MAST - Motif Alignment and Search Tool
MAST version 4.1.1 (Release date: Tue Apr 21 15:00:06 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed.fasta (peptide)
Last updated on Fri May 21 13:24:13 2010
Database contains 23 sequences, 4098 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 50 YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS
2 50 RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELYQRSDDNEETVANRL
3 41 DDCQNGFLLDGFPRTVAQAEALETILSELGRSIDYVININV
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.07
3 0.12 0.09
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 23 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| KAD_BACSU/5-191
|
| 8.1e-145
| 187
|
|
| KAD_BACST/5-191
|
| 3.7e-143
| 187
|
|
| KAD_LACLC/5-193
|
| 3.7e-70
| 189
|
|
| KAD_STRCO/5-192
|
| 1.1e-53
| 188
|
|
| KAD_HAEIN/5-187
|
| 5e-53
| 183
|
|
| KAD_BORPE/5-187
|
| 3.8e-47
| 183
|
|
| KAD1_ORYSJ/33-219
|
| 6.8e-47
| 187
|
|
| KAD_ECOLI/5-187
|
| 1.1e-46
| 183
|
|
| KAD1_SCHPO/8-195
|
| 6.1e-43
| 188
|
|
| KAD2_BOVIN/22-208
|
| 2.1e-39
| 187
|
|
| KAD1_YEAST/11-198
|
| 1.2e-38
| 188
|
|
| KAD2_CAEEL/31-217
|
| 1.8e-38
| 187
|
|
| KAD_PARDE/7-192
|
| 6.4e-36
| 186
|
|
| KAD_MICLU/6-165
|
| 2e-33
| 160
|
|
| KAD3_BOVIN/12-192
|
| 9.3e-33
| 181
|
|
| KAD_MYCCT/5-189
|
| 4.9e-29
| 185
|
|
| KAD4_HUMAN/10-190
|
| 7.6e-27
| 181
|
|
| KADC_MAIZE/10-189
|
| 1.3e-26
| 180
|
|
| KAD1_BOVIN/13-169
|
| 3.2e-14
| 157
|
|
| KAD1_CYPCA/13-169
|
| 3.2e-11
| 157
|
|
| KAD_SCHMA/14-170
|
| 1.6e-10
| 157
|
|
| KCY_DICDI/12-169
|
| 1.4e-07
| 158
|
|
| UMPK_YEAST/21-179
|
| 0.0014
| 159
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| KAD_BACSU/5-191
| 8.1e-145
|
|
|
| KAD_BACST/5-191
| 3.7e-143
|
|
|
| KAD_LACLC/5-193
| 3.7e-70
|
|
|
| KAD_STRCO/5-192
| 1.1e-53
|
|
|
| KAD_HAEIN/5-187
| 5e-53
|
|
|
| KAD_BORPE/5-187
| 3.8e-47
|
|
|
| KAD1_ORYSJ/33-219
| 6.8e-47
|
|
|
| KAD_ECOLI/5-187
| 1.1e-46
|
|
|
| KAD1_SCHPO/8-195
| 6.1e-43
|
|
|
| KAD2_BOVIN/22-208
| 2.1e-39
|
|
|
| KAD1_YEAST/11-198
| 1.2e-38
|
|
|
| KAD2_CAEEL/31-217
| 1.8e-38
|
|
|
| KAD_PARDE/7-192
| 6.4e-36
|
|
|
| KAD_MICLU/6-165
| 2e-33
|
|
|
| KAD3_BOVIN/12-192
| 9.3e-33
|
|
|
| KAD_MYCCT/5-189
| 4.9e-29
|
|
|
| KAD4_HUMAN/10-190
| 7.6e-27
|
|
|
| KADC_MAIZE/10-189
| 1.3e-26
|
|
|
| KAD1_BOVIN/13-169
| 3.2e-14
|
|
|
| KAD1_CYPCA/13-169
| 3.2e-11
|
|
|
| KAD_SCHMA/14-170
| 1.6e-10
|
|
|
| KCY_DICDI/12-169
| 1.4e-07
|
|
|
| UMPK_YEAST/21-179
| 0.0014
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
KAD_BACSU/5-191
LENGTH = 187 COMBINED P-VALUE = 3.51e-146 E-VALUE = 8.1e-145
DIAGRAM: 19-[1]-1-[3]-7-[2]-19
[1] [3]
6.1e-57 9.2e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++++++++++++++++++++++++++++++++++++++++++++++++++ +++++
1 LMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCER
[2]
45 3.7e-57
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCG
++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++
76 GFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDG
GELYQRSDDNEETVANRL
++++++++++++++++++
151 GELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGY
KAD_BACST/5-191
LENGTH = 187 COMBINED P-VALUE = 1.60e-144 E-VALUE = 3.7e-143
DIAGRAM: 19-[1]-1-[3]-7-[2]-19
[1] [3]
5.4e-59 1.5e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++++++++++++++++++++++++++++++++++++++++++++++++++ +++++
1 LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQN
[2]
39 1.2e-58
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCG
+++++++++++++++++++ + ++++++++++++++ ++++++++++++++++++++++++++++++++
76 GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCG
GELYQRSDDNEETVANRL
++++++++++++++++++
151 GELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGY
KAD_LACLC/5-193
LENGTH = 189 COMBINED P-VALUE = 1.62e-71 E-VALUE = 3.7e-70
DIAGRAM: 19-[1]-2-[3]-7-[2]-20
[1] [3]
3.0e-45 5.1e
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQ
++ +++++++++++++++++++ ++++++++++++++++++++++++ + +
1 IMGLPGAGKGTQAEFIVKNYGVNHISTGDMFRAAMKNETEMGKLAKSFIDKGELVPDEVTNGIVKERLAQDDIKA
[2]
-21 2.4e-17
NGFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKC
++++++ +++ ++ ++ + +++++ +++++ ++ + ++ ++ ++++++++++ ++++ ++ + ++ +
76 SGFLLDGYPRTIDQAHALDTMLEELGIKLDAVVNIVVNPNILVDRLSGRYICRNCGATYHKIFNPTKVEGTCDVC
GGELYQRSDDNEETVANRL
+ + +
151 GSHDLYQRADDVPETVKNRLDVNIKESAPIIEHYTELGL
KAD_STRCO/5-192
LENGTH = 188 COMBINED P-VALUE = 4.95e-55 E-VALUE = 1.1e-53
DIAGRAM: 19-[1]-1-[3]-8-[2]-19
[1] [3]
7.3e-25 1.7e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++++++++ +++ + ++++ +++++ + ++++++++ + + +++
1 LVGPPGAGKGTQATRLAETLHIPHISTGDLFRANISQQTELGKLAKSYMNAGNLVPDEVTIAMAKDRMEQPDAEG
[2]
21 1.5e-20
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKC
+++++++++ + +++++ ++++ + ++++++ + + + + + ++++ ++++ +
76 GFLLDGFPRNVSQAEALDELLETEGMKLDAVLDLEAPEDEVVKRIAGRRVCRNEPKHVFHVTYTPPKKEGVCDVC
GGELYQRSDDNEETVANRL
++++++++++ ++++ +++
151 GGELYQRDDDSEETVRKRLEVYHTQTEPIIDYYKSQGL
KAD_HAEIN/5-187
LENGTH = 183 COMBINED P-VALUE = 2.18e-54 E-VALUE = 5e-53
DIAGRAM: 19-[1]-1-[3]-3-[2]-19
[1] [3]
4.8e-31 7.5e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++++ ++++++++++++++++++ +++ ++ + +++++ + ++ + ++ +
1 LLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKAGTELGKQAKALMDEGKLVPDELTVALVKDRIAQADCTN
[2]
14 2.7e-21
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELY
++++++++++ +++ ++ ++ + ++ + +++ + +++ +++++++ ++ + + ++
76 GFLLDGFPRTIPQADALKDSGVKIDFVLEFDVPDEVIVERMSGRRVHQASGRSYHIVYNPPKVEGKDDVTGEDLI
QRSDDNEETVANRL
+++++ +++ ++
151 IRADDKPETVLDRLAVYHKQTSPLIDYYQAEAK
KAD_BORPE/5-187
LENGTH = 183 COMBINED P-VALUE = 1.67e-48 E-VALUE = 3.8e-47
DIAGRAM: 19-[1]-1-[3]-3-[2]-19
[1] [3]
7.0e-31 1.0e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++++ ++++++ +++++++++++++++ ++ + ++ + ++ ++ ++ ++++
1 LLGPPGAGKGTQAAFLTQHYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGGLVSDDLIIGLVRDRLTQPDCAN
[2]
09 1.3e-19
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELY
+ + ++++++ +++ ++ ++ + ++ + + +++ +++++ ++ + + +
76 GYLFDGFPRTIPQADALKSAGIALDYVVEIEVPESDIIERMSERRVHPASGRSYHVRFNPPKAEGVDDVTGEPLV
QRSDDNEETVANRL
+++++ ++++ ++
151 QRDDDREETVRHRLNVYQNQTRPLVDYYSSWAQ
KAD1_ORYSJ/33-219
LENGTH = 187 COMBINED P-VALUE = 2.94e-48 E-VALUE = 6.8e-47
DIAGRAM: 19-[1]-1-[3]-7-[2]-19
[1] [3]
1.4e-20 1.3e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
+ + ++++ ++++ + ++++ +++ +++++++ + + ++ + +++
1 LVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQK
[2]
18 7.7e-21
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCG
++ ++++++++ +++ + + + +++++ +++ + +++++ + + ++++ + ++++++ + +
76 GFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTG
GELYQRSDDNEETVANRL
+ ++ ++ ++ ++
151 EPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGI
KAD_ECOLI/5-187
LENGTH = 183 COMBINED P-VALUE = 4.92e-48 E-VALUE = 1.1e-46
DIAGRAM: 19-[1]-1-[3]-3-[2]-19
[1] [3]
1.1e-27 1.2e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++++ ++++++ +++++ + +++ +++ ++ + ++ ++ ++ ++++ +++ +
1 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRN
[2]
12 2.2e-19
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELY
++++++++++ +++ + + + + + + +++ + ++ ++++++ ++ + + ++
76 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELT
QRSDDNEETVANRL
+ ++ ++++ +++
151 TRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAE
KAD1_SCHPO/8-195
LENGTH = 188 COMBINED P-VALUE = 2.67e-44 E-VALUE = 6.1e-43
DIAGRAM: 19-[1]-2-[3]-7-[2]-19
[1] [3]
4.6e-16 2.6e
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQ
+++ + ++++ + + ++++ +++ ++ + ++ + + + + ++
1 LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIVTGMIKDEILNNPECK
[2]
-18 1.3e-21
NGFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKC
+++ ++++++++ +++ +++++ ++ + ++ + + +++ + + ++++++++++++ + +
76 NGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVT
GGELYQRSDDNEETVANRL
+ + ++++++ +++
151 GEPLIQRSDDNADALRKRLVTYHEQTTPVVEFYKKKGK
KAD2_BOVIN/22-208
LENGTH = 187 COMBINED P-VALUE = 9.31e-41 E-VALUE = 2.1e-39
DIAGRAM: 19-[1]-1-[3]-7-[2]-19
[1] [3]
9.5e-14 2.3e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
+ + ++++ ++ + + +++ + + ++ + ++ ++ + + +++
1 LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKN
[2]
17 2.9e-21
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCG
+++++++++++ +++ + +++ +++ ++ + +++ + + + ++++++++++++ + + +
76 GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG
GELYQRSDDNEETVANRL
+ ++++++ ++
151 EPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGI
KAD1_YEAST/11-198
LENGTH = 188 COMBINED P-VALUE = 5.30e-40 E-VALUE = 1.2e-38
DIAGRAM: 19-[1]-2-[3]-7-[2]-19
[1] [3]
5.7e-14 3.4e
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQ
+ + ++++ + + ++ ++++++ ++ + ++ + + + ++
1 LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK
[2]
-17 1.9e-20
NGFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKC
+++ +++++++ ++++ + +++ ++++ + + + +++ + + + +++ +++++++ + +
76 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVT
GGELYQRSDDNEETVANRL
+ + ++++++ +++
151 GEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGI
KAD2_CAEEL/31-217
LENGTH = 187 COMBINED P-VALUE = 7.68e-40 E-VALUE = 1.8e-38
DIAGRAM: 19-[1]-1-[3]-7-[2]-19
[1] [3]
6.1e-13 6.7e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
+ + +++ ++ + + + + + + ++ + ++ ++++ + ++
1 FIGPPGSGKGTQAPAFAQKYFSCHLATGDLLRAEVASGSEFGKELKATMDAGKLVSDEVVCKLIEQKLEKPECKY
[2]
16 1.4e-22
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCG
++ +++++++ +++ + ++++ ++++ + + + +++ + ++++++ +++++ + ++ +
76 GFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNIADDLLVRRITGRLFHIASGRSYHLEFKPPKVPMKDDLTG
GELYQRSDDNEETVANRL
+ ++++++++ +++
151 EPLIRRSDDNEETLRKRLVQYHQMTVPLVDYYKKHGV
KAD_PARDE/7-192
LENGTH = 186 COMBINED P-VALUE = 2.78e-37 E-VALUE = 6.4e-36
DIAGRAM: 19-[1]-47-[2]-20
[1]
3.9e-19
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS
+ +++++ + + +++++ +++++++ ++ +++ ++ ++
1 LLGPPGAGKGTQARRLIDERGLVQLSTGDMLREARSSGTEMGKRVAEVMDRGELVTDEIVIGLIREKLGQGGKGF
[2]
8.7e-14
RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGE
+ ++ + +++ ++ + + +++++++ ++
76 IFDGFPRTLAQADALQALMAEMDQRIDAVIEMRVDDAALVSRISGRFTCGNCGEVYHDVTKPTKEPGKCDVCGST
LYQRSDDNEETVANRL
+ + + +
151 DLRRRADDNEESLKTRLMEYYKKTSPLIGYYYVKGN
KAD_MICLU/6-165
LENGTH = 160 COMBINED P-VALUE = 8.75e-35 E-VALUE = 2e-33
DIAGRAM: 19-[1]-1-[3]-49
[1] [3]
5.3e-25 1.1e-
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQN
++ +++++ ++ ++ ++++ +++ ++++++ +++++++ + + +++
1 LMGPPGSGKGTQATRIADKLGIVPISTGDIFRHNVKSMTPLGVEAKRYIDNGDFVPDEVTNRMVADRIAQADAEH
16
GFLLDGFPRTVAQAEALETILSELGRSIDYVININV
++++++ +++ + +++ + + + + ++ ++ ++
76 GFLLDGYPRTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDLYHRETES
KAD3_BOVIN/12-192
LENGTH = 181 COMBINED P-VALUE = 4.03e-34 E-VALUE = 9.3e-33
DIAGRAM: 19-[1]-[3]-2-[2]-19
[1] [3]
2.1e-13 5.2e-0
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLSDDCQNG
+ + + ++ + + +++ + ++ +++ + + ++ + + + +
1 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQYN
[2]
8 4.0e-24
FLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELYQR
++++++++ ++++++ + + +++ +++ + + + +++++++ ++ ++ + + ++
76 WLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQR
SDDNEETVANRL
+++ +++ +++
151 EDDRPETVVKRLKAYEAQTEPVLEYYRKKGV
KAD_MYCCT/5-189
LENGTH = 185 COMBINED P-VALUE = 2.11e-30 E-VALUE = 4.9e-29
DIAGRAM: 19-[1]-47-[2]-19
[1]
7.6e-14
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS
+ ++++ + + ++ ++++ ++ + +++ ++ ++ +
1 LLGAPGCGKGTQAEQLVNKLNFIQVSTGDLMRKEISLNTTLGLKCQEYMNAGKYVPDQIVNQIVNQFLQYNNDKL
[2]
1.8e-15
RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGE
+ + + ++ + ++ ++ +++ + ++ + +
76 IFDGYPRTLEQAKSLEKMLDLYNKKIDYVFYIDVNEQILIKRITNRLVCPLCKASFNLETRKPKQEGLCDFDNTK
LYQRSDDNEETVANRL
+ ++++ + ++
151 LVKRSDDSLDKVKIRLQTYKEQTLPLIDYFKTNSK
KAD4_HUMAN/10-190
LENGTH = 181 COMBINED P-VALUE = 3.32e-28 E-VALUE = 7.6e-27
DIAGRAM: 19-[1]-[3]-2-[2]-19
[1] [3]
5.5e-14 2.3e-0
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLSDDCQNG
++ + + + + +++ ++ + +++++ + ++++ + +
1 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH
[2]
6 4.1e-19
FLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELYQR
++++++++ +++++ + + ++ +++ + + + + ++++ + ++ + + + +
76 WLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQ
SDDNEETVANRL
++++ + ++ ++
151 EDDKPEAVAARLRQYKDVAKPVIELYKSRGV
KADC_MAIZE/10-189
LENGTH = 180 COMBINED P-VALUE = 5.53e-28 E-VALUE = 1.3e-26
DIAGRAM: 19-[1]-2-[3]-3-[2]-15
[1] [3]
6.2e-21 4.9e
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQ
+ +++ ++ ++ + ++ + + ++ ++ ++ +++++ + +++++ + +
1 ISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQE
[2]
-11 3.0e-07
NGFLLDGFPRTVAQAEALETILSELGRSIDYVININV RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGEL
++ ++++ ++ ++ +++++ ++ + + + +++ ++ ++ +++ + ++ +
76 NGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRF
YQRSDDNEETVANRL
+ + +
151 DDTEEKVKLRLETYYQNIESLLSTYENIIV
KAD1_BOVIN/13-169
LENGTH = 157 COMBINED P-VALUE = 1.37e-15 E-VALUE = 3.2e-14
DIAGRAM: 19-[1]-2-[3]-45
[1] [3]
3.2e-11 1.4e
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQ
++ + ++++ ++ + + + + ++ +++ + + + +
1 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTS
-07
NGFLLDGFPRTVAQAEALETILSELGRSIDYVININV
++++ ++ ++ + + ++ + + + +
76 KGFLIDGYPREVQQGEEFERRIAQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIA
KAD1_CYPCA/13-169
LENGTH = 157 COMBINED P-VALUE = 1.37e-12 E-VALUE = 3.2e-11
DIAGRAM: 19-[1]-2-[3]-45
[1] [3]
1.3e-11 5.6e
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS DDCQ
++ + + ++ ++ + + + + + + ++++++ + + +
1 VVGGPGSGKGTQCEKIVEKYGYTHLSSGDLLRAEVASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVS
-06
NGFLLDGFPRTVAQAEALETILSELGRSIDYVININV
++ + ++ ++ + + ++ + + +
76 KGYLIDGYPREVKQGEEFEKKIGAPALLLYIDAKAETMVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIA
KAD_SCHMA/14-170
LENGTH = 157 COMBINED P-VALUE = 6.89e-12 E-VALUE = 1.6e-10
DIAGRAM: 19-[1]-88
[1]
1.2e-14
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS
+ + + ++ ++ + + + + + + + ++++++ +++ ++
1 VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMINWLTKI
KCY_DICDI/12-169
LENGTH = 158 COMBINED P-VALUE = 6.02e-09 E-VALUE = 1.4e-07
DIAGRAM: 19-[1]-20-[2]-19
[1]
4.1e-08
YNIPHISTGDMFRAAMKNETPLGLQAKSYMDKGHLVPDEVTIGIVRERLS
++ + + ++ + + + + +++ ++ ++ +
1 VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKN
[2]
1.1e-05
RLTGRWICSVCGATYHLVFNPPAKPGVCDKCGGELYQRSDDNEETVANRL
+ + + + + ++ +++++++ ++
76 FLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVI
UMPK_YEAST/21-179
LENGTH = 159 COMBINED P-VALUE = 5.88e-05 E-VALUE = 0.0014
DIAGRAM: 73-[3]-45
[3
1.
DD
1 VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKA
]
8e-05
CQNGFLLDGFPRTVAQAEALETILSELGRSIDYVININV
+ ++ +++++ ++ + + + +
76 NKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPV
Debugging Information
CPU: kodomo-count
Time 0.088006 secs.
mast ./memeout.txt -d ./seed.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information