Аннотирование фрагмента генома Klebsiella pneumoniae


                                                               	      Score   E
Sequences producing significant alignments:                          (bits) Value

P40734 FHLA_SALTY Formate hydrogenlyase transcriptional activator.   1155   0.0  
Q8ZMI5 Q8ZMI5_SALTY Putative hydrogenase expression/formation pr...   497   e-141
Q8ZL24 Q8ZL24_SALTY Putative glycosyl hydrolase family.               441   e-124
Q8ZMI6 Q8ZMI6_SALTY Putative hydrogenase expression/formation pr...   330   1e-90
P25852 ZRAR_SALTY Transcriptional regulatory protein zraR.            265   5e-71
Q8ZMJ8 NORR_SALTY Anaerobic nitric oxide reductase transcription...   255   4e-68
Q8ZN32 Q8ZN32_SALTY Putative transcriptional regulator of two-co...   238   6e-63
P41789 NTRC_SALTY Nitrogen regulation protein NR(I).                  236   2e-62
Q8ZP59 Q8ZP59_SALTY Transcription activator.                          202   5e-52
Q8ZNC3 Q8ZNC3_SALTY Putative regulatory protein.                      200   1e-51
Q8ZQZ3 Q8ZQZ3_SALTY Putative sigma-54 dependent transcriptional ...   199   2e-51
P74839 PRPR_SALTY Propionate catabolism operon regulatory protein.    191   7e-49
P0A2D7 TYRR_SALTY Transcriptional regulatory protein tyrR.            189   3e-48
Q8ZPU4 Q8ZPU4_SALTY PTS family sugar specific enzyme II for cell...   151   8e-37
Q8ZM78 Q8ZM78_SALTY 6-phospho-beta-glucosidase A (EC 3.2.1.86).       149   3e-36
Q8ZLH7 Q8ZLH7_SALTY Sigma N (Sigma 54)-dependent regulator of rt...   144   1e-34
P26466 LAMB_SALTY Maltoporin precursor (Maltose-inducible porin).     112   5e-25
Q8ZJY3 Q8ZJY3_SALTY Putative NtrC family transcriptional regulat...    96   4e-20
P06184 PGTA_SALTY Phosphoglycerate transport system transcriptio...    91   2e-18
Q8ZR51 Q8ZR51_SALTY Putative inner membrane protein.                   83   3e-16
Q8ZL25 Q8ZL25_SALTY Putative NtrC family transcriptional regulator.    82   6e-16
Q7CQP2 Q7CQP2_SALTY PTS family sugar specific enzyme IIB for cel...    69   7e-12
P55881 THIL_SALTY Thiamine-monophosphate kinase (EC 2.7.4.16) (T...    50   4e-06




P40734 FHLA_SALTY Formate hydrogenlyase transcriptional activator.   1155   0.0  
Q8ZMI5 Q8ZMI5_SALTY Putative hydrogenase expression/formation pr...   497   e-141
Q8ZL24 Q8ZL24_SALTY Putative glycosyl hydrolase family.               441   e-124
Q8ZMI6 Q8ZMI6_SALTY Putative hydrogenase expression/formation pr...   330   1e-90
Q8ZPU4 Q8ZPU4_SALTY PTS family sugar specific enzyme II for cell...   151   8e-37
P26466 LAMB_SALTY Maltoporin precursor (Maltose-inducible porin).     112   5e-25
Q7CQP2 Q7CQP2_SALTY PTS family sugar specific enzyme IIB for cel...    69   7e-12




P40734 FHLA_SALTY Formate hydrogenlyase transcriptional activator.
          Length = 692
1812 - 3878



Q8ZMI5_SALTY Putative hydrogenase expression/formation
            protein.
607 - 1572



Q8ZL24_SALTY Putative glycosyl hydrolase family.
          Length = 460
5332 - 3953



Q8ZMI6_SALTY Putative hydrogenase expression/formation
           protein.
          Length = 372
2 - 565



Q8ZPU4_SALTY PTS family sugar specific enzyme II for cellobiose,
             arbutin, and salicin.
          Length = 452
10171 - 9227



LAMB_SALTY Maltoporin precursor (Maltose-inducible porin).
          Length = 452
8835 - 7597



Q7CQP2_SALTY PTS family sugar specific enzyme IIB for
             cellobiose, arbutin, and salicin (EC 2.7.1.69).
          Length = 106
10641 - 10940







   Гипотетические гены во фрагменте 3993583 - 4004583



 3' --------------------------------------------------------------------------

 5' ---[=> ген Q8ZMI6, 2 - 565]---[=> ген Q8ZMI5, 607 - 1572]—----------------



 ------------------------------------------------[<= ген Q8ZL24, 3953 - 5332]-

 -[=> ген FHLA, 1812 - 3878 (3995394 - 3997460)]------------------------------



 -[<= ген LAMB, 7597 - 8835]---[<= ген Q8ZPU4,  9227 - 10171]-------------- 5'

 ----------------------------------------[=> ген Q7CQP2, 10641 -10940]----- 3'



 Командой seqret была получена последовательность 3993583 - 4004583 из файла kpn_genome.fasta.
 Командой formatdb были получены индексные файлы протеома.
 Командой blastx были найдены аминокислотные последовательности данного протеома,
схожие с аминокислотными последовательностями, закодированными в полученной нуклеотидной последовательности.




 Список команд

seqret kpn_genome.fasta -sask
formatdb -i salty_proteome.fasta -p T -n Index_file
blastall -p blastx -d Index_file -i KPN.fasta -o File -e 0.001






Query "((([uniprot-Organism:Salmonella*] & [uniprot-Organism:typhimurium*]) | [uniprot-Organism:Salmonella typhimurium*]) &
(((((([uniprot-AccNumber:P40734*] | [uniprot-AccNumber:Q8ZMI5*]) | [uniprot-AccNumber:Q8ZL24*]) |
|[uniprot-AccNumber:Q8ZMI6*]) | [uniprot-AccNumber:P26466*]) | [uniprot-AccNumber:Q8ZPU4*]) |
|[uniprot-AccNumber:Q7CQP2*])) " found 7 entries


 Найденные гены в геноме Salmonella typhimurium				Klebsiella pneumoniae

Q8ZL24_SALTY	522 - 1911	gene="STM3775"				3953 - 5332
Q7CQP2_SALTY	3444 - 3777	gene="celA"				10641 - 10940
Q8ZPU4_SALTY	3846 - 5218	gene="celB"				9227 - 10171
Q8ZMI6_SALTY	11320 - 12449	gene="hypD"				2 - 565
Q8ZMI5_SALTY	12482 - 13456	gene="hypE"				607 - 1572
FHLA_SALTY	13662 - 15753	gene="fhlA"				1812 - 3878 (3995394 - 3997460)
LAMB_SALTY	18935 - 20304	gene="lamB"				7597 - 8835
   Расположение генов белка Q8ZMI6_SALTY и белка Q8ZMI5_SALTY

1   4
2   7
3   6
4   1
5   2
6   3
7   5

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