PTV SY ITDEYDAYLDMVDG+ CLD A FCP+KLRSFPKKHSY Sbjct 2005 EVAVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSY 2064 Query 178 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 237 R EIRSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACN++YW Sbjct 2065 LRPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYW 2124 Query 238 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 297 D + PIRLT EN+T YVT+LKGPKAAALFAKT++L+PL E+PMDRFV+D+KRDVKVTP Sbjct 2125 DFYKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTP 2184 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 357 GTKHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+ Sbjct 2185 GTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIA 2244 Query 358 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 417 EHF+ GDAVLETDIASFDKS+DD++A + LM+LEDLGVDQ LL LIEA+FG ITS HLPT Sbjct 2245 EHFQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPT 2304 Query 418 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 477 GTRFKFGAMMKSGMFLTLF+NT++N+ IASRVL ERLT S CAAFIGDDNIV GV SD L Sbjct 2305 GTRFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDAL 2364 Query 478 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 537 +AERCA W+NMEVKIIDAV+ + PYFCGGFIV DQ+TGT CRVADPLKRLFKLGKPLP Sbjct 2365 MAERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPL 2424 Query 538 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 597 +D QD DRRRAL DEA RWNR+GI +L A+ SRYEV + +ITALTTL+ + NF+H Sbjct 2425 DDDQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKH 2484 Query 598 LRGPVIDLYG 607 +RG I LYG Sbjct 2485 IRGHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:873 bits(2256), Expect:0.0, Method:Compositional matrix adjust., Identities:430/607(71%), Positives:497/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D+EKE LL ++Q+ PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSRKVENMKA R+L G ++ HP P+YS+SV SS K A Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKHSY Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ F Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAALFAKT++L LQ++PMDRFV+D+KRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2187 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNIV GVKSDKL+A+ Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A+D+ Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2426 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G ++ A+TTL+ + +F +LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 PVIDLYG 607 I LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:871 bits(2251), Expect:0.0, Method:Compositional matrix adjust., Identities:429/607(71%), Positives:496/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D+EKE LL ++Q+ PT AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS+SV SS K A Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 1998 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKHSY Sbjct 1999 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2058 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ F Sbjct 2059 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2118 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAALFAKT++L LQ++PMDRFV+D+KRDVKVTPGTK Sbjct 2119 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2178 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2179 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2238 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2239 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2298 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNIV GVKSDKL+A+ Sbjct 2299 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2358 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL A+D+ Sbjct 2359 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2418 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI +L A+ SRYE G ++ A+TTL+ + +F +LRG Sbjct 2419 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2478 Query 601 PVIDLYG 607 I LYG Sbjct 2479 APITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:868 bits(2244), Expect:0.0, Method:Compositional matrix adjust., Identities:427/607(70%), Positives:494/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D+EKE LL ++Q+ PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS+SV SS K A Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKHSY Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ F Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAALFAKT++L LQ++PMDRFV+D+KRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATA LCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2187 HTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 FKFGAMMKSGMFLTLFVNT++N+ IASRVL ERLT S CAAFIGDDNIV GVKSDKL+A+ Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2426 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI +L A+ SRYE G ++ A+TTL+ + +F +LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 PVIDLYG 607 I LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:868 bits(2243), Expect:0.0, Method:Compositional matrix adjust., Identities:424/607(70%), Positives:495/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D KE +L ++Q+ PT+AN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS SV SS K A Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2012 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKH+Y Sbjct 2013 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2072 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ + Sbjct 2073 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2132 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAAL+AKT++L LQ++PMDRF++D+KRDVKVTPGTK Sbjct 2133 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2192 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2193 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2252 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2253 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2312 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 F+FGAMMKSGMFLTLFVNT++NM IASRVL ERLTNS CAAFIGDDNIV GVKSDKL+A+ Sbjct 2313 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2372 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 2373 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2432 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G +I A+TTL+ + +F +LRG Sbjct 2433 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLRG 2492 Query 601 PVIDLYG 607 I LYG Sbjct 2493 APISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:866 bits(2238), Expect:0.0, Method:Compositional matrix adjust., Identities:424/607(70%), Positives:494/607(81%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSDTG GHLQQ+SVRQT L++ V E E +AP+ D KE +L ++Q+ PT+AN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 +SRYQSR+VENMKA R+L G ++ HP P+YS SV SS K A Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2010 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 V ACN L N+PTV SY I EYDAYLDMVDG+ CLD A+FCP+KLRSFPKKH+Y Sbjct 2011 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2070 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 240 IRSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA FNVECFKKYACNN+YW+ + Sbjct 2071 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2130 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 300 + PIRLT EN+ +Y+T+LKGPKAAAL+AKT++L LQ++PMDRF++D+KRDVKVTPGTK Sbjct 2131 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2190 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVLLPN+HTLFDMSAEDFDAII+EHF Sbjct 2191 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2250 Query 361 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 420 +PGD VLETDIASFDKS+DD++A T LM+LEDLGVD LL LIEA+FGEI+S HLPT T+ Sbjct 2251 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2310 Query 421 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 480 F+FGAMMKSGMFLTLFVNT++NM IASRVL ERLTNS CAAFIGDDNIV GVKSDKL+A+ Sbjct 2311 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2370 Query 481 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 540 RCA W+NMEVKIIDAV+ E+ PYFCGGFI+ D VTGT CRVADPLKRLFKLGKPL +D+ Sbjct 2371 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2430 Query 541 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 600 D+DRRRAL +E+ RWNRVGI ++L A+ SRYE G +I A+TTL+ + +F LRG Sbjct 2431 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 2490 Query 601 PVIDLYG 607 I LYG Sbjct 2491 APIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:666 bits(1719), Expect:0.0, Method:Compositional matrix adjust., Identities:334/613(54%), Positives:424/613(69%), Gaps:12/613(1%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLL-----LQMQMA 55 YIFSSD G HL Q + + + + P D LL L QM Sbjct 1985 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTS-----VLPSNDHGTPDLLAEMKKRLAYQMR 2039 Query 56 PTEANKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLS 115 PT+ NKSRY S KV NMK +++ L GA ++ + PKP YS + Sbjct 2040 PTQKNKSRYLSAKVHNMKHKIVQCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFE 2099 Query 116 SAKTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKH 175 S TA+ A N F+ NYPT++S+ +TD+YDAYLDMVDG LD F P+K+RS PKK Sbjct 2100 SVNTAIVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVRSLPKKS 2159 Query 176 SYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYAC-NN 234 Y++ I+S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA NVE FKK+AC + Sbjct 2160 KYNQPLIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKKFACKDT 2219 Query 235 DYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKP-LQEVPMDRFVVDMKRDV 293 D W EFA+KP+RL+ I YV L+G KA + ++ P L EV MDRF +DMKRDV Sbjct 2220 DLWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTLDMKRDV 2279 Query 294 KVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFD 353 KVTPGTKH EERPKVQVIQAA+P+ATAYLC IHRELVRRL AVL P++H LFDMS+EDFD Sbjct 2280 KVTPGTKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFD 2339 Query 354 AIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITST 413 AI+ + GD VLETDI+SFDKSQD ++A T LMLLEDLGV++ LL LIEASFG+ITS Sbjct 2340 AIVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASFGDITSV 2399 Query 414 HLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVK 473 HLPTGTRF+FG+MMKSG+FLTLFVNT+LN+TIA+RVL E+L +++CAAFIGDDN++ GV Sbjct 2400 HLPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVV 2459 Query 474 SDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGK 533 SD ++ RCA+W+NMEVKI++ + +R PYFCGGF++ D VTGT RV+DP+KRL K+GK Sbjct 2460 SDDMMVARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGK 2519 Query 534 PLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYH 593 P + + D DR RAL +E + W RVGIQ L+ A +RY V + A+ TL+++ Sbjct 2520 PALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLR 2579 Query 594 NFRHLRGPVIDLY 606 ++ RG + LY Sbjct 2580 SYLGARGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:659 bits(1700), Expect:0.0, Method:Compositional matrix adjust., Identities:330/608(54%), Positives:418/608(68%), Gaps:2/608(0%) Query 1 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 60 YIFSSD G HL Q + + + + D E L QM PT+ N Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLPAETRKRLAYQMRPTQKN 2052 Query 61 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 120 KSRY S KV NMK +++ L GA ++ + PKP YS + S TA Sbjct 2053 KSRYLSAKVHNMKHKIVRCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFESVNTA 2112 Query 121 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 180 + A N F+ NYPT++S+ ITD+YDAYLDMVDG LD F P+K+RS PKK Y++ Sbjct 2113 IVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVRSLPKKSEYNQP 2172 Query 181 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYAC-NNDYWDE 239 I+S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA NVE FK +AC + D W E Sbjct 2173 LIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKSFACKDTDLWTE 2232 Query 240 FAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKP-LQEVPMDRFVVDMKRDVKVTPG 298 FA+KP+RL+ I YV L+G KA + ++ + P L EV MDRF +DMKRDVKVTPG Sbjct 2233 FAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTLDMKRDVKVTPG 2292 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISE 358 TKH EERPKVQ IQAA+P+ATAYLC IHRELVRRL AVL P++H LFDMS+EDFDAI+ Sbjct 2293 TKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAIVGH 2352 Query 359 HFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTG 418 + GD VLETDI+SFDKSQD ++A T LMLL DLGV++ LL LIEASFG+ITS HLPTG Sbjct 2353 GMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASFGDITSAHLPTG 2412 Query 419 TRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLL 478 TRF+FG+MMKSG+FLTLFVNT+LN+TIA+RVL E+L +++CAAFIGDDN++ GV SD ++ Sbjct 2413 TRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSDDMM 2472 Query 479 AERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAE 538 RCA+W+NMEVKI+D + PYFCGGF++ D VTGT RV+DP+KRL K+GKP + Sbjct 2473 VARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPALND 2532 Query 539 DKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHL 598 + D DR RAL +E + W RVGIQ L+ A +RY V + A+ TL+++ ++ Sbjct 2533 PETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSYLGA 2592 Query 599 RGPVIDLY 606 RG + LY Sbjct 2593 RGEYVSLY 2600 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 1148 to 1568 Score:71.6 bits(174), Expect:1e-11, Method:Compositional matrix adjust., Identities:108/445(24%), Positives:177/445(39%), Gaps:39/445(8%) Query 140 ITDEYDAY-LDMVDGSESCLD-RAAFCPSKLRSFPKKHS-YHRAEIRSAVPSPFQNTLQN 196 I +E+DA +++ D S + D R F SK PK+ + + +IR+A P L Sbjct 1148 ILNEFDAVTMNLRDISLNVKDCRIDF--SKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLE 1205 Query 197 VLAAATKRNCNVTQMR-ELPTLDSAVFNVECFKKYACNNDYWDEFAQKPIRLTTENITS- 254 L A KRN N + + D+A VE F WD + K T E + Sbjct 1206 NLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF---------WDSYVDKEFSGTNEMTMTR 1256 Query 255 -YVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQA 313 +R + ++ + D + +D + +K K +E P +Q I Sbjct 1257 ESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQTIVY 1316 Query 314 AEPLATAYLCGIHRELVRRLNAVLLPNV-HTLFDMSAEDFDAIISEHFRPGDA-----VL 367 A + EL R +LL + + F A I + F D+ +L Sbjct 1317 HSKKINAIFGPMFSELTR----MLLERIDSSKFLFYTRKTPAQIEDFFSDLDSTQAMEIL 1372 Query 368 ETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMM 427 E DI+ +DKSQ++ + E LG+D+ L E+ + + T G + Sbjct 1373 ELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRKTTLKDYTAGVKTCLWYQR 1432 Query 428 KSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVH---GVKSDKLLAERCAA 484 KSG T NT++ S ++ + AAF GDD++++ G+ + A Sbjct 1433 KSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCGDDSLIYIPKGLDLPDIQAGANLM 1490 Query 485 WMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDED 544 W N E K+ ++ YFCG +++ DPLK + KLG + E+ Sbjct 1491 W-NFEAKLFR----KKYGYFCGRYVIHHDRGAIV--YYDPLKLISKLGCKHIRDVVHLEE 1543 Query 545 RRRALADEAQRWNRVGIQADLEAAM 569 R +L D A N + L+ A+ Sbjct 1544 LRESLCDVASNLNNCAYFSQLDEAV 1568 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1293 to 1584 Score:71.2 bits(173), Expect:2e-11, Method:Compositional matrix adjust., Identities:81/306(26%), Positives:132/306(43%), Gaps:22/306(7%) Query 272 YDLKPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVR 331 YD L + R ++ + K+ + E P +Q I A I EL R Sbjct 1293 YDFVDLPAIDQYRHIIKSQPKQKLDLSIQ--SEYPSLQTIVYHSKKINALFGPIFSELTR 1350 Query 332 RLNAVLLPNVHTLFDMSAEDFDAIISEHFRPGDA-----VLETDIASFDKSQDDSLAYTG 386 ++ + + + + F + I E F DA VLE D++ +DKSQ++ Sbjct 1351 QMLSAIDTSRYLFFTRKTPE---QIEEFFSDLDAHQPMEVLELDVSKYDKSQNEFHCAVE 1407 Query 387 LMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNT-MLNMTI 445 + + LG+D+ L E+ + + T G + KSG T NT ++ + Sbjct 1408 YEIWKRLGIDEFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACM 1467 Query 446 ASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL-LAERCAAWM-NMEVKIIDAVMCERPPY 503 AS + E++ AAF GDD++V+ K +L + CA M N E K+ Y Sbjct 1468 ASMLPMEKVIK---AAFCGDDSLVYLPKGCELPNIQSCANLMWNFEAKLFKKTY----GY 1520 Query 504 FCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQA 563 FCG +++ G V DPLK + KLG + + E+ R +LAD ++ N A Sbjct 1521 FCGRYVIHHD-RGAIVYV-DPLKIISKLGAKHITDKEHLEEFRISLADVSKSLNNCAYYA 1578 Query 564 DLEAAM 569 L+ A+ Sbjct 1579 QLDEAV 1584 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Grapevine leafroll-associated virus 3 isolate NY1] Sequence ID: O71189.3 Length: 2772 Range 1: 2318 to 2729 Score:64.7 bits(156), Expect:2e-09, Method:Compositional matrix adjust., Identities:102/430(24%), Positives:172/430(40%), Gaps:31/430(7%) Query 182 IRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNV-ECFKKYACNNDYWDEF 240 IRS+V P +NTL+ L RN N + + DS + E F + N E Sbjct 2318 IRSSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEV 2377 Query 241 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKV----T 296 + + T ++ ++ + + P A + + + + +K DVK T Sbjct 2378 TESHLSSNTMLLSDWLDK-RAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNT 2436 Query 297 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII 356 P +K+ Q I + TA I V RL V+ M + A + Sbjct 2437 PLSKYVTG----QNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAAL 2492 Query 357 SEHFRPGDA----VLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITS 412 + GD E DI+ +DKSQ + ++L LGVD+ +L GE S Sbjct 2493 RNNL--GDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFC--GEYDS 2548 Query 413 THLPTGTR---FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIV 469 + T T+ G+ +SG T N+++ T+ S VL R + GDD+++ Sbjct 2549 V-VRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVL--RGLDYSYIVVSGDDSLI 2605 Query 470 HGVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLF 529 + + + +VKI + + PYFC F+V QV + V DPLK Sbjct 2606 FSRQPLDIDTSVLSDNFGFDVKIFN----QAAPYFCSKFLV--QVEDSLFFVPDPLKLFV 2659 Query 530 KLGKPLPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEG-IRNVITALTTL 588 K G ++ + ++ D ++ +NR + +L + +Y+ G + + L L Sbjct 2660 KFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKYKHSGWTYSALCVLHVL 2719 Query 589 SRNYHNFRHL 598 S N+ F L Sbjct 2720 SANFSQFCRL 2729 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 462 to 629 Score:61.6 bits(148), Expect:1e-08, Method:Compositional matrix adjust., Identities:51/178(29%), Positives:84/178(47%), Gaps:13/178(7%) Query 367 LETDIASFDKSQDD-SLAYTGLMLLEDLGVDQPLLELIEASFGE--ITSTHLPTGTRFKF 423 LE D++ FDKSQ + L + +LL LG PL + ++ H G F Sbjct 462 LEADLSKFDKSQGELHLEFQREILLA-LGFPAPLTNWWSDFHRDSYLSDPHAKVGMSVSF 520 Query 424 GAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCA 483 ++G T F NT++ M + + + L++ CA F GDD+++ L + Sbjct 521 --QRRTGDAFTYFGNTLVTMAMIAYASD--LSDCDCAIFSGDDSLIISKVKPVLDTDMFT 576 Query 484 AWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDKQ 541 + NME+K++D + PY C F+V ++ G V DPL+ + +L K D+Q Sbjct 577 SLFNMEIKVMDPSV----PYVCSKFLVETEM-GNLVSVPDPLREIQRLAKRKILRDEQ 629 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 473 to 632 Score:55.5 bits(132), Expect:1e-06, Method:Compositional matrix adjust., Identities:45/168(27%), Positives:75/168(44%), Gaps:9/168(5%) Query 367 LETDIASFDKSQDD-SLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTRFKFGA 425 LE D++ FDKSQ + L + +LL LG PL E + G Sbjct 473 LEADLSKFDKSQGELHLEFQREILLS-LGFPAPLTNWWCDFHRESMLSDPHAGVNMPVSF 531 Query 426 MMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAERCAAW 485 ++G T F NT++ M + + + + CA F GDD+++ L A + Sbjct 532 QRRTGDAFTYFGNTLVTMAMMAYCCD--MNTVDCAIFSGDDSLLICKSKPHLDANVFQSL 589 Query 486 MNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGK 533 NME+K++D + PY C F++ ++ V DP++ + +L K Sbjct 590 FNMEIKVMDPSL----PYVCSKFLLETEM-NNLVSVPDPMREIQRLAK 632 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 1314 to 1629 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:78/327(24%), Positives:128/327(39%), Gaps:18/327(5%) Query 283 DRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVH 342 D++ +KR K E P +Q I A I L RL +V+ P Sbjct 1314 DQYRHMIKRTPKAKLDLSIQSEYPALQTIVYHSKHVNAVFGPIFSCLTERLLSVVDPLRF 1373 Query 343 TLFDMSA-EDFDAIISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLE 401 F + D + + +LE DI+ +DKSQ+ + + E LG+D+ + + Sbjct 1374 KFFTRTTPADLEFFFRDMVVGDMEILELDISKYDKSQNKFHFEVEMRIWEMLGIDKYIEK 1433 Query 402 LIEASFGEITSTHLPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAA 461 + E + G + KSG T NT++ +L + A Sbjct 1434 VWENGHRKTHLRDYTAGIKTVIEYQRKSGDVTTFIGNTIIIAACLCSILP--MEKVFKAG 1491 Query 462 FIGDDNIVH---GVKSDKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTC 518 F GDD+I++ + + + W N E K+ + YFCG + + + G Sbjct 1492 FCGDDSIIYLPRNLLYPDIQSVSNNMW-NFEAKLFKKLH----GYFCGRYXLRN---GRY 1543 Query 519 CR-VADPLKRLFKLGKPLPAEDKQDEDRRRALADEAQRW-NRVGIQADLEAAMNSRY-EV 575 R + DPLK + KLG + E+ R ++ D A + N G LE+A+ + + Sbjct 1544 LRLLPDPLKIITKLGCKAIKDWDHLEEFRISMFDMACEYKNCFGFDV-LESAVKESFPKA 1602 Query 576 EGIRNVITALTTLSRNYHNFRHLRGPV 602 EG A+ N + FR L V Sbjct 1603 EGCNVAFCAIYKFLSNKYLFRTLFSDV 1629 >RecName: Full=Hemoglobin and hemoglobin-haptoglobin-binding protein C; Flags: Precursor [Haemophilus influenzae] Sequence ID: Q9X442.1 Length: 1066 Range 1: 751 to 846 Score:34.7 bits(78), Expect:3.0, Method:Compositional matrix adjust., Identities:24/101(24%), Positives:48/101(47%), Gaps:5/101(4%) Query 84 AKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTAVAACNEFLSRNYPTVTSYQITDE 143 A F PT+D Y+T KHP+ + ++KT A + + +Y T+ ++Q ++ Sbjct 751 ANGFRAPTSDEIYMTFKHPQFSIQPNTDLKAETSKTKEVAFTFYKNSSYITLNAFQ--ND 808 Query 144 YDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRAEIRS 184 Y ++D+V+ E ++ + F + + RA +R Sbjct 809 YRNFIDLVEVGERPIEEGSVV---RYPFHQNQNRDRARVRG 846 >RecName: Full=Probable hemoglobin and hemoglobin-haptoglobin-binding protein 1; Flags: Precursor [Haemophilus influenzae Rd KW20] Sequence ID: P44795.2 Length: 1063 Range 1: 752 to 828 Score:34.3 bits(77), Expect:3.7, Method:Compositional matrix adjust., Identities:21/79(27%), Positives:38/79(48%), Gaps:2/79(2%) Query 84 AKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTAVAACNEFLSRNYPTVTSYQITDE 143 A F PT+D Y+T KHP + +AKT A + +Y T++++Q + Sbjct 752 ANAFRAPTSDEIYMTFKHPDFSIGPNTNLKAETAKTKEVAFTFYKENSYLTLSAFQ--SD 809 Query 144 YDAYLDMVDGSESCLDRAA 162 Y ++D+V +D+ + Sbjct 810 YRNFIDLVFEKNKQIDKGS 828 >RecName: Full=Hemoglobin and hemoglobin-haptoglobin-binding protein B; Short=Hemoglobin-binding protein B; Flags: Precursor [Haemophilus influenzae] Sequence ID: Q9KIV1.1 Length: 1067 Range 1: 752 to 821 Score:33.9 bits(76), Expect:5.8, Method:Compositional matrix adjust., Identities:20/72(28%), Positives:38/72(52%), Gaps:2/72(2%) Query 84 AKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTAVAACNEFLSRNYPTVTSYQITDE 143 A F PT+D Y+T KHP+ + ++KT A + + +Y T+ ++Q ++ Sbjct 752 ANGFRAPTSDEIYMTFKHPQFSIQPNTDLKAETSKTKEVAFTFYKNSSYITLNAFQ--ND 809 Query 144 YDAYLDMVDGSE 155 Y ++D+V+ E Sbjct 810 YRNFIDLVEVGE 821 >RecName: Full=Probable hemoglobin and hemoglobin-haptoglobin-binding protein 3; Flags: Precursor [Haemophilus influenzae Rd KW20] Sequence ID: P44836.1 Length: 1084 Range 1: 769 to 835 Score:33.1 bits(74), Expect:9.1, Method:Compositional matrix adjust., Identities:19/69(28%), Positives:37/69(53%), Gaps:2/69(2%) Query 84 AKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTAVAACNEFLSRNYPTVTSYQITDE 143 A F PT+D Y+T KHP+ + ++KT A + + +Y T+ ++Q ++ Sbjct 769 ANGFRAPTSDEIYMTFKHPQFSIQPNTDLKAETSKTKEVAFTFYKNSSYITLNAFQ--ND 826 Query 144 YDAYLDMVD 152 Y ++D+V+ Sbjct 827 YRNFIDLVE 835