#
echo proteins > graph.txt
#
needle P-PDXH_ECOLI.fasta p1.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle P-PDXH_ECOLI.fasta p2.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle P-PDXH_ECOLI.fasta p3.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle P-PDXH_ECOLI.fasta p4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle P-PDXH_ECOLI.fasta p5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle P-PDXH_ECOLI.fasta p6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle p1.fasta p2.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p1.fasta p3.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p1.fasta p4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p1.fasta p5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p1.fasta p6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle p2.fasta p3.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p2.fasta p4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p2.fasta p5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p2.fasta p6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle p3.fasta p4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p3.fasta p5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p3.fasta p6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle p4.fasta p5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle p4.fasta p6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle p5.fasta p6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
echo " " >> graph.txt
echo nucleotids >> graph.txt
#
needle N-ECOLI.fasta n1.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle N-ECOLI.fasta n2.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle N-ECOLI.fasta n3.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle N-ECOLI.fasta n4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle N-ECOLI.fasta n5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle N-ECOLI.fasta n6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle n1.fasta n2.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n1.fasta n3.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n1.fasta n4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n1.fasta n5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n1.fasta n6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle n2.fasta n3.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n2.fasta n4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n2.fasta n5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n2.fasta n6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle n3.fasta n4.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n3.fasta n5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n3.fasta n6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle n4.fasta n5.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
needle n4.fasta n6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt
#
needle n5.fasta n6.fasta -auto -stdout | grep -h "# Identity: " >> graph.txt