RID: 9ZFFDF8V01N Job Title:Protein Sequence Program: BLASTP Query: None ID: lcl|Query_6287(amino acid) Length: 928 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 1931 1931 100% 0.0 100.00 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 1919 1919 100% 0.0 99.25 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 1911 1911 100% 0.0 98.92 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 1775 1775 100% 0.0 90.84 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 1774 1774 100% 0.0 90.62 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 1759 1759 100% 0.0 90.30 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 1752 1752 100% 0.0 89.44 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 1751 1751 100% 0.0 89.44 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 1745 1745 100% 0.0 89.12 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 1741 1741 100% 0.0 89.12 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 1739 1739 100% 0.0 89.01 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 1353 1353 100% 0.0 68.27 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 1347 1347 100% 0.0 67.84 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 1347 1347 100% 0.0 67.84 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 1340 1340 100% 0.0 67.95 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 1311 1311 100% 0.0 66.31 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 1304 1304 99% 0.0 67.03 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 1296 1296 99% 0.0 66.06 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 1294 1294 99% 0.0 66.24 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 1293 1293 99% 0.0 66.13 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 1292 1292 99% 0.0 66.06 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 1158 1158 99% 0.0 61.13 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 1158 1158 99% 0.0 60.92 6631 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 1158 1158 99% 0.0 61.13 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 1128 1128 100% 0.0 58.24 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 1115 1115 99% 0.0 58.58 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 1112 1112 100% 0.0 57.07 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 1103 1103 99% 0.0 57.83 6709 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 1091 1091 100% 0.0 55.52 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 1079 1079 100% 0.0 56.04 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rat coronavi... NA 33740 603 603 33% 0.0 93.16 307 Q9WQ77.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Turkey coron... NA 231430 440 440 33% 5e-147 67.75 306 Q9WQ76.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Berne virus NA 11156 122 122 49% 7e-27 25.97 6857 P0C6V7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Breda virus ... NA 360393 116 116 44% 6e-25 27.01 6733 P0C6V8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 92.8 92.8 42% 9e-18 27.25 6872 Q008X6.1 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Simian hemor... NA 38143 58.2 58.2 31% 4e-07 24.09 3595 Q68772.4 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV VR2332 NA 300559 55.1 55.1 33% 3e-06 25.60 3960 Q9WJB2.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lactate dehy... NA 300016 53.5 53.5 23% 9e-06 27.13 3616 Q83017.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV HB-1(s... NA 300563 52.8 52.8 26% 2e-05 26.05 3961 Q8B912.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lactate dehy... NA 300015 51.2 51.2 23% 5e-05 27.27 3637 Q06502.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV 16244B NA 300561 50.1 50.1 33% 1e-04 24.85 3961 Q9YN02.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lelystad virus NA 11049 48.9 48.9 34% 2e-04 25.95 3855 Q04561.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV SD 01-08 NA 857306 48.9 48.9 34% 2e-04 25.95 3838 A0MD28.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117128 44.7 44.7 16% 0.005 25.86 3080 P18479.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117130 42.7 42.7 16% 0.020 25.29 3083 O36979.2 RecName: Full=Meiosis-specific APC/C activator protein AMA1;... Saccharomyce... NA 559292 40.8 40.8 6% 0.062 32.39 593 P50082.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117129 40.8 40.8 16% 0.076 24.71 3083 Q89330.1 RecName: Full=Genome polyprotein; Contains: RecName:... Watermelon m... NA 148360 40.4 40.4 11% 0.078 27.83 1017 P18478.3 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 4428 to 5355 Score:1931 bits(5002), Expect:0.0, Method:Compositional matrix adjust., Identities:928/928(100%), Positives:928/928(100%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID Sbjct 4428 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4487 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS Sbjct 4488 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 4547 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP Sbjct 4548 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4607 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY Sbjct 4608 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4667 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND Sbjct 4668 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4727 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY Sbjct 4728 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4787 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK Sbjct 4788 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4847 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4848 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4907 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL Sbjct 4908 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4967 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH Sbjct 4968 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5027 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS Sbjct 5028 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5087 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ Sbjct 5088 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5147 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ Sbjct 5148 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 5207 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV Sbjct 5208 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5267 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS Sbjct 5268 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5327 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDGLKFTDESFYKNMYLKSAVMQ Sbjct 5328 VILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 4458 to 5385 Score:1919 bits(4971), Expect:0.0, Method:Compositional matrix adjust., Identities:921/928(99%), Positives:925/928(99%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID Sbjct 4458 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4517 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVR+NLS Sbjct 4518 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4577 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDCS+LCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP Sbjct 4578 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4637 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRALLNTV FADTLV+VGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY Sbjct 4638 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4697 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND Sbjct 4698 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4757 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY Sbjct 4758 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4817 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK Sbjct 4818 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4877 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4878 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4937 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL Sbjct 4938 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4997 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH Sbjct 4998 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5057 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS Sbjct 5058 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5117 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ Sbjct 5118 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5177 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ Sbjct 5178 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 5237 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV Sbjct 5238 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5297 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG QILDSYS Sbjct 5298 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS 5357 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDGLKFT+ESFYKNMYLKSAVMQ Sbjct 5358 VILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 4408 to 5335 Score:1911 bits(4951), Expect:0.0, Method:Compositional matrix adjust., Identities:918/928(99%), Positives:924/928(99%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID Sbjct 4408 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4467 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVR+NLS Sbjct 4468 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4527 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDCS+LCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP Sbjct 4528 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4587 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRALLNTV FADTLV+VGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY Sbjct 4588 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4647 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND Sbjct 4648 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 4707 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY Sbjct 4708 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 4767 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK Sbjct 4768 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 4827 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4828 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4887 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL Sbjct 4888 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 4947 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH Sbjct 4948 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 5007 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS Sbjct 5008 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 5067 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ Sbjct 5068 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 5127 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYA+KGYIANIS FQQ Sbjct 5128 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANISAFQQ 5187 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV Sbjct 5188 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 5247 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HENEEYQKVFRVYLEYIKKLYNDLG QILDSYS Sbjct 5248 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQILDSYS 5307 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDGLKFT+ESFYKNMYLKSAVMQ Sbjct 5308 VILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 4403 to 5330 Score:1775 bits(4597), Expect:0.0, Method:Compositional matrix adjust., Identities:843/928(91%), Positives:881/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRGTSVNARLVPCASGL TDVQLRAFDICN NRAGIGLYYKVNCCRFQR D Sbjct 4403 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRAD 4462 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 +DGN LDKFFV+KRTNLEVYNKEK YELTK CGVVAEH+FFTFD++GSRVPHIVRK+LS Sbjct 4463 EDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4522 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDCS L EIL YA+C ESYF KKDWYDFVEN DIIN+YKKLGP Sbjct 4523 KYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGP 4582 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRALLNT FADTLV+ GLVGVLTLDNQDLYGQWYDFGDF++T PG GVAVADSYYSY Sbjct 4583 IFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4642 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LD ELF+N +YR+FDLVQYDFTD+KLELFNKYFKYW M YHPNT +C++D Sbjct 4643 MMPMLTMCHALDSELFINGTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTCECEDD 4702 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLP TCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN+DVDTHRY Sbjct 4703 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4762 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASALLDLRTCCFSVAAITSG+KFQTVKPGNFNQDFYEF+ Sbjct 4763 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4822 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV KYFEIYD Sbjct 4823 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYD 4882 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPA+QVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+E+YAYTKRNVLPTLTQMNL Sbjct 4883 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTLTQMNL 4942 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4943 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5002 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVD+PVLMGWDYPKCDRAMPNILRI+SSLVLARKH+ CCSH DRFYRLANECAQVLS Sbjct 5003 LIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANECAQVLS 5062 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVCSLMACNGHKIEDLSIR LQ Sbjct 5063 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5122 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYSNVYR D+VD FVNEYYEFL KHFSMMILSDDGVVCYNS++ASKGYIANIS FQQ Sbjct 5123 KRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ 5182 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSE+KCWVE DI GPHEFCSQHTMLVK+DGD VYLPYPDPSRILGAGCFV Sbjct 5183 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5242 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HEN EYQ VFRVYLEYIKKLYNDLGNQILDSYS Sbjct 5243 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS 5302 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDE+FYKNMYL+SAVMQ Sbjct 5303 VILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 4455 to 5382 Score:1774 bits(4596), Expect:0.0, Method:Compositional matrix adjust., Identities:841/928(91%), Positives:883/928(95%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNR+RGTSVNARLVPCASGL TDVQLRAFDICN NRAGIGLYYKVNCCRFQR+D Sbjct 4455 SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVD 4514 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 +DGNKLDKFFVVKRTNLEVYNKEK YELTK CGVVAEH+FFTFD++GSRVPHIVRK+LS Sbjct 4515 EDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4574 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 K+TMLDLCYALRHFD NDCS L EIL YA+C+ESYF KKDWYDFVENPDIIN+YKKLGP Sbjct 4575 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGP 4634 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRALLNT FAD LV+ GLVGVLTLDNQDLYGQWYDFGDF++T PG GVAVADSYYSY Sbjct 4635 IFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4694 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LD ELFVN +YR+FDLVQYDFTD+KLELF KYFK+W M YHPNT +C++D Sbjct 4695 MMPMLTMCHALDSELFVNGTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCECEDD 4754 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLP TCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN+DVDTHRY Sbjct 4755 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4814 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASALLDLRTCCFSVAAITSG+KFQTVKPGNFNQDFYEF+ Sbjct 4815 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4874 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV KYFEIY+ Sbjct 4875 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYE 4934 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPA+QVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4935 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4994 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4995 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5054 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVD+PVLMGWDYPKCDRAMPNILRIVSSLVLARKH+ CCSH DRFYRLANECAQVLS Sbjct 5055 LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLS 5114 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVCSLMACNGHKIEDLSIR LQ Sbjct 5115 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5174 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYSNVYR D+VD FV+EYYEFL KHFSMMILSDDGVVCYNS++ASKGYIANIS FQQ Sbjct 5175 KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQ 5234 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSE+KCWVE DI GPHEFCSQHTMLVK+DGD VYLPYPDPSRILGAGCFV Sbjct 5235 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5294 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HEN EYQ VFRVYLEYIKKLYNDLGNQILDSYS Sbjct 5295 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYS 5354 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDE+FYKNMYL+SAV+Q Sbjct 5355 VILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 4461 to 5388 Score:1759 bits(4555), Expect:0.0, Method:Compositional matrix adjust., Identities:838/928(90%), Positives:881/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRGTSVNARLVPCASGL TDVQLRAFDICN NRAGIGLYYKVNC RFQR+D Sbjct 4461 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVD 4520 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 ++GNKLDKFFVVKRTNLEVYNKEK YELTK CGVVAEH+FFTFD++GSRVPHIVRK+LS Sbjct 4521 EEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLS 4580 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 K+TMLDLCYALRHFD NDCS L EIL YA+C ESYF KKDWYDFVENPDIIN+YKKLGP Sbjct 4581 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGP 4640 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRALLNT +FADTLV+ GLVGVLTLDNQDLYGQWYDFGDF++T P GVAVADSYYSY Sbjct 4641 IFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSY 4700 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LD ELFVN +YR+FDLVQYDFTD+KLELFNKYFK+W M YHPNT +C++D Sbjct 4701 MMPMLTMCHALDSELFVNGTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSECEDD 4760 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLP TCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN+DVDTHRY Sbjct 4761 RCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRY 4820 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASALLDLRTCCFSVAAITSG+KFQTVKPGNFNQDFYEF+ Sbjct 4821 RLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFIL 4880 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFV+EVV KYFEIY+ Sbjct 4881 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYFEIYE 4940 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPA+QVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4941 GGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 5000 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 5001 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 5060 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVD+PVLMGWDYPKCDRAMPNILRIVSSLVLARKH+ CCSH DRFYRLANECAQVL Sbjct 5061 LIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLG 5120 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVCSLMACNGHKIEDLSIR LQ Sbjct 5121 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQ 5180 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYSNVYR D+VD FV+EYYEFL KHFSM+ILSDDGVVCYNS++ASKGYIANIS FQQ Sbjct 5181 KRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANISDFQQ 5240 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSE+KCWVE DI GPHEFCSQHTMLVK+DGD VYLPYPDPSRILGAGCFV Sbjct 5241 VLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFV 5300 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HEN EYQ VFRVYLEYIKKLYNDLGNQILDS S Sbjct 5301 DDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSIS 5360 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDE+FYKNMYL+SAVMQ Sbjct 5361 VILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 4370 to 5297 Score:1752 bits(4537), Expect:0.0, Method:Compositional matrix adjust., Identities:830/928(89%), Positives:881/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRGTSV+ARLVPCASGLSTDVQLRAFDICN + AGIGL+ KVNCCRFQR+D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 ++G+KLD+FFVVKRT+L +YN+E YE K C VAEHDFFTFD++GSRVPHIVRK+L+ Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDC +LC+IL YA C++SYF+KKDWYDFVENPDIIN+YKKLGP Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRAL++ FAD LV+VGLVG+LTLDNQDL G+WYDFGD++ APG GVA+ADSYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LDCEL+VN++YR FDLVQYDFTDYKLELFNKYFK+W M YHPNTVDC +D Sbjct 4610 MMPMLTMCHALDCELYVNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELG+VMN+DVDTHRY Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASAL DLRTCCFSVAAITSG+KFQTVKPGNFNQDFY+F+ Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHE CCS DRFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVC+LM+CNG+KIEDLSIR LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYS+VYR+D VD TFV EYYEFL KHFSMMILSDDGVVCYNSDYASKGYIANIS FQQ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDI NGPHEFCSQHTMLVK+DGD VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5269 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDESFYKNMYL+SAVMQ Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 4370 to 5297 Score:1751 bits(4535), Expect:0.0, Method:Compositional matrix adjust., Identities:830/928(89%), Positives:881/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRGTSV+ARLVPCASGLSTDVQLRAFDICN + AGIGL+ KVNCCRFQR+D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 ++G+KLD+FFVVKRT+L +YN+E YE K C VAEHDFFTFD++GSRVPHIVRK+L+ Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDC +LC+IL YA C++SYF+KKDWYDFVENPDIIN+YKKLGP Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRAL++ FAD LV+VGLVG+LTLDNQDL G+WYDFGD++ APG GVA+ADSYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LDCEL+VN++YR FDLVQYDFTDYKLELFNKYFK+W M YHPNTVDC +D Sbjct 4610 MMPMLTMCHALDCELYVNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELG+VMN+DVDTHRY Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASAL DLRTCCFSVAAITSG+KFQTVKPGNFNQDFY+F+ Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHE CCS DRFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVC+LM+CNG+KIEDLSIR LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYS+VYR+D VD TFV EYYEFL KHFSMMILSDDGVVCYNSDYASKGYIANIS FQQ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDI NGPHEFCSQHTMLVK+DGD VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 5269 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDESFYKNMYL+SAVMQ Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 4370 to 5297 Score:1745 bits(4519), Expect:0.0, Method:Compositional matrix adjust., Identities:827/928(89%), Positives:880/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRGTSV+ARLVPCASGLSTDVQLRAFDICN + AGIGL+ KVNCCRFQR+D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 ++G+KLD+FFVVKRT+L +YN+E YE K C VAEHDFFTFD++GSRVPHIVRK+L+ Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDC +LC+IL YA C++SYF+KKDWYDFVENPDIIN+YKKLGP Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRAL++ FAD LV+VGLVG+LTLDNQDL G+WYDFGD++ APG GVA+ADSYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LDCEL+VN++YR FDLVQYDFTDYKLELFNKYFK+W M YHPNTVDC +D Sbjct 4610 MMPMLTMCHALDCELYVNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELG+VMN+DVDTHRY Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASAL DLRTCCFSVAAITSG+KFQTVKPGNFNQDFY+F+ Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPA+QVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4850 GGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHE CCS DRFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANECAQVLS 5029 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVC+LM+CNG+KIEDLSIR LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYS+VYR+D VD TFV EYYEFL KHFSMMILSDDGVVCYNSDYASKGYIANIS FQQ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDI NGPHEFCSQHTMLVK+DGD VYLPYP PSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILGAGCFV 5209 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HENEEYQKVFRVYLEYIKKLYN+LGNQILDSYS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS 5269 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDESFYKNMYL+SAVMQ Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 4370 to 5297 Score:1741 bits(4510), Expect:0.0, Method:Compositional matrix adjust., Identities:827/928(89%), Positives:879/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRGTSV+ARLVPCASGLSTDVQLRAFDICN + AGIGL+ KVNCCRFQR+D Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 ++G+KLD+FFVVKRT+L +YN+E YE K C VAEHDFFTFD++GSRVPHIVRK+L+ Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDC +LC+IL YA C++SYF+KKDWYDFVENPDIIN+YKKLGP Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRAL++ FAD LV+VGLVG+LTLDNQDL G+WYDFGD++ APG GVA+ADSYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 MMPMLTMCH LDCEL+VN++YR FDLVQYDFTDYKLELFNKYFK+W M YHPNTVDC +D Sbjct 4610 MMPMLTMCHALDCELYVNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCII CANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELG+VMN+DVDTHRY Sbjct 4670 RCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASAL DLRTCCFSVAAITSG+KFQTVKPGNFNQDFY+F+ Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFIL 4789 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHE CCS DRFYRLANE AQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEYAQVLS 5029 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVC+LM+CNG+KIEDLSIR LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYS+VYR+D VD TFV EYYEFL KHFSMMILSDDGVVCYNSDYASKGYIANIS FQQ Sbjct 5090 KRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVENDI NGPHEFCSQHTMLVK+DGD VYLPYPDPSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILGAGCFV 5209 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HENEEYQKVFRVYLEYIKKLYN+LGNQILDSYS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQILDSYS 5269 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDESFYKNMYL+SAVMQ Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 4370 to 5297 Score:1739 bits(4503), Expect:0.0, Method:Compositional matrix adjust., Identities:826/928(89%), Positives:878/928(94%), Gaps:0/928(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 SKD NFLNRVRG SV+ARLVPCASGLSTDVQLRAFDI N + AGIGL+ KVNCCRFQR+D Sbjct 4370 SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVD 4429 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 ++G+KLD+FFVVKRT+L +YN+E YE K C VAEHDFFTFD++GSRVPHIVRK+L+ Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTMLDLCYALRHFD NDC +LC+IL YA C++SYF+KKDWYDFVENPDIIN+YKKLGP Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 IFNRAL++ FAD LV+VGLVGVLTLDNQDL G+WYDFGD++ APG GVA+ADSYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 241 MMPMLTMCHVLDCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 +MPMLTMCH LDCEL+VN++YR FDLVQYDFTDYKLELFNKYFK+W M YHPNTVDC +D Sbjct 4610 IMPMLTMCHALDCELYVNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTVDCQDD 4669 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELG+VMN+DVDTHRY Sbjct 4670 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDVDTHRY 4729 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLSLKDLLLYAADPA+HVASASAL DLRTCCFSVAAITSG+KFQTVKPGNFNQDFY+FV Sbjct 4730 RLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYDFVL 4789 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKGL KEGS+VDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD Sbjct 4790 SKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 4849 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNL Sbjct 4850 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNL 4909 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR Sbjct 4910 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRR 4969 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHE CCS DRFYRLANECAQVLS Sbjct 4970 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANECAQVLS 5029 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAV+ANVC+LM+CNG+KIEDLSIR LQ Sbjct 5030 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLSIRALQ 5089 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 KRLYS+VYR+D VD TFV EYYEFL KHFSMMILSDDGVVCYNSDYASKGYIANIS FQQ Sbjct 5090 KRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANISAFQQ 5149 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSESKCWVE+DI NGPHEFCSQHTMLVK+DGD VYLPYP+PSRILGAGCFV Sbjct 5150 VLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILGAGCFV 5209 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DDLLKTDSVLLIERFVSLAIDAYPLV+HENEEYQKVFRVYL YIKKLYNDLGNQILDSYS Sbjct 5210 DDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQILDSYS 5269 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 VILSTCDG KFTDESFYKNMYL+SAVMQ Sbjct 5270 VILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 4468 to 5401 Score:1353 bits(3501), Expect:0.0, Method:Compositional matrix adjust., Identities:639/936(68%), Positives:760/936(81%), Gaps:10/936(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 58 SKD NFLNRVRG+ VNAR+ PCASGL+TDV RAFDICN AGIG YYK N CRF Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 59 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 +DD+G++LD FFVVKR +E Y EK Y+L K C VA HDFF FD+D + PHIVR+ Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 178 L++YTM+DL YALRHFD N+C VL IL +Y C SYF K W+DFVENP++I++Y KL Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 179 GPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 238 G +A+LNTV F D +VK GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 239 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 292 SY+MP+L+M + L DC+L ++ L++YD+TDYK+ LF KYFK W +YHP Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDL--TKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHP 4765 Query 293 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 352 N V+C +DRC++HCANFN+LFSM LP T FGP+VR+IFVDGVPFV+S GYHYKELG+VMN Sbjct 4766 NCVNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMN 4825 Query 353 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 412 +DV HR+RLSLK+L++YAADPAMH+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4826 MDVSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFN 4885 Query 413 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 472 +DFY+FV SKG FKEGS+V L+HFFF QDG+AAITDY+YY YNLPTM DIKQ+LF +EVV Sbjct 4886 KDFYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVV 4945 Query 473 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 532 +YFEIYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE+LS++EQ+E++A TKRNVL Sbjct 4946 DRYFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVL 5005 Query 533 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 592 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 5006 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYG 5065 Query 593 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 652 GWD ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC++ DRFYRLA Sbjct 5066 GWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLA 5125 Query 653 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 712 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM NG+ I Sbjct 5126 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIV 5185 Query 713 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 772 D ++++Q LY NVYR D FV+ YY FL KHFSMMILSDDGVVCYNSDYA+KGYI Sbjct 5186 DEEVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYI 5245 Query 773 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 832 A+I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5246 ASIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSR 5305 Query 833 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 892 IL AGCFVDD++KTD L++ERFVSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5306 ILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLT 5365 Query 893 NQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +LDSYSV+L + KF +ESFY+++Y +Q Sbjct 5366 GHMLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 4421 to 5354 Score:1347 bits(3486), Expect:0.0, Method:Compositional matrix adjust., Identities:635/936(68%), Positives:768/936(82%), Gaps:10/936(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 58 SKD NFLNRVRG+SVNARL PC+SGL+TDV RAFDICN AGIG YYK N CRF + Sbjct 4421 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4480 Query 59 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 +DD+G+KLD +F+VKR + Y EK Y+L K C VA HDFF FD+D ++ PHIVR++ Sbjct 4481 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4540 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 178 L++YTM+DL YALRHFD N+C VL IL +Y C++SYF K W+DFVENP +I +Y KL Sbjct 4541 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4600 Query 179 GPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 238 G +A+LNTV D +VK GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4601 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4660 Query 239 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 292 SY+MP+L+M + L DC+ N ++ L++YD+TDYK+ LFNKYFKYW YHP Sbjct 4661 SYLMPVLSMTNCLAAETHKDCDF--NKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHP 4718 Query 293 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 352 N V+C +DRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMN Sbjct 4719 NCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMN 4778 Query 353 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 412 +D + HR+RL+LK+L++YAADPAMH+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4779 MDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFN 4838 Query 413 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 472 +DFY+FV S+G FKEGS+V LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV Sbjct 4839 KDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVV 4898 Query 473 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 532 KYF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNVL Sbjct 4899 DKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVL 4958 Query 533 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 592 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4959 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 5018 Query 593 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 652 GWD ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC++ DRFYRLA Sbjct 5019 GWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLA 5078 Query 653 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 712 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM+ NG+ I Sbjct 5079 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTII 5138 Query 713 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 772 D I+++Q LY NVYR D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGY+ Sbjct 5139 DREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYV 5198 Query 773 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 832 A+I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5199 ASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 5258 Query 833 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 892 IL AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5259 ILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLT 5318 Query 893 NQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5319 GHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 4428 to 5361 Score:1347 bits(3485), Expect:0.0, Method:Compositional matrix adjust., Identities:635/936(68%), Positives:769/936(82%), Gaps:10/936(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 58 SKD NFLNRVRG+SVNARL PC+SGL+TDV RAFDICN AGIG YYK N CRF + Sbjct 4428 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4487 Query 59 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 +DD+G+KLD +F+VKR + Y EK Y+L K C VA HDFF FD+D ++ PHIVR++ Sbjct 4488 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4547 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 178 L++YTM+DL YALRHFD N+C VL IL +Y C++SYF K W+DFVENP +I +Y KL Sbjct 4548 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4607 Query 179 GPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 238 G +A+LNTV D +VK GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4608 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4667 Query 239 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 292 SY+MP+L+M + L DC+ N ++ L++YD+TDYK+ LFNKYFK+W YHP Sbjct 4668 SYLMPVLSMTNCLAAETHKDCDF--NKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHP 4725 Query 293 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 352 N V+C +DRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMN Sbjct 4726 NCVNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMN 4785 Query 353 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 412 +DV+ HR+RL+LK+L++YAADPAMH+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4786 MDVNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFN 4845 Query 413 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 472 +DFY+FV S+G FKEGS+V LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV Sbjct 4846 KDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVV 4905 Query 473 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 532 KYF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNVL Sbjct 4906 DKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVL 4965 Query 533 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 592 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4966 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 5025 Query 593 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 652 GWD ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC++ DRFYRLA Sbjct 5026 GWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLA 5085 Query 653 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 712 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM+ NG+ I Sbjct 5086 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTII 5145 Query 713 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 772 D I+++Q LY NVYR D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGY+ Sbjct 5146 DREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYV 5205 Query 773 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 832 A+I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5206 ASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 5265 Query 833 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 892 IL AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5266 ILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLT 5325 Query 893 NQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5326 GHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 4378 to 5310 Score:1340 bits(3467), Expect:0.0, Method:Compositional matrix adjust., Identities:636/936(68%), Positives:753/936(80%), Gaps:11/936(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 58 SKD NFL RVRG+ VNAR+ PC+SGLSTDV RAFDICN AGIG YYK N CRF Sbjct 4378 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4437 Query 59 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 +DD G+ LD +FVVKR +E Y EK Y+L + C VA HDFF FD+D + PHIVR+ Sbjct 4438 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 4497 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 178 L++YTM+DL YALRHFD N VL IL +Y C +YF K W+DFVENP +I +Y KL Sbjct 4498 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 4556 Query 179 GPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 238 G +A+LNTV F D +VK GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4557 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 4616 Query 239 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 292 SY+MP+L+M L DC+ N ++ L +YDFTDYK++LF KYFKYW YH Sbjct 4617 SYLMPVLSMTDCLAAETHRDCDF--NKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHA 4674 Query 293 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 352 N V+C +DRC++HCANFN+LF+M +P TCFGP+VR+IFVDGVPFVVS GYHYKELG+VMN Sbjct 4675 NCVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMN 4734 Query 353 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 412 +DV HR+RLSLK+L++YAADPAMH+AS++A LDLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4735 MDVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFN 4794 Query 413 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 472 QDFY+FV SKG FKEGS+V LKHFFF QDGNAAITDYNYY YNLPTM DIKQ+LF +EVV Sbjct 4795 QDFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVV 4854 Query 473 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 532 KYFEIYDGGC+ AS+V+VNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNV+ Sbjct 4855 NKYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVI 4914 Query 533 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 592 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4915 PTMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 4974 Query 593 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 652 GWD ML+ L KDVDNP LMGWDYPKCDRAMPN+ RI +SL+LARKH CC+ DRFYRLA Sbjct 4975 GWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLA 5034 Query 653 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 712 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM NG+KI Sbjct 5035 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIV 5094 Query 713 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 772 D ++++Q LY NVYR+ D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGYI Sbjct 5095 DKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYI 5154 Query 773 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 832 A I F++ LYYQNNVFMSE+KCWVE D+ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5155 AGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 5214 Query 833 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 892 IL AGCFVDD++KTD L++ERFVSLAIDAYPL HE+ EYQ VF VYL+YI+KLY DL Sbjct 5215 ILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLT 5274 Query 893 NQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +LDSYSV+L + KF +E+FY+++Y +Q Sbjct 5275 GHMLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 4234 to 5165 Score:1311 bits(3394), Expect:0.0, Method:Compositional matrix adjust., Identities:618/932(66%), Positives:747/932(80%), Gaps:4/932(0%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 ++D FLNRVRGTS ARLVP SG+ D+ LRAFDICNT AG GL+ K NCCR+Q +D Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD 4293 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 DG +LD +FVVKR Y E+ YE K CGVVA HDFF F+I+G PH+ R+ L+ Sbjct 4294 ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT 4353 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTM DL Y+LRHFD N+C L EIL C YF +KDWYD VENPDII +Y LG Sbjct 4354 KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE 4413 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 +A+L+ V AD++V+ GL+GVLTLDNQDL GQWYDFGDFI+ G GVAV D+YYS Sbjct 4414 TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL 4473 Query 241 MMPMLTMCHVLDCELFVNDSY----RQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVD 296 MP+ TM ++L E V+ + R +D+ +YD+T +K LF+KYFKYW M+YHPN V Sbjct 4474 AMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCVA 4533 Query 297 CDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVD 356 C +DRCI+HCANFNILFSMVLPNT FGPLV++I+VDGVPFVVS GYHY+ELGVVMN D+ Sbjct 4534 CADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDIR 4593 Query 357 THRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFY 416 H RLSL++LL+YAADPAMHVA+++AL D RT C SVAA+T+G+ FQTVKPG FN+DFY Sbjct 4594 QHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDFY 4653 Query 417 EFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF 476 F G FKEGST+ KHFF+ QDGNAAI+DY+YY+YNLPTM DIKQLLF LEVV KYF Sbjct 4654 NFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKYF 4713 Query 477 EIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLT 536 + YDGGC+ ASQV+V NYDKSAG+PFNKFGKARLYYE+LS+ +Q+E++AYTKRNVLPT+T Sbjct 4714 DCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTIT 4773 Query 537 QMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDD 596 QMNLKYAISAKNRARTVAGVSI STMT R FHQK LKSIAA RG VVIGTTKFYGGW+ Sbjct 4774 QMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWNR 4833 Query 597 MLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECA 656 MLR L + V+NP LMGWDYPKCDRAMPN+LRI +SL+LARKH CC+ +RFYRLANECA Sbjct 4834 MLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANECA 4893 Query 657 QVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSI 716 QVLSE+V+CGG +YVKPGGTSSGD+TTA+ANSVFNICQAV+AN+ + ++ +G+KI + Sbjct 4894 QVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTYV 4953 Query 717 RNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANIS 776 + LQ+RLY +YR++ VD V +YY +L KHFSMMILSDDGVVCYN+DYA KGY+A+I Sbjct 4954 QELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADIQ 5013 Query 777 VFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 836 F+++LY+QNNVFMSESKCWVE DIT GPHEFCSQHTMLV + G+ VYLPYPDPSRILGA Sbjct 5014 GFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILGA 5073 Query 837 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQIL 896 GCFVDDLLKTD L++ER+VSLAIDAYPL H + EYQ VF YL+YIKKL+ +L +L Sbjct 5074 GCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHLL 5133 Query 897 DSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 D+YSV+L++ + K+ + FY+NMY++SA +Q Sbjct 5134 DTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like protease; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 4398 to 5324 Score:1304 bits(3374), Expect:0.0, Method:Compositional matrix adjust., Identities:622/928(67%), Positives:735/928(79%), Gaps:5/928(0%) Query 5 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 64 +FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D+D N Sbjct 4398 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDN 4456 Query 65 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTM 124 +D +FVVKR Y E+T Y L K C VA+HDFF F IDG VPHI R+ L+KYTM Sbjct 4457 LIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTM 4516 Query 125 LDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4517 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 4576 Query 185 ALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDFIQT PG GV V DSYYS +MP+ Sbjct 4577 ALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPI 4636 Query 245 LTMCHVLDCELFVN----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 LT+ L E V+ Y ++DL++YDFT+ +L+LF++YFKYW YHPN V+C +D Sbjct 4637 LTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 4696 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4697 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 4756 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4757 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 4816 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4817 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 4876 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4877 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 4936 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4937 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 4996 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 + DV+NP LMGWDYPKCDRAMPN+LRI++SLVLARKH CCS RFYRLANECAQVLS Sbjct 4997 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 5056 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5057 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 5116 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 RLY +YR VD FVNE+Y +L KHFSMMILSDD VVC+NS YAS+G +A+I F+ Sbjct 5117 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 5176 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5177 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 5236 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5237 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 5296 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 V+L+ + ++ + FY+ MY V+Q Sbjct 5297 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 4369 to 5295 Score:1296 bits(3354), Expect:0.0, Method:Compositional matrix adjust., Identities:613/928(66%), Positives:736/928(79%), Gaps:5/928(0%) Query 5 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 64 FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D++GN Sbjct 4369 TFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGN 4427 Query 65 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTM 124 LD +FVVKR + Y E+T Y L K C VA HDFF F +DG VPHI R+ L+KYTM Sbjct 4428 LLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTM 4487 Query 125 LDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 184 DL YALRHFD +C L EIL Y C ++YF+KKDWYDFVENPD++ +Y LG R Sbjct 4488 ADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGERVRR 4547 Query 185 ALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDF+Q APG GV + DSYYS +MP+ Sbjct 4548 ALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPI 4607 Query 245 LTMCHVLDCELFVNDSYRQ----FDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 LT+ L E ++ + +DL++YDFT+ +L LF++YFKYW YHPN ++C +D Sbjct 4608 LTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDD 4667 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4668 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 4727 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4728 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 4787 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4788 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 4847 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4848 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 4907 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4908 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 4967 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 + DV++P LMGWDYPKCDRAMPN+LRI++SL+LARKH CC+ RFYRLANECAQVLS Sbjct 4968 VYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECAQVLS 5027 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5028 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 5087 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 RLY +YR VD+ FV+E+Y +L KHFSMMILSDD VVCYNS+YA++G +A+I F+ Sbjct 5088 HRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKA 5147 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 VLYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5148 VLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 5207 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5208 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 5267 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 V+L+ + ++ + FY+ MY V+Q Sbjct 5268 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 4374 to 5299 Score:1294 bits(3348), Expect:0.0, Method:Compositional matrix adjust., Identities:614/927(66%), Positives:733/927(79%), Gaps:5/927(0%) Query 6 FLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGNK 65 FLNRV G S ARL PC +G+STDV RAFDI N AG + K NCCRFQ D++GN Sbjct 4374 FLNRVCGVSA-ARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNL 4432 Query 66 LDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTML 125 LD +FVVKR + Y E+T Y L K C VA HDFF F +DG VPHI R+ L+KYTM Sbjct 4433 LDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMA 4492 Query 126 DLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNRA 185 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG +A Sbjct 4493 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA 4552 Query 186 LLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPML 245 LL TV F D + G+VGVLTLDNQDL G WYDFGDF+Q APG GV + DSYYS +MP+L Sbjct 4553 LLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPIL 4612 Query 246 TMCHVLDCELFVNDSYRQ----FDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDNDR 301 T+ L E ++ + +DL++YDFT +L LF++YFKYW YHPN ++C +DR Sbjct 4613 TLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCINCLDDR 4672 Query 302 CIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRYR 361 CI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H R Sbjct 4673 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 4732 Query 362 LSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVKS 421 LS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F S Sbjct 4733 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 4792 Query 422 KGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDG 481 KG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YDG Sbjct 4793 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 4852 Query 482 GCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLK 541 GCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNLK Sbjct 4853 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK 4912 Query 542 YAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHL 601 YAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + Sbjct 4913 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 4972 Query 602 IKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSE 661 DV+ P LMGWDYPKCDRAMPN+LRI++SLVLARKH CC+ RFYRLANECAQVLSE Sbjct 4973 YSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLSE 5032 Query 662 IVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQK 721 +VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5033 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 5092 Query 722 RLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQV 781 RLY +YR VD+ FV E+Y +L KHFSMMILSDD VVCYNS+YA++G +A+I F+ V Sbjct 5093 RLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 5152 Query 782 LYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVD 841 LYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFVD Sbjct 5153 LYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 5212 Query 842 DLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYSV 901 D++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YSV Sbjct 5213 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 5272 Query 902 ILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L+ + ++ + FY+ MY V+Q Sbjct 5273 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 4376 to 5301 Score:1293 bits(3347), Expect:0.0, Method:Compositional matrix adjust., Identities:613/927(66%), Positives:734/927(79%), Gaps:5/927(0%) Query 6 FLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGNK 65 FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D++GN Sbjct 4376 FLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNL 4434 Query 66 LDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTML 125 LD +FVVKR + Y E+T Y L K C VA HDFF F +DG VPHI R+ L+KYTM Sbjct 4435 LDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMA 4494 Query 126 DLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNRA 185 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG ++ Sbjct 4495 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQS 4554 Query 186 LLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPML 245 LL TV F D + G+VGVLTLDNQDL G WYDFGDF+Q APG GV + DSYYS +MP+L Sbjct 4555 LLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPIL 4614 Query 246 TMCHVLDCELFVNDSYRQ----FDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDNDR 301 T+ L E ++ + +DL++YDFT+ +L LF++YFKYW YHPN ++C +DR Sbjct 4615 TLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDR 4674 Query 302 CIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRYR 361 CI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H R Sbjct 4675 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 4734 Query 362 LSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVKS 421 LS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F S Sbjct 4735 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 4794 Query 422 KGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDG 481 KG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YDG Sbjct 4795 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 4854 Query 482 GCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLK 541 GCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNLK Sbjct 4855 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK 4914 Query 542 YAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHL 601 YAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + Sbjct 4915 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 4974 Query 602 IKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSE 661 DV+ P LMGWDYPKCDRAMPN+LRI++SLVLARKH CC+ RFYRLANECAQVLSE Sbjct 4975 YSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSE 5034 Query 662 IVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQK 721 +VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5035 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 5094 Query 722 RLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQV 781 RLY +YR VD+ FV+E+Y +L KHFSMMILSDD VVCYNS+YA++G +A+I F+ V Sbjct 5095 RLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 5154 Query 782 LYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVD 841 LYYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFVD Sbjct 5155 LYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 5214 Query 842 DLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYSV 901 D++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YSV Sbjct 5215 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 5274 Query 902 ILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L+ + ++ + FY+ MY V+Q Sbjct 5275 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 4381 to 5307 Score:1292 bits(3343), Expect:0.0, Method:Compositional matrix adjust., Identities:613/928(66%), Positives:733/928(78%), Gaps:5/928(0%) Query 5 NFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDDGN 64 FLNRV G S ARL PC +G STDV RAFDI N AG + K NCCRFQ D++GN Sbjct 4381 TFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKDEEGN 4439 Query 65 KLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKYTM 124 LD +FVVKR + Y E+T Y L K C VA HDFF F +DG VPHI R+ L+KYTM Sbjct 4440 LLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTM 4499 Query 125 LDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIFNR 184 DL YALRHFD +C L EIL Y C + YF+KKDWYDFVENPDI+ +Y LG + Sbjct 4500 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 4559 Query 185 ALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMMPM 244 ALL TV F D + G+VGVLTLDNQDL G WYDFGDF+Q APG GV + DSYYS +MP+ Sbjct 4560 ALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPI 4619 Query 245 LTMCHVLDCELFVNDSYRQ----FDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDCDND 300 LT+ L E ++ + +DL++YDFT+ +L LF++YFKYW YHPN ++C +D Sbjct 4620 LTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDD 4679 Query 301 RCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDTHRY 360 RCI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H Sbjct 4680 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 4739 Query 361 RLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYEFVK 420 RLS K+LL+YAADPAMH AS + LLD RT CFSVAA+T+ + FQTVKPGNFN+DFY+F Sbjct 4740 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 4799 Query 421 SKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYD 480 SKG FKEGS+V+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV KYF+ YD Sbjct 4800 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 4859 Query 481 GGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNL 540 GGCI A+QVIVNN DKSAG+PFNK+GKARLYY+++S+E+Q+ ++AYTKRNV+PT+TQMNL Sbjct 4860 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQMNL 4919 Query 541 KYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRH 600 KYAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ Sbjct 4920 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 4979 Query 601 LIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLS 660 + DV+ P LMGWDYPKCDRAMPN+LRI++SLVLARKH CC+ RFYRLANECAQVLS Sbjct 4980 VYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLS 5039 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQ 720 E+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAVTANV +L++ +G+KI D +RNLQ Sbjct 5040 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 5099 Query 721 KRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQ 780 RLY +YR VD+ FV+E+Y +L KHFSMMILSDD VVCYNS+YA++G +A+I F+ Sbjct 5100 HRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKA 5159 Query 781 VLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFV 840 V YYQNNVFMSE+KCW E D+T GPHEFCSQHTMLVK DYVYLPYPDPSRILGAGCFV Sbjct 5160 VHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 5219 Query 841 DDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYS 900 DD++KTD L+IERFVSLAIDAYPL H N+EY VF +YL+YI+KL+++L +LD YS Sbjct 5220 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 5279 Query 901 VILSTCDGLKFTDESFYKNMYLKSAVMQ 928 V+L+ + ++ + FY+ MY V+Q Sbjct 5280 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 3937 to 4868 Score:1158 bits(2996), Expect:0.0, Method:Compositional matrix adjust., Identities:574/939(61%), Positives:702/939(74%), Gaps:20/939(2%) Query 3 DLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDD- 61 D N+LNRVRG+S ARL+P ASG DV RAFD+CN AG+ K NC RFQ + D Sbjct 3937 DKNYLNRVRGSS-EARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDT 3995 Query 62 -DGNK--LDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 DGN LD +FVVK+T Y EK+ YE KS V A+HDFF F+ + +I R+ Sbjct 3996 EDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFN---KNIYNISRQR 4051 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSK-----KDWYDFVENPDIIN 173 L+KYTM+D CYALRHFD DC VL EIL Y C E Y K KDWYD +EN Sbjct 4052 LTKYTMMDFCYALRHFDPKDCEVLKEILVTYG-CIEDYHPKWFEENKDWYDPIENSKYYV 4110 Query 174 IYKKLGPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAV 233 + K+GPI RALLN + F + +V+ G VGV+TLDNQDL G++YDFGDF +TAPG GV V Sbjct 4111 MLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPV 4170 Query 234 ADSYYSYMMPMLTMCHVLDCELF----VNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMK 289 D+YYSYMMP++ M L E + V+ Y+ +DL++YD+T+ K ELF KYFKYW + Sbjct 4171 FDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQE 4230 Query 290 YHPNTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGV 349 YHPN DC +DRC+IHCANFNILFS ++P T FG L R++FVDGVPF+ + GYH KELGV Sbjct 4231 YHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGV 4290 Query 350 VMNLDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPG 409 +MN D ++ L L+ + DPA+ V +++ L+DLRT CFSV A+TSGI QTVKPG Sbjct 4291 IMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPG 4350 Query 410 NFNQDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVL 469 +FN+DFY+F + G+FKEGS++ LKHFF+ Q GNAAI DY+YY+YN PTM DI QLLF L Sbjct 4351 HFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCL 4410 Query 470 EVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKR 529 EV KYFE Y+GGCIPASQV+VNN DKSAGYPFNKFGKARLYYE +S EEQ++++ TK+ Sbjct 4411 EVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKK 4469 Query 530 NVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTK 589 NVLPT+TQMNLKYAISAKNRARTVAGVSILSTMT R FHQK LKSI TR VVIGTTK Sbjct 4470 NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTK 4529 Query 590 FYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFY 649 FYGGWD+MLR+LI+ V++P+LMGWDYPKCDRAMPN+LRI +SLVLARKH CCS +R Y Sbjct 4530 FYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIY 4589 Query 650 RLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGH 709 RL NECAQVLSE V+ G YVKPGGTSSGDATTA+ANSVFNI QA +ANV L++ Sbjct 4590 RLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITR 4649 Query 710 KIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASK 769 I +I++LQ LY VYR D FV ++Y +LCK+FS+MILSDDGVVCYN+ A + Sbjct 4650 DIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQ 4709 Query 770 GYIANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPD 829 G +A+IS F++VLYYQNNVFM++SKCWVE D+ GPHEFCSQHTMLV++DG+ YLPYPD Sbjct 4710 GLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPD 4769 Query 830 PSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYN 889 PSRILGA FVDD+ KT+ V ++ER+++LAIDAYPLVHHENEEY+KVF V L YI+KLY Sbjct 4770 PSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQ 4829 Query 890 DLGNQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L +L YS ++ G KF ++ FY+NMY +Q Sbjct 4830 ELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 3939 to 4870 Score:1158 bits(2996), Expect:0.0, Method:Compositional matrix adjust., Identities:572/939(61%), Positives:701/939(74%), Gaps:20/939(2%) Query 3 DLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDD- 61 D N+LNRVRG+S ARL+P A+G DV RAFD+CN AG+ K NC RFQ + D Sbjct 3939 DKNYLNRVRGSS-EARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVRDT 3997 Query 62 -DGNK--LDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 DGN D +FVVK+T Y EK YE KS V A+HDFF F+ + +I R+ Sbjct 3998 EDGNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFN---KNIYNISRQR 4053 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSK-----KDWYDFVENPDIIN 173 L+KYTM+D CYALRHFD DC VL EIL Y C E Y K KDWYD +ENP Sbjct 4054 LTKYTMMDFCYALRHFDPKDCEVLKEILVTYG-CIEDYHPKWFEENKDWYDPIENPKYYA 4112 Query 174 IYKKLGPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAV 233 + K+GPI RALLN + F + +V+ G VGV+TLDNQDL G++YDFGDF +TAPG GV V Sbjct 4113 MLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPV 4172 Query 234 ADSYYSYMMPMLTMCHVLDCELF----VNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMK 289 D+YYSYMMP++ M L E + V+ Y+ +DL++YD+T+ K +LF KYFKYW + Sbjct 4173 FDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQE 4232 Query 290 YHPNTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGV 349 YHPN DC +DRC+IHCANFNILFS ++P T FG L R++FVDGVPF+ + GYH KELGV Sbjct 4233 YHPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELGV 4292 Query 350 VMNLDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPG 409 +MN D ++ L L+ + DPA+ V +++ L+DLRT CFSV A+ SGI QTVKPG Sbjct 4293 IMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKPG 4352 Query 410 NFNQDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVL 469 +FN+DFY+F + G+FKEGS++ LKHFF+ Q GNAAI DY+YY+YN PTM DI+QLLF L Sbjct 4353 HFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFCL 4412 Query 470 EVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKR 529 EV KYFE Y+GGCIPASQV+VNN DKSAGYPFNKFGKARLYYE +S EEQ++++ TK+ Sbjct 4413 EVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTKK 4471 Query 530 NVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTK 589 NVLPT+TQMNLKYAISAKNRARTVAGVSILSTMT R FHQK LKSI TR PVVIGTTK Sbjct 4472 NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTTK 4531 Query 590 FYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFY 649 FYGGWD+MLR+LI+ V++P+LMGWDYPKCDRAMPN+LRI +SLVLARKH CC+ +R Y Sbjct 4532 FYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERVY 4591 Query 650 RLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGH 709 RL NECAQVLSE V+ G YVKPGGTSSGDATTA+ANSVFNI QA +ANV L++ Sbjct 4592 RLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITR 4651 Query 710 KIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASK 769 I I++LQ LY VYR D FV ++Y +LCK+FS+MILSDDGVVCYN+ A + Sbjct 4652 DIVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQ 4711 Query 770 GYIANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPD 829 G +A+IS F++VLYYQNNVFM++SKCWVE D+ GPHEFCSQHTMLV++DG+ YLPYPD Sbjct 4712 GLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYPD 4771 Query 830 PSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYN 889 PSRIL A FVDDL KT+SV ++ER+++LAIDAYPLVHHENEEY+KVF V L YI+KLY Sbjct 4772 PSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLYQ 4831 Query 890 DLGNQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L +L YS ++ G KF ++ FY+NMY +Q Sbjct 4832 ELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 3937 to 4868 Score:1158 bits(2995), Expect:0.0, Method:Compositional matrix adjust., Identities:574/939(61%), Positives:702/939(74%), Gaps:20/939(2%) Query 3 DLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDD- 61 D N+LNRVRG+S ARL+P ASG DV RAFD+CN AG+ K NC RFQ + D Sbjct 3937 DKNYLNRVRGSS-EARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDT 3995 Query 62 -DGNK--LDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 118 DGN LD +FVVK+T Y EK+ YE KS V A+HDFF F+ + +I R+ Sbjct 3996 EDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFN---KNIYNISRQR 4051 Query 119 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSK-----KDWYDFVENPDIIN 173 L+KYTM+D CYALRHFD DC VL EIL Y C E Y K KDWYD +EN Sbjct 4052 LTKYTMMDFCYALRHFDPKDCEVLKEILVTYG-CIEDYHPKWFEENKDWYDPIENSKYYV 4110 Query 174 IYKKLGPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAV 233 + K+GPI RALLN + F + +V+ G VGV+TLDNQDL G++YDFGDF +TAPG GV V Sbjct 4111 MLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPV 4170 Query 234 ADSYYSYMMPMLTMCHVLDCELF----VNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMK 289 D+YYSYMMP++ M L E + V+ Y+ +DL++YD+T+ K ELF KYFKYW + Sbjct 4171 FDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQE 4230 Query 290 YHPNTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGV 349 YHPN DC +DRC+IHCANFNILFS ++P T FG L R++FVDGVPF+ + GYH KELGV Sbjct 4231 YHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGV 4290 Query 350 VMNLDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPG 409 +MN D ++ L L+ + DPA+ V +++ L+DLRT CFSV A+TSGI QTVKPG Sbjct 4291 IMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPG 4350 Query 410 NFNQDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVL 469 +FN+DFY+F + G+FKEGS++ LKHFF+ Q GNAAI DY+YY+YN PTM DI QLLF L Sbjct 4351 HFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCL 4410 Query 470 EVVYKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKR 529 EV KYFE Y+GGCIPASQV+VNN DKSAGYPFNKFGKARLYYE +S EEQ++++ TK+ Sbjct 4411 EVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKK 4469 Query 530 NVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTK 589 NVLPT+TQMNLKYAISAKNRARTVAGVSILSTMT R FHQK LKSI TR VVIGTTK Sbjct 4470 NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTK 4529 Query 590 FYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFY 649 FYGGWD+MLR+LI+ V++P+LMGWDYPKCDRAMPN+LRI +SLVLARKH CCS +R Y Sbjct 4530 FYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIY 4589 Query 650 RLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGH 709 RL NECAQVLSE V+ G YVKPGGTSSGDATTA+ANSVFNI QA +ANV L++ Sbjct 4590 RLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITR 4649 Query 710 KIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASK 769 I +I++LQ LY VYR D FV ++Y +LCK+FS+MILSDDGVVCYN+ A + Sbjct 4650 DIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQ 4709 Query 770 GYIANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPD 829 G +A+IS F++VLYYQNNVFM++SKCWVE D+ GPHEFCSQHTMLV++DG+ YLPYPD Sbjct 4710 GLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYPD 4769 Query 830 PSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYN 889 PSRILGA FVDD+ KT+ V ++ER+++LAIDAYPLVHHENEEY+KVF V L YI+KLY Sbjct 4770 PSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLYQ 4829 Query 890 DLGNQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L +L YS ++ G KF ++ FY+NMY +Q Sbjct 4830 ELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 4101 to 5027 Score:1128 bits(2917), Expect:0.0, Method:Compositional matrix adjust., Identities:544/934(58%), Positives:704/934(75%), Gaps:13/934(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 S D+ +LNRVRG+S ARL PC +G T RAFDI N + A +G + KVNC R + +D Sbjct 4101 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 4158 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 K D F+VVKR E++ Y + CG +AEHDFFT+ + ++ RK+L+ Sbjct 4159 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 4214 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 +YTM+DLCYALR+FD N+C VL IL + C+ESYF+ K W+D VEN DI +Y LG Sbjct 4215 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 4274 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 I RA+L V F D +V+ G+VGV+TLDNQDL G +YDFGDF + G GV + SYYSY Sbjct 4275 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 4334 Query 241 MMPMLTMCHVLDCELFV-----NDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTV 295 MMP++ M + L E FV + ++ +DL++YDFT++K LFNKYFKYWG++YHPN V Sbjct 4335 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 4394 Query 296 DCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDV 355 DC +++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4395 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 4454 Query 356 DTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDF 415 + H RLS+ +LL + +DPA+ +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4455 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 4514 Query 416 YEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 475 Y+F+ +G F EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4515 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 4574 Query 476 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTL 535 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQ+E+YAYTKRN+LPT+ Sbjct 4575 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 4634 Query 536 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 595 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4635 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 4694 Query 596 DMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANEC 655 +ML++LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS DRF+RL NE Sbjct 4695 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 4754 Query 656 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLS 715 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAV+ANV L++ + + +L Sbjct 4755 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 4814 Query 716 IRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANI 775 ++ LQ++LY YR+ VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 4815 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 4874 Query 776 SVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRIL 834 + F+ VLYYQNNVFMS SKCW+E DI GPHEFCSQHTM +V +G Y YLPYPDPSRIL Sbjct 4875 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTY-YLPYPDPSRIL 4933 Query 835 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQ 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L Sbjct 4934 SAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAG 4993 Query 895 ILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L+S+SV L KF DESFY NMY KSAV+Q Sbjct 4994 VLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 4003 to 4927 Score:1115 bits(2885), Expect:0.0, Method:Compositional matrix adjust., Identities:546/932(59%), Positives:693/932(74%), Gaps:13/932(1%) Query 3 DLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDD 62 D ++LNRVRG+S ARL PC +G D RAFDI N + A IG + K NC RF+ +D Sbjct 4003 DQSYLNRVRGSSA-ARLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLD-- 4058 Query 63 GNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKY 122 K D +++VKR V + E+ Y K G VAEHDFFT+ ++ R+NL+KY Sbjct 4059 --KHDAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKY 4116 Query 123 TMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIF 182 TM+DLCYA+R+FD +C VL EIL C E +F KDW+D VEN I +Y KLGPI Sbjct 4117 TMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIV 4176 Query 183 NRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMM 242 A+L V+F D +V+ G +GV+TLDNQDL G +YDFGDF++TAPGFG A SYYSYMM Sbjct 4177 ANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMM 4236 Query 243 PMLTMCHVLDCELFV-----NDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDC 297 P++ M L+ E FV Y+Q+DL+ YDFT++K LF KYFKYW YHPN DC Sbjct 4237 PLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDC 4296 Query 298 DNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDT 357 +D CIIHCANFN LFSM +P T FGPLVR++ +DGVP VV+ GYH+K+LG+V NLDV Sbjct 4297 TSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKL 4356 Query 358 HRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYE 417 +LS+ DLL + DP + VAS+ ALLD RT CFS+AA+++GI +QTVKPG+FN+DFY+ Sbjct 4357 DTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYD 4416 Query 418 FVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFE 477 F+ +G F+EGS + LKHFFF Q G AA+TD+NYY+YN T++DI Q FV ++V KYFE Sbjct 4417 FITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFE 4476 Query 478 IYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQ 537 YDGGCI A +V+V NYDKSAGYP NKFGKARLYYE LS+EEQ+ ++A TKRNVLPT+TQ Sbjct 4477 CYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQ 4536 Query 538 MNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDM 597 MNLKYAIS K RARTV GVS+LSTMT R +HQK LKSIAATR VVIG+TKFYGGWD+M Sbjct 4537 MNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNM 4596 Query 598 LRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQ 657 L++L++DVDN LMGWDYPKCDRA+PN++R+ S+++L KH CC+H DRFYRL+NE AQ Sbjct 4597 LKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQ 4656 Query 658 VLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIR 717 VL+E+V C G +Y KPGGT+SGD TTA+ANS FNI QAV+ANV L+ + + +++++ Sbjct 4657 VLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVK 4716 Query 718 NLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISV 777 ++Q+++Y N YR+ +D FV EY+ +L KHFSMMILSDDGVVCYN DYA GY+A+I+ Sbjct 4717 SIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINA 4776 Query 778 FQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRILGA 836 F+ LYYQNNVFMS SKCWVE D++ GPHEFCSQHT+ +V DGDY YLPYPDPSRIL A Sbjct 4777 FKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDY-YLPYPDPSRILSA 4835 Query 837 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQIL 896 G FVDD++KTD+V+++ER+VSLAIDAYPL H YQKVF L+++K L +L +L Sbjct 4836 GVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVL 4895 Query 897 DSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 DS+SV + KF E FY ++Y KS V+Q Sbjct 4896 DSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 4112 to 5038 Score:1112 bits(2876), Expect:0.0, Method:Compositional matrix adjust., Identities:533/934(57%), Positives:701/934(75%), Gaps:13/934(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 S D +LNRVRG+S ARL P +G T RAFD+ N + A I + KVNC R + +D Sbjct 4112 SVDSGYLNRVRGSSA-ARLEP-LNGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLD 4169 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 K D F++VK+ V E++ Y L CG VA+HDFFT+ S ++ R++L+ Sbjct 4170 ----KHDAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLT 4225 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 +YTM+DLCYALR+FD N+C L +IL C ESYF K W+D VEN D+ +Y KLG Sbjct 4226 EYTMMDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGT 4285 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 I RA+L V + D +V+ G+VGV+TLDNQDL G +YDFGDF+ + G GV + SYYSY Sbjct 4286 IVARAMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSY 4345 Query 241 MMPMLTMCHVLDCELFV-----NDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTV 295 MMP++ M + L E F+ + +R FDL+ YDFT++K+ LFNKYFK+WG YHPN Sbjct 4346 MMPVMGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCE 4405 Query 296 DCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDV 355 DC ++ CI+HCANFN LF+ +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4406 DCHDESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDL 4465 Query 356 DTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDF 415 + H RL++ +LL + ADP++ +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4466 NLHSSRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREF 4525 Query 416 YEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 475 Y+F++S+G F+EGS + LKHFFF Q G+AA+ D++YY+YN T++DI Q V ++V Y Sbjct 4526 YDFLRSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCY 4585 Query 476 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTL 535 F +Y+GGCI A +VIVNN +KSAGYPFNKFGKA LYY++LS+EEQ+++YAYTKRN++PT+ Sbjct 4586 FGMYEGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTM 4645 Query 536 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 595 TQ+NLKYAIS K+RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4646 TQLNLKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 4705 Query 596 DMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANEC 655 +ML+ LIKDV+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS DR+YRL NE Sbjct 4706 NMLKTLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNEL 4765 Query 656 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLS 715 AQVL+E+V G +YVKPGGT+SGDATTA+ANSVFNI QA +ANV L++ + + ++ Sbjct 4766 AQVLTEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIE 4825 Query 716 IRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANI 775 ++ LQ++LY YR+ VD +FV EY+ +L KHFSMMILSDDGVVCYNS+YA+ GY+A++ Sbjct 4826 VKQLQRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADL 4885 Query 776 SVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRIL 834 + F+ VLYYQNNVFMS SKCW+E DI GPHEFCSQHTM +V DG Y YLPYPDPSRIL Sbjct 4886 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTY-YLPYPDPSRIL 4944 Query 835 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQ 894 AG FVDD++KTD V+L+ER+VSLAIDAYPL H+N EY++VF V L+++K LY L Sbjct 4945 SAGVFVDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQG 5004 Query 895 ILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +LDS+SV L KF DESFY +MY +S+V+Q Sbjct 5005 VLDSFSVTLLEDATAKFWDESFYASMYEQSSVLQ 5038 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 4028 to 4952 Score:1103 bits(2852), Expect:0.0, Method:Compositional matrix adjust., Identities:539/932(58%), Positives:690/932(74%), Gaps:13/932(1%) Query 3 DLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRIDDD 62 D ++LN G V L PC +G D RAFDI N + A IG + K NC RF+ +D Sbjct 4028 DQSYLNEC-GVLVQLDLEPC-NGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLD-- 4083 Query 63 GNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLSKY 122 K D ++VVKR V + E+ Y K GVVAEHDFF + ++ RK+L+KY Sbjct 4084 --KHDAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKY 4141 Query 123 TMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGPIF 182 TM+DLCYA+R+FD +C VL EIL C ES+F KDW+D VEN I +Y +LGPI Sbjct 4142 TMMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIV 4201 Query 183 NRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSYMM 242 A+L V+F D +V+ G +G++TLDNQDL G +YDFGDF++T PGFG A SYYSYMM Sbjct 4202 ANAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMM 4261 Query 243 PMLTMCHVLDCELFVNDS-----YRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTVDC 297 P++ M L+ E FV Y+Q+DL+ YDFTD+K +LF+KYFK+W YHPN DC Sbjct 4262 PLMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDC 4321 Query 298 DNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDVDT 357 +D CIIHCANFN LFSM +P+T FGPLVR++ +DGVP VV+ GYH+K+LG+V NLDV Sbjct 4322 TSDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKL 4381 Query 358 HRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDFYE 417 +LS+ DLL + DP + VAS+ ALLD RT CFS+AA+++G+ +QTVKPG+FN+DFY+ Sbjct 4382 DTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYD 4441 Query 418 FVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFE 477 F+ +G F+EGS + LKHFFF Q G AA+TD+NYY+YN T++DI Q FV ++V KYFE Sbjct 4442 FITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFE 4501 Query 478 IYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQ 537 YDGGCI A +V+V NYDKSAGYP NKFGKARLYYE LS+EEQ+ ++A TKRNVLPT+TQ Sbjct 4502 CYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQ 4561 Query 538 MNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDM 597 MNLKYAIS K RARTV GVS+LSTMT R +HQK LKSIAATR VVIG+TKFYGGWD+M Sbjct 4562 MNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNM 4621 Query 598 LRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQ 657 L++L++DVDN LMGWDYPKCDRA+PN++R+ S+++L KH CC+H DRFYRL+NE AQ Sbjct 4622 LKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQ 4681 Query 658 VLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIR 717 VL+E+V C G +Y KPGGT+SGD TTA+ANS FNI QAV+ANV L+ + + +++++ Sbjct 4682 VLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVK 4741 Query 718 NLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISV 777 ++Q+++Y N YR+ +D FV EY+ +L KHFSMMILSDDGVVCYN DYA GY+A+I+ Sbjct 4742 SIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINA 4801 Query 778 FQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRILGA 836 F+ LYYQNNVFMS SKCWVE D++ GPHEFCSQHT+ +V DGDY YLPYPDPSRIL A Sbjct 4802 FKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDY-YLPYPDPSRILSA 4860 Query 837 GCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQIL 896 G FVDD++KTD+V+++ER+VSLAIDAYPL H YQKVF L+++K L +L +L Sbjct 4861 GVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVL 4920 Query 897 DSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 DS+SV + KF E FY ++Y KS V+Q Sbjct 4921 DSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 4069 to 4995 Score:1091 bits(2822), Expect:0.0, Method:Compositional matrix adjust., Identities:518/933(56%), Positives:685/933(73%), Gaps:11/933(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 S D ++LNRVRG+S ARL PC +G D +RAFD+ N + + IG K NC RF+ +D Sbjct 4069 SFDNSYLNRVRGSSA-ARLEPC-NGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVD 4126 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 120 D D F++VKR V + E++ Y L K C VA+HDFFT+ + ++ R++L+ Sbjct 4127 KD----DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLT 4182 Query 121 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 180 KYTM+DLC+ALR+FD DC V EIL C YF K+W+D +EN DI +Y LG Sbjct 4183 KYTMMDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGK 4242 Query 181 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 240 + A+L V+F D +V G+VGVLTLDNQDL G +YDFGDF+ PG G+ SYYSY Sbjct 4243 VVANAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSY 4302 Query 241 MMPMLTMCHVLDCELFV-----NDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTV 295 MMP++ M + L E F+ ++ FDL++YDFT++K LFNKYFKYWG YHP+ V Sbjct 4303 MMPVMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCV 4362 Query 296 DCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDV 355 DC ++ CI+HC+NFN LF+ +PNT FGPL R++F+DGVP V + GYH+K+LG+V N DV Sbjct 4363 DCHDEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDV 4422 Query 356 DTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDF 415 +TH RL++ +LL + DP + VAS+ AL+D RT CFSVAA+++G+ QTVKPG+FN++F Sbjct 4423 NTHSTRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEF 4482 Query 416 YEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 475 Y+F++S+G F EGS + LKHFFFTQ G+AAI D++YY+YN PTM+DI Q +V +Y Sbjct 4483 YDFLRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARY 4542 Query 476 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTL 535 F+ Y+GGCI + +V+V N +KSAG+P NKFGKA LYYE++S+EEQ+ I++ TKRN+LPT+ Sbjct 4543 FDCYEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTM 4602 Query 536 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 595 TQ+NLKYAIS K RARTV GVS+L+TMT R FHQKCLKSI ATR VVIGTTKFYGGWD Sbjct 4603 TQLNLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWD 4662 Query 596 DMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANEC 655 +ML++L+ DVD+P LMGWDYPKCDRAMP+++R++S+++L KH CC+ D+FYRL+NE Sbjct 4663 NMLKNLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNEL 4722 Query 656 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLS 715 AQVL+E+V G +Y KPGGT+SGDATTA+ANSVFNI QAV++N+ +++ N + + Sbjct 4723 AQVLTEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFN 4782 Query 716 IRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANI 775 ++ LQ++LY N YR VD +FV+++Y +L KHFSMMILSDD VVCYN YA GYIA+I Sbjct 4783 VKKLQRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADI 4842 Query 776 SVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILG 835 S F+ LYYQN VFMS +KCW E D++ GPHEFCSQHTM + + YLPYPDPSRI+ Sbjct 4843 SAFKATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIIS 4902 Query 836 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQI 895 AG FVDD+ KTD+V+L+ER+VSLAIDAYPL H EY+KVF L+++K L L + Sbjct 4903 AGVFVDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGV 4962 Query 896 LDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 L+S+SV L KF DESFY +MY KS V+Q Sbjct 4963 LESFSVTLLDEHESKFWDESFYASMYEKSTVLQ 4995 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4044 to 4970 Score:1079 bits(2790), Expect:0.0, Method:Compositional matrix adjust., Identities:524/935(56%), Positives:685/935(73%), Gaps:15/935(1%) Query 1 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 60 S D+++LNR RG+S ARL PC +G D +RAFDI N N + +G K+NC RF+ D Sbjct 4044 SVDISYLNRARGSSA-ARLEPC-NGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNAD 4101 Query 61 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRV-PHIVRKNL 119 D +FV+KR V E++ Y L G +AEHDFFT+ DG + ++ R NL Sbjct 4102 LK----DGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWK-DGRVIYGNVSRHNL 4156 Query 120 SKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLG 179 +KYTM+DL YA+R+FD +C VL E+L C SYF K WYD VEN DI +Y LG Sbjct 4157 TKYTMMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLG 4216 Query 180 PIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYS 239 I RA+L V+ D +V G+VGVLTLDNQDL G +YDFGDF+ + P GV SYYS Sbjct 4217 KIVARAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYS 4276 Query 240 YMMPMLTMCHVLDCELFV-----NDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNT 294 YMMP++ + + L E FV ++ FDL++YDFT++K LFNKYFK+W YHPN Sbjct 4277 YMMPIMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNC 4336 Query 295 VDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLD 354 DC +D C+IHCANFN LF+ +P T FGPL R++F+DGVP V + GYH+K+LG+V N D Sbjct 4337 SDCYDDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKD 4396 Query 355 VDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQD 414 V+TH RL++ +LL + DP++ +AS+ AL+D RT CFSVAA+++G+ Q VKPG+FN++ Sbjct 4397 VNTHSVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEE 4456 Query 415 FYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 474 FY F++ +G F EGS + LKHFFF Q+G+AA+ D+++Y+YN PT++DI Q ++V + Sbjct 4457 FYNFLRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSR 4516 Query 475 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPT 534 YF+IY+GGCI A +V+V N +KSAG+P NKFGKA LYYE++S+EEQ+ ++A TKRNVLPT Sbjct 4517 YFDIYEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPT 4576 Query 535 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 594 +TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TR VVIGTTKFYGGW Sbjct 4577 MTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGW 4636 Query 595 DDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANE 654 ++MLR LI V+NP+LMGWDYPKCDRA+PN++R++S++VL KH CC+ DRFYRL NE Sbjct 4637 NNMLRTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNE 4696 Query 655 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDL 714 AQVL+E+V G +Y KPGGT+SGDA+TA+ANS+FNI QAV++N+ L++ ++ Sbjct 4697 LAQVLTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNV 4756 Query 715 SIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIAN 774 ++R+LQ+RLY N YR V+ +F+++YY +L KHFSMMILSDDGVVCYN DYA GYIA+ Sbjct 4757 NVRDLQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIAD 4816 Query 775 ISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRI 833 IS F+ LYYQNNVFMS SKCWVE D+T GPHEFCSQHTM +V DG Y YLPYPDPSRI Sbjct 4817 ISAFKATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTY-YLPYPDPSRI 4875 Query 834 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGN 893 L AG FVDD++KTD+V+L+ER+VSLAIDAYPL H N EY+KVF V L+++K L +L Sbjct 4876 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNE 4935 Query 894 QILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 928 +L+S+SV L KF E FY +MY S ++Q Sbjct 4936 GVLESFSVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Rat coronavirus (strain 681)] Sequence ID: Q9WQ77.1 Length: 307 Range 1: 1 to 307 Score:603 bits(1554), Expect:0.0, Method:Compositional matrix adjust., Identities:286/307(93%), Positives:295/307(96%), Gaps:0/307(0%) Query 502 FNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 561 FNKFGKARLYYEALSFEEQ+EIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 562 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRA 621 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLR LIKDVD+PVLMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 622 MPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 681 MPNILRIVSSLVLARKH+ CCSH DRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 682 TTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEY 741 TTAFANSVFNICQAV+ANVCSLMACNGHKIEDLSIR LQKRLYSNVYR D+VD FV+EY Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 742 YEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQVLYYQNNVFMSESKCWVENDI 801 YEFL KHFSMMILSDDGVVCYNS++ASKGYIANIS FQQVLYYQNNVFMSE+KCWVE DI Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 802 TNGPHEF 808 GPHEF Sbjct 301 EKGPHEF 307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Turkey coronavirus (strain Minnesota)] Sequence ID: Q9WQ76.1 Length: 306 Range 1: 1 to 306 Score:440 bits(1131), Expect:5e-147, Method:Compositional matrix adjust., Identities:208/307(68%), Positives:249/307(81%), Gaps:1/307(0%) Query 502 FNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 561 FNKFGKARLYYE +S EEQ++++ TK+NVLPT+TQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 562 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRA 621 MT R FHQK LKSI TR PVVIGTTKFYGGWD+MLR+LI+ V++P+LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 622 MPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 681 MPN+LRI +SLVLARKH CC+ +R YRL NECAQVLSE V+ G YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 682 TTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYSNVYRTDYVDYTFVNEY 741 TTA+ANSVFNI QA +ANV L++ I I++LQ LY VYR D FV ++ Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 742 YEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQVLYYQNNVFMSESKCWVENDI 801 Y +LCK+FS+MI +DDGVVCYN+ A +G +A+IS F+++LYYQNNV+M++SKCWVE D+ Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 802 TNGPHEF 808 GPHEF Sbjct 300 EKGPHEF 306 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 4929 to 5364 Score:122 bits(307), Expect:7e-27, Method:Compositional matrix adjust., Identities:121/466(26%), Positives:207/466(44%), Gaps:38/466(8%) Query 433 LKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVN 492 K+F++ + A+ D YY Y K L V + + + E Y I Sbjct 4929 FKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFMKRVTECYR---INERFTYEQ 4985 Query 493 NYDKSAGYPFNKFG-KARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRAR 551 + + N G + Y AL E ++ Y ++ LP T++ K+A+SAK RAR Sbjct 4986 AKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAPLPFCTKIITKFALSAKARAR 5045 Query 552 TVAGVSILSTMTGRMFHQKC---LKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNP 608 TV+ S +++ R H+ + +A G +IG +K+ + L+ ++ Sbjct 5046 TVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVSKYGLKFSKFLKDKYGAIEGF 5105 Query 609 VLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGC 668 + G DY KCDR P R +++ +L E+ ++ + NE + + ++C G Sbjct 5106 DVFGSDYTKCDRTFPLSFRALTAALLYELGEW----DEKSWLYLNEVNSYMLDTMLCDGM 5161 Query 669 YYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYS-NV 727 KPGGTSSGDATTA +N+ +N ++++ DLS N R+ + N Sbjct 5162 LLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILS-------DLSEGNKVMRIAAHNA 5214 Query 728 YRTDYVDYTFVNEYYE--FLCKHFSMMILSDDGVVCYNSDYASKGYIANISVFQQVLYYQ 785 Y T DY N E F +F + LSDD + + N S Q + + Sbjct 5215 YTTG--DYQVFNTLLEDQFQTNYF-LNFLSDDSFIFSKPEALKIFTCENFSNKLQTILHT 5271 Query 786 NNVFMSESKCWVENDITNGP-HEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVDDLL 844 + ++K W T G EFCS H ++K DG+Y +L P R+L + +D L Sbjct 5272 K---VDQTKSWS----TKGHIEEFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDKLS 5320 Query 845 KTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYND 890 D + RFV++ ++ ++ E + +F+V+L+ +++ D Sbjct 5321 DVDIYYM--RFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRKD 5364 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 4882 to 5263 Score:116 bits(290), Expect:6e-25, Method:Compositional matrix adjust., Identities:114/422(27%), Positives:191/422(45%), Gaps:49/422(11%) Query 512 YEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKC 571 Y AL E +++ Y ++ LP T++ K+A+SAK RARTV+ S +++ R H+ Sbjct 4882 YRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPV 4941 Query 572 ---LKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRI 628 + +A +IG +K+ + L+ ++ + G DY KCDR P R Sbjct 4942 TSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRA 5001 Query 629 VSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANS 688 +++ +L +E D + L NE + + ++C G KPGGTSSGDATTA +N+ Sbjct 5002 LTAALL---YELGGWEEDSWLYL-NEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNT 5057 Query 689 VFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYS-NVYRTDYVDYTFVNEYYE--FL 745 +N ++++ DLS N R+ + N Y T DY N E F Sbjct 5058 FYNYMVHYVVAFKTILS-------DLSDCNKVMRIAAHNAYTTG--DYGVFNTLLEEQFQ 5108 Query 746 CKHFSMMILSDDGVVCYNSDYASKGYIANIS-VFQQVLYYQNNVFMSESKCWVENDITNG 804 +F + LSDD + N S Q +L+ + ++ +K W T Sbjct 5109 TNYF-LNFLSDDSFIFSKPGALKIFTCENFSNKLQTILHTKVDL----TKSWA---TTGH 5160 Query 805 PHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVDDLLKTDSVLLIERFVSLAIDAYP 864 EFCS H ++K DG+Y +L P R+L + +D L D + RFV++ ++ Sbjct 5161 IEEFCSAH--IIKTDGEYHFL--PSRGRLLASLLILDKLSDVD--IYYMRFVAILCESAV 5214 Query 865 LVHHENEEYQKVFRVYLEYIKKLYNDLGNQILDSYSVILSTCD--GLKFTDESFYKNMYL 922 ++ E + +F+V+L+ +++ D CD + D FY+N+ Sbjct 5215 YSRYQPEFFNGLFQVFLDKVQQFRKDY-------------CCDPCPTQLLDRQFYENLVF 5261 Query 923 KS 924 S Sbjct 5262 TS 5263 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 4924 to 5301 Score:92.8 bits(229), Expect:9e-18, Method:Compositional matrix adjust., Identities:112/411(27%), Positives:177/411(43%), Gaps:52/411(12%) Query 445 AITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKSAGYP-FN 503 A+ D+ YY YN P D L+ VY Y I + + + +G P + Sbjct 4924 AVEDFMYYNYNSPKSFDPS----YLKSVYTYMRDKFMKIISTDEKL----NHQSGAPRMS 4975 Query 504 KFGKA------RLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVS 557 G + + AL + + + V+P T + K+ K R RT+ G S Sbjct 4976 SMGVGVSGFFQKTVWNALPEDFSPRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSS 5035 Query 558 ILSTMTGRMFHQ----KCLKSIAATRGVPVVIGTTKFYGGWDDMLR-HLIKDVDNPVLMG 612 +++ RM H+ K +++ A G P +IG +KF G+ L H +++ +MG Sbjct 5036 FITSSIFRMLHKPVTNKMVQTAQANIG-PFLIGISKFNLGFHKYLSAHHPNGIEDCQVMG 5094 Query 613 WDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVK 672 DY KCDR+ P + R +S+ + +E + + L NE L + G + K Sbjct 5095 ADYTKCDRSFPVVCRALSAALF---YELGHLEPNNHWFL-NEMFAFLLDPSFISGHIFNK 5150 Query 673 PGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRLYSNVYRTDY 732 PGGT+SGD+TTAF+NS +N + + + + NL + +S T+ Sbjct 5151 PGGTTSGDSTTAFSNSFYNYFVHLYIQYLTFLTTEMPPSYQ-PLCNLAHQAFS-TGNTET 5208 Query 733 VDYTF-----VNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANISV-FQQVLYYQN 786 D F +N FL HF LSDD + AN S+ Q VL Sbjct 5209 YDLYFSMADDLNSTEYFL--HF----LSDDSFIISKPTAFPIFTPANFSMKLQNVL---- 5258 Query 787 NVFMSESKCW-VENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGA 836 ++ +K W + +I HEFCS H + KI+ Y Y+ PDP+ +L Sbjct 5259 GCYVDPAKSWSADGEI----HEFCSSH--ICKINEKYQYV--PDPNNMLAG 5301 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Simian hemorrhagic fever virus] Sequence ID: Q68772.4 Length: 3595 Range 1: 2333 to 2602 Score:58.2 bits(139), Expect:4e-07, Method:Compositional matrix adjust., Identities:73/303(24%), Positives:128/303(42%), Gaps:43/303(14%) Query 437 FFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYF--------EIYDGGCIPASQ 488 ++TQ G A + K+NL T I L VL +V Y IY +P++ Sbjct 2333 YYTQHGCEAAALQDLKKFNLSTQGFI--LPEVLNIVRNYLLGTIGYRPAIYKPSTVPSN- 2389 Query 489 VIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKN 548 D AG F L + + +E+ V T+T + LK +K Sbjct 2390 ------DSHAGINGLSFSTKTLQ----ALPDIDELCEKAIAEVWQTVTPVTLKKQFCSKA 2439 Query 549 RARTVAGVSILSTMTGRMFHQKCLKSIA-ATRGVPVVIGTTKFYGGWDDMLRHLIKDVDN 607 + RT+ G + ++++ R + A + P+ +G +KF D +K Sbjct 2440 KTRTILGTNAMASLALRALLSGVTQGFQLAGKNSPICLGKSKF-----DPCTFEVKGR-- 2492 Query 608 PVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGG 667 + D CDR+ P I+R ++ +L E C+ + N C ++++ Sbjct 2493 --CLETDLASCDRSTPAIVRHFATKLL---FEMACAERALPLYVVNCC----HDLIVTQT 2543 Query 668 CYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRNLQKRL-YSN 726 K GG SSGD T+ AN+++++ V V +L+ NGH LS++ L +L + + Sbjct 2544 SAATKRGGLSSGDPVTSIANTIYSLVLYVQHMVLTLLE-NGHP---LSLKFLSGKLNFQD 2599 Query 727 VYR 729 +Y+ Sbjct 2600 LYK 2602 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV VR2332] Sequence ID: Q9WJB2.2 Length: 3960 Range 1: 2739 to 3034 Score:55.1 bits(131), Expect:3e-06, Method:Compositional matrix adjust., Identities:85/332(26%), Positives:138/332(41%), Gaps:57/332(17%) Query 443 NAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKS-AGYP 501 +AA+ D + KY+L T + L VL +V KY + G C P + S AG Sbjct 2739 DAALKDLS--KYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGIN 2794 Query 502 FNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGV----- 556 N+F + S E + + A R T+T LK K + RT+ G Sbjct 2795 GNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIA 2850 Query 557 ----SILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIKDVDNPVL-- 610 ++LS +T + F +K S P+ +G KF K++ PVL Sbjct 2851 LAHRAVLSGVT-QGFMKKAFNS-------PIALGKNKF------------KELQTPVLGR 2890 Query 611 -MGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCY 669 + D CDR+ P I+R ++ +L +E C+ + N C +L + G Sbjct 2891 CLEADLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL--VTQSGA-- 2943 Query 670 YVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHK-----IED-LSIRNLQKRL 723 K GG SSGD T+ +N+++++ V S +GH ++D L ++ K Sbjct 2944 VTKRGGLSSGDPITSVSNTIYSLVIYAQHMVLSYFK-SGHPHGLLFLQDQLKFEDMLKVQ 3002 Query 724 YSNVYRTDYVDY--TFVNEYYEFLCKHFSMMI 753 VY D V Y + Y + +H ++M+ Sbjct 3003 PLIVYSDDLVLYAESPTMPNYHWWVEHLNLML 3034 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lactate dehydrogenase elevating virus Plagemann] Sequence ID: Q83017.2 Length: 3616 Range 1: 2524 to 2735 Score:53.5 bits(127), Expect:9e-06, Method:Compositional matrix adjust., Identities:67/247(27%), Positives:104/247(42%), Gaps:62/247(25%) Query 534 TLTQMNLKYAISAKNRARTVAG------VSILSTMTG--RMFHQKCLKSIAATRGVPVVI 585 T+T LK +K++ RT+ G + + S ++G + F +K + G P+ + Sbjct 2524 TVTPCTLKKQYCSKSKTRTILGTNNFVALGLRSALSGVTQGFMRKGI-------GTPICL 2576 Query 586 GTTKFYGGWDDMLRHLIKDVDNPVLMGW-----DYPKCDRAMPNILRIVSS---LVLARK 637 G KF PV +G D CDR+ P I+R ++ LA Sbjct 2577 GKNKF--------------TPLPVRIGGRCLEADLASCDRSTPAIIRWFTTNLLFELAGA 2622 Query 638 HEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVT 697 E+ S+ + N C V+S + C + K GG SSGD T+ +N+V+++ Sbjct 2623 EEWIPSY------VLNCCHDVVSTMSGC----FDKRGGLSSGDPVTSISNTVYSLIIYAQ 2672 Query 698 ANVCSLMACNGHKIEDLSIRN---------LQKRLYSNVYRTDYVDYTFVNEY--YEFLC 746 V S C GHKI L +++ LQ L VY D V Y +E Y F Sbjct 2673 HMVLSAFRC-GHKIGGLFLQDSLEMEQLFELQPLL---VYSDDVVFYNESDELPNYHFFV 2728 Query 747 KHFSMMI 753 H +M+ Sbjct 2729 DHLDLML 2735 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV HB-1(sh)/2002] Sequence ID: Q8B912.3 Length: 3961 Range 1: 2740 to 2967 Score:52.8 bits(125), Expect:2e-05, Method:Compositional matrix adjust., Identities:68/261(26%), Positives:110/261(42%), Gaps:44/261(16%) Query 443 NAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKS-AGYP 501 +AA+ D + KY+L T + L VL +V KY + G C P + S AG Sbjct 2740 DAALRDLS--KYDLVTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGIN 2795 Query 502 FNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 561 N+F + S E + + A R T+T LK K + RT+ G + Sbjct 2796 GNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIA 2851 Query 562 MTGRMFHQKCLKSIAATRG-------VPVVIGTTKFYGGWDDMLRHLIKDVDNPVL---M 611 + H+ L + T+G P+ +G KF K++ PVL + Sbjct 2852 LA----HRAALSGV--TQGFMKKAFNSPIALGKNKF------------KELQTPVLGRCL 2893 Query 612 GWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYV 671 D CDR+ P I+R ++ +L +E C+ + N C +L + G Sbjct 2894 EADLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL--VTQSGA--VT 2946 Query 672 KPGGTSSGDATTAFANSVFNI 692 K GG SSGD T+ +N+++++ Sbjct 2947 KRGGLSSGDPITSVSNTIYSL 2967 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lactate dehydrogenase elevating virus C] Sequence ID: Q06502.2 Length: 3637 Range 1: 2545 to 2756 Score:51.2 bits(121), Expect:5e-05, Method:Compositional matrix adjust., Identities:66/242(27%), Positives:101/242(41%), Gaps:52/242(21%) Query 534 TLTQMNLKYAISAKNRARTVAG------VSILSTMTG--RMFHQKCLKSIAATRGVPVVI 585 T+T LK +K + RT+ G + + S ++G + F +K + G P+ + Sbjct 2545 TVTPCTLKKQYCSKAKTRTILGTNNFVALGLRSALSGVTQGFMRKGI-------GSPICL 2597 Query 586 GTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSS---LVLARKHEFCC 642 G KF L V L D CDR+ P I+R ++ LA E+ Sbjct 2598 GKNKF--------TPLPTKVSGRCLEA-DLASCDRSTPAIIRWFTTNLLFELAGPEEWIP 2648 Query 643 SHGDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCS 702 S+ + N C +S + C + K GG SSGD T+ +N+V+++ V S Sbjct 2649 SY------VLNCCHDAVSTMSGC----FDKRGGLSSGDPVTSVSNTVYSLVIYAQHMVLS 2698 Query 703 LMACNGHKIEDLSIRN---------LQKRLYSNVYRTDYVDYTFVNEY--YEFLCKHFSM 751 C GHK+ L +R+ LQ L VY D V Y +E Y F H + Sbjct 2699 AFRC-GHKVGGLFLRDSLEMEQLFELQPLL---VYSDDVVLYDESSELPNYHFFVDHLDL 2754 Query 752 MI 753 M+ Sbjct 2755 ML 2756 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV 16244B] Sequence ID: Q9YN02.3 Length: 3961 Range 1: 2740 to 3035 Score:50.1 bits(118), Expect:1e-04, Method:Compositional matrix adjust., Identities:82/330(25%), Positives:135/330(40%), Gaps:53/330(16%) Query 443 NAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNYDKS-AGYP 501 +AA+ D + KY+L T + L VL +V KY + G C P + S AG Sbjct 2740 DAALKDLS--KYDLSTQGFV--LPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMAGIN 2795 Query 502 FNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 561 N+F + S E + + A R T+T LK K + RT+ G + Sbjct 2796 GNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNNFIA 2851 Query 562 MTGRMFHQKCLKSIAATRG-------VPVVIGTTKFYGGWDDMLRHLIKDVDNPVL---M 611 + H+ L + T+G P+ +G KF K++ VL + Sbjct 2852 LA----HRAALSGV--TQGFMKKAFNSPIALGKNKF------------KELQTSVLGRCL 2893 Query 612 GWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANECAQVLSEIVMCGGCYYV 671 D CDR+ P I+R ++ +L +E C+ + N C +L + G Sbjct 2894 EADLASCDRSTPAIVRWFAANLL---YELACAEEHLPSYVLNCCHDLL--VTQSGA--VT 2946 Query 672 KPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHK-----IED-LSIRNLQKRLYS 725 K GG SSGD T+ +N+++++ V S +GH ++D L ++ K Sbjct 2947 KRGGLSSGDPITSVSNTIYSLVIYAQHMVLSYFK-SGHPHGLLFLQDQLKFEDMLKVQPL 3005 Query 726 NVYRTDYVDY--TFVNEYYEFLCKHFSMMI 753 VY D V Y + Y + +H ++M+ Sbjct 3006 IVYSDDLVLYAESPTMPNYHWWVEHLNLML 3035 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lelystad virus] Sequence ID: Q04561.3 Length: 3855 Range 1: 2624 to 2928 Score:48.9 bits(115), Expect:2e-04, Method:Compositional matrix adjust., Identities:89/343(26%), Positives:141/343(41%), Gaps:63/343(18%) Query 436 FFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNY- 494 F T+ G + + KY+L T + L VL +V ++ + G P + + Y Sbjct 2624 FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPL--FLPSTYP 2679 Query 495 --DKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRART 552 + AG +F + S E +E+ A + T+T LK +K + RT Sbjct 2680 AKNSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRT 2735 Query 553 VAGV---------SILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIK 603 + G S LS +T + F +K KS P+ +G KF + L Sbjct 2736 ILGTNNFIALAHRSALSGVT-QAFMKKAWKS-------PIALGKNKF--------KELHC 2779 Query 604 DVDNPVLMGWDYPKCDRAMPNILR-IVSSLV--LARKHEFCCSHGDRFYRLANECAQVLS 660 V L D CDR+ P I+R V++L+ LA E+ S+ + N C Sbjct 2780 TVAGRCLEA-DLASCDRSTPAIVRWFVANLLYELAGCEEYLPSY------VLNCC----H 2828 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKI------EDL 714 ++V + K GG SSGD T+ +N+V+++ V S + GH+I E L Sbjct 2829 DLVATQDGAFTKRGGLSSGDPVTSVSNTVYSLVIYAQHMVLSALKM-GHEIGLKFLEEQL 2887 Query 715 SIRNLQKRLYSNVYRTDYVDY----TFVNEYYEFLCKHFSMMI 753 +L + VY D V Y TF N Y + +H +M+ Sbjct 2888 KFEDLLEIQPMLVYSDDLVLYAERPTFPN--YHWWVEHLDLML 2928 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV SD 01-08] Sequence ID: A0MD28.2 Length: 3838 Range 1: 2607 to 2911 Score:48.9 bits(115), Expect:2e-04, Method:Compositional matrix adjust., Identities:89/343(26%), Positives:141/343(41%), Gaps:63/343(18%) Query 436 FFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKYFEIYDGGCIPASQVIVNNY- 494 F T+ G + + KY+L T + L VL +V ++ + G P + + Y Sbjct 2607 FMCTKHGTSKAAAEDLQKYDLSTQGFV--LPGVLRLVRRFIFGHIGKAPPL--FLPSTYP 2662 Query 495 --DKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTLTQMNLKYAISAKNRART 552 + AG +F + S E +E+ A + T+T LK +K + RT Sbjct 2663 AKNSMAGINGQRFPTK----DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRT 2718 Query 553 VAGV---------SILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHLIK 603 + G S LS +T + F +K KS P+ +G KF + L Sbjct 2719 ILGTNNFIALAHRSALSGVT-QAFMKKAWKS-------PIALGKNKF--------KELHC 2762 Query 604 DVDNPVLMGWDYPKCDRAMPNILR-IVSSLV--LARKHEFCCSHGDRFYRLANECAQVLS 660 V L D CDR+ P I+R V++L+ LA E+ S+ + N C Sbjct 2763 TVAGRCLEA-DLASCDRSTPAIVRWFVANLLYELAGCEEYLPSY------VLNCC----H 2811 Query 661 EIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKI------EDL 714 ++V + K GG SSGD T+ +N+V+++ V S + GH+I E L Sbjct 2812 DLVATQDGAFTKRGGLSSGDPVTSVSNTVYSLIIYAQHMVLSALKM-GHEIGLKFLEEQL 2870 Query 715 SIRNLQKRLYSNVYRTDYVDY----TFVNEYYEFLCKHFSMMI 753 +L + VY D V Y TF N Y + +H +M+ Sbjct 2871 KFEDLLEIQPMLVYSDDLVLYAERPTFPN--YHWWVEHLDLML 2911 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain California)] Sequence ID: P18479.2 Length: 3080 Range 1: 2356 to 2522 Score:44.7 bits(104), Expect:0.005, Method:Compositional matrix adjust., Identities:45/174(26%), Positives:75/174(43%), Gaps:29/174(16%) Query 450 NYYKYNLPTMV---DIKQLLFVLEVVYKY---FEIYDGGCIPASQVIVNNYDKSAGYPFN 503 +++KYN P V D + L ++ V + FE + I + I N+ + A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 504 KFGKARLYYEALS-FEEQNEIYAYTKR--NVLPTLTQMNLKYAISA-----KNRARTVAG 555 GK + Y+E L F+ + ++ +R N L +LK + N+ RT Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 556 VSILSTMTGRM--------FHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHL 601 I + + ++ F++K LK P +G TKFYGGWD ++R L Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSL 2522 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain Singapore)] Sequence ID: O36979.2 Length: 3083 Range 1: 2359 to 2525 Score:42.7 bits(99), Expect:0.020, Method:Compositional matrix adjust., Identities:44/174(25%), Positives:75/174(43%), Gaps:29/174(16%) Query 450 NYYKYNLPTMV---DIKQLLFVLEVVYKY---FEIYDGGCIPASQVIVNNYDKSAGYPFN 503 +++KYN P +V D + L + V + FE + I + I ++ + A Sbjct 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDPEEIYDSLNMKAAIGAQ 2418 Query 504 KFGKARLYYEAL-SFEEQNEIYAYTKR--NVLPTLTQMNLKYAISA-----KNRARTVAG 555 GK + Y+E L +F+ + ++ +R N L +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 556 VSILSTMTGRM--------FHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHL 601 I + + ++ F+ K LK P +G TKFYGGWD ++R L Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMREL 2525 >RecName: Full=Meiosis-specific APC/C activator protein AMA1; AltName: Full=Activator of meiotic APC/C protein 1; AltName: Full=Sporulation-specific protein 70 [Saccharomyces cerevisiae S288C] Sequence ID: P50082.2 Length: 593 Range 1: 501 to 571 Score:40.8 bits(94), Expect:0.062, Method:Compositional matrix adjust., Identities:23/71(32%), Positives:38/71(53%), Gaps:8/71(11%) Query 604 DVDNPVLMG-WDYPKCDRAM----PNILRIVSSLVLARKHEFCCSHGD---RFYRLANEC 655 D NPVL+ + YPK + + PN LR++S+++ C + D RFY L N+ Sbjct 501 DTKNPVLITLYSYPKLSKLLEVRSPNPLRVLSAVISPSSMAICVATNDETIRFYELWNDK 560 Query 656 AQVLSEIVMCG 666 ++++EI G Sbjct 561 EEIINEIQESG 571 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain Reunion Island)] Sequence ID: Q89330.1 Length: 3083 Range 1: 2359 to 2525 Score:40.8 bits(94), Expect:0.076, Method:Compositional matrix adjust., Identities:43/174(25%), Positives:76/174(43%), Gaps:29/174(16%) Query 450 NYYKYNLPTMV---DIKQLLFVLEVVYKY---FEIYDGGCIPASQVIVNNYDKSAGYPFN 503 +++KYN P +V D + L ++ V + FE + I + I ++ + A Sbjct 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFEFNECRFITDPEEIYSSLNMKAAIGAQ 2418 Query 504 KFGKARLYYEAL-SFEEQNEIYAYTKR--NVLPTLTQMNLKYAISA-----KNRARTVAG 555 GK + Y+E L +F+ + ++ +R N L +LK + N+ RT Sbjct 2419 YRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFTA 2478 Query 556 VSILSTMTGRM--------FHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRHL 601 I + + ++ F+ K LK P +G +KFYGGWD ++R L Sbjct 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRAL 2525 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-A; Short=NIA; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-B; Short=NIB; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Watermelon mosaic virus 2 (isolate USA)] Sequence ID: P18478.3 Length: 1017 Range 1: 438 to 541 Score:40.4 bits(93), Expect:0.078, Method:Compositional matrix adjust., Identities:32/115(28%), Positives:54/115(46%), Gaps:17/115(14%) Query 582 PVVIGTTKFYGGWDDMLRHLIKDVDNPVLMGWDYPKCDRAM--PNILRIVSSLVLARKHE 639 P +G TKFYGGWD ++R L GW Y D + ++ ++ + VL+ + Sbjct 438 PWTVGMTKFYGGWDKLMRSLPD--------GWTYCHADGSQFDSSLTPLLLNAVLSIR-- 487 Query 640 FCCSHGDRFY---RLANECAQVL-SEIVMCGGCYYVKPGGTSSGDATTAFANSVF 690 CC D + L N A+++ + I+ G + K G +SG +T N++ Sbjct 488 -CCFMEDWWVGREMLENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLM 541