RID: SDJZ6AZN013 Job Title:LNAT02000021.1 Ailuropoda melanoleuca isolate Program: BLASTX Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: LNAT02000021.1 Ailuropoda melanoleuca isolate Jingjing unplaced-scaffold1, whole genome shotgun sequence Query ID: lcl|Query_21818 Length: 35014 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=LINE-1 retrotransposable element ORF2 protein;... Homo sapiens human 9606 95.9 445 6% 2e-30 34.78 1275 O00370.1 RecName: Full=LINE-1 retrotransposable element ORF2 protein;... Mus musculus house mouse 10090 97.1 282 3% 5e-27 32.32 1281 P11369.2 RecName: Full=LINE-1 reverse transcriptase homolog [Nycticebus... Nycticebus c... slow loris 9470 70.1 293 4% 2e-18 35.65 1260 P08548.1 Alignments: >RecName: Full=LINE-1 retrotransposable element ORF2 protein; Short=ORF2p; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease [Homo sapiens] Sequence ID: O00370.1 Length: 1275 Range 1: 877 to 1082 Score:95.9 bits(237), Expect:2e-30, Method:Compositional matrix adjust., Identities:72/207(35%), Positives:103/207(49%), Gaps:6/207(2%) Query 5535 LHYKATVIKIE*YWYTGKHTDQVNRLENPEIGQYMAN*FSTT*APIT--QWEKDSVLNKW 5362 L+YKATV K YWY + DQ NR E EI ++ N + P QW KDS+LNKW Sbjct 877 LYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYN-YLIFDKPEKNKQWGKDSLLNKW 935 Query 5361 CQNS*MVK*KKRKFNLYLIPCTNVISKWIRNINIKPKTIKFLEEIIGENRCSLGLDNDI* 5182 C + + +K K + +L P T + S+WI+++N+KPKTIK LEE +G +G+ D Sbjct 936 CWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIKTLEENLGITIQDIGVGKDFM 995 Query 5181 DGKNKTLVVKGKKDKLYSFKIKHLCL*K-TLSRKGKPQTGRKYLYHTCLSRSLYPEYLKN 5005 K + K K DK K+K C K T R + T + ++ T S + N Sbjct 996 SKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYN 1055 Query 5004 SYGSIIKRQTTTFFN--GHNFNRFFTK 4930 I K++T + NR F+K Sbjct 1056 ELKQIYKKKTNNPIKKWAKDMNRHFSK 1082 Range 2: 782 to 878 Score:64.3 bits(155), Expect:2e-30, Method:Compositional matrix adjust., Identities:42/99(42%), Positives:60/99(60%), Gaps:3/99(3%) Query 5825 QKNYKILLGEIKQALNNLRDIE-SHARRFYMAKLSPNILPKLIYKFNTIPEKILVRFSCI 5649 ++NYK LL EIK+ N ++I S R + K++ ILPK+IY+FN IP K+ + F Sbjct 782 KENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMA--ILPKVIYRFNAIPIKLPMTFFTE 839 Query 5648 N*QTDSKTKWKYKGSRIARAK*EKKNKVGGFTLSDCKIY 5532 +T K W K +RIA++ +KNK GG TL D K+Y Sbjct 840 LEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLY 878 Range 3: 1083 to 1192 Score:62.0 bits(149), Expect:1e-19, Method:Compositional matrix adjust., Identities:41/113(36%), Positives:55/113(48%), Gaps:12/113(10%) Query 24017 EDTRRSNKHTKKCST*LVIRGMQIKTAIDTT*PPLRIAKIKNIDNTKCW*GRGTTETLLA 23838 ED + KH KKCS+ L IR MQIKT + P+R+A IK N +CW G G TL+ Sbjct 1083 EDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLVH 1142 Query 23837 AGNAKW--------YRHSGKGLASSRLPI-YTPEIPALDVYSREKKMCVYTKT 23706 W ++ + L L I + P IP L +Y ++ K C Y T Sbjct 1143 CW---WDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCYKDT 1192 Range 4: 993 to 1080 Score:61.6 bits(148), Expect:1e-19, Method:Compositional matrix adjust., Identities:33/88(38%), Positives:51/88(57%), Gaps:7/88(7%) Query 24252 ELLEMIPKHNS*KKKLINWNFIKILNFCSTKNTNQRIKRQATGWEEIFSNHVTDIGFVSR 24073 + + PK + K K+ W+ IK+ +FC+ K T R+ RQ T WE+IF+ + +D G +SR Sbjct 993 DFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISR 1052 Query 24072 IHKEF-----SKCNN--KKQPKDLSRGY 24010 I+ E K NN KK KD++R + Sbjct 1053 IYNELKQIYKKKTNNPIKKWAKDMNRHF 1080 Range 5: 1028 to 1093 Score:46.2 bits(108), Expect:2e-08, Method:Compositional matrix adjust., Identities:30/68(44%), Positives:39/68(57%), Gaps:5/68(7%) Query 12031 RVKRQVIPQEKIFVTHITNKGLISRMYKEWLQMCK---NNTFVTD**TKDIKRYFPQEEI 12201 RV RQ EKIF T+ ++KGLISR+Y E Q+ K NN KD+ R+F +E+I Sbjct 1028 RVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKW--AKDMNRHFSKEDI 1085 Query 12202 CMGNKHEK 12225 KH K Sbjct 1086 YAAKKHMK 1093 Range 6: 1086 to 1246 Score:39.3 bits(90), Expect:2e-08, Method:Compositional matrix adjust., Identities:50/175(29%), Positives:73/175(41%), Gaps:32/175(18%) Query 12200 YAWAINMKRYLTSLIIRKLQIKTIVRYHYikliki--kkiGCTKFLWG*GVTKTLICCW- 12370 YA +MK+ +SL IR++QIKT +RYH + KK G + G G TL+ CW Sbjct 1086 YAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLVHCWW 1145 Query 12371 -V*ICATTLAKF*NYLAKLNTYICYNPTNP----FPEY----------TLKKLSYMFARS 12505 + +L L I ++P P +P+ T ++ +F Sbjct 1146 DCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCYKDTCTRMFIAALFT-- 1203 Query 12506 HIQKCS*HHFL**QR*WT*PKCPLII*WIKKFC*TYKMDCYSEIKVNILLLFALT 12670 I K W P CP +I WIKK Y M+ Y+ IK + + F T Sbjct 1204 -IAKT-----------WNQPNCPTMIDWIKKMWHIYTMEYYAAIKNDEFISFVGT 1246 Range 7: 1221 to 1265 Score:42.7 bits(99), Expect:1e-05, Method:Compositional matrix adjust., Identities:20/45(44%), Positives:29/45(64%), Gaps:0/45(0%) Query 16053 KKMWHMHTMAYYPALKKKETLQHATTRVDLEDMMPREISQSQKHK 15919 KKMWH++TM YY A+K E + T + LE ++ ++SQ QK K Sbjct 1221 KKMWHIYTMEYYAAIKNDEFISFVGTWMKLETIILSKLSQEQKTK 1265 Range 8: 1190 to 1214 Score:33.1 bits(74), Expect:1e-05, Method:Compositional matrix adjust., Identities:14/25(56%), Positives:17/25(68%), Gaps:0/25(0%) Query 16145 RDISTPVFTATLFTIAETWKQCKCP 16071 +D T +F A LFTIA+TW Q CP Sbjct 1190 KDTCTRMFIAALFTIAKTWNQPNCP 1214 >RecName: Full=LINE-1 retrotransposable element ORF2 protein; Short=ORF2p; AltName: Full=Long interspersed element-1; Short=L1; AltName: Full=Retrovirus-related Pol polyprotein LINE-1; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease [Mus musculus] Sequence ID: P11369.2 Length: 1281 Range 1: 884 to 1047 Score:97.1 bits(240), Expect:5e-27, Method:Compositional matrix adjust., Identities:53/164(32%), Positives:93/164(56%), Gaps:2/164(1%) Query 5535 LHYKATVIKIE*YWYTGKHTDQVNRLENPEIGQYM-AN*FSTT*APITQWEKDSVLNKWC 5359 L+Y+A VIK YWY + DQ NR+E+PE+ + + A QW+KDS+ N WC Sbjct 884 LYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWC 943 Query 5358 QNS*MVK*KKRKFNLYLIPCTNVISKWIRNINIKPKTIKFLEEIIGENRCSLGLDNDI*D 5179 ++ ++ ++ + + YL PCT V SKWI+ ++IKP+T+K +EE +G++ +G + Sbjct 944 WHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLN 1003 Query 5178 GKNKTLVVKGKKDKLYSFKIKHLCL*K-TLSRKGKPQTGRKYLY 5050 V+ + DK K++ C K T+++ +P T + ++ Sbjct 1004 RTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIF 1047 Range 2: 789 to 885 Score:51.6 bits(122), Expect:5e-27, Method:Compositional matrix adjust., Identities:38/99(38%), Positives:52/99(52%), Gaps:3/99(3%) Query 5825 QKNYKILLGEIKQALNNLRDIE-SHARRFYMAKLSPNILPKLIYKFNTIPEKILVRFSCI 5649 KN+K L EIK+ L +D+ S R + K++ ILPK IY+FN IP KI +F Sbjct 789 DKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMA--ILPKAIYRFNAIPIKIPTQFFNE 846 Query 5648 N*QTDSKTKWKYKGSRIARAK*EKKNKVGGFTLSDCKIY 5532 K W K RIA++ + K GG T+ D K+Y Sbjct 847 LEGAICKFVWNNKKPRIAKSLLKDKRTSGGITMPDLKLY 885 Range 3: 1084 to 1148 Score:60.1 bits(144), Expect:2e-06, Method:Compositional matrix adjust., Identities:32/65(49%), Positives:42/65(64%), Gaps:0/65(0%) Query 24035 NQRT*AEDTRRSNKHTKKCST*LVIRGMQIKTAIDTT*PPLRIAKIKNIDNTKCW*GRGT 23856 N+ E+ R + KH KKCST L+IR MQIKT + P+R+AKIKN +++CW G G Sbjct 1084 NKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGE 1143 Query 23855 TETLL 23841 TLL Sbjct 1144 RGTLL 1148 Range 4: 1227 to 1270 Score:42.0 bits(97), Expect:5e-05, Method:Compositional matrix adjust., Identities:17/44(39%), Positives:31/44(70%), Gaps:0/44(0%) Query 16053 KKMWHMHTMAYYPALKKKETLQHATTRVDLEDMMPREISQSQKH 15922 +KMW+++TM YY A+KK E ++ +DLE ++ E++ SQ++ Sbjct 1227 QKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRN 1270 Range 5: 1195 to 1222 Score:32.0 bits(71), Expect:5e-05, Method:Compositional matrix adjust., Identities:12/28(43%), Positives:19/28(67%), Gaps:0/28(0%) Query 16148 QRDISTPVFTATLFTIAETWKQCKCPQT 16065 ++D + +F A LF IA +WK+ +CP T Sbjct 1195 KKDTCSTMFIAALFIIARSWKEPRCPST 1222 >RecName: Full=LINE-1 reverse transcriptase homolog [Nycticebus coucang] Sequence ID: P08548.1 Length: 1260 Range 1: 876 to 989 Score:70.1 bits(170), Expect:2e-18, Method:Compositional matrix adjust., Identities:41/115(36%), Positives:65/115(56%), Gaps:3/115(2%) Query 5535 LHYKATVIKIE*YWYTGKHTDQVNRLENPEIGQYMAN*FSTT*API--TQWEKDSVLNKW 5362 L+YK+ VIK YW+ + D NR+EN E+ + + PI QW KDS+ NKW Sbjct 876 LYYKSIVIKTAWYWHKNREVDVWNRIENQEMDPATYH-YLIFDKPIKNIQWGKDSLFNKW 934 Query 5361 CQNS*MVK*KKRKFNLYLIPCTNVISKWIRNINIKPKTIKFLEEIIGENRCSLGL 5197 C + + ++ K + +L P T + S WI+++N++ +TIK LEE G+ + L Sbjct 935 CWVNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLRHETIKILEESAGKTLEGISL 989 Range 2: 781 to 877 Score:49.7 bits(117), Expect:2e-18, Method:Compositional matrix adjust., Identities:38/110(35%), Positives:53/110(48%), Gaps:25/110(22%) Query 5825 QKNYKILLGEIKQALNNLRDIE-SHARRFYMAKLSPNILPKLIYKFNTIP---------- 5679 ++NY+ L EI + +N ++I S R + K+S ILPK IY FN IP Sbjct 781 KENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMS--ILPKAIYNFNAIPIKAPLSYFKD 838 Query 5678 -EKILVRFSCIN*QTDSKTKWKYKGSRIARAK*EKKNKVGGFTLSDCKIY 5532 EKI++ F W K +IA+ KNK GG TL D ++Y Sbjct 839 LEKIILHFI-----------WNQKKPQIAKTLLSNKNKAGGITLPDLRLY 877 Range 3: 1010 to 1076 Score:56.6 bits(135), Expect:2e-05, Method:Compositional matrix adjust., Identities:23/67(34%), Positives:41/67(61%), Gaps:0/67(0%) Query 24198 WNFIKILNFCSTKNTNQRIKRQATGWEEIFSNHVTDIGFVSRIHKEFSKCNNKKQPKDLS 24019 W+ IK+ +FC+ KN + RQ + WE+IF+ + +D G ++RIH+E N K+ +S Sbjct 1010 WDLIKLKSFCTAKNIVSKASRQPSEWEKIFAGYTSDKGLITRIHRELKHINKKRTRDPIS 1069 Query 24018 RGYKEVK 23998 +++K Sbjct 1070 GWARDLK 1076 Range 4: 706 to 854 Score:52.4 bits(124), Expect:4e-04, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:80/156(51%), Gaps:21/156(13%) Query 10953 YAENTKETIDKSLESKRDFSRVAGYKINIQKSAEFLYMNSSQLENITE------AVHIRN 11114 Y ENT+++ K LE +++S V+GYKIN KS F+Y N++Q E + V + Sbjct 706 YLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKM 765 Query 11115 KNIKVPRSK-----YDKNYDIFMEKIIKNFFELC*IKSQ*IDISCYW-TKYPTL*TRKFP 11276 K + V +K Y +NY+ ++I ++ ++ +I C W + + P Sbjct 766 KYLGVYLTKDVKDLYKENYETLRKEIAEDV-------NKWKNIPCSWLGRINIVKMSILP 818 Query 11277 KLLF*FSALPIRFTVRW--ELDRLILTLTEYSKGPK 11378 K ++ F+A+PI+ + + +L+++IL K P+ Sbjct 819 KAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQ 854 Range 5: 1185 to 1215 Score:33.9 bits(76), Expect:0.026, Method:Compositional matrix adjust., Identities:15/31(48%), Positives:20/31(64%), Gaps:0/31(0%) Query 16157 SGSQRDISTPVFTATLFTIAETWKQCKCPQT 16065 S +DI T +F A F IA++WK+ KCP T Sbjct 1185 SQYNKDICTRMFIAAQFIIAKSWKKPKCPST 1215 Range 6: 1221 to 1260 Score:30.8 bits(68), Expect:0.026, Method:Compositional matrix adjust., Identities:16/40(40%), Positives:25/40(62%), Gaps:1/40(2%) Query 16050 KMWHMHTMAYYPALKKKETL-QHATTRVDLEDMMPREISQ 15934 K+W+M+TM YY ALKK T ++LE ++ ++SQ Sbjct 1221 KLWYMYTMEYYAALKKDGDFTSFMFTWMELEHILLSKVSQ 1260