******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= train.fa CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ seq1_ECOLI 1.0000 100 seq2_ECOLI 1.0000 100 seq3_ECOLI 1.0000 100 seq4_ECOLI 1.0000 100 seq5_ECOLI 1.0000 100 seq6_ECOLI 1.0000 100 seq7_ECOLI 1.0000 100 seq8_ECOLI 1.0000 100 seq9_ECOLI 1.0000 100 seq10_ECOLI 1.0000 100 seq11_ECOLI 1.0000 100 seq12_ECOLI 1.0000 100 seq13_ECOLI 1.0000 100 seq14_ECOLI 1.0000 100 seq15_ECOLI 1.0000 100 seq16_ECOLI 1.0000 100 seq17_ECOLI 1.0000 100 seq18_ECOLI 1.0000 100 seq19_ECOLI 1.0000 100 seq20_ECOLI 1.0000 100 seq21_ECOLI 1.0000 100 seq22_ECOLI 1.0000 100 seq23_ECOLI 1.0000 100 seq24_ECOLI 1.0000 100 seq25_ECOLI 1.0000 100 seq26_ECOLI 1.0000 100 seq27_ECOLI 1.0000 100 seq28_ECOLI 1.0000 100 seq29_ECOLI 1.0000 100 seq30_ECOLI 1.0000 100 seq31_ECOLI 1.0000 100 seq32_ECOLI 1.0000 100 seq33_ECOLI 1.0000 100 seq34_ECOLI 1.0000 100 seq35_ECOLI 1.0000 100 seq36_ECOLI 1.0000 100 seq37_ECOLI 1.0000 100 seq38_ECOLI 1.0000 100 seq39_ECOLI 1.0000 100 seq40_ECOLI 1.0000 100 seq41_ECOLI 1.0000 100 seq42_ECOLI 1.0000 100 seq43_ECOLI 1.0000 100 seq44_ECOLI 1.0000 100 seq45_ECOLI 1.0000 100 seq46_ECOLI 1.0000 100 seq47_ECOLI 1.0000 100 seq48_ECOLI 1.0000 100 seq49_ECOLI 1.0000 100 seq50_ECOLI 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme train.fa -dna -nmotifs 3 -minw 6 -maxw 50 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 50 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.297 C 0.211 G 0.214 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.297 C 0.211 G 0.214 T 0.278 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 width = 32 sites = 7 llr = 162 E-value = 1.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::331:1:6::94a4111:::1::31:1:164 pos.-specific C 1a131:36:6::1:6:394649a43:::31:: probability G 9:6::46144:13:::1:436:::311::3:: matrix T :::476:3::a:1::94:11:::617997446 bits 2.2 * * 2.0 * * 1.8 * * * * 1.6 ** * * * ** Relative 1.3 ** ** * * * *** ** Entropy 1.1 ** * *** *** * **** *** (33.4 bits) 0.9 ** * **** *** * ***** *** ** 0.7 *** ******** *** ******* **** ** 0.4 ************ *** ******* **** ** 0.2 ************************ ******* 0.0 -------------------------------- Multilevel GCGTTTGCACTAAACTTCCCGCCTATTTTTAT consensus AA GCTGG G A C GGC CC CGTA sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------- seq4_ECOLI 57 1.91e-13 CTGCGCCGGA GCGTTTATGCTAAACTGCGCGCCTGTTTTTTT GCCAGTGGTA seq32_ECOLI 52 4.96e-12 CAGGGAGAGC GCCCCGGCACTAGACTACCCGCCTCTTATTTT AGTCTGAGTC seq29_ECOLI 14 7.99e-12 CAAAGCAGCA GCAATTGCAGTAAAATTCCGCACCATTTTGAA ATAAGCTGGC seq6_ECOLI 51 2.46e-11 ACATTCAAAT GCGATTCTGCTACAATCCTCCCCCCGTTCGAA GATTGAGCAA seq12_ECOLI 54 3.63e-11 GCAGTTTCTC GCGCAGGCGCTGAAAATAGCGCCTGTTTTTAT TTCAGGCAAT seq30_ECOLI 19 4.54e-11 ACGAAAACAG CCATTTGCAGTATACTCCCGCCCTAATTTCTT TAACTGGTGC seq22_ECOLI 52 7.46e-11 TCTCGCCGTC GCGTTGCGAGTAGACTTCGTGCCCTTGTCAAA AACTGGAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq4_ECOLI 1.9e-13 56_[+1]_12 seq32_ECOLI 5e-12 51_[+1]_17 seq29_ECOLI 8e-12 13_[+1]_55 seq6_ECOLI 2.5e-11 50_[+1]_18 seq12_ECOLI 3.6e-11 53_[+1]_15 seq30_ECOLI 4.5e-11 18_[+1]_50 seq22_ECOLI 7.5e-11 51_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW width=32 seqs=7 seq4_ECOLI ( 57) GCGTTTATGCTAAACTGCGCGCCTGTTTTTTT 1 seq32_ECOLI ( 52) GCCCCGGCACTAGACTACCCGCCTCTTATTTT 1 seq29_ECOLI ( 14) GCAATTGCAGTAAAATTCCGCACCATTTTGAA 1 seq6_ECOLI ( 51) GCGATTCTGCTACAATCCTCCCCCCGTTCGAA 1 seq12_ECOLI ( 54) GCGCAGGCGCTGAAAATAGCGCCTGTTTTTAT 1 seq30_ECOLI ( 19) CCATTTGCAGTATACTCCCGCCCTAATTTCTT 1 seq22_ECOLI ( 52) GCGTTGCGAGTAGACTTCGTGCCCTTGTCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 32 n= 3450 bayes= 9.54882 E= 1.0e-004 -945 -56 200 -945 -945 224 -945 -945 -6 -56 142 -945 -6 44 -945 63 -105 -56 -945 136 -945 -945 100 104 -105 44 142 -945 -945 143 -58 4 94 -945 100 -945 -945 143 100 -945 -945 -945 -945 185 153 -945 -58 -945 53 -56 42 -96 175 -945 -945 -945 53 143 -945 -945 -105 -945 -945 163 -105 44 -58 63 -105 202 -945 -945 -945 102 100 -96 -945 143 42 -96 -945 102 142 -945 -105 202 -945 -945 -945 224 -945 -945 -945 102 -945 104 -6 44 42 -96 -105 -945 -58 136 -945 -945 -58 163 -105 -945 -945 163 -945 44 -945 136 -105 -56 42 63 94 -945 -945 63 53 -945 -945 104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 32 nsites= 7 E= 1.0e-004 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.142857 0.571429 0.000000 0.285714 0.285714 0.000000 0.428571 0.142857 0.142857 0.000000 0.714286 0.000000 0.000000 0.428571 0.571429 0.142857 0.285714 0.571429 0.000000 0.000000 0.571429 0.142857 0.285714 0.571429 0.000000 0.428571 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 0.000000 1.000000 0.857143 0.000000 0.142857 0.000000 0.428571 0.142857 0.285714 0.142857 1.000000 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.142857 0.285714 0.142857 0.428571 0.142857 0.857143 0.000000 0.000000 0.000000 0.428571 0.428571 0.142857 0.000000 0.571429 0.285714 0.142857 0.000000 0.428571 0.571429 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.285714 0.285714 0.285714 0.142857 0.142857 0.000000 0.142857 0.714286 0.000000 0.000000 0.142857 0.857143 0.142857 0.000000 0.000000 0.857143 0.000000 0.285714 0.000000 0.714286 0.142857 0.142857 0.285714 0.428571 0.571429 0.000000 0.000000 0.428571 0.428571 0.000000 0.000000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRHTKSYRSTARAMTYCSSSCCYNTTTTKWW MEME-1 regular expression -------------------------------------------------------------------------------- GC[GA][TAC]T[TG][GC][CT][AG][CG]TA[AG]A[CA]T[TC]C[CG][CG][GC]CC[TC][ACG]TTT[TC][TG][AT][TA] -------------------------------------------------------------------------------- Time 2.13 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAYCRACKTTTTYAWMGDKG MEME-2 width = 21 sites = 10 llr = 142 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 979::581::222:84514:: pos.-specific C :116712711:::6:1511:: probability G 11:1:4::4::1::1::8249 matrix T :1:33::259878415::361 bits 2.2 2.0 1.8 * 1.6 * Relative 1.3 * * * * * * Entropy 1.1 * * * * ** ** * ** (20.5 bits) 0.9 * *** ** ** *** ** ** 0.7 * ************* ** ** 0.4 ****************** ** 0.2 ****************** ** 0.0 --------------------- Multilevel AAACCAACTTTTTCATAGATG consensus TTGCTG AAAT AC TG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- seq43_ECOLI 72 4.35e-10 AGGATGCAAG AAACCAATTTTTTCATAGAGG TTAACTAA seq45_ECOLI 1 1.29e-08 . AAATCGACGTTTTTTACGTGG TTTTCCGTCG seq34_ECOLI 26 4.01e-08 CCTGTATTAA ATATTGACTTTTTCACCGATG CGTCAAGAAA seq19_ECOLI 62 1.01e-07 TCGGCATGGG GAAGCGCCTTTTTTATAGGTG TCACAAAGGG seq29_ECOLI 71 1.10e-07 TGCCAGCGGC AAACCGAATTAATCAAAGGTG AGAGGCACA seq42_ECOLI 71 1.20e-07 TGGAGGCATA ACCCCAACTTTTATATAGAGG TTTTAATCA seq15_ECOLI 30 1.31e-07 AAAGTTAGAA AAATCACCGTAGTCATCGCTG GTGCTGTAGA seq46_ECOLI 27 2.93e-07 GCCTTCTCCC AAACCAACGTTTATGAAAATG AAGAAATAAC seq27_ECOLI 61 5.64e-07 TGATGCAAGC AGACTAACCCTATCAACGTTG GTATTATTTC seq35_ECOLI 34 1.16e-06 AAGCGGTGAA AAACTCATGTTTTCATCCTGT CTGTGGCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq43_ECOLI 4.4e-10 71_[+2]_8 seq45_ECOLI 1.3e-08 [+2]_79 seq34_ECOLI 4e-08 25_[+2]_54 seq19_ECOLI 1e-07 61_[+2]_18 seq29_ECOLI 1.1e-07 70_[+2]_9 seq42_ECOLI 1.2e-07 70_[+2]_9 seq15_ECOLI 1.3e-07 29_[+2]_50 seq46_ECOLI 2.9e-07 26_[+2]_53 seq27_ECOLI 5.6e-07 60_[+2]_19 seq35_ECOLI 1.2e-06 33_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAYCRACKTTTTYAWMGDKG width=21 seqs=10 seq43_ECOLI ( 72) AAACCAATTTTTTCATAGAGG 1 seq45_ECOLI ( 1) AAATCGACGTTTTTTACGTGG 1 seq34_ECOLI ( 26) ATATTGACTTTTTCACCGATG 1 seq19_ECOLI ( 62) GAAGCGCCTTTTTTATAGGTG 1 seq29_ECOLI ( 71) AAACCGAATTAATCAAAGGTG 1 seq42_ECOLI ( 71) ACCCCAACTTTTATATAGAGG 1 seq15_ECOLI ( 30) AAATCACCGTAGTCATCGCTG 1 seq46_ECOLI ( 27) AAACCAACGTTTATGAAAATG 1 seq27_ECOLI ( 61) AGACTAACCCTATCAACGTTG 1 seq35_ECOLI ( 34) AAACTCATGTTTTCATCCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 4000 bayes= 8.07291 E= 2.2e+001 160 -997 -110 -997 124 -108 -110 -147 160 -108 -997 -997 -997 151 -110 11 -997 173 -997 11 75 -108 90 -997 143 -8 -997 -997 -157 173 -997 -47 -997 -108 90 85 -997 -108 -997 170 -57 -997 -997 153 -57 -997 -110 133 -57 -997 -997 153 -997 151 -997 53 143 -997 -110 -147 43 -108 -997 85 75 124 -997 -997 -157 -108 190 -997 43 -108 -10 11 -997 -997 90 111 -997 -997 207 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 10 E= 2.2e+001 0.900000 0.000000 0.100000 0.000000 0.700000 0.100000 0.100000 0.100000 0.900000 0.100000 0.000000 0.000000 0.000000 0.600000 0.100000 0.300000 0.000000 0.700000 0.000000 0.300000 0.500000 0.100000 0.400000 0.000000 0.800000 0.200000 0.000000 0.000000 0.100000 0.700000 0.000000 0.200000 0.000000 0.100000 0.400000 0.500000 0.000000 0.100000 0.000000 0.900000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.100000 0.700000 0.200000 0.000000 0.000000 0.800000 0.000000 0.600000 0.000000 0.400000 0.800000 0.000000 0.100000 0.100000 0.400000 0.100000 0.000000 0.500000 0.500000 0.500000 0.000000 0.000000 0.100000 0.100000 0.800000 0.000000 0.400000 0.100000 0.200000 0.300000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.900000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYCRACKTTTTYAWMGDKG MEME-2 regular expression -------------------------------------------------------------------------------- AAA[CT][CT][AG][AC][CT][TG]T[TA][TA][TA][CT]A[TA][AC]G[ATG][TG]G -------------------------------------------------------------------------------- Time 4.04 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGGCACATAWTTVC MEME-3 width = 15 sites = 4 llr = 65 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::8:a:a5::3: pos.-specific C :a:3a3a:::::358 probability G ::88:::::::::33 matrix T a:3:::::a:5a8:: bits 2.2 * * * 2.0 * * * 1.8 ** * **** * 1.6 ** * **** * Relative 1.3 ***** **** * * Entropy 1.1 ********** ** * (23.6 bits) 0.9 ************* * 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel TCGGCACATAATTCC consensus TC C T CAG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- seq18_ECOLI 56 5.33e-09 CTGCGAATAT TCGGCACATAATTGC TGTTTGTTTT seq49_ECOLI 6 1.99e-08 CTGTT TCGCCCCATATTTCC TTATCCGCAT seq42_ECOLI 13 2.91e-08 CACACACGTA TCGGCACATATTCCG GGGTGCCCTT seq16_ECOLI 76 4.93e-08 TGCCGAATCA TCTGCACATAATTAC GATTCGATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq18_ECOLI 5.3e-09 55_[+3]_30 seq49_ECOLI 2e-08 5_[+3]_80 seq42_ECOLI 2.9e-08 12_[+3]_73 seq16_ECOLI 4.9e-08 75_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGGCACATAWTTVC width=15 seqs=4 seq18_ECOLI ( 56) TCGGCACATAATTGC 1 seq49_ECOLI ( 6) TCGCCCCATATTTCC 1 seq42_ECOLI ( 13) TCGGCACATATTCCG 1 seq16_ECOLI ( 76) TCTGCACATAATTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 4300 bayes= 10.0688 E= 2.4e+002 -865 -865 -865 185 -865 224 -865 -865 -865 -865 181 -15 -865 24 181 -865 -865 224 -865 -865 133 24 -865 -865 -865 224 -865 -865 175 -865 -865 -865 -865 -865 -865 185 175 -865 -865 -865 75 -865 -865 85 -865 -865 -865 185 -865 24 -865 143 -25 124 22 -865 -865 183 22 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 4 E= 2.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.500000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCACATAWTTVC MEME-3 regular expression -------------------------------------------------------------------------------- TC[GT][GC]C[AC]CATA[AT]T[TC][CAG][CG] -------------------------------------------------------------------------------- Time 5.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq1_ECOLI 7.87e-01 100 seq2_ECOLI 1.61e-01 100 seq3_ECOLI 1.17e-01 100 seq4_ECOLI 2.91e-10 56_[+1(1.91e-13)]_12 seq5_ECOLI 6.73e-01 100 seq6_ECOLI 8.17e-08 50_[+1(2.46e-11)]_18 seq7_ECOLI 7.96e-01 100 seq8_ECOLI 1.55e-01 100 seq9_ECOLI 2.86e-01 100 seq10_ECOLI 9.14e-01 100 seq11_ECOLI 9.99e-01 100 seq12_ECOLI 3.29e-07 53_[+1(3.63e-11)]_15 seq13_ECOLI 7.96e-01 100 seq14_ECOLI 8.51e-01 100 seq15_ECOLI 3.01e-04 29_[+2(1.31e-07)]_50 seq16_ECOLI 1.58e-05 75_[+3(4.93e-08)]_10 seq17_ECOLI 3.89e-01 100 seq18_ECOLI 6.95e-06 55_[+3(5.33e-09)]_30 seq19_ECOLI 5.74e-05 61_[+2(1.01e-07)]_18 seq20_ECOLI 5.72e-01 100 seq21_ECOLI 6.28e-01 100 seq22_ECOLI 2.15e-07 51_[+1(7.46e-11)]_17 seq23_ECOLI 9.53e-01 100 seq24_ECOLI 7.60e-02 100 seq25_ECOLI 3.55e-01 100 seq26_ECOLI 2.74e-01 100 seq27_ECOLI 1.27e-03 60_[+2(5.64e-07)]_19 seq28_ECOLI 6.72e-01 100 seq29_ECOLI 1.03e-12 13_[+1(7.99e-12)]_25_[+2(1.10e-07)]_\ 9 seq30_ECOLI 1.65e-08 18_[+1(4.54e-11)]_50 seq31_ECOLI 9.28e-01 100 seq32_ECOLI 1.07e-08 51_[+1(4.96e-12)]_17 seq33_ECOLI 3.65e-02 59_[+1(8.60e-05)]_9 seq34_ECOLI 2.78e-05 25_[+2(4.01e-08)]_54 seq35_ECOLI 1.09e-04 33_[+2(1.16e-06)]_46 seq36_ECOLI 1.79e-01 100 seq37_ECOLI 5.97e-01 100 seq38_ECOLI 1.62e-01 100 seq39_ECOLI 9.78e-01 100 seq40_ECOLI 3.74e-01 100 seq41_ECOLI 1.91e-01 100 seq42_ECOLI 9.92e-10 12_[+3(2.91e-08)]_43_[+2(1.20e-07)]_\ 9 seq43_ECOLI 2.12e-06 71_[+2(4.35e-10)]_8 seq44_ECOLI 7.63e-01 100 seq45_ECOLI 2.15e-05 [+2(1.29e-08)]_79 seq46_ECOLI 1.25e-03 26_[+2(2.93e-07)]_53 seq47_ECOLI 1.05e-01 100 seq48_ECOLI 5.20e-01 100 seq49_ECOLI 2.57e-05 5_[+3(1.99e-08)]_80 seq50_ECOLI 4.88e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************