RID: 9ZSM97KZ01N Job Title:Protein Sequence Program: BLASTP Query: None ID: lcl|Query_571028(amino acid) Length: 247 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 528 528 100% 2e-173 100.00 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11142 528 528 100% 3e-173 100.00 4468 P0C6V0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 11144 510 510 100% 5e-167 95.95 4474 P0C6V1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 510 510 100% 6e-167 95.95 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Murine hepat... NA 76344 498 498 100% 1e-162 94.33 4416 P0C6U9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 497 497 100% 2e-162 94.33 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11143 445 445 89% 2e-157 95.02 500 P26627.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 233 233 100% 2e-70 46.22 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 31631 233 233 100% 3e-70 46.22 4383 P0C6U7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 232 232 100% 6e-70 46.15 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11132 232 232 100% 6e-70 46.15 4383 P0C6U0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 232 232 100% 6e-70 46.15 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 232 232 100% 6e-70 46.15 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine enter... NA 233262 231 231 100% 7e-70 46.15 4383 P0C6T8.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine respi... NA 233264 231 231 100% 7e-70 46.15 4383 P0C6T9.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bovine coron... NA 11133 230 230 100% 2e-69 45.75 4383 P0C6U1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 230 230 100% 3e-69 45.75 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443240 174 174 100% 1e-49 41.30 4441 P0C6U4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443239 173 173 100% 1e-49 41.30 4471 P0C6U3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 173 173 100% 2e-49 41.30 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 173 173 100% 2e-49 41.30 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Human corona... NA 443241 169 169 100% 3e-48 40.89 4421 P0C6U5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 169 169 100% 3e-48 40.89 7132 P0C6X4.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 1 to 247 Score:528 bits(1361), Expect:2e-173, Method:Compositional matrix adjust., Identities:247/247(100%), Positives:247/247(100%), Gaps:0/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG Sbjct 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY Sbjct 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 Query 241 LLKGYRG 247 LLKGYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain A59] Sequence ID: P0C6V0.1 Length: 4468 Range 1: 1 to 247 Score:528 bits(1360), Expect:3e-173, Method:Compositional matrix adjust., Identities:247/247(100%), Positives:247/247(100%), Gaps:0/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG Sbjct 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY Sbjct 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 Query 241 LLKGYRG 247 LLKGYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain JHM] Sequence ID: P0C6V1.1 Length: 4474 Range 1: 1 to 247 Score:510 bits(1314), Expect:5e-167, Method:Compositional matrix adjust., Identities:237/247(96%), Positives:241/247(97%), Gaps:0/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +CSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLS+QAW LG Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKT AMGLFKR CLCNTREC CDAHVAF LFTVQPDGVCLGNGRFIGWFVPVTAIPEY Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNP+GKYSCKAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPRGKYSCKAYA 240 Query 241 LLKGYRG 247 LL+GYRG Sbjct 241 LLRGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 1 to 247 Score:510 bits(1313), Expect:6e-167, Method:Compositional matrix adjust., Identities:237/247(96%), Positives:241/247(97%), Gaps:0/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +CSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLS+QAW LG Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKT AMGLFKR CLCNTREC CDAHVAF LFTVQPDGVCLGNGRFIGWFVPVTAIPEY Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNP+GKYSCKAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPRGKYSCKAYA 240 Query 241 LLKGYRG 247 LL+GYRG Sbjct 241 LLRGYRG 247 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Murine hepatitis virus strain 2] Sequence ID: P0C6U9.1 Length: 4416 Range 1: 1 to 247 Score:498 bits(1281), Expect:1e-162, Method:Compositional matrix adjust., Identities:233/247(94%), Positives:236/247(95%), Gaps:0/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLG+PERSEEDGFCPSAAQEPK KGKTL+NHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGSPERSEEDGFCPSAAQEPKTKGKTLINHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +CSRLPALECCVQSAIIRDIFVDEDP VEASTMMALQFGSAVLVKPSKRLSIQAW LG Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPLNVEASTMMALQFGSAVLVKPSKRLSIQAWAKLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKT AMGLFKR CLCNTREC CDAHVAF LFTVQPDGVCLGNGRFIGWFVPVTAIP Y Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPAY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYS KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSRKAYA 240 Query 241 LLKGYRG 247 LLKGYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 1 to 247 Score:497 bits(1280), Expect:2e-162, Method:Compositional matrix adjust., Identities:233/247(94%), Positives:236/247(95%), Gaps:0/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLG+PERSEEDGFCPSAAQEPK KGKTL+NHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGSPERSEEDGFCPSAAQEPKTKGKTLINHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +CSRLPALECCVQSAIIRDIFVDEDP VEASTMMALQFGSAVLVKPSKRLSIQAW LG Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPLNVEASTMMALQFGSAVLVKPSKRLSIQAWAKLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKT AMGLFKR CLCNTREC CDAHVAF LFTVQPDGVCLGNGRFIGWFVPVTAIP Y Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPAY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYS KAYA Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSRKAYA 240 Query 241 LLKGYRG 247 LLKGYRG Sbjct 241 LLKGYRG 247 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1-non-structural protein 3 fusion; Short=nsp1-nsp3 fusion [Murine hepatitis virus strain defective JHM] Sequence ID: P26627.1 Length: 500 Range 1: 1 to 221 Score:445 bits(1145), Expect:2e-157, Method:Compositional matrix adjust., Identities:210/221(95%), Positives:212/221(95%), Gaps:0/221(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV Sbjct 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +CSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLS+QAW LG Sbjct 61 DCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSVQAWAKLG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 VLPKT AMGLFKR CLCNTREC CDAHVAF LFTVQPDGVCLGNGRFIGWFVPVTAIPEY Sbjct 121 VLPKTPAMGLFKRFCLCNTRECVCDAHVAFQLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVED 221 AKQWLQPWSILLRKGGNKGSVTSGH RRAVTMPVYDFN D Sbjct 181 AKQWLQPWSILLRKGGNKGSVTSGHSRRAVTMPVYDFNATD 221 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 1 to 246 Score:233 bits(594), Expect:2e-70, Method:Compositional matrix adjust., Identities:116/251(46%), Positives:156/251(62%), Gaps:9/251(3%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF+R +CNT C+ + HVA+ L+ + P GVCLG G+F+GW +P+ +P Sbjct 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGH----FRRAVTMPVYDFNVEDACEEVHLNPKGKYSC 236 +++++ PW + LRK G KG+ H F VYDF VEDA ++VH PKGK+S Sbjct 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-----VYDFKVEDAYDQVHDEPKGKFSK 235 Query 237 KAYALLKGYRG 247 KAYAL++GYRG Sbjct 236 KAYALIRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus OC43] Sequence ID: P0C6U7.1 Length: 4383 Range 1: 1 to 246 Score:233 bits(594), Expect:3e-70, Method:Compositional matrix adjust., Identities:116/251(46%), Positives:156/251(62%), Gaps:9/251(3%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDMICSTTAQKLETDGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNASPYHLEVLLQDALQSREAVLVTTPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF+R +CNT C+ + HVA+ L+ + P GVCLG G+F+GW +P+ +P Sbjct 121 CNPKGWTMGLFRRRSVCNTGRCTVNKHVAYQLYMIDPAGVCLGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGH----FRRAVTMPVYDFNVEDACEEVHLNPKGKYSC 236 +++++ PW + LRK G KG+ H F VYDF VEDA ++VH PKGK+S Sbjct 181 SRKFIVPWVMYLRKRGEKGAYNKDHGCGGFGH-----VYDFKVEDAYDQVHDEPKGKFSK 235 Query 237 KAYALLKGYRG 247 KAYAL++GYRG Sbjct 236 KAYALIRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 1 to 246 Score:232 bits(591), Expect:6e-70, Method:Compositional matrix adjust., Identities:114/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ H +R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDH-KRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus Mebus] Sequence ID: P0C6U0.1 Length: 4383 Range 1: 1 to 246 Score:232 bits(591), Expect:6e-70, Method:Compositional matrix adjust., Identities:114/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ H +R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDH-KRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 1 to 246 Score:232 bits(591), Expect:6e-70, Method:Compositional matrix adjust., Identities:114/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ H +R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDH-KRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 1 to 246 Score:232 bits(591), Expect:6e-70, Method:Compositional matrix adjust., Identities:114/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ H +R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDH-KRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6T8.1 Length: 4383 Range 1: 1 to 246 Score:231 bits(590), Expect:7e-70, Method:Compositional matrix adjust., Identities:114/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ H +R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDH-KRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6T9.1 Length: 4383 Range 1: 1 to 246 Score:231 bits(590), Expect:7e-70, Method:Compositional matrix adjust., Identities:114/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ H +R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIVPWVMYLRKCGEKGAYNKDH-KRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bovine coronavirus strain Quebec] Sequence ID: P0C6U1.1 Length: 4383 Range 1: 1 to 246 Score:230 bits(586), Expect:2e-69, Method:Compositional matrix adjust., Identities:113/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ ++R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIAPWVMYLRKCGEKGAYIK-DYKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 1 to 246 Score:230 bits(586), Expect:3e-69, Method:Compositional matrix adjust., Identities:113/247(46%), Positives:155/247(62%), Gaps:1/247(0%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M+K+ KYGL WAPEFPWM +A EKL NP SE D C + AQ+ + G NHV V Sbjct 1 MSKINKYGLELHWAPEFPWMFEDAEEKLDNPSSSEVDIVCSTTAQKLETGGICPENHVMV 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C RL ECCVQS++IR+I ++ P +E ALQ AVLV P +S++A G Sbjct 61 DCRRLLKQECCVQSSLIREIVMNTRPYDLEVLLQDALQSREAVLVTPPLGMSLEACYVRG 120 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 P MGLF+R +CNT C+ + HVA+ L+ + P GVC G G+F+GW +P+ +P Sbjct 121 CNPNGWTMGLFRRRSVCNTGRCAVNKHVAYQLYMIDPAGVCFGAGQFVGWVIPLAFMPVQ 180 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +++++ PW + LRK G KG+ ++R VY+F VEDA + VH PKGK+S KAYA Sbjct 181 SRKFIAPWVMYLRKCGEKGAYIKD-YKRGGFEHVYNFKVEDAYDLVHDEPKGKFSKKAYA 239 Query 241 LLKGYRG 247 L++GYRG Sbjct 240 LIRGYRG 246 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6U4.1 Length: 4441 Range 1: 1 to 222 Score:174 bits(440), Expect:1e-49, Method:Compositional matrix adjust., Identities:102/247(41%), Positives:133/247(53%), Gaps:25/247(10%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M K KYGLGFKWAPEF W+LP+A+E+L +P +S+E G CPS Q + G NHV++ Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C + E VQS +IRDIFV ED VE T A++ G+A+L+K +LG Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLH-------SLG 113 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF R +V HL ++ G F+GW VP +P Y Sbjct 114 GFPKGYVMGLF--------RSYKTKRYVVHHL-SMTTSTTNFGED-FLGWIVPFGFMPSY 163 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +W Q R + + +F+ YDF+VEDA EVH PKGKYS KAYA Sbjct 164 VHKWFQ----FCRLYIEESDLIISNFK----FDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 241 LLKGYRG 247 LL+ YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6U3.1 Length: 4471 Range 1: 1 to 222 Score:173 bits(439), Expect:1e-49, Method:Compositional matrix adjust., Identities:102/247(41%), Positives:133/247(53%), Gaps:25/247(10%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M K KYGLGFKWAPEF W+LP+A+E+L +P +S+E G CPS Q + G NHV++ Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C + E VQS +IRDIFV ED VE T A++ G+A+L+K +LG Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLH-------SLG 113 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF R +V HL ++ G F+GW VP +P Y Sbjct 114 GFPKGYVMGLF--------RSYKTKRYVVHHL-SMTTSTTNFGED-FLGWIVPFGFMPSY 163 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +W Q R + + +F+ YDF+VEDA EVH PKGKYS KAYA Sbjct 164 VHKWFQ----FCRLYIEESDLIISNFK----FDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 241 LLKGYRG 247 LL+ YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 1 to 222 Score:173 bits(439), Expect:2e-49, Method:Compositional matrix adjust., Identities:102/247(41%), Positives:133/247(53%), Gaps:25/247(10%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M K KYGLGFKWAPEF W+LP+A+E+L +P +S+E G CPS Q + G NHV++ Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C + E VQS +IRDIFV ED VE T A++ G+A+L+K +LG Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLH-------SLG 113 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF R +V HL ++ G F+GW VP +P Y Sbjct 114 GFPKGYVMGLF--------RSYKTKRYVVHHL-SMTTSTTNFGED-FLGWIVPFGFMPSY 163 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +W Q R + + +F+ YDF+VEDA EVH PKGKYS KAYA Sbjct 164 VHKWFQ----FCRLYIEESDLIISNFK----FDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 241 LLKGYRG 247 LL+ YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 1 to 222 Score:173 bits(439), Expect:2e-49, Method:Compositional matrix adjust., Identities:102/247(41%), Positives:133/247(53%), Gaps:25/247(10%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M K KYGLGFKWAPEF W+LP+A+E+L +P +S+E G CPS Q + G NHV++ Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C + E VQS +IRDIFV ED VE T A++ G+A+L+K +LG Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLH-------SLG 113 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF R +V HL ++ G F+GW VP +P Y Sbjct 114 GFPKGYVMGLF--------RSYKTKRYVVHHL-SMTTSTTNFGED-FLGWIVPFGFMPSY 163 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +W Q R + + +F+ YDF+VEDA EVH PKGKYS KAYA Sbjct 164 VHKWFQ----FCRLYIEESDLIISNFK----FDDYDFSVEDAYAEVHAEPKGKYSQKAYA 215 Query 241 LLKGYRG 247 LL+ YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PL1/PL2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6U5.1 Length: 4421 Range 1: 1 to 222 Score:169 bits(429), Expect:3e-48, Method:Compositional matrix adjust., Identities:101/247(41%), Positives:131/247(53%), Gaps:25/247(10%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M K KYGLGFKWAPEF W+LP+A+E+L +P +S+E G CPS Q + G NHV++ Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C + E VQS +IRDIFV ED VE T A++ G+A+L+K +LG Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLH-------SLG 113 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF R +V HL ++ G F GW VP +P Y Sbjct 114 GFPKGYVMGLF--------RSYKTKRYVVHHL-SMTTSTTNFGED-FFGWIVPFGFMPSY 163 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +W Q R + + +F+ YDF+VE A EVH PKGKYS KAYA Sbjct 164 VHKWFQ----FCRLYIEESDLIISNFK----FDDYDFSVEAAYAEVHAEPKGKYSQKAYA 215 Query 241 LLKGYRG 247 LL+ YRG Sbjct 216 LLRQYRG 222 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 1 to 222 Score:169 bits(429), Expect:3e-48, Method:Compositional matrix adjust., Identities:101/247(41%), Positives:131/247(53%), Gaps:25/247(10%) Query 1 MAKMGKYGLGFKWAPEFPWMLPNASEKLGNPERSEEDGFCPSAAQEPKVKGKTLVNHVRV 60 M K KYGLGFKWAPEF W+LP+A+E+L +P +S+E G CPS Q + G NHV++ Sbjct 1 MIKTSKYGLGFKWAPEFRWLLPDAAEELASPMKSDEGGLCPSTGQAMESVGFVYDNHVKI 60 Query 61 NCSRLPALECCVQSAIIRDIFVDEDPQKVEASTMMALQFGSAVLVKPSKRLSIQAWTNLG 120 +C + E VQS +IRDIFV ED VE T A++ G+A+L+K +LG Sbjct 61 DCRCILGQEWHVQSNLIRDIFVHEDLHVVEVLTKTAVKSGTAILIKSPLH-------SLG 113 Query 121 VLPKTAAMGLFKRVCLCNTRECSCDAHVAFHLFTVQPDGVCLGNGRFIGWFVPVTAIPEY 180 PK MGLF R +V HL ++ G F GW VP +P Y Sbjct 114 GFPKGYVMGLF--------RSYKTKRYVVHHL-SMTTSTTNFGED-FFGWIVPFGFMPSY 163 Query 181 AKQWLQPWSILLRKGGNKGSVTSGHFRRAVTMPVYDFNVEDACEEVHLNPKGKYSCKAYA 240 +W Q R + + +F+ YDF+VE A EVH PKGKYS KAYA Sbjct 164 VHKWFQ----FCRLYIEESDLIISNFK----FDDYDFSVEAAYAEVHAEPKGKYSQKAYA 215 Query 241 LLKGYRG 247 LL+ YRG Sbjct 216 LLRQYRG 222