RID: G11956NY016 Job Title:RNA-directed RNA polymerase nsp12 Program: BLASTP Query: RNA-directed RNA polymerase nsp12 ID: lcl|Query_76910(amino acid) Length: 934 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 1973 1973 100% 0.0 100.00 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 1120 1120 100% 0.0 57.97 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rat coronavi... NA 33740 502 502 32% 5e-171 76.22 307 Q9WQ77.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Turkey coron... NA 231430 452 452 32% 9e-152 69.06 306 Q9WQ76.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Berne virus NA 11156 122 122 56% 1e-26 24.26 6857 P0C6V7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Breda virus ... NA 360393 109 109 40% 7e-23 27.34 6733 P0C6V8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 84.3 135 76% 4e-15 23.16 6872 Q008X6.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 4468 to 5401 Score:1973 bits(5112), Expect:0.0, Method:Compositional matrix adjust., Identities:934/934(100%), Positives:934/934(100%), Gaps:0/934(0%) Query 1 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 61 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 120 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 180 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 181 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 241 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC 300 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC 4767 Query 301 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD 360 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD Sbjct 4768 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD 4827 Query 361 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD Sbjct 4828 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4887 Query 421 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR 480 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR Sbjct 4888 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR 4947 Query 481 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT 540 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT Sbjct 4948 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT 5007 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW 600 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW Sbjct 5008 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW 5067 Query 601 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE 660 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE Sbjct 5068 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE 5127 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE 720 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE Sbjct 5128 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE 5187 Query 721 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS 780 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS Sbjct 5188 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS 5247 Query 781 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL 840 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL Sbjct 5248 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL 5307 Query 841 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH 900 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH Sbjct 5308 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH 5367 Query 901 MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 934 MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ Sbjct 5368 MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4044 to 4970 Score:1120 bits(2897), Expect:0.0, Method:Compositional matrix adjust., Identities:542/935(58%), Positives:687/935(73%), Gaps:9/935(0%) Query 1 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 60 S D ++LNR RGS AR+EPC +G D RAFDI Y V+ +GK K N RF Sbjct 4044 SVDISYLNRARGSSA-ARLEPC-NGTDIDKCVRAFDI--YNKNVSFLGKCLKMNCVRFKN 4099 Query 61 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 120 D + D +FV+KR T E E+ Y+L+ A+A HDFF + +V ++ R Sbjct 4100 ADLK----DGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHN 4155 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 180 LT+YTMMDLVYA+R+FD+ NC+VLK +LV GCCD SYFD+K W+D VEN ++ VY L Sbjct 4156 LTKYTMMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASL 4215 Query 181 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G+ + +A+L V CD MV G+VGVLTLDNQDLNG +YDFGDFV++ P GV SYY Sbjct 4216 GKIVARAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYY 4275 Query 241 SYLMPVLSMTNCLAAETHRDCDL-TKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPN 299 SY+MP++ +TNCLA+E D+ + LL+YD+T++K LF KYFK W YHPN Sbjct 4276 SYMMPIMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPN 4335 Query 300 CVNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNM 359 C +C DD CV+HCANFN LF+ T+PGT+FGP+ RK+F+DGVP V + GYH+K+LGLV N Sbjct 4336 CSDCYDDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNK 4395 Query 360 DVSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 419 DV+ H RL++ EL+ + DP++ IAS+ AL D RT CFSVAAL+TGLT Q V+PG+FN+ Sbjct 4396 DVNTHSVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNE 4455 Query 420 DFYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVD 479 +FY+F+ +GFF EGS +TL+HFFFAQ+G AA+ D+ +Y YN PT+ DI Q ++V Sbjct 4456 EFYNFLRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVS 4515 Query 480 RYFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLP 539 RYF+IY+GGC+ A EV+V NL+KSAG P NKFGKA +YYES+SY+EQD LFA+TKRNVLP Sbjct 4516 RYFDIYEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLP 4575 Query 540 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGG 599 T+TQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TR +T VIGTTKFYGG Sbjct 4576 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGG 4635 Query 600 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLAN 659 W+ ML+TL V+NP LMGWDYPKCDRA+PNM R+ ++++L KH CCT TDRFYRL N Sbjct 4636 WNNMLRTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGN 4695 Query 660 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVD 719 E AQVL+E V GG+Y KPGGT+SGDA+TAYANS+FNI QA ++N++ L+ ++ + Sbjct 4696 ELAQVLTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNN 4755 Query 720 EEVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIA 779 V+D+Q LY N YR + + F+D YY +L KHFSMMILSDDGVVCYN DYA GYIA Sbjct 4756 VNVRDLQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIA 4815 Query 780 SIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRI 839 I FK TLYYQNNVFMS +KCWVE DL KGPHEFCSQHT+ I D D Y+LPYPDPSRI Sbjct 4816 DISAFKATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRI 4875 Query 840 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTG 899 LSAG FVDD+VKTD +++ER+VSLAIDAYPL+KH + EY+ VF+V L +++ L K+L Sbjct 4876 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNE 4935 Query 900 HMLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 934 +L+S+SV L + KFW E FY +Y T LQ Sbjct 4936 GVLESFSVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Rat coronavirus (strain 681)] Sequence ID: Q9WQ77.1 Length: 307 Range 1: 1 to 307 Score:502 bits(1292), Expect:5e-171, Method:Compositional matrix adjust., Identities:234/307(76%), Positives:268/307(87%), Gaps:0/307(0%) Query 508 FNKFGKARVYYESLSYQEQDELFAMTKRNVLPTITQMNLKYAISAKNRARTVAGVSILST 567 FNKFGKAR+YYE+LS++EQDE++A TKRNVLPT+TQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 568 MTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRA 627 MT R +HQK LKS+AATRG VIGTTKFYGGWD ML+ L KDVD+P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 628 MPNMCRIFASLILARKHSTCCTNTDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDA 687 MPN+ RI +SL+LARKH +CC++TDRFYRLANECAQVLSE V+CGG YYVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 688 TTAYANSVFNILQATTANVSALMGANGNTIVDEEVKDMQFELYVNVYRKSQPDPKFVDRY 747 TTA+ANSVFNI QA +ANV +LM NG+ I D ++++Q LY NVYR DP FV Y Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 748 YAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQNFKETLYYQNNVFMSEAKCWVETDL 807 Y FLNKHFSMMILSDDGVVCYNS++A+KGYIA+I F++ LYYQNNVFMSEAKCWVETD+ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 808 KKGPHEF 814 +KGPHEF Sbjct 301 EKGPHEF 307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Turkey coronavirus (strain Minnesota)] Sequence ID: Q9WQ76.1 Length: 306 Range 1: 1 to 306 Score:452 bits(1164), Expect:9e-152, Method:Compositional matrix adjust., Identities:212/307(69%), Positives:257/307(83%), Gaps:1/307(0%) Query 508 FNKFGKARVYYESLSYQEQDELFAMTKRNVLPTITQMNLKYAISAKNRARTVAGVSILST 567 FNKFGKAR+YYE +S +EQD+LF TK+NVLPTITQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 568 MTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRA 627 MTNRQ+HQK+LKS+ TR + VIGTTKFYGGWD ML+ L + V++P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 628 MPNMCRIFASLILARKHSTCCTNTDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDA 687 MPN+ RI ASL+LARKH+ CCT ++R YRL NECAQVLSE VL GG YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 688 TTAYANSVFNILQATTANVSALMGANGNTIVDEEVKDMQFELYVNVYRKSQPDPKFVDRY 747 TTAYANSVFNI+QAT+ANV+ L+ IV +++K +Q+ELY VYR+ DP FV+++ Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 748 YAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQNFKETLYYQNNVFMSEAKCWVETDL 807 Y++L K+FS+MI +DDGVVCYN+ A +G +A I F+E LYYQNNV+M+++KCWVE DL Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 808 KKGPHEF 814 +KGPHEF Sbjct 300 EKGPHEF 306 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 4883 to 5383 Score:122 bits(305), Expect:1e-26, Method:Compositional matrix adjust., Identities:131/540(24%), Positives:219/540(40%), Gaps:47/540(8%) Query 395 TPCFSVAALTTGLTFQTVRPGNFNKDFYDFVVSKGFFKEGSSV--TLRHFFFAQDGHAAI 452 TP SV + FYD + + G ++F++ + A+ Sbjct 4883 TPAISVGEGVYAANVPSASATKQKIPFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGAL 4942 Query 453 TDYSYYAYNLPTMCDIKQMLFCMEVVDRYFEIYDGGCLNASEVIVNNLDKSAGHPFNKFG 512 D YY Y K + + + R E Y +N + + N G Sbjct 4943 ADVCYYDYQGTGFYSPKLLAGVYDFMKRVTECYR---INERFTYEQAKPRKSSMGINITG 4999 Query 513 -KARVYYESLSYQEQDELFAMTKRNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNR 571 + Y +L + LF ++ LP T++ K+A+SAK RARTV+ S +++ R Sbjct 5000 YQQDAVYRALGPENIARLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFR 5059 Query 572 QYHQKMLKSM---AATRGSTCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAM 628 H+ + M A G C+IG +K+ + LK Y ++ + G DY KCDR Sbjct 5060 FAHKPVTSKMVEVAQNSGGFCLIGVSKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTF 5119 Query 629 PNMCRIFASLILARKHSTCCTNTDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDAT 688 P R + +L ++ + NE + + +LC G KPGGTSSGDAT Sbjct 5120 PLSFRALTAALLYELGEW----DEKSWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDAT 5175 Query 689 TAYANSVFNILQATTANVSALMG--ANGNTIVDEEVKDMQFELYVNVYRKSQPDPKFVDR 746 TA++N+ +N + ++ + GN ++ + V+ D +F Sbjct 5176 TAHSNTFYNYMVHYVVAFKTILSDLSEGNKVMRIAAHNAYTTGDYQVFNTLLED-QFQTN 5234 Query 747 YYAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQNFKETLYYQNNVFMSEAKCWVETD 806 Y FLN LSDD + ++ A K I + +NF L + + + K W Sbjct 5235 Y--FLN------FLSDDSFI-FSKPEALK--IFTCENFSNKLQTILHTKVDQTKSW---S 5280 Query 807 LKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFVSLAI 866 K EFCS H IK + +FL P R+L++ +D + D M RFV++ Sbjct 5281 TKGHIEEFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILC 5334 Query 867 DAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDNSAKFWEESFYRDL 926 ++ +++ + +F V+L +++ KD C + E FY +L Sbjct 5335 ESAVYSRYQPEFFNGLFQVFLDKVQQFRKDYC-----------CDPCPPQLLEREFYENL 5383 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 4882 to 5240 Score:109 bits(273), Expect:7e-23, Method:Compositional matrix adjust., Identities:105/384(27%), Positives:177/384(46%), Gaps:30/384(7%) Query 518 YESLSYQEQDELFAMTKRNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKM 577 Y +L + +LF ++ LP T++ K+A+SAK RARTV+ S +++ R H+ + Sbjct 4882 YRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPV 4941 Query 578 LKSM---AATRGSTCVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRI 634 M A C+IG +K+ + LK Y ++ + G DY KCDR P Sbjct 4942 TSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFP---LS 4998 Query 635 FASLILARKHSTCCTNTDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANS 694 F +L A + D + L NE + + +LC G KPGGTSSGDATTA++N+ Sbjct 4999 FRALTAALLYELGGWEEDSWLYL-NEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNT 5057 Query 695 VFNILQATTANVSALMG--ANGNTIVDEEVKDMQFELYVNVYRKSQPDPKFVDRYYAFLN 752 +N + ++ ++ N ++ + V+ + + +F Y FLN Sbjct 5058 FYNYMVHYVVAFKTILSDLSDCNKVMRIAAHNAYTTGDYGVF-NTLLEEQFQTNY--FLN 5114 Query 753 KHFSMMILSDDGVVCYNSDYATKGYIASIQNFKETLYYQNNVFMSEAKCWVETDLKKGPH 812 LSDD + ++ A K I + +NF L + + K W T + Sbjct 5115 ------FLSDDSFI-FSKPGALK--IFTCENFSNKLQTILHTKVDLTKSWATTGHIE--- 5162 Query 813 EFCSQHTLFIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLT 872 EFCS H IK + +FL P R+L++ +D + D M RFV++ ++ + Sbjct 5163 EFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYS 5216 Query 873 KHDDPEYQNVFWVYLQYIEKLYKD 896 ++ + +F V+L +++ KD Sbjct 5217 RYQPEFFNGLFQVFLDKVQQFRKD 5240 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=N7-guanine methyltransferase; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 4888 to 5372 Score:84.3 bits(207), Expect:4e-15, Method:Compositional matrix adjust., Identities:126/544(23%), Positives:207/544(38%), Gaps:93/544(17%) Query 417 FNKDFYDFVVSKGFFKEGSSVTLRHFFFAQDGHA--AITDYSYYAYNLPTMCD---IKQM 471 + + FYD + + G +++ + Q G A+ D+ YY YN P D +K + Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 472 LFCMEVVDRYFEIYDGGCLNASEVIVNNLDKSAGHP-FNKFGKA------RVYYESLSYQ 524 M D++ +I L+ +G P + G + + +L Sbjct 4948 YTYMR--DKFMKIISTD---------EKLNHQSGAPRMSSMGVGVSGFFQKTVWNALPED 4996 Query 525 EQDELFAMTKRNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAAT 584 L + V+P T + K+ K R RT+ G S +++ R H+ + M T Sbjct 4997 FSPRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQT 5056 Query 585 RGSTC---VIGTTKFYGGWDFMLKTLYKD-VDNPHLMGWDYPKCDRAMPNMCRIFASLIL 640 + +IG +KF G+ L + + +++ +MG DY KCDR+ P +CR ++ + Sbjct 5057 AQANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALF 5116 Query 641 ARKHSTCCTNTDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFN--- 697 N + NE L + G + KPGGT+SGD+TTA++NS +N Sbjct 5117 YELGHLEPNN----HWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFV 5172 Query 698 --ILQATT-------------ANVSALMGANGNTIVDEEVKDMQFELYVNVYRKSQPDPK 742 +Q T N++ + GNT E D+ F S D Sbjct 5173 HLYIQYLTFLTTEMPPSYQPLCNLAHQAFSTGNT----ETYDLYF---------SMADDL 5219 Query 743 FVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIASIQNFKETLYYQNNVFMSEAKCW 802 Y+ HF LSDD + T I + NF L ++ AK W Sbjct 5220 NSTEYFL----HF----LSDDSFII---SKPTAFPIFTPANFSMKLQNVLGCYVDPAKSW 5268 Query 803 VETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFV 862 HEFCS H I + + PDP+ +L+ + D ++ + V Sbjct 5269 ---SADGEIHEFCSSHICKINEK----YQYVPDPNNMLAGLICAPEPTPQDK--LIWKLV 5319 Query 863 SLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDNSAKFWEESF 922 + + + + N+F L + L + +SV L K E F Sbjct 5320 ATCAELAVFHFVNPTLFNNIF--------HLLQSLHAEFVSEHSVNLL---PPKLLEIDF 5368 Query 923 YRDL 926 Y DL Sbjct 5369 YTDL 5372 Range 2: 4557 to 4739 Score:50.8 bits(120), Expect:6e-05, Method:Compositional matrix adjust., Identities:55/212(26%), Positives:84/212(39%), Gaps:41/212(19%) Query 25 GLTTDVVFRAFDICNYKAK------------VAGIGKYYKTNTCRFVEVDDEGHRLDSFF 72 GLT D F F YK VA + K +K NT + Sbjct 4557 GLTLDTAFCPFQTGEYKPSSREFYINILNNNVASLRKVFKKNTASIPSENGT-------- 4608 Query 73 VVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQRLTEYTMMDLVYA 132 ++ + T +E+ L K V H F D T +++R T Y++ DLVYA Sbjct 4609 IMLKDTGTAHEIYVAKQLLAKGL-PVLQHARFNHD----GTDYLIRYYTTPYSLGDLVYA 4663 Query 133 LRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKLGERIRQAVLNTV 192 D K +L+ D + D P S Y+ E++R + + + Sbjct 4664 YMVGD------FKHMLLALDITDETCLD----------PGNYSSYYNFKEQLRNKLASVI 4707 Query 193 KFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDF 224 ++++ + L +TLDN DLNG YDFGD+ Sbjct 4708 PNVNKILAAELPLAITLDNIDLNGFLYDFGDY 4739