RID: RZA4RM1J016 Job Title:BEGW01000029.1 Saccharomyces cerevisiae Program: BLASTX Query: BEGW01000029.1 Saccharomyces cerevisiae DNA, contig: contig29, whole genome shotgun sequence ID: lcl|Query_53495(dna) Length: 26970 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=DNA-directed RNA polymerase II subunit RPB3;... Schizosaccha... NA 284812 320 320 2% 5e-97 53.26 297 P37382.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB3;... Mus musculus house mouse 10090 229 229 2% 8e-66 45.56 275 P97760.2 RecName: Full=DNA-directed RNA polymerase II subunit RPB3;... Bos taurus cattle 9913 229 229 2% 1e-65 45.56 275 Q3T0Q3.1 RecName: Full=DNA-directed RNA polymerase II subunit RPB3;... Homo sapiens human 9606 228 228 2% 3e-65 45.56 275 P19387.2 RecName: Full=DNA-directed RNA polymerase II subunit rpb3;... Dictyosteliu... NA 44689 175 175 2% 1e-46 36.75 302 Q54DH7.1 Alignments: >RecName: Full=DNA-directed RNA polymerase II subunit RPB3; Short=RNA polymerase II subunit 3; Short=RNA polymerase II subunit B3; AltName: Full=DNA-directed RNA polymerase II 33 kDa polypeptide [Schizosaccharomyces pombe 972h-] Sequence ID: P37382.2 Length: 297 Range 1: 6 to 278 Score:320 bits(821), Expect:5e-97, Method:Compositional matrix adjust., Identities:147/276(53%), Positives:207/276(75%), Gaps:13/276(4%) Query 25054 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 25233 + IR SK++VDF+L+N LA+ANSLRRV++AEIPT+AID VE+ NT+V+ DEF+AHR Sbjct 6 HITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHR 65 Query 25234 LGLIPLQSMDIEQ-----LEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIV 25398 LG+IPL S +I++ LEY+R+C C+ +C KCSV L L A E T +Y++DLV+ Sbjct 66 LGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVS 125 Query 25399 SNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYD 25578 SN ++GHPI+ D + G LICKLRK QE+ L C+AKKGIAKEHAKW P +A+ FEYD Sbjct 126 SN---SSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYD 182 Query 25579 PWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVD 25758 PWNKL+HTDYW+E D+ EWP+SKN ++E+PP EG+PF+++ + FYM+VESVGSIP + Sbjct 183 PWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPN 242 Query 25759 QVVVRGIDTLQKKVASILLAL-----TQMDQDKVNF 25851 +++V+G+ LQ+K+A ++ L TQ+ +++N Sbjct 243 EIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNM 278 >RecName: Full=DNA-directed RNA polymerase II subunit RPB3; Short=RNA polymerase II subunit 3; Short=RNA polymerase II subunit B3; AltName: Full=DNA-directed RNA polymerase II 33 kDa polypeptide; Short=RPB33; AltName: Full=DNA-directed RNA polymerase II subunit C; AltName: Full=RPB31 [Mus musculus] Sequence ID: P97760.2 Length: 275 Range 1: 7 to 271 Score:229 bits(585), Expect:8e-66, Method:Compositional matrix adjust., Identities:123/270(46%), Positives:173/270(64%), Gaps:10/270(3%) Query 25051 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 25230 P V+I E +++NV FI+ N DLA+ANS+RRV IAE+P +AID V+++ N++VL DEFIAH Sbjct 7 PTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAH 66 Query 25231 RLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI---- 25395 RLGLIPL S DI ++L+YSRDC CE+ C +CSV TL + T +V S+DL+ Sbjct 67 RLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPR 126 Query 25396 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 25575 V + RN + E + +LI KLRKGQEL+L AKKG KEHAKW P A + FEY Sbjct 127 VIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEY 186 Query 25576 DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV 25755 DP N L+HT Y +EWP+S+ E ++ ++ P+D + + FY NVES GS+ Sbjct 187 DPDNALRHTVY----PKPEEWPKSEYSELDEDESQA-PYDPNGKPERFYYNVESCGSLRP 241 Query 25756 DQVVVRGIDTLQKKVASILLALTQMDQDKV 25845 + +V+ + L+KK++ + L+ Q V Sbjct 242 ETIVLSALSGLKKKLSDLQTQLSHEIQSDV 271 >RecName: Full=DNA-directed RNA polymerase II subunit RPB3; Short=RNA polymerase II subunit 3; Short=RNA polymerase II subunit B3; AltName: Full=DNA-directed RNA polymerase II subunit C [Bos taurus] Sequence ID: Q3T0Q3.1 Length: 275 Range 1: 7 to 271 Score:229 bits(584), Expect:1e-65, Method:Compositional matrix adjust., Identities:123/270(46%), Positives:172/270(63%), Gaps:10/270(3%) Query 25051 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 25230 P V+I E + +NV FI+ N DLA+ANS+RRV IAE+P +AID V+++ N++VL DEFIAH Sbjct 7 PTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAH 66 Query 25231 RLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI---- 25395 RLGLIPL S DI ++L+YSRDC CE+ C +CSV TL + T +V S+DL+ Sbjct 67 RLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPR 126 Query 25396 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 25575 V + RN + E + +LI KLRKGQEL+L AKKG KEHAKW P A + FEY Sbjct 127 VIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEY 186 Query 25576 DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV 25755 DP N L+HT Y +EWP+S+ E ++ ++ P+D + + FY NVES GS+ Sbjct 187 DPDNALRHTVY----PKPEEWPKSEYSELDEDESQA-PYDPNGKPERFYYNVESCGSLRP 241 Query 25756 DQVVVRGIDTLQKKVASILLALTQMDQDKV 25845 + +V+ + L+KK++ + L+ Q V Sbjct 242 ETIVLSALSGLKKKLSDLQTQLSHEIQSDV 271 >RecName: Full=DNA-directed RNA polymerase II subunit RPB3; Short=RNA polymerase II subunit 3; Short=RNA polymerase II subunit B3; AltName: Full=DNA-directed RNA polymerase II 33 kDa polypeptide; Short=RPB33; AltName: Full=DNA-directed RNA polymerase II subunit C; AltName: Full=RPB31 [Homo sapiens] Sequence ID: P19387.2 Length: 275 Range 1: 7 to 271 Score:228 bits(581), Expect:3e-65, Method:Compositional matrix adjust., Identities:123/270(46%), Positives:172/270(63%), Gaps:10/270(3%) Query 25051 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 25230 P V+I E + +NV FI+ N DLA+ANS+RRV IAE+P +AID V+++ N++VL DEFIAH Sbjct 7 PTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAH 66 Query 25231 RLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI---- 25395 RLGLIPL S DI ++L+YSRDC CE+ C +CSV TL + T +V S+DL+ Sbjct 67 RLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPR 126 Query 25396 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 25575 V + RN + E + +LI KLRKGQEL+L AKKG KEHAKW P A + FEY Sbjct 127 VIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEY 186 Query 25576 DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV 25755 DP N L+HT Y +EWP+S+ E ++ ++ P+D + + FY NVES GS+ Sbjct 187 DPDNALRHTVY----PKPEEWPKSEYSELDEDESQA-PYDPNGKPERFYYNVESCGSLRP 241 Query 25756 DQVVVRGIDTLQKKVASILLALTQMDQDKV 25845 + +V+ + L+KK++ + L+ Q V Sbjct 242 ETIVLSALSGLKKKLSDLQTQLSHEIQSDV 271 >RecName: Full=DNA-directed RNA polymerase II subunit rpb3; Short=RNA polymerase II subunit 3; Short=RNA polymerase II subunit B3; AltName: Full=DNA-directed RNA polymerase II subunit C [Dictyostelium discoideum] Sequence ID: Q54DH7.1 Length: 302 Range 1: 12 to 293 Score:175 bits(444), Expect:1e-46, Method:Compositional matrix adjust., Identities:104/283(37%), Positives:148/283(52%), Gaps:31/283(10%) Query 25051 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 25230 P+++I E D++ FILSN D+++AN+LRRVMIAE+PT+ ID VE E+N +VL DEFIAH Sbjct 12 PELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIAH 71 Query 25231 RLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLM 25410 RLGLIPL S +I++ Y+RDC C D CD+CSV L L +V S DL + N Sbjct 72 RLGLIPLVSDNIDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDL-LSQNSA 130 Query 25411 GRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNK 25590 + + + I KLR+GQE+KL +AKKG+ KEHAKW P+ +++ P Sbjct 131 VIPVSSQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIV 190 Query 25591 LKHTDYWYEQDSAK-EWPQS--------------KNCEYEDPPN---------------E 25680 L D K EW S + EDP + Sbjct 191 LNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECKKKAESFGK 250 Query 25681 GDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASI 25809 D + + D F VES G++ + +V+ I +++K+ I Sbjct 251 PDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDI 293