MARGARITA VOROBEVA

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Alignment of proteins

Characteristics of two best alignment of poliovirus polyprotein and Foot-and-mouth disease virus polyprotein

IDACScore (B)% Identity% Positive% GapsSite lengthMature proteins
POLG_POL1M POLG_FMDVSP03300 P03311251(641)28488615Viral protein genome-linked; Protein 3CD
644Protein 3B-3; Picornain 3C; RNA-directed RNA polymerase 3D-POL
160(405)304415319Protease 2A; Protein 2B; Protein 2C
401Protein 2A; Protein 2B; Protein 2C

Figure 1. Dot matrix view

Comparing alignment score with random score. Homologous and non-homologous proteins.

typeIDScoreMedianQ1Score (B)p
HomologousCHEA_ECOLI CHEA_BACSU1046,595103,5112,9411.003E-34
Non-homologousCPOB_ECOLI ALKH_BACSU35,537,7543,250,59090.6639

Alignment KST73321.1 with homologous proteins from Swiss-Prot (BLAST)

IDACOrganism% Identity% Positive% GapsSite lengthScore (B)Expect% Coverage
KATG_BURP1Q3JNW6.1Burkholderia pseudomallei (strain 1710b)9697072814310100
KATG_BURMAQ62H74.1Burkholderia mallei (strain ATCC 23344)9697072814290100

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