TBLASTN 2.8.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= RL2A_YEAST P0CX45 60S ribosomal protein L2-A {ECO:0000303|PubMed:9559554} (L5) (Large ribosomal subunit protein uL2-A {ECO:0000303|PubMed:24524803}) (RP8) (YL6) Length=254 Score E Sequences producing significant alignments: (Bits) Value scaffold-489 355 1e-112 scaffold-444 355 1e-112 unplaced-307 61.6 7e-11 scaffold-17 61.2 1e-10 scaffold-340 27.3 9.0 scaffold-359 27.3 9.5 > scaffold-489 Length=26488 Score = 355 bits (911), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 175/253 (69%), Positives = 219/253 (87%), Gaps = 0/253 (0%) Frame = +2 Query 1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK 60 MGRVIR QRKG G IF +HT+ R+GAAK R LD+AERHGY+RG+VK+I+HD GRGAPLAK Sbjct 5732 MGRVIRAQRKGPGGIFKAHTKHRKGAAKHRVLDFAERHGYVRGLVKEIIHDPGRGAPLAK 5911 Query 61 VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP 120 V FRDPY+Y++R E FIA EG+++GQF+Y GKKA+L VGNVLPL S+PEGTI+ NVE K Sbjct 5912 V*FRDPYRYKMRTETFIAAEGMYSGQFVYVGKKANLTVGNVLPLSSMPEGTIICNVE*KV 6091 Query 121 GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDargvigviagggrvDKPLL 180 GDRG+ AR+SGNY +IGHN D+ KTR++LPSGAKKV+ S +R ++G++AGGGR+DKP+L Sbjct 6092 GDRGSFARSSGNYATVIGHNTDDGKTRIKLPSGAKKVVPSLSRAMVGIVAGGGRIDKPIL 6271 Query 181 KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA 240 KAGRA+HKY+ KRN WPKTRGVAMNPV+HPHGGGNHQHIG AST++R + G+K GLIAA Sbjct 6272 KAGRAYHKYKAKRNCWPKTRGVAMNPVEHPHGGGNHQHIGHASTVARDSPPGKKVGLIAA 6451 Query 241 RRTGLLRGSQKTQ 253 RRTGL+RG+++ + Sbjct 6452 RRTGLIRGTKQLK 6490 > scaffold-444 Length=851481 Score = 355 bits (911), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 175/253 (69%), Positives = 219/253 (87%), Gaps = 0/253 (0%) Frame = +1 Query 1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK 60 MGRVIR QRKG G IF +HT+ R+GAAK R LD+AERHGY+RG+VK+I+HD GRGAPLAK Sbjct 499153 MGRVIRAQRKGPGGIFKAHTKHRKGAAKHRVLDFAERHGYVRGLVKEIIHDPGRGAPLAK 499332 Query 61 VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP 120 V FRDPY+Y++R E FIA EG+++GQF+Y GKKA+L VGNVLPL S+PEGTI+ NVE K Sbjct 499333 V*FRDPYRYKMRTETFIAAEGMYSGQFVYVGKKANLTVGNVLPLSSMPEGTIICNVE*KV 499512 Query 121 GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDargvigviagggrvDKPLL 180 GDRG+ AR+SGNY +IGHN D+ KTR++LPSGAKKV+ S +R ++G++AGGGR+DKP+L Sbjct 499513 GDRGSFARSSGNYATVIGHNTDDGKTRIKLPSGAKKVVPSLSRAMVGIVAGGGRIDKPIL 499692 Query 181 KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA 240 KAGRA+HKY+ KRN WPKTRGVAMNPV+HPHGGGNHQHIG AST++R + G+K GLIAA Sbjct 499693 KAGRAYHKYKAKRNCWPKTRGVAMNPVEHPHGGGNHQHIGHASTVARDSPPGKKVGLIAA 499872 Query 241 RRTGLLRGSQKTQ 253 RRTGL+RG+++ + Sbjct 499873 RRTGLIRGTKQLK 499911 > unplaced-307 Length=84991 Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/150 (29%), Positives = 67/150 (45%), Gaps = 36/150 (24%) Frame = +2 Query 76 FIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVI 135 +A +GV GQ ++ G+ + ++GN LPL ++P GT++ N+ K G+ G +AR++G Y Sbjct 54062 IVAPKGVIPGQVLHNGESVAPDIGNCLPLSAIPPGTLIHNIGLKNGEAGKIARSAGTYAQ 54241 Query 136 IIGHN------PDENKTRVR-LPSGAKKVISSDargvigviagggrvDKPLLKAGRAFHK 188 ++ +R +P GAK I + FHK Sbjct 54242 LLRTG*KGLA*IKMCSGEIRFIPVGAKATIGT---------------------VSNPFHK 54358 Query 189 YRL--------KRNSWPKTRGVAMNPVDHP 210 + +R P RGVA NPVDHP Sbjct 54359 LEILGTAGANRRRGKRPSVRGVAQNPVDHP 54448 > scaffold-17 Length=2125590 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/150 (29%), Positives = 67/150 (45%), Gaps = 36/150 (24%) Frame = +2 Query 76 FIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVI 135 +A +GV GQ ++ G+ + ++GN LPL ++P GT++ N+ K G+ G +AR++G Y Sbjct 651068 IVAPKGVVPGQVLHNGESVAPDIGNCLPLSAIPPGTLIHNIGLKNGEAGKIARSAGTYA* 651247 Query 136 IIGHN------PDENKTRVR-LPSGAKKVISSDargvigviagggrvDKPLLKAGRAFHK 188 ++ +R +P GAK I + FHK Sbjct 651248 LLRTG*KGLA*IKMCSGEIRFIPVGAKATIGT---------------------VSNPFHK 651364 Query 189 YRL--------KRNSWPKTRGVAMNPVDHP 210 + +R P RGVA NPVDHP Sbjct 651365 LEILGTAGANRRRGKRPSVRGVAQNPVDHP 651454 > scaffold-340 Length=122595 Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/40 (38%), Positives = 18/40 (45%), Gaps = 5/40 (13%) Frame = +1 Query 204 MNPVDHPHGGGNHQHI-----GKASTISRGAVSGQKAGLI 238 +NP DH H H HI K+ST+ S K LI Sbjct 49102 INPFDHKHYSTQHNHIVK*NTPKSSTVRATITSNPKLKLI 49221 > scaffold-359 Length=583372 Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 0/25 (0%) Frame = -1 Query 49 VHDSGRGAPLAKVVFRDPYKYRLRE 73 + D GR PLA +++ Y Y+LR+ Sbjct 523912 IDDDGRLVPLATIIYLYLYFYKLRD 523838 Lambda K H a alpha 0.317 0.136 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1233672374 Database: X5.fasta Posted date: Nov 6, 2021 1:14 PM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40