Результаты подсчета Ka/Ks программой PAML для генов белков ARGB_ECOLI и ARGB_BUCAP.

PAL2NAL output

CLUSTAL W multiple sequence alignment

P59098|ARGB_BUCAP    atgatgagtcctttggttattaaattaggtggagttcttttagaaagtgataatgcaatg
P0A6C8|ARGB_ECOLI    atgatgaatccattaattatcaaactgggcggcgtactgctggatagtgaagaggcgctg

P59098|ARGB_BUCAP    atgcgtttgtttaaagcgcttcttgattatcaaaaatctaataaacgacatattttaata
P0A6C8|ARGB_ECOLI    gaacgtctgtttagcgcactggtgaattatcgtgagtcacatcagcgtccgctggtgatt

P59098|ARGB_BUCAP    attcatggaggaggacgcttaatagatgatttaatgaataaattatcattgcctattgag
P0A6C8|ARGB_ECOLI    gtgcacggcggcggttgcgtggtggatgagctgatgaaagggctgaatctgccggtgaaa

P59098|ARGB_BUCAP    aaaaaaaatggtttgcgaatcactcaatctgaacatattaatgttattacaggtgcgtta
P0A6C8|ARGB_ECOLI    aagaaaaacggcctgcgggtgacgcctgctgatcagatagacattatcaccggagcactg

P59098|ARGB_BUCAP    gcaggaacagctaacaaaattctgctttcatgggcattaaaatataaaataaatgctgtt
P0A6C8|ARGB_ECOLI    gcgggaacggcaaataaaaccctgttggcatgggcgaagaaacatcagattgcggccgta

P59098|ARGB_BUCAP    ggtttgtgtttagcagatggaaaaagtgttaatgtagaaaaattagatcaggatttaggg
P0A6C8|ARGB_ECOLI    ggtttgtttctcggtgacggcgacagcgtcaaagtgacccagcttgatgaagagttaggt

P59098|ARGB_BUCAP    cacgttggaaaagctaaaccaggttctcctctttttttaacaaaattatgcgaacaaggc
P0A6C8|ARGB_ECOLI    catgttggactggcgcagccaggttcgcctaagcttatcaactccttgctggagaacggt

P59098|ARGB_BUCAP    attttaccaatcattagttctataggtattacagatgatggtttattaatgaatgttaat
P0A6C8|ARGB_ECOLI    tatctgccggtggtcagctccattggcgtaacagacgaagggcaactgatgaacgtcaat

P59098|ARGB_BUCAP    gcagatttagcagccacggctttggctactaccttaaaagcaaatttgattttattatct
P0A6C8|ARGB_ECOLI    gccgaccaggcggcaacggcgctggcggcaacgctgggcgcggatctgattttgctctcc

P59098|ARGB_BUCAP    gatataagttcaatattagatggtaaaggtcaaagaatttcagaaataaattaccttcaa
P0A6C8|ARGB_ECOLI    gacgtcagcggcattctcgacggcaaagggcaacgcattgccgaaatgaccgccgcgaaa

P59098|ARGB_BUCAP    gctaaaaaattaatatctcagggtattattactaatggtatgatcgttaaggtgaatgca
P0A6C8|ARGB_ECOLI    gcagaacaactgattgagcagggcattattactgacggcatgatagtgaaagtgaacgcg

P59098|ARGB_BUCAP    gctttagaagcagctcgggtattacaacgttctatagatattgctagttggcaaaataca
P0A6C8|ARGB_ECOLI    gcgctggatgcggcccgcacgctgggccgtccggtagatatcgcctcctggcgtcatgcg

P59098|ARGB_BUCAP    gatcaacttaaattattatttaatggtatcaatattggtactcgagttttagta
P0A6C8|ARGB_ECOLI    gagcagcttccggcactgtttaacggtatgccgatgggtacgcggattttagct






Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package:
Ks и Ka посчитаны программой PAML:
	KS = 10.4883
	KA = 0.2571
	KA/KS = 0.0245