******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= house_keeping_promoters.txt CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ AFMBPDIA_00069 1.0000 100 AFMBPDIA_00087 1.0000 100 AFMBPDIA_00105 1.0000 100 AFMBPDIA_00142 1.0000 100 AFMBPDIA_00147 1.0000 100 AFMBPDIA_00159 1.0000 100 AFMBPDIA_00196 1.0000 100 AFMBPDIA_00223 1.0000 100 AFMBPDIA_00235 1.0000 100 AFMBPDIA_00252 1.0000 100 AFMBPDIA_00255 1.0000 100 AFMBPDIA_00258 1.0000 100 AFMBPDIA_00324 1.0000 100 AFMBPDIA_00325 1.0000 100 AFMBPDIA_00338 1.0000 100 AFMBPDIA_00343 1.0000 100 AFMBPDIA_00375 1.0000 100 AFMBPDIA_00380 1.0000 100 AFMBPDIA_00386 1.0000 100 AFMBPDIA_00388 1.0000 100 AFMBPDIA_00394 1.0000 100 AFMBPDIA_00449 1.0000 100 AFMBPDIA_00475 1.0000 100 AFMBPDIA_00489 1.0000 100 AFMBPDIA_00516 1.0000 100 AFMBPDIA_00521 1.0000 100 AFMBPDIA_00540 1.0000 100 AFMBPDIA_00604 1.0000 100 AFMBPDIA_00629 1.0000 100 AFMBPDIA_00638 1.0000 100 AFMBPDIA_00644 1.0000 100 AFMBPDIA_00648 1.0000 100 AFMBPDIA_00676 1.0000 100 AFMBPDIA_00697 1.0000 100 AFMBPDIA_00704 1.0000 100 AFMBPDIA_00760 1.0000 100 AFMBPDIA_00768 1.0000 100 AFMBPDIA_00786 1.0000 100 AFMBPDIA_00789 1.0000 100 AFMBPDIA_00801 1.0000 100 AFMBPDIA_00813 1.0000 100 AFMBPDIA_00825 1.0000 100 AFMBPDIA_00834 1.0000 100 AFMBPDIA_00849 1.0000 100 AFMBPDIA_00881 1.0000 100 AFMBPDIA_00905 1.0000 100 AFMBPDIA_00939 1.0000 100 AFMBPDIA_00976 1.0000 100 AFMBPDIA_01000 1.0000 100 AFMBPDIA_01036 1.0000 100 AFMBPDIA_01051 1.0000 100 AFMBPDIA_01057 1.0000 100 AFMBPDIA_01066 1.0000 100 AFMBPDIA_01070 1.0000 100 AFMBPDIA_01078 1.0000 100 AFMBPDIA_01087 1.0000 100 AFMBPDIA_01118 1.0000 100 AFMBPDIA_01128 1.0000 100 AFMBPDIA_01152 1.0000 100 AFMBPDIA_01181 1.0000 100 AFMBPDIA_01216 1.0000 100 AFMBPDIA_01223 1.0000 100 AFMBPDIA_01231 1.0000 100 AFMBPDIA_01263 1.0000 100 AFMBPDIA_01311 1.0000 100 AFMBPDIA_01326 1.0000 100 AFMBPDIA_01331 1.0000 100 AFMBPDIA_01337 1.0000 100 AFMBPDIA_01360 1.0000 100 AFMBPDIA_01363 1.0000 100 AFMBPDIA_01374 1.0000 100 AFMBPDIA_01385 1.0000 100 AFMBPDIA_01401 1.0000 100 AFMBPDIA_01404 1.0000 100 AFMBPDIA_01448 1.0000 100 AFMBPDIA_01520 1.0000 100 AFMBPDIA_01532 1.0000 100 AFMBPDIA_01599 1.0000 100 AFMBPDIA_01651 1.0000 100 AFMBPDIA_01657 1.0000 100 AFMBPDIA_01674 1.0000 100 AFMBPDIA_01682 1.0000 100 AFMBPDIA_01714 1.0000 100 AFMBPDIA_01748 1.0000 100 AFMBPDIA_01793 1.0000 100 AFMBPDIA_01815 1.0000 100 AFMBPDIA_01826 1.0000 100 AFMBPDIA_01851 1.0000 100 AFMBPDIA_01866 1.0000 100 AFMBPDIA_01878 1.0000 100 AFMBPDIA_01895 1.0000 100 AFMBPDIA_01909 1.0000 100 AFMBPDIA_01920 1.0000 100 AFMBPDIA_01935 1.0000 100 AFMBPDIA_01957 1.0000 100 AFMBPDIA_01964 1.0000 100 AFMBPDIA_01972 1.0000 100 AFMBPDIA_01999 1.0000 100 AFMBPDIA_02003 1.0000 100 AFMBPDIA_02034 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme house_keeping_promoters.txt -dna -mod zoops -nmotifs 3 -minw 6 -maxw 50 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 100 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 10000 N= 100 sample: seed= 0 hsfrac= 0 searchsize= 10000 norand= no csites= 1000 Letter frequencies in dataset: A 0.349 C 0.142 G 0.189 T 0.32 Background letter frequencies (from file dataset with add-one prior applied): A 0.349 C 0.142 G 0.189 T 0.32 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRAGGRGR MEME-1 width = 8 sites = 79 llr = 488 E-value = 2.0e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 46a::425 pos.-specific C 1::::::: probability G 34:aa463 matrix T 1::::222 bits 2.8 2.5 ** 2.3 ** 2.0 ** Relative 1.7 ** Entropy 1.4 *** (8.9 bits) 1.1 *** 0.8 **** * 0.6 **** * 0.3 ******** 0.0 -------- Multilevel AAAGGAGA consensus GG GAG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- AFMBPDIA_01152 90 8.56e-06 AGTGGTTTAC GGAGGGGA AAC AFMBPDIA_00760 86 8.56e-06 TACCTAGTTA GGAGGGGA ACTGAAC AFMBPDIA_00604 85 1.41e-05 TTTTATTTTC AGAGGGGG AATGATTT AFMBPDIA_01223 84 2.99e-05 TAAGTATATT AGAGGGGA GTTGCTTTA AFMBPDIA_00388 84 2.99e-05 TGTATAACAT AGAGGGGA GAAAAGGCA AFMBPDIA_00159 86 2.99e-05 CAGAAACGGC GAAGGGGG ATTTACC AFMBPDIA_01000 88 4.02e-05 TATGAAGCAA GAAGGGGA ACAGC AFMBPDIA_00325 85 4.02e-05 TCGAGATTGT GAAGGGGA CAGACGTC AFMBPDIA_00521 85 5.82e-05 AATGTGTAAA AAAGGGGG GCATGACC AFMBPDIA_01972 87 9.16e-05 AAGTATTTTA GGAGGAGA AACTGC AFMBPDIA_01909 56 9.16e-05 GCTTACAGAA AAAGGGGA TTATATAACC AFMBPDIA_01066 85 9.16e-05 TTGACTTAAC AAAGGGGA GAGCTCAA AFMBPDIA_01793 73 1.35e-04 TACAATCCTT AGAGGAGA AAAGAGCAAG AFMBPDIA_00813 40 1.35e-04 TTCTCTCTGA GAAGGAGG CTTTTTTACG AFMBPDIA_00223 85 1.35e-04 ACCCTAAATA GAAGGAGG CGCACAAA AFMBPDIA_00939 1 1.62e-04 . CAAGGGGA AGATGAGATA AFMBPDIA_00849 74 1.62e-04 CATTCCAGAT CAAGGGGA TTTAGAAAGA AFMBPDIA_01337 86 1.85e-04 TCTCATTTTT CGAGGAGG CTTACAC AFMBPDIA_01216 85 1.85e-04 TAAGTTAAGA AAAGGAGG AAATTGAG AFMBPDIA_00881 88 1.85e-04 TTGATAACAA AAAGGAGG ACGAC AFMBPDIA_00516 84 1.85e-04 TCCGACTTAA AAAGGAGG ATGATTCAA AFMBPDIA_01957 87 2.38e-04 ACCCTCGCGA AAAGGAGA GATTGT AFMBPDIA_01895 86 2.38e-04 TAATGACCGA AAAGGAGA TTTGTTT AFMBPDIA_01815 88 2.38e-04 AAAAGTGAAC GGAGGGGT TTCAA AFMBPDIA_01532 87 2.38e-04 ATTCAAAATA AAAGGAGA ACTGAA AFMBPDIA_00386 87 2.38e-04 TGCCAGCTAC AAAGGAGA CATGAG AFMBPDIA_00196 89 2.38e-04 AAACGGATAC GGAGGGGT TGGC AFMBPDIA_00905 90 2.47e-04 GTTTTCATTA GGAGGTGA AGC AFMBPDIA_00105 86 2.47e-04 ATTTGTTTCA GGAGGTGA TCATTTT AFMBPDIA_01128 87 2.74e-04 ATCGACAGCA CAAGGAGG AAGAAC AFMBPDIA_00235 86 2.74e-04 TAAACGTTAT CAAGGAGG TCGTCAT AFMBPDIA_00629 86 3.24e-04 TTCTAACAAT AGAGGTGA TGGGGTT AFMBPDIA_02003 89 4.23e-04 ATTTTAGTTT GGAGGGAA AATA AFMBPDIA_01920 87 4.23e-04 TTTTTCATAC AAAGGGGT ATCGGG AFMBPDIA_01311 89 4.23e-04 TATGAGAACT GGAGGGAA TCCG AFMBPDIA_01051 89 4.23e-04 GTGCAAGTGA GGAGGGAA ACAA AFMBPDIA_00801 91 4.23e-04 AAAACGCCAT AAAGGTGG CA AFMBPDIA_01404 88 4.78e-04 ATGAATAAAG AAAGGTGA TACAT AFMBPDIA_00449 88 4.78e-04 CGGTCAGTTT CGAGGTGA ATACA AFMBPDIA_00380 86 4.78e-04 AATATTAATC AGAGGGAG AATAGAA AFMBPDIA_01657 88 5.43e-04 TGTGCAATGC GGAGGGTA TTAAA AFMBPDIA_00258 72 5.43e-04 TAATATGGTA AGAGGAGT GAATGATGAG AFMBPDIA_00489 90 6.20e-04 CTTTTTTAAG GAAGGGAA AAT AFMBPDIA_00252 23 6.20e-04 TTTTCTATAA TAAGGGGA ATAGGCAGTT AFMBPDIA_00087 85 6.20e-04 TTTCAAGGAT TAAGGGGA AGCACGTC AFMBPDIA_01866 76 7.03e-04 ATAATCAGCT CAAGGTGA AAAAGGAGCG AFMBPDIA_00704 85 7.03e-04 TTGCCAAAAA TGAGGAGG ATCATAGA AFMBPDIA_00324 83 7.03e-04 ATTTCGATTT AAAGGGAG GCTATGTGAC AFMBPDIA_01651 85 8.38e-04 TTAGATCAAT AAAGGAGT GGGGCGAT AFMBPDIA_01231 34 8.38e-04 TAGATATAAT AAAGGGAA GATTCGCTAT AFMBPDIA_01118 66 8.38e-04 TGACCTAAGC GGAGGAAA AAAACCATTA AFMBPDIA_01682 36 8.96e-04 ATCGTAAAAT AAAGGGTG TTTTCAACCA AFMBPDIA_01078 89 8.96e-04 ACATAAGTTA GGAGGATG GGAA AFMBPDIA_00255 89 8.96e-04 TTAATAATCA GGAGGATG AATC AFMBPDIA_01070 21 1.03e-03 ACACGCAAAA AAAGGGTA AACTGATAGA AFMBPDIA_01878 88 1.16e-03 AGTTCTTTTT AGAGGTGT GTATG AFMBPDIA_01748 76 1.16e-03 CTAACATGTA AGAGGATG ATAGGAGGTT AFMBPDIA_01385 50 1.16e-03 TTAGATCAAT CAAGGAGT GAGTCGATAT AFMBPDIA_00644 84 1.43e-03 ATACTGACAG GAAGGATA GAAAAACAG AFMBPDIA_00540 29 1.43e-03 ATTTTTGTTA AAAGGAAA AACAGGACAT AFMBPDIA_00147 89 1.43e-03 TTCATAGAGA TGAGGGGT AGAG AFMBPDIA_02034 61 1.54e-03 CCACAATAAT AAAGGATG TGCGATTTTG AFMBPDIA_01401 7 1.54e-03 CATATG CGAGGTGT ATTCCGCCGC AFMBPDIA_01087 87 1.54e-03 AAACTGAAAT GGAGGTAA GTGGAT AFMBPDIA_00976 88 1.54e-03 GTTGCTTTCC TGAGGTGA TACAA AFMBPDIA_00825 85 1.54e-03 ACGGTTTCTA AAAGGATG ATTGAGAC AFMBPDIA_00475 82 1.54e-03 TTTTGCAGAA AAAGGATG GAGGCCATAA AFMBPDIA_00343 89 1.54e-03 ATTTTTTCCG GGAGGTAA AGAC AFMBPDIA_00338 86 1.54e-03 TATTGAGGAA TGAGGTGA AAAGGAG AFMBPDIA_01520 67 1.82e-03 AAATTTATCC CAAGGAAA ACTATTACAT AFMBPDIA_01448 85 1.82e-03 ATCAATAGAT GAAGGGAT GAAGACTT AFMBPDIA_00789 91 2.16e-03 ATCCTATATA CGAGGTAG AT AFMBPDIA_01181 88 2.27e-03 TATAAAAAAA GAAGGTTA TACAC AFMBPDIA_00676 19 2.27e-03 AAAGGAATAT AAAGGTAA AATAAAAACA AFMBPDIA_00648 87 2.70e-03 TAAAAAGAAA AGAGGATT AAATAT AFMBPDIA_00069 54 2.89e-03 CCTTACGATC AAAGGAAT TTTCATTCAT AFMBPDIA_01964 85 3.08e-03 ATTAAAACGG TAAGGAAG GTCTTAAA AFMBPDIA_01851 72 3.08e-03 GAAAAAATAA AAAGGATT ATGAAATGGA AFMBPDIA_01263 48 3.21e-03 GTTTGTACTG TAAGGAAA ATCATGCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AFMBPDIA_01152 8.6e-06 89_[+1]_3 AFMBPDIA_00760 8.6e-06 85_[+1]_7 AFMBPDIA_00604 1.4e-05 84_[+1]_8 AFMBPDIA_01223 3e-05 83_[+1]_9 AFMBPDIA_00388 3e-05 83_[+1]_9 AFMBPDIA_00159 3e-05 85_[+1]_7 AFMBPDIA_01000 4e-05 87_[+1]_5 AFMBPDIA_00325 4e-05 84_[+1]_8 AFMBPDIA_00521 5.8e-05 84_[+1]_8 AFMBPDIA_01972 9.2e-05 86_[+1]_6 AFMBPDIA_01909 9.2e-05 55_[+1]_37 AFMBPDIA_01066 9.2e-05 84_[+1]_8 AFMBPDIA_01793 0.00014 72_[+1]_20 AFMBPDIA_00813 0.00014 39_[+1]_53 AFMBPDIA_00223 0.00014 84_[+1]_8 AFMBPDIA_00939 0.00016 [+1]_92 AFMBPDIA_00849 0.00016 73_[+1]_19 AFMBPDIA_01337 0.00018 85_[+1]_7 AFMBPDIA_01216 0.00018 84_[+1]_8 AFMBPDIA_00881 0.00018 87_[+1]_5 AFMBPDIA_00516 0.00018 83_[+1]_9 AFMBPDIA_01957 0.00024 86_[+1]_6 AFMBPDIA_01895 0.00024 85_[+1]_7 AFMBPDIA_01815 0.00024 87_[+1]_5 AFMBPDIA_01532 0.00024 86_[+1]_6 AFMBPDIA_00386 0.00024 86_[+1]_6 AFMBPDIA_00196 0.00024 88_[+1]_4 AFMBPDIA_00905 0.00025 89_[+1]_3 AFMBPDIA_00105 0.00025 85_[+1]_7 AFMBPDIA_01128 0.00027 86_[+1]_6 AFMBPDIA_00235 0.00027 85_[+1]_7 AFMBPDIA_00629 0.00032 85_[+1]_7 AFMBPDIA_02003 0.00042 88_[+1]_4 AFMBPDIA_01920 0.00042 86_[+1]_6 AFMBPDIA_01311 0.00042 88_[+1]_4 AFMBPDIA_01051 0.00042 88_[+1]_4 AFMBPDIA_00801 0.00042 90_[+1]_2 AFMBPDIA_01404 0.00048 87_[+1]_5 AFMBPDIA_00449 0.00048 87_[+1]_5 AFMBPDIA_00380 0.00048 85_[+1]_7 AFMBPDIA_01657 0.00054 87_[+1]_5 AFMBPDIA_00258 0.00054 71_[+1]_21 AFMBPDIA_00489 0.00062 89_[+1]_3 AFMBPDIA_00252 0.00062 22_[+1]_70 AFMBPDIA_00087 0.00062 84_[+1]_8 AFMBPDIA_01866 0.0007 75_[+1]_17 AFMBPDIA_00704 0.0007 84_[+1]_8 AFMBPDIA_00324 0.0007 82_[+1]_10 AFMBPDIA_01651 0.00084 84_[+1]_8 AFMBPDIA_01231 0.00084 33_[+1]_59 AFMBPDIA_01118 0.00084 65_[+1]_27 AFMBPDIA_01682 0.0009 35_[+1]_57 AFMBPDIA_01078 0.0009 88_[+1]_4 AFMBPDIA_00255 0.0009 88_[+1]_4 AFMBPDIA_01070 0.001 20_[+1]_72 AFMBPDIA_01878 0.0012 87_[+1]_5 AFMBPDIA_01748 0.0012 75_[+1]_17 AFMBPDIA_01385 0.0012 49_[+1]_43 AFMBPDIA_00644 0.0014 83_[+1]_9 AFMBPDIA_00540 0.0014 28_[+1]_64 AFMBPDIA_00147 0.0014 88_[+1]_4 AFMBPDIA_02034 0.0015 60_[+1]_32 AFMBPDIA_01401 0.0015 6_[+1]_86 AFMBPDIA_01087 0.0015 86_[+1]_6 AFMBPDIA_00976 0.0015 87_[+1]_5 AFMBPDIA_00825 0.0015 84_[+1]_8 AFMBPDIA_00475 0.0015 81_[+1]_11 AFMBPDIA_00343 0.0015 88_[+1]_4 AFMBPDIA_00338 0.0015 85_[+1]_7 AFMBPDIA_01520 0.0018 66_[+1]_26 AFMBPDIA_01448 0.0018 84_[+1]_8 AFMBPDIA_00789 0.0022 90_[+1]_2 AFMBPDIA_01181 0.0023 87_[+1]_5 AFMBPDIA_00676 0.0023 18_[+1]_74 AFMBPDIA_00648 0.0027 86_[+1]_6 AFMBPDIA_00069 0.0029 53_[+1]_39 AFMBPDIA_01964 0.0031 84_[+1]_8 AFMBPDIA_01851 0.0031 71_[+1]_21 AFMBPDIA_01263 0.0032 47_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRAGGRGR width=8 seqs=79 AFMBPDIA_01152 ( 90) GGAGGGGA 1 AFMBPDIA_00760 ( 86) GGAGGGGA 1 AFMBPDIA_00604 ( 85) AGAGGGGG 1 AFMBPDIA_01223 ( 84) AGAGGGGA 1 AFMBPDIA_00388 ( 84) AGAGGGGA 1 AFMBPDIA_00159 ( 86) GAAGGGGG 1 AFMBPDIA_01000 ( 88) GAAGGGGA 1 AFMBPDIA_00325 ( 85) GAAGGGGA 1 AFMBPDIA_00521 ( 85) AAAGGGGG 1 AFMBPDIA_01972 ( 87) GGAGGAGA 1 AFMBPDIA_01909 ( 56) AAAGGGGA 1 AFMBPDIA_01066 ( 85) AAAGGGGA 1 AFMBPDIA_01793 ( 73) AGAGGAGA 1 AFMBPDIA_00813 ( 40) GAAGGAGG 1 AFMBPDIA_00223 ( 85) GAAGGAGG 1 AFMBPDIA_00939 ( 1) CAAGGGGA 1 AFMBPDIA_00849 ( 74) CAAGGGGA 1 AFMBPDIA_01337 ( 86) CGAGGAGG 1 AFMBPDIA_01216 ( 85) AAAGGAGG 1 AFMBPDIA_00881 ( 88) AAAGGAGG 1 AFMBPDIA_00516 ( 84) AAAGGAGG 1 AFMBPDIA_01957 ( 87) AAAGGAGA 1 AFMBPDIA_01895 ( 86) AAAGGAGA 1 AFMBPDIA_01815 ( 88) GGAGGGGT 1 AFMBPDIA_01532 ( 87) AAAGGAGA 1 AFMBPDIA_00386 ( 87) AAAGGAGA 1 AFMBPDIA_00196 ( 89) GGAGGGGT 1 AFMBPDIA_00905 ( 90) GGAGGTGA 1 AFMBPDIA_00105 ( 86) GGAGGTGA 1 AFMBPDIA_01128 ( 87) CAAGGAGG 1 AFMBPDIA_00235 ( 86) CAAGGAGG 1 AFMBPDIA_00629 ( 86) AGAGGTGA 1 AFMBPDIA_02003 ( 89) GGAGGGAA 1 AFMBPDIA_01920 ( 87) AAAGGGGT 1 AFMBPDIA_01311 ( 89) GGAGGGAA 1 AFMBPDIA_01051 ( 89) GGAGGGAA 1 AFMBPDIA_00801 ( 91) AAAGGTGG 1 AFMBPDIA_01404 ( 88) AAAGGTGA 1 AFMBPDIA_00449 ( 88) CGAGGTGA 1 AFMBPDIA_00380 ( 86) AGAGGGAG 1 AFMBPDIA_01657 ( 88) GGAGGGTA 1 AFMBPDIA_00258 ( 72) AGAGGAGT 1 AFMBPDIA_00489 ( 90) GAAGGGAA 1 AFMBPDIA_00252 ( 23) TAAGGGGA 1 AFMBPDIA_00087 ( 85) TAAGGGGA 1 AFMBPDIA_01866 ( 76) CAAGGTGA 1 AFMBPDIA_00704 ( 85) TGAGGAGG 1 AFMBPDIA_00324 ( 83) AAAGGGAG 1 AFMBPDIA_01651 ( 85) AAAGGAGT 1 AFMBPDIA_01231 ( 34) AAAGGGAA 1 AFMBPDIA_01118 ( 66) GGAGGAAA 1 AFMBPDIA_01682 ( 36) AAAGGGTG 1 AFMBPDIA_01078 ( 89) GGAGGATG 1 AFMBPDIA_00255 ( 89) GGAGGATG 1 AFMBPDIA_01070 ( 21) AAAGGGTA 1 AFMBPDIA_01878 ( 88) AGAGGTGT 1 AFMBPDIA_01748 ( 76) AGAGGATG 1 AFMBPDIA_01385 ( 50) CAAGGAGT 1 AFMBPDIA_00644 ( 84) GAAGGATA 1 AFMBPDIA_00540 ( 29) AAAGGAAA 1 AFMBPDIA_00147 ( 89) TGAGGGGT 1 AFMBPDIA_02034 ( 61) AAAGGATG 1 AFMBPDIA_01401 ( 7) CGAGGTGT 1 AFMBPDIA_01087 ( 87) GGAGGTAA 1 AFMBPDIA_00976 ( 88) TGAGGTGA 1 AFMBPDIA_00825 ( 85) AAAGGATG 1 AFMBPDIA_00475 ( 82) AAAGGATG 1 AFMBPDIA_00343 ( 89) GGAGGTAA 1 AFMBPDIA_00338 ( 86) TGAGGTGA 1 AFMBPDIA_01520 ( 67) CAAGGAAA 1 AFMBPDIA_01448 ( 85) GAAGGGAT 1 AFMBPDIA_00789 ( 91) CGAGGTAG 1 AFMBPDIA_01181 ( 88) GAAGGTTA 1 AFMBPDIA_00676 ( 19) AAAGGTAA 1 AFMBPDIA_00648 ( 87) AGAGGATT 1 AFMBPDIA_00069 ( 54) AAAGGAAT 1 AFMBPDIA_01964 ( 85) TAAGGAAG 1 AFMBPDIA_01851 ( 72) AAAGGATT 1 AFMBPDIA_01263 ( 48) TAAGGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9300 bayes= 8.34063 E= 2.0e-014 35 -3 74 -166 71 -1295 119 -1295 152 -1295 -1295 -1295 -1295 -1295 240 -1295 -1295 -1295 240 -1295 26 -1295 100 -66 -61 -1295 168 -96 61 -1295 68 -96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 2.0e-014 0.443038 0.139241 0.316456 0.101266 0.569620 0.000000 0.430380 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.417722 0.000000 0.379747 0.202532 0.227848 0.000000 0.607595 0.164557 0.531646 0.000000 0.303797 0.164557 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGGRGR MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AG]AGG[AGT][GA][AG] -------------------------------------------------------------------------------- Time 5.74 secs. ******************************************************************************** ******************************************************************************** MOTIF MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 width = 27 sites = 18 llr = 236 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 32:::::33144:::1::234436721 pos.-specific C 42::122213522:12241:25:::39 probability G 23:1::1222::1:3112121:42:1: matrix T 13a9987344137a6674754132341 bits 2.8 2.5 2.3 2.0 * Relative 1.7 * * * Entropy 1.4 *** * * (18.9 bits) 1.1 **** * * 0.8 ***** * *** ** * * 0.6 * ***** * ****** * * * 0.3 * ***** *********** ****** 0.0 --------------------------- Multilevel CGTTTTTATTCATTTTTTTTACGAATC consensus AT CTACAT GCCCAATAATTC sequence A CG C G T A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------------- AFMBPDIA_01263 8 3.49e-11 GAACAAA CGTTTCTGTCAATTGTTTTTTCGAACC TATGTTTGTA AFMBPDIA_00629 24 1.06e-08 TTTAGAAAAA CTTTTTTTGGACTTGCTGTTCCGTTCC CCGGCTATTA AFMBPDIA_01599 34 1.86e-08 TTTTATGAAA CTTTTTGCTTCTTTTTGTTTACGAAAC TATTTGCTTA AFMBPDIA_01311 40 3.59e-08 CTTTTATTGT CATTTTTCTGCTTTTTTCTACATTTTC TTATCCTCTT AFMBPDIA_00786 44 7.47e-08 ACAAGCGTCA GGTTTTTTCTCTTTGTTTTTTATATAC TATTATCAAA AFMBPDIA_01128 15 8.39e-08 TTCATCGTTT ACTTTTTAGCCCCTGCTCTTTTGAAGC AGGGTTTTTA AFMBPDIA_01793 32 1.05e-07 ATTATTCATC AATTTTTCACCCTTTTTCATAAAGTTC GTGATACAAT AFMBPDIA_00375 35 2.01e-07 TTTTTAATTC CTTTTTTTTTCATTTTTCAATCGATTA TGATAAGATA AFMBPDIA_00789 57 3.02e-07 TATATGTAAG GGTTTTCATTATTTTTTTATAAAAATC CTATATACGA AFMBPDIA_01851 25 4.03e-07 AAATTCGAAA CATTTTCCATCAGTGGCGTATAAAACC ATCACGCTTG AFMBPDIA_01152 13 7.60e-07 AAACTGATCA CCTTTCTATTTATTTTTTCGACAAAAC ATGATATAGT AFMBPDIA_00697 5 9.01e-07 AAGT TATTTTTGATACTTTTTTTATCATAAC TTTATTTTGA AFMBPDIA_00105 31 1.36e-06 ATCAAGAGTG TTTTTTTAGCTTTTTTCTTGACTGTTC AGTCTGGAAA AFMBPDIA_00394 19 1.59e-06 CCTTTATTTA AGTTTTCTTCAACTTCCCGGGATAACC CAGCCAATTT AFMBPDIA_01748 31 2.49e-06 AAACAGCAAA CGTGCTTAAACATTTGTCAAACGTATC TGAATTAGCT AFMBPDIA_00939 37 2.88e-06 TCATCTTGAA ACTTTTTGAAAAGTCCGCTGTCTAACC GAATGAGGCC AFMBPDIA_00258 25 3.31e-06 TCCCGCATGC GGTTTCTGCTCACTTTCTTTCAGGAGT GAAAATCGAG AFMBPDIA_01216 3 4.34e-06 AA ATTTCTCTGGATTTGATGTTAAGAATC CTTACATCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AFMBPDIA_01263 3.5e-11 7_[+2]_66 AFMBPDIA_00629 1.1e-08 23_[+2]_50 AFMBPDIA_01599 1.9e-08 33_[+2]_40 AFMBPDIA_01311 3.6e-08 39_[+2]_34 AFMBPDIA_00786 7.5e-08 43_[+2]_30 AFMBPDIA_01128 8.4e-08 14_[+2]_59 AFMBPDIA_01793 1.1e-07 31_[+2]_42 AFMBPDIA_00375 2e-07 34_[+2]_39 AFMBPDIA_00789 3e-07 56_[+2]_17 AFMBPDIA_01851 4e-07 24_[+2]_49 AFMBPDIA_01152 7.6e-07 12_[+2]_61 AFMBPDIA_00697 9e-07 4_[+2]_69 AFMBPDIA_00105 1.4e-06 30_[+2]_43 AFMBPDIA_00394 1.6e-06 18_[+2]_55 AFMBPDIA_01748 2.5e-06 30_[+2]_43 AFMBPDIA_00939 2.9e-06 36_[+2]_37 AFMBPDIA_00258 3.3e-06 24_[+2]_49 AFMBPDIA_01216 4.3e-06 2_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MNTTTTTNDYMWTTKTTYTWWMDAWHC width=27 seqs=18 AFMBPDIA_01263 ( 8) CGTTTCTGTCAATTGTTTTTTCGAACC 1 AFMBPDIA_00629 ( 24) CTTTTTTTGGACTTGCTGTTCCGTTCC 1 AFMBPDIA_01599 ( 34) CTTTTTGCTTCTTTTTGTTTACGAAAC 1 AFMBPDIA_01311 ( 40) CATTTTTCTGCTTTTTTCTACATTTTC 1 AFMBPDIA_00786 ( 44) GGTTTTTTCTCTTTGTTTTTTATATAC 1 AFMBPDIA_01128 ( 15) ACTTTTTAGCCCCTGCTCTTTTGAAGC 1 AFMBPDIA_01793 ( 32) AATTTTTCACCCTTTTTCATAAAGTTC 1 AFMBPDIA_00375 ( 35) CTTTTTTTTTCATTTTTCAATCGATTA 1 AFMBPDIA_00789 ( 57) GGTTTTCATTATTTTTTTATAAAAATC 1 AFMBPDIA_01851 ( 25) CATTTTCCATCAGTGGCGTATAAAACC 1 AFMBPDIA_01152 ( 13) CCTTTCTATTTATTTTTTCGACAAAAC 1 AFMBPDIA_00697 ( 5) TATTTTTGATACTTTTTTTATCATAAC 1 AFMBPDIA_00105 ( 31) TTTTTTTAGCTTTTTTCTTGACTGTTC 1 AFMBPDIA_00394 ( 19) AGTTTTCTTCAACTTCCCGGGATAACC 1 AFMBPDIA_01748 ( 31) CGTGCTTAAACATTTGTCAAACGTATC 1 AFMBPDIA_00939 ( 37) ACTTTTTGAAAAGTCCGCTGTCTAACC 1 AFMBPDIA_00258 ( 25) GGTTTCTGCTCACTTTCTTTCAGGAGT 1 AFMBPDIA_01216 ( 3) ATTTCTCTGGATTTGATGTTAAGAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 7400 bayes= 9.52943 E= 1.0e-002 -33 164 -18 -152 -65 23 82 -20 -1081 -1081 -1081 164 -1081 -1081 -177 156 -1081 -36 -1081 147 -1081 23 -1081 138 -1081 64 -177 117 -33 64 23 -20 -33 -36 23 28 -165 97 -18 47 16 181 -1081 -152 35 64 -1081 6 -1081 23 -77 117 -1081 -1081 -1081 164 -1081 -135 82 93 -265 64 -77 93 -1081 64 -77 106 -1081 145 -18 47 -65 -135 -177 106 -33 -1081 23 64 16 23 -177 28 35 181 -1081 -252 -33 -1081 123 -20 81 -1081 -18 -53 93 -1081 -1081 6 -65 97 -77 28 -265 264 -1081 -252 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 18 E= 1.0e-002 0.277778 0.444444 0.166667 0.111111 0.222222 0.166667 0.333333 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.111111 0.000000 0.888889 0.000000 0.166667 0.000000 0.833333 0.000000 0.222222 0.055556 0.722222 0.277778 0.222222 0.222222 0.277778 0.277778 0.111111 0.222222 0.388889 0.111111 0.277778 0.166667 0.444444 0.388889 0.500000 0.000000 0.111111 0.444444 0.222222 0.000000 0.333333 0.000000 0.166667 0.111111 0.722222 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.333333 0.611111 0.055556 0.222222 0.111111 0.611111 0.000000 0.222222 0.111111 0.666667 0.000000 0.388889 0.166667 0.444444 0.222222 0.055556 0.055556 0.666667 0.277778 0.000000 0.222222 0.500000 0.388889 0.166667 0.055556 0.388889 0.444444 0.500000 0.000000 0.055556 0.277778 0.000000 0.444444 0.277778 0.611111 0.000000 0.166667 0.222222 0.666667 0.000000 0.000000 0.333333 0.222222 0.277778 0.111111 0.388889 0.055556 0.888889 0.000000 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MNTTTTTNDYMWTTKTTYTWWMDAWHC MEME-2 regular expression -------------------------------------------------------------------------------- [CA][GTA]TTTT[TC][ATCG][TAG][TC][CA][ATC]TT[TG][TC][TC][TC][TA][TAG][AT][CA][GAT][AT][AT][TCA]C -------------------------------------------------------------------------------- Time 10.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TSCHTTYC MEME-3 width = 8 sites = 14 llr = 131 E-value = 8.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C 26a4::4a probability G :4:::::: matrix T 8::3aa6: bits 2.8 * * 2.5 * * 2.3 * * 2.0 * * Relative 1.7 ** ** * Entropy 1.4 ** ** * (13.5 bits) 1.1 *** **** 0.8 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TCCCTTTC consensus CG A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- AFMBPDIA_01815 11 1.89e-06 TAATATAAAT TCCCTTCC AAATTCCAGT AFMBPDIA_00394 62 1.89e-06 ATTTCATCTG TCCCTTCC GCATATAAAA AFMBPDIA_00252 1 1.89e-06 . TCCCTTCC TCCCTTTTCT AFMBPDIA_01532 8 6.99e-06 GATGATC TCCCTTTC TAAAATAAAA AFMBPDIA_00386 1 1.14e-05 . CCCCTTTC CTTTCGTTAC AFMBPDIA_01957 22 3.86e-05 TAGTGTATAA TCCTTTTC CAGTATGATA AFMBPDIA_00380 7 3.86e-05 CCCCTA TCCTTTTC TGTTATTATA AFMBPDIA_01360 20 5.12e-05 AAAAAATCAA TCCATTTC AATATTTTTT AFMBPDIA_00516 25 5.12e-05 AAAGTGTACC TCCATTTC CTTATAATAA AFMBPDIA_01363 9 5.37e-05 AATGAAGC CGCCTTTC TTGTTAAAAT AFMBPDIA_00976 80 5.93e-05 TCATGTTTGT TGCTTTCC TGAGGTGATA AFMBPDIA_01057 31 6.55e-05 AAACAATCGT TGCATTCC AATCTATGAA AFMBPDIA_01674 40 8.98e-05 AAAATGATTC TGCTTTTC AATAAAATCT AFMBPDIA_00849 62 1.06e-04 TTGTATGAAA CGCATTCC AGATCAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AFMBPDIA_01815 1.9e-06 10_[+3]_82 AFMBPDIA_00394 1.9e-06 61_[+3]_31 AFMBPDIA_00252 1.9e-06 [+3]_92 AFMBPDIA_01532 7e-06 7_[+3]_85 AFMBPDIA_00386 1.1e-05 [+3]_92 AFMBPDIA_01957 3.9e-05 21_[+3]_71 AFMBPDIA_00380 3.9e-05 6_[+3]_86 AFMBPDIA_01360 5.1e-05 19_[+3]_73 AFMBPDIA_00516 5.1e-05 24_[+3]_68 AFMBPDIA_01363 5.4e-05 8_[+3]_84 AFMBPDIA_00976 5.9e-05 79_[+3]_13 AFMBPDIA_01057 6.6e-05 30_[+3]_62 AFMBPDIA_01674 9e-05 39_[+3]_53 AFMBPDIA_00849 0.00011 61_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSCHTTYC width=8 seqs=14 AFMBPDIA_01815 ( 11) TCCCTTCC 1 AFMBPDIA_00394 ( 62) TCCCTTCC 1 AFMBPDIA_00252 ( 1) TCCCTTCC 1 AFMBPDIA_01532 ( 8) TCCCTTTC 1 AFMBPDIA_00386 ( 1) CCCCTTTC 1 AFMBPDIA_01957 ( 22) TCCTTTTC 1 AFMBPDIA_00380 ( 7) TCCTTTTC 1 AFMBPDIA_01360 ( 20) TCCATTTC 1 AFMBPDIA_00516 ( 25) TCCATTTC 1 AFMBPDIA_01363 ( 9) CGCCTTTC 1 AFMBPDIA_00976 ( 80) TGCTTTCC 1 AFMBPDIA_01057 ( 31) TGCATTCC 1 AFMBPDIA_01674 ( 40) TGCTTTTC 1 AFMBPDIA_00849 ( 62) CGCATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 9300 bayes= 11.0448 E= 8.0e+000 -1045 59 -1045 130 -1045 218 92 -1045 -1045 281 -1045 -1045 -29 159 -1045 -16 -1045 -1045 -1045 164 -1045 -1045 -1045 164 -1045 159 -1045 84 -1045 281 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.0e+000 0.000000 0.214286 0.000000 0.785714 0.000000 0.642857 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.428571 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSCHTTYC MEME-3 regular expression -------------------------------------------------------------------------------- [TC][CG]C[CAT]TT[TC]C -------------------------------------------------------------------------------- Time 15.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- AFMBPDIA_00069 5.87e-03 58_[+2(2.85e-05)]_15 AFMBPDIA_00087 2.75e-01 100 AFMBPDIA_00105 1.62e-04 30_[+2(1.36e-06)]_43 AFMBPDIA_00142 2.88e-01 100 AFMBPDIA_00147 2.99e-01 100 AFMBPDIA_00159 3.42e-03 85_[+1(2.99e-05)]_7 AFMBPDIA_00196 8.83e-02 100 AFMBPDIA_00223 6.06e-02 100 AFMBPDIA_00235 2.77e-01 100 AFMBPDIA_00252 4.74e-04 [+3(1.89e-06)]_1_[+3(6.98e-05)]_83 AFMBPDIA_00255 5.73e-02 100 AFMBPDIA_00258 6.23e-05 24_[+2(3.31e-06)]_49 AFMBPDIA_00324 1.70e-01 100 AFMBPDIA_00325 1.46e-02 84_[+1(4.02e-05)]_8 AFMBPDIA_00338 6.88e-02 100 AFMBPDIA_00343 1.74e-01 100 AFMBPDIA_00375 1.85e-04 34_[+2(2.01e-07)]_39 AFMBPDIA_00380 1.67e-03 6_[+3(3.86e-05)]_86 AFMBPDIA_00386 1.40e-03 [+3(1.14e-05)]_92 AFMBPDIA_00388 1.36e-02 83_[+1(2.99e-05)]_9 AFMBPDIA_00394 3.61e-06 18_[+2(1.59e-06)]_16_[+3(1.89e-06)]_\ 31 AFMBPDIA_00449 1.66e-01 100 AFMBPDIA_00475 5.27e-01 100 AFMBPDIA_00489 2.72e-01 100 AFMBPDIA_00516 2.54e-04 24_[+3(5.12e-05)]_68 AFMBPDIA_00521 4.48e-02 84_[+1(5.82e-05)]_8 AFMBPDIA_00540 2.04e-01 100 AFMBPDIA_00604 1.64e-03 84_[+1(1.41e-05)]_8 AFMBPDIA_00629 7.90e-08 23_[+2(1.06e-08)]_50 AFMBPDIA_00638 1.21e-01 100 AFMBPDIA_00644 4.14e-01 100 AFMBPDIA_00648 1.49e-01 100 AFMBPDIA_00676 7.40e-01 100 AFMBPDIA_00697 1.56e-03 4_[+2(9.01e-07)]_69 AFMBPDIA_00704 1.36e-01 100 AFMBPDIA_00760 6.87e-03 85_[+1(8.56e-06)]_7 AFMBPDIA_00768 7.97e-01 100 AFMBPDIA_00786 1.50e-04 43_[+2(7.47e-08)]_30 AFMBPDIA_00789 3.01e-04 56_[+2(3.02e-07)]_17 AFMBPDIA_00801 1.74e-01 100 AFMBPDIA_00813 1.65e-02 100 AFMBPDIA_00825 1.93e-01 100 AFMBPDIA_00834 4.95e-01 100 AFMBPDIA_00849 6.10e-03 100 AFMBPDIA_00881 2.07e-01 100 AFMBPDIA_00905 6.25e-02 100 AFMBPDIA_00939 1.52e-04 36_[+2(2.88e-06)]_37 AFMBPDIA_00976 3.11e-03 79_[+3(5.93e-05)]_13 AFMBPDIA_01000 2.52e-02 87_[+1(4.02e-05)]_5 AFMBPDIA_01036 2.69e-01 100 AFMBPDIA_01051 1.70e-02 100 AFMBPDIA_01057 6.76e-02 30_[+3(6.55e-05)]_62 AFMBPDIA_01066 4.19e-02 84_[+1(9.16e-05)]_8 AFMBPDIA_01070 2.14e-01 100 AFMBPDIA_01078 3.42e-01 100 AFMBPDIA_01087 3.37e-01 100 AFMBPDIA_01118 3.48e-01 100 AFMBPDIA_01128 8.48e-06 14_[+2(8.39e-08)]_59 AFMBPDIA_01152 4.35e-07 12_[+2(7.60e-07)]_50_[+1(8.56e-06)]_\ 3 AFMBPDIA_01181 2.18e-01 100 AFMBPDIA_01216 2.59e-04 2_[+2(4.34e-06)]_71 AFMBPDIA_01223 3.43e-02 83_[+1(2.99e-05)]_9 AFMBPDIA_01231 2.26e-01 100 AFMBPDIA_01263 1.45e-07 7_[+2(3.49e-11)]_66 AFMBPDIA_01311 3.42e-06 39_[+2(3.59e-08)]_34 AFMBPDIA_01326 4.27e-01 100 AFMBPDIA_01331 8.51e-01 100 AFMBPDIA_01337 8.99e-02 100 AFMBPDIA_01360 1.36e-02 19_[+3(5.12e-05)]_73 AFMBPDIA_01363 5.00e-02 8_[+3(5.37e-05)]_84 AFMBPDIA_01374 2.46e-01 100 AFMBPDIA_01385 3.51e-01 100 AFMBPDIA_01401 1.15e-01 100 AFMBPDIA_01404 1.33e-01 100 AFMBPDIA_01448 5.57e-01 100 AFMBPDIA_01520 3.68e-01 100 AFMBPDIA_01532 9.84e-04 7_[+3(6.99e-06)]_85 AFMBPDIA_01599 9.14e-05 33_[+2(1.86e-08)]_40 AFMBPDIA_01651 2.18e-01 100 AFMBPDIA_01657 1.95e-01 100 AFMBPDIA_01674 6.41e-02 39_[+3(8.98e-05)]_53 AFMBPDIA_01682 4.76e-01 100 AFMBPDIA_01714 5.63e-01 100 AFMBPDIA_01748 1.26e-03 30_[+2(2.49e-06)]_43 AFMBPDIA_01793 2.95e-06 31_[+2(1.05e-07)]_42 AFMBPDIA_01815 8.90e-05 10_[+3(1.89e-06)]_82 AFMBPDIA_01826 6.99e-01 100 AFMBPDIA_01851 3.98e-04 24_[+2(4.03e-07)]_49 AFMBPDIA_01866 7.18e-02 100 AFMBPDIA_01878 3.42e-01 100 AFMBPDIA_01895 3.56e-02 100 AFMBPDIA_01909 1.22e-03 55_[+1(9.16e-05)]_37 AFMBPDIA_01920 3.02e-01 100 AFMBPDIA_01935 6.25e-01 100 AFMBPDIA_01957 2.34e-04 21_[+3(3.86e-05)]_71 AFMBPDIA_01964 1.07e-01 100 AFMBPDIA_01972 1.71e-02 86_[+1(9.16e-05)]_6 AFMBPDIA_01999 5.89e-02 100 AFMBPDIA_02003 2.16e-02 100 AFMBPDIA_02034 3.43e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************