RID: A8J7ZP5X014 Job Title:MERS BLAST Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: Query ID: lcl|Query_32939 Length: 524 Sequences producing significant alignments: Max Total Query E Per. Description Score Score cover Value Ident Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1100 1100 100% 0.0 100.00 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 1033 1033 100% 0.0 91.79 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 977 977 100% 0.0 86.45 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 968 968 100% 0.0 85.50 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 708 708 99% 0.0 63.12 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 706 706 99% 0.0 63.12 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 706 706 99% 0.0 62.93 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 704 704 99% 0.0 62.74 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 656 656 100% 0.0 59.13 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 642 642 99% 0.0 58.29 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 641 641 99% 0.0 57.90 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 641 641 99% 0.0 57.90 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 639 639 99% 0.0 57.71 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 638 638 99% 0.0 57.90 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 636 636 99% 0.0 57.71 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 632 632 99% 0.0 57.33 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 629 629 99% 0.0 58.10 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 628 628 99% 0.0 57.47 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 625 625 99% 0.0 57.28 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 620 620 99% 0.0 56.70 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 568 568 98% 0.0 54.84 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 567 567 98% 0.0 54.95 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 546 546 99% 2e-173 50.86 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 546 546 99% 2e-173 50.86 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 545 545 99% 5e-173 50.67 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 541 541 99% 8e-172 51.15 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 538 538 98% 7e-171 51.74 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 537 537 99% 2e-170 51.63 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 530 530 98% 5e-168 50.00 P0C6W0.1 RecName: Full=Tryptophan synthase alpha chain [Streptococcus... 33.1 33.1 16% 4.7 28.57 A8AW06.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... 33.1 33.1 24% 8.7 24.44 Q008X6.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 5909 to 6432 Score:1100 bits(2844), Expect:0.0, Method:Compositional matrix adjust., Identities:524/524(100%), Positives:524/524(100%), Gaps:0/524(0%) Query 1 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF 60 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF Sbjct 5909 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF 5968 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ Sbjct 5969 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ 6028 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 PVGVVDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY Sbjct 6029 PVGVVDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 6088 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF Sbjct 6089 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 6148 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS Sbjct 6149 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 6208 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV Sbjct 6209 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 6268 Query 361 QQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH 420 QQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH Sbjct 6269 QQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH 6328 Query 421 AFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAV 480 AFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAV Sbjct 6329 AFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAV 6388 Query 481 CRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 CRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ Sbjct 6389 CRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 6432 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 6000 to 6523 Score:1033 bits(2672), Expect:0.0, Method:Compositional matrix adjust., Identities:481/524(92%), Positives:509/524(97%), Gaps:0/524(0%) Query 1 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF 60 SQIVTGL+KDCSRE+SGL PAYAPTYVSVDDKYKTSDELCVNLN+PANVPYSRVISRMGF Sbjct 6000 SQIVTGLYKDCSRESSGLHPAYAPTYVSVDDKYKTSDELCVNLNVPANVPYSRVISRMGF 6059 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLDA++P YPKLFITR+EA+RQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ Sbjct 6060 KLDASIPNYPKLFITRDEAIRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ 6119 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 PVGVVDTEWG+MLT IAARPPPGEQFKHLVPLM+KGAAWPIVRRRIVQMLSDTLDKLSDY Sbjct 6120 PVGVVDTEWGSMLTSIAARPPPGEQFKHLVPLMNKGAAWPIVRRRIVQMLSDTLDKLSDY 6179 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 CTFVCWAHGFELTSASYFCKIGKEQ+CCMCNRRA+ YSSPL SYACW+HS GYDYVYNPF Sbjct 6180 CTFVCWAHGFELTSASYFCKIGKEQRCCMCNRRASTYSSPLHSYACWSHSSGYDYVYNPF 6239 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 FVDVQQWGY+GNLATNHDRYCSVHQGAHVASNDA+MTRCLAIH CFIERV+WDI YPYIS Sbjct 6240 FVDVQQWGYIGNLATNHDRYCSVHQGAHVASNDAVMTRCLAIHDCFIERVEWDITYPYIS 6299 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 HEK+LNSCCR VERNVVRAALLAG F++VYDIGNPKGIPIVDDPVVDWHY+DAQPL++KV Sbjct 6300 HEKRLNSCCRAVERNVVRAALLAGRFERVYDIGNPKGIPIVDDPVVDWHYYDAQPLSKKV 6359 Query 361 QQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH 420 QQLFYTED A F+DGLCLFWNCNVP+YPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH Sbjct 6360 QQLFYTEDCAKNFSDGLCLFWNCNVPRYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH 6419 Query 421 AFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAV 480 AFHTPAYD SAFRDLKPLPFFYYSTTPCEVHGNG+M+EDIDYVPLKSAVCITACNLGGAV Sbjct 6420 AFHTPAYDASAFRDLKPLPFFYYSTTPCEVHGNGNMLEDIDYVPLKSAVCITACNLGGAV 6479 Query 481 CRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 CRKHA EYR+YMEAYNLVSASGFRLWCYKTFD+YNLWSTFTK+Q Sbjct 6480 CRKHAAEYRDYMEAYNLVSASGFRLWCYKTFDVYNLWSTFTKIQ 6523 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 5960 to 6482 Score:977 bits(2525), Expect:0.0, Method:Compositional matrix adjust., Identities:453/524(86%), Positives:498/524(95%), Gaps:1/524(0%) Query 1 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF 60 SQIVTGLFKDCSRE GL PAYAPTY+SVD KYKT+DELCVNLN+ NV YSRVISRMGF Sbjct 5960 SQIVTGLFKDCSREDVGLPPAYAPTYLSVDAKYKTTDELCVNLNITPNVTYSRVISRMGF 6019 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLDAT+PGYPKLFITR+EA+RQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ Sbjct 6020 KLDATIPGYPKLFITRDEAIRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ 6079 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 PVGVVDTEWG+MLT I+ARPPPGEQFKHLVPLM+KGA WPIVRRRIVQMLSDTLDKLSDY Sbjct 6080 PVGVVDTEWGSMLTTISARPPPGEQFKHLVPLMNKGATWPIVRRRIVQMLSDTLDKLSDY 6139 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 CTFVCWAHGFELTSASYFCKIGKEQ+CCMC+RRA+ +SSPLQSYACW+HS GYDYVYNPF Sbjct 6140 CTFVCWAHGFELTSASYFCKIGKEQRCCMCSRRASTFSSPLQSYACWSHSSGYDYVYNPF 6199 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 FVDVQQWGYVGNLATNHDRYC +H GAHVAS+DAIMTRCLAI+ CFIERVDWD+ YPYIS Sbjct 6200 FVDVQQWGYVGNLATNHDRYCGIHAGAHVASSDAIMTRCLAIYDCFIERVDWDVTYPYIS 6259 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 HE+KLNSCCR VERNVVR+A+L+G FDK+YDIGNPKGIPI+ +P V+WH++DAQPL+ KV Sbjct 6260 HEQKLNSCCRTVERNVVRSAVLSGKFDKIYDIGNPKGIPIISEP-VEWHFYDAQPLSNKV 6318 Query 361 QQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH 420 ++LFYT+D+A +F DGLCLFWNCNV KYP+NA+VCRFDTRVHSEFNLPGC+GGSLYVNKH Sbjct 6319 KKLFYTDDVAKQFEDGLCLFWNCNVSKYPSNAVVCRFDTRVHSEFNLPGCNGGSLYVNKH 6378 Query 421 AFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAV 480 AFHTPAYD++AFRDLKPLPFFYYSTTPCEVHG+G+M+EDIDYVPLKSAVCITACNLGGAV Sbjct 6379 AFHTPAYDINAFRDLKPLPFFYYSTTPCEVHGSGNMLEDIDYVPLKSAVCITACNLGGAV 6438 Query 481 CRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 CRKHA EYR+YMEAYN+VSA+GFRLW YKTFDIYNLWSTF KVQ Sbjct 6439 CRKHAAEYRDYMEAYNIVSAAGFRLWVYKTFDIYNLWSTFVKVQ 6482 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 5953 to 6475 Score:968 bits(2503), Expect:0.0, Method:Compositional matrix adjust., Identities:448/524(85%), Positives:497/524(94%), Gaps:1/524(0%) Query 1 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF 60 SQIVTGLFKDCSRE +GL PAYAPTY+SVD KYKT+DELCVNLN+ NV YSRVISRMGF Sbjct 5953 SQIVTGLFKDCSREDTGLPPAYAPTYLSVDAKYKTTDELCVNLNITPNVTYSRVISRMGF 6012 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLDAT+PGYPKLFITR+EA+RQVRSW+GFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ Sbjct 6013 KLDATIPGYPKLFITRDEAIRQVRSWVGFDVEGAHASRNACGTNVPLQLGFSTGVNFVVQ 6072 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 PVGVVDTEWG+MLT I+ARPPPGEQFKHLVPLM+KGA WPIVRRRIVQMLSDTLDKLSDY Sbjct 6073 PVGVVDTEWGSMLTTISARPPPGEQFKHLVPLMNKGATWPIVRRRIVQMLSDTLDKLSDY 6132 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 CTFVCWAHGFELTSASYFCKIGKEQ+C MC+RRA+ +SSPLQSYACW+HS GYDYVYNPF Sbjct 6133 CTFVCWAHGFELTSASYFCKIGKEQRCSMCSRRASTFSSPLQSYACWSHSSGYDYVYNPF 6192 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 FVDVQQWGYVGNLATNHDRYC +H GAHVAS+DAIMTRCLAI+ CFIERVDWD+ YPYIS Sbjct 6193 FVDVQQWGYVGNLATNHDRYCGIHAGAHVASSDAIMTRCLAIYDCFIERVDWDVTYPYIS 6252 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 HE+KLNSCCR VERNVVR+A+L+G F+K+YDIGNPKGI I+ +P V+WH++DAQPL+ KV Sbjct 6253 HEQKLNSCCRTVERNVVRSAVLSGKFEKIYDIGNPKGIAIISEP-VEWHFYDAQPLSNKV 6311 Query 361 QQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKH 420 ++LFYT+D++ +F DGLCLFWNCNV KYP+NA+VCRFDTRVHSEFNLPGC+GGSLYVNKH Sbjct 6312 KKLFYTDDVSKQFEDGLCLFWNCNVSKYPSNAVVCRFDTRVHSEFNLPGCNGGSLYVNKH 6371 Query 421 AFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAV 480 AFHTPAYD++AFRDLKPLPFFYYSTTPCEVHG+G+M+EDIDYVPLKSAVCITACNLGGAV Sbjct 6372 AFHTPAYDINAFRDLKPLPFFYYSTTPCEVHGSGNMLEDIDYVPLKSAVCITACNLGGAV 6431 Query 481 CRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 CRKHA EYR+YMEAYN+VSA+GFRLW YKTFDIYNLWSTF KVQ Sbjct 6432 CRKHAAEYRDYMEAYNIVSAAGFRLWVYKTFDIYNLWSTFVKVQ 6475 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 5912 to 6435 Score:708 bits(1827), Expect:0.0, Method:Compositional matrix adjust., Identities:332/526(63%), Positives:407/526(77%), Gaps:7/526(1%) Query 4 VTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNL-NLPANVPYSRVISRMGFKL 62 VTGLFKDCS+ +GL P APT++SVD K+KT + LCV++ +P ++ Y R+IS MGFK+ Sbjct 5912 VTGLFKDCSKIITGLHPTQAPTHLSVDTKFKT-EGLCVDIPGIPKDMTYRRLISMMGFKM 5970 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 + V GYP +FITREEA+R VR+WIGFDVEG HA+R+A GTN+PLQLGFSTGVN V P Sbjct 5971 NYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPT 6030 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G VDTE T + A+PPPG+QFKHL+PLM+KG W +VR +IVQMLSDTL LSD Sbjct 6031 GYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVV 6090 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV WAHGFELTS YF KIG E+ CC+C+RRA +S+ +YACW HS G+DYVYNPF + Sbjct 6091 FVLWAHGFELTSMKYFVKIGPERTCCLCDRRATCFSTSSDTYACWNHSVGFDYVYNPFMI 6150 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 DVQQWG+ GNL +NHD++C VH AHVAS DAIMTRCLA+H CF++RVDW +EYP I E Sbjct 6151 DVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE 6210 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTR---K 359 K+N+ CR V+ VV++ALLA F ++DIGNPK I V VDW ++DAQP + K Sbjct 6211 LKINAACRKVQHMVVKSALLADKFSVLHDIGNPKAIKCVPQAEVDWKFYDAQPCSDKAYK 6270 Query 360 VQQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVN 418 +++LFY+ +F DG+CLFWNCNV +YP NAIVCRFDTRV S NLPGCDGGSLYVN Sbjct 6271 IEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVN 6330 Query 419 KHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGG 478 KHAFHTPA+D SAF LK LPFFYYS +PCE HG ++ DIDYVPLKSA CIT CNLGG Sbjct 6331 KHAFHTPAFDKSAFTYLKQLPFFYYSDSPCESHGK-QVVSDIDYVPLKSATCITRCNLGG 6389 Query 479 AVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 AVCR+HA EYR+Y++AYN++ ++GF LW YK FD YNLW+TFT++Q Sbjct 6390 AVCRRHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQ 6435 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 5900 to 6423 Score:706 bits(1822), Expect:0.0, Method:Compositional matrix adjust., Identities:332/526(63%), Positives:406/526(77%), Gaps:7/526(1%) Query 4 VTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNL-NLPANVPYSRVISRMGFKL 62 VTGLFKDCS+ +GL P APT++SVD K+KT + LCV++ +P ++ Y R+IS MGFK+ Sbjct 5900 VTGLFKDCSKIITGLHPTQAPTHLSVDTKFKT-EGLCVDIPGIPKDMTYRRLISMMGFKM 5958 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 + V GYP +FITREEA+R VR+WIGFDVEG HA+R+A GTN+PLQLGFSTGVN V P Sbjct 5959 NYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPT 6018 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G VDTE T + A+PPPG+QFKHL+PLM+KG W +VR +IVQMLSDTL LSD Sbjct 6019 GYVDTENSTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVV 6078 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV WAHGFELTS YF KIG E+ CC+C++RA +S+ +YACW HS G+DYVYNPF + Sbjct 6079 FVLWAHGFELTSMKYFVKIGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMI 6138 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 DVQQWG+ GNL +NHD++C VH AHVAS DAIMTRCLA+H CF++RVDW +EYP I E Sbjct 6139 DVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE 6198 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTR---K 359 K+N+ CR V+ VV++ALLA F ++DIGNPK I V VDW ++DAQP + K Sbjct 6199 LKINAACRKVQHMVVKSALLADKFTVLHDIGNPKAIRCVPQAEVDWKFYDAQPCSDKAYK 6258 Query 360 VQQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVN 418 +++LFY+ +F DG+CLFWNCNV +YP NAIVCRFDTRV S NLPGCDGGSLYVN Sbjct 6259 IEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVN 6318 Query 419 KHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGG 478 KHAFHTPA+D SAF LK LPFFYYS +PCE HG ++ DIDYVPLKSA CIT CNLGG Sbjct 6319 KHAFHTPAFDKSAFTHLKQLPFFYYSDSPCESHGK-QVVSDIDYVPLKSATCITRCNLGG 6377 Query 479 AVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 AVCR HA EYR+Y++AYN++ ++GF LW YK FD YNLW+TFTK+Q Sbjct 6378 AVCRHHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTKLQ 6423 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 5904 to 6427 Score:706 bits(1821), Expect:0.0, Method:Compositional matrix adjust., Identities:331/526(63%), Positives:407/526(77%), Gaps:7/526(1%) Query 4 VTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNL-NLPANVPYSRVISRMGFKL 62 VTGLFKDCS+ +GL P APT++SVD K+KT + LCV++ +P ++ Y R+IS MGFK+ Sbjct 5904 VTGLFKDCSKIITGLHPTQAPTHLSVDTKFKT-EGLCVDIPGIPKDMTYRRLISMMGFKM 5962 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 + V GYP +FITREEA+R VR+WIGFDVEG HA+R+A GTN+PLQLGFSTGVN V P Sbjct 5963 NYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAIPT 6022 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G VDTE T + A+PPPG+QFKHL+PLM+KG W +VR +IVQMLSDTL LSD Sbjct 6023 GYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVV 6082 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV WAHGFELTS YF KIG E+ CC+C++RA +S+ +YACW HS G+DYVYNPF + Sbjct 6083 FVLWAHGFELTSMKYFVKIGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMI 6142 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 DVQQWG+ GNL +NHD++C VH AHVAS DAIMTRCLA+H CF++RVDW +EYP I E Sbjct 6143 DVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE 6202 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTR---K 359 K+NS CR V+ VV++ALLA F ++DIGNPK I V V+W ++DAQP + K Sbjct 6203 LKINSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYK 6262 Query 360 VQQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVN 418 +++LFY+ +F DG+CLFWNCNV +YP NAIVCRFDTRV S NLPGCDGGSLYVN Sbjct 6263 IEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVN 6322 Query 419 KHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGG 478 KHAFHTPA+D SAF +LK LPFFYYS +PCE HG ++ DIDYVPLKSA CIT CNLGG Sbjct 6323 KHAFHTPAFDKSAFTNLKQLPFFYYSDSPCESHGK-QVVSDIDYVPLKSATCITRCNLGG 6381 Query 479 AVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 AVCR HA EYR+Y++AYN++ ++GF LW YK FD YNLW+TFT++Q Sbjct 6382 AVCRHHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQ 6427 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 5906 to 6429 Score:704 bits(1816), Expect:0.0, Method:Compositional matrix adjust., Identities:330/526(63%), Positives:407/526(77%), Gaps:7/526(1%) Query 4 VTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNL-NLPANVPYSRVISRMGFKL 62 VTGLFKDCS+ +GL P APT++SVD K+KT + LCV++ +P ++ Y R+IS MGFK+ Sbjct 5906 VTGLFKDCSKIITGLHPTQAPTHLSVDIKFKT-EGLCVDIPGIPKDMTYRRLISMMGFKM 5964 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 + V GYP +FITREEA+R VR+WIGFDVEG HA+R+A GTN+PLQLGFSTGVN V P Sbjct 5965 NYQVNGYPNMFITREEAIRHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPT 6024 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G VDTE T + A+PPPG+QFKHL+PLM+KG W +VR +IVQMLSDTL LSD Sbjct 6025 GYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWNVVRIKIVQMLSDTLKGLSDRVV 6084 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV WAHGFELTS YF KIG E+ CC+C++RA +S+ +YACW HS G+DYVYNPF + Sbjct 6085 FVLWAHGFELTSMKYFVKIGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPFMI 6144 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 DVQQWG+ GNL +NHD++C VH AHVAS DAIMTRCLA+H CF++RVDW +EYP I E Sbjct 6145 DVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDE 6204 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTR---K 359 ++NS CR V+ VV++ALLA F ++DIGNPK I V V+W ++DAQP + K Sbjct 6205 LRVNSACRKVQHMVVKSALLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYK 6264 Query 360 VQQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVN 418 +++LFY+ +F DG+CLFWNCNV +YP NAIVCRFDTRV S NLPGCDGGSLYVN Sbjct 6265 IEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCRFDTRVLSNLNLPGCDGGSLYVN 6324 Query 419 KHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGG 478 KHAFHTPA+D SAF +LK LPFFYYS +PCE HG ++ DIDYVPLKSA CIT CNLGG Sbjct 6325 KHAFHTPAFDKSAFTNLKQLPFFYYSDSPCESHGK-QVVSDIDYVPLKSATCITRCNLGG 6383 Query 479 AVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 AVCR HA EYR+Y++AYN++ ++GF LW YK FD YNLW+TFT++Q Sbjct 6384 AVCRHHANEYRQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTRLQ 6429 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 5767 to 6296 Score:656 bits(1693), Expect:0.0, Method:Compositional matrix adjust., Identities:314/531(59%), Positives:399/531(75%), Gaps:8/531(1%) Query 1 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPA-NVPYSRVISRMG 59 S++ GLFKDC++ L PAYAPT+VSV+DK+K ++ LCV+ + +PY+R+IS+MG Sbjct 5767 SEVTVGLFKDCAK-AEPLGPAYAPTFVSVNDKFKLNESLCVHFDTTELQMPYNRLISKMG 5825 Query 60 FKLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvv 119 FK D +PGY KLFITRE+A+R+VR W+GFDVEGAHA GTN+PLQ+GFSTGVNFVV Sbjct 5826 FKFDLNIPGYSKLFITREQAIREVRGWVGFDVEGAHACGPNIGTNLPLQIGFSTGVNFVV 5885 Query 120 qpvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSD 179 P G +DTE G+ L + ++ PPG+QFKHL+PLM KG W +VR+RIV+ML DTLD +SD Sbjct 5886 TPSGYIDTESGSRLANVVSKAPPGDQFKHLIPLMRKGEPWSVVRKRIVEMLCDTLDGVSD 5945 Query 180 YCTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHS---CGYDYV 236 TFV WAHGFELT+ YF K+G E+KC MC RRA +SS +Y+CW+H G D+V Sbjct 5946 TVTFVTWAHGFELTTLHYFAKVGPERKCFMCPRRATLFSSVYGAYSCWSHHRHIGGADFV 6005 Query 237 YNPFFVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEY 296 YNPF VDVQQWGYVGNL NHD C VH+GAHVAS DAIMTRCLAIH CF V+WD+EY Sbjct 6006 YNPFLVDVQQWGYVGNLQVNHDNVCDVHKGAHVASCDAIMTRCLAIHDCFCGEVNWDVEY 6065 Query 297 PYISHEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPL 356 P I++E +N CR V+R V++AA+ A + +YDIGNPK I + V +W+++D P+ Sbjct 6066 PIIANELAINRACRSVQRVVLKAAVKALHIETIYDIGNPKAIKVYGVNVNNWNFYDTNPV 6125 Query 357 TRKVQQLFYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSL 415 V+QL Y D+ +F DGL +FWNCNV YP+NA+VCRFDTRV S+ NL GC+GGSL Sbjct 6126 VEGVKQLHYVYDVHRDQFKDGLAMFWNCNVDCYPHNALVCRFDTRVLSKLNLAGCNGGSL 6185 Query 416 YVNKHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSM--IEDIDYVPLKSAVCITA 473 YVN+HAFHT A++ +AF +LKPLPFFYYS T CE S + ++DYVPLKS VCIT Sbjct 6186 YVNQHAFHTDAFNKNAFVNLKPLPFFYYSDTACENATGVSTNYVSEVDYVPLKSNVCITR 6245 Query 474 CNLGGAVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 CNLGGAVC+KHA EYR ++E+YN + ++GF LW KTFD++NLWSTF K+Q Sbjct 6246 CNLGGAVCKKHADEYRNFLESYNTMVSAGFTLWVDKTFDVFNLWSTFVKLQ 6296 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 5930 to 6451 Score:642 bits(1656), Expect:0.0, Method:Compositional matrix adjust., Identities:306/525(58%), Positives:386/525(73%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLP-ANVPYSRVISRMGF 60 Q T LFKDCSR +G PA+AP++++VDDKYK +L V LN+ + V YSR+IS MGF Sbjct 5930 QCTTNLFKDCSRSYAGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGF 5989 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFITR+EA+R+VR+W+GFD EGAHA+R++ GTN PLQLGFSTG++FVV+ Sbjct 5990 KLDLTLDGYCKLFITRDEAIRRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVE 6049 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G + AR PPGEQFKHLVPLM +G W +VR RIVQMLSD L L+D Sbjct 6050 ATGMFAERDGYVFKKAVARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADS 6109 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+GKE C +CN+RA ++S Y CW HS DY+YNP Sbjct 6110 VVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPL 6169 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY G+L +NHD CSVH+GAHVAS+DAIMTRCLA+H CF + V+W +EYP IS Sbjct 6170 IVDIQQWGYTGSLTSNHDLICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWSLEYPIIS 6229 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R + RAA+L +D YDIGNPKG+ V D+ ++DA P+ + V Sbjct 6230 NEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKG--YDFKFYDASPVVKSV 6287 Query 361 QQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 +Q Y E +F DGLC+FWNCNV KYP NA+VCRFDTRV ++ NLPGC+GGSLYVNK Sbjct 6288 KQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNK 6347 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF +LKP+PFFYYS TPC V+ G + +DYVPL+SA CIT CNLGGA Sbjct 6348 HAFHTSPFTRAAFENLKPMPFFYYSDTPC-VYMEGMESKQVDYVPLRSATCITRCNLGGA 6406 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA +YREY+E+YN + +GF W YKTFD YNLW+TFT++Q Sbjct 6407 VCLKHAEDYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ 6451 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 5900 to 6421 Score:641 bits(1654), Expect:0.0, Method:Compositional matrix adjust., Identities:304/525(58%), Positives:387/525(73%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNL-PANVPYSRVISRMGF 60 Q T LFKDCS+ SG PA+AP++++VDDKYK + +L V L + + V YSR+IS MGF Sbjct 5900 QCSTNLFKDCSKSYSGYHPAHAPSFLAVDDKYKATGDLAVCLGIGDSAVTYSRLISLMGF 5959 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFIT+EEAV++VR+W+GFD EGAHA+R++ GTN PLQLGFSTG++FVV+ Sbjct 5960 KLDVTLDGYCKLFITKEEAVKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVE 6019 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G A+ PPGEQFKHL+PLM +G W +VR RIVQM +D L LSD Sbjct 6020 ATGLFADRDGYSFKKAVAKAPPGEQFKHLIPLMTRGQRWDVVRPRIVQMFADHLIDLSDC 6079 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+G+E C +C +RA AY+S Y CW HS DY+YNP Sbjct 6080 VVLVTWAANFELTCLRYFAKVGREISCNVCTKRATAYNSRTGYYGCWRHSVTCDYLYNPL 6139 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY+G+L++NHD YCSVH+GAHVAS+DAIMTRCLA++ CF ++W++EYP IS Sbjct 6140 IVDIQQWGYIGSLSSNHDLYCSVHKGAHVASSDAIMTRCLAVYDCFCNNINWNVEYPIIS 6199 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R +++AA+L + YDIGNPK I V D D+ ++DAQP+ + V Sbjct 6200 NELSINTSCRVLQRVMLKAAMLCNRYTLCYDIGNPKAIACVKD--FDFKFYDAQPIVKSV 6257 Query 361 QQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 + L Y+ E F DGLC+FWNCNV KYP NA+VCRFDTRV + NLPGC+GGSLYVNK Sbjct 6258 KTLLYSFEAHKDSFKDGLCMFWNCNVDKYPPNAVVCRFDTRVLNNLNLPGCNGGSLYVNK 6317 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF LKP+PFFYYS TPC V+ +G + +DYVPLKSA CIT CNLGGA Sbjct 6318 HAFHTKPFSRAAFEHLKPMPFFYYSDTPC-VYMDGMDAKQVDYVPLKSATCITRCNLGGA 6376 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+E+YN + +GF W YKTFD YNLW+TFTK+Q Sbjct 6377 VCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTKLQ 6421 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 5900 to 6421 Score:641 bits(1654), Expect:0.0, Method:Compositional matrix adjust., Identities:304/525(58%), Positives:387/525(73%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNL-PANVPYSRVISRMGF 60 Q T LFKDCS+ SG PA+AP++++VDDKYK + +L V L + + V YSR+IS MGF Sbjct 5900 QCSTNLFKDCSKSYSGYHPAHAPSFLAVDDKYKATGDLAVCLGIGDSAVTYSRLISLMGF 5959 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFIT+EEAV++VR+W+GFD EGAHA+R++ GTN PLQLGFSTG++FVV+ Sbjct 5960 KLDVTLDGYCKLFITKEEAVKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVE 6019 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G A+ PPGEQFKHL+PLM +G W +VR RIVQM +D L LSD Sbjct 6020 ATGLFADRDGYSFKKAVAKAPPGEQFKHLIPLMTRGQRWDVVRPRIVQMFADHLIDLSDC 6079 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+G+E C +C +RA AY+S Y CW HS DY+YNP Sbjct 6080 VVLVTWAANFELTCLRYFAKVGREISCNVCTKRATAYNSRTGYYGCWRHSVTCDYLYNPL 6139 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY+G+L++NHD YCSVH+GAHVAS+DAIMTRCLA++ CF ++W++EYP IS Sbjct 6140 IVDIQQWGYIGSLSSNHDLYCSVHKGAHVASSDAIMTRCLAVYDCFCNNINWNVEYPIIS 6199 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R +++AA+L + YDIGNPK I V D D+ ++DAQP+ + V Sbjct 6200 NELSINTSCRVLQRVMLKAAMLCNRYTLCYDIGNPKAIACVKD--FDFKFYDAQPIVKSV 6257 Query 361 QQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 + L Y+ E F DGLC+FWNCNV KYP NA+VCRFDTRV + NLPGC+GGSLYVNK Sbjct 6258 KTLLYSFEAHKDSFKDGLCMFWNCNVDKYPPNAVVCRFDTRVLNNLNLPGCNGGSLYVNK 6317 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF LKP+PFFYYS TPC V+ +G + +DYVPLKSA CIT CNLGGA Sbjct 6318 HAFHTKPFSRAAFEHLKPMPFFYYSDTPC-VYMDGMDAKQVDYVPLKSATCITRCNLGGA 6376 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+E+YN + +GF W YKTFD YNLW+TFTK+Q Sbjct 6377 VCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTKLQ 6421 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 5900 to 6421 Score:639 bits(1648), Expect:0.0, Method:Compositional matrix adjust., Identities:303/525(58%), Positives:386/525(73%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNL-PANVPYSRVISRMGF 60 Q T LFKDCS+ SG PA+AP++++VDDKYK + +L V L + + V YSR+IS MGF Sbjct 5900 QCSTNLFKDCSKSYSGYHPAHAPSFLAVDDKYKATGDLAVCLGIGDSAVTYSRLISLMGF 5959 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFIT+EEAV++VR+W+GFD EGAHA+ ++ GTN PLQLGFSTG++FVV+ Sbjct 5960 KLDVTLDGYCKLFITKEEAVKRVRAWVGFDAEGAHATLDSIGTNFPLQLGFSTGIDFVVE 6019 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G A+ PPGEQFKHL+PLM +G W +VR RIVQM +D L LSD Sbjct 6020 ATGLFADRDGYSFKKAVAKAPPGEQFKHLIPLMTRGHRWDVVRPRIVQMFADHLIDLSDC 6079 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+G+E C +C +RA Y+S Y CW HS DY+YNP Sbjct 6080 VVLVTWAANFELTCLRYFAKVGREISCNVCTKRATVYNSRTGYYGCWRHSVTCDYLYNPL 6139 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY+G+L++NHD YCSVH+GAHVAS+DAIMTRCLA++ CF ++W++EYP IS Sbjct 6140 IVDIQQWGYIGSLSSNHDLYCSVHKGAHVASSDAIMTRCLAVYDCFCNNINWNVEYPIIS 6199 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R +++AA+L + YDIGNPKGI V D D+ ++DAQP+ + V Sbjct 6200 NELSINTSCRVLQRVILKAAMLCNRYTLCYDIGNPKGIACVKD--FDFKFYDAQPIVKSV 6257 Query 361 QQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 + L Y+ E F DGLC+FWNCNV KYP NA+VCRFDTRV + NLPGC+GGSLYVNK Sbjct 6258 KTLLYSFEAHKDSFKDGLCMFWNCNVDKYPPNAVVCRFDTRVLNNLNLPGCNGGSLYVNK 6317 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF LKP+PFFYYS TPC V+ +G + +DYVPLKSA CIT CNLGGA Sbjct 6318 HAFHTKPFARAAFEHLKPMPFFYYSDTPC-VYMDGMDAKQVDYVPLKSATCITRCNLGGA 6376 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+E+YN + +GF W YKTFD YNLW+TFTK+Q Sbjct 6377 VCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTKLQ 6421 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 5982 to 6503 Score:638 bits(1645), Expect:0.0, Method:Compositional matrix adjust., Identities:304/525(58%), Positives:385/525(73%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLP-ANVPYSRVISRMGF 60 Q T LFKDCSR G PA+AP++++VDDKYK +L V LN+ + V YSR+IS MGF Sbjct 5982 QCTTNLFKDCSRSYVGYHPAHAPSFLAVDDKYKVGGDLAVCLNVADSAVTYSRLISLMGF 6041 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFITR+EA+++VR+W+GFD EGAHA R++ GTN PLQLGFSTG++FVV+ Sbjct 6042 KLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHAIRDSIGTNFPLQLGFSTGIDFVVE 6101 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G + AAR PPGEQFKHL+PLM +G W +VR RIVQMLSD L L+D Sbjct 6102 ATGMFAERDGYVFKKAAARAPPGEQFKHLIPLMSRGQKWDVVRIRIVQMLSDHLVDLADS 6161 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+G+E C +C +RA ++S Y CW HS DY+YNP Sbjct 6162 VVLVTWAASFELTCLRYFAKVGREVVCSVCTKRATCFNSRTGYYGCWRHSYSCDYLYNPL 6221 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY G+L +NHD CSVH+GAHVAS+DAIMTRCLA+H CF + V+W++EYP IS Sbjct 6222 IVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIIS 6281 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R + RAA+L +D YDIGNPKG+ V D+ ++DA P+ + V Sbjct 6282 NEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKG--YDFKFYDASPVVKSV 6339 Query 361 QQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 +Q Y E +F DGLC+FWNCNV KYP NA+VCRFDTRV ++ NLPGC+GGSLYVNK Sbjct 6340 KQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLNKLNLPGCNGGSLYVNK 6399 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF +LKP+PFFYYS TPC V+ G + +DYVPL+SA CIT CNLGGA Sbjct 6400 HAFHTSPFTRAAFENLKPMPFFYYSDTPC-VYMEGMESKQVDYVPLRSATCITRCNLGGA 6458 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+E+YN + +GF W YKTFD YNLW+TFT++Q Sbjct 6459 VCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ 6503 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 5900 to 6421 Score:636 bits(1641), Expect:0.0, Method:Compositional matrix adjust., Identities:303/525(58%), Positives:385/525(73%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNL-PANVPYSRVISRMGF 60 Q T LFKDCS+ SG PA+AP++++VDDKYK + +L V L + + V YSR+IS MGF Sbjct 5900 QCSTNLFKDCSKSYSGYHPAHAPSFLAVDDKYKATGDLAVCLGIGDSAVTYSRLISLMGF 5959 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFIT+EEAV++VR+W+GFD EGAHA+R++ GTN PLQLGFSTG++FVV+ Sbjct 5960 KLDVTLDGYCKLFITKEEAVKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVE 6019 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G A+ PPGEQFKHL+PLM +G W +VR RIVQM +D L LSD Sbjct 6020 ATGLFADRDGYSFKKAVAKAPPGEQFKHLIPLMTRGQRWDVVRPRIVQMFADHLIDLSDC 6079 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+G+E C + +RA AY+S Y CW HS DY+YNP Sbjct 6080 VVLVTWAANFELTCLRYFAKVGREISCNVSTKRATAYNSRTGYYGCWRHSVTCDYLYNPL 6139 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY+G+L++NHD YCSVH+GAHVAS+DAIMTRCLA++ CF ++W++EYP IS Sbjct 6140 IVDIQQWGYIGSLSSNHDLYCSVHKGAHVASSDAIMTRCLAVYDCFCNNINWNVEYPIIS 6199 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R +++AA+L + YDIGNPK I V D D+ ++DAQP+ + V Sbjct 6200 NELSINTSCRVLQRVMLKAAMLCNRYTLCYDIGNPKAIACVKD--FDFKFYDAQPIVKSV 6257 Query 361 QQLFY-TEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 + L Y E F DGLC+FWNCNV KYP NA+VCRFDTRV + NLPGC+GGSLYVNK Sbjct 6258 KTLLYFFEAHKDSFKDGLCMFWNCNVDKYPPNAVVCRFDTRVLNNLNLPGCNGGSLYVNK 6317 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF LKP+PFFYYS TPC V+ +G + +DYVPLKSA CIT CNLGGA Sbjct 6318 HAFHTKPFSRAAFEHLKPMPFFYYSDTPC-VYMDGMDAKQVDYVPLKSATCITRCNLGGA 6376 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+E+YN + +GF W YKTFD YNLW+TFTK+Q Sbjct 6377 VCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTKLQ 6421 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 5900 to 6421 Score:632 bits(1630), Expect:0.0, Method:Compositional matrix adjust., Identities:301/525(57%), Positives:383/525(72%), Gaps:5/525(0%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNL-PANVPYSRVISRMGF 60 Q T LFKDCS+ SG PA+AP++++VDDKYK + +L V L + + V YSR+ S MGF Sbjct 5900 QCSTNLFKDCSKSYSGYHPAHAPSFLAVDDKYKATGDLAVCLGIGDSAVTYSRLTSLMGF 5959 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFIT+EEAV++VR+W+GFD EGAHA+R++ GTN PLQLGFSTG++FVV+ Sbjct 5960 KLDVTLDGYCKLFITKEEAVKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVE 6019 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G A+ PPGEQFKHL+PLM +G W +VR RIVQM +D L LSD Sbjct 6020 ATGLFADRDGYSFKKAVAKAPPGEQFKHLIPLMTRGQRWDVVRPRIVQMFADHLIDLSDC 6079 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+G+E C +C +RA AY+S Y CW HS DY+YNP Sbjct 6080 VVLVTWAANFELTCLRYFAKVGREISCNVCTKRATAYNSRTGYYGCWRHSVTCDYLYNPL 6139 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY+G+L++NHD YCSVH+GAHVAS+DAIMTRCLA++ CF ++W++EYP IS Sbjct 6140 IVDIQQWGYIGSLSSNHDLYCSVHKGAHVASSDAIMTRCLAVYDCFCNNINWNVEYPIIS 6199 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R +++AA+L + YDIGNPK I V D D+ ++DAQP+ + V Sbjct 6200 NELSINTSCRVLQRVMLKAAMLCNRYTLCYDIGNPKAIACVKD--FDFKFYDAQPIVKSV 6257 Query 361 QQLFY-TEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 + L Y E F DGLC+FWNCNV KYP NA+VCRFDTRV + NLPGC+GGSLYVNK Sbjct 6258 KTLLYFFEAHKDSFKDGLCMFWNCNVDKYPPNAVVCRFDTRVLNNLNLPGCNGGSLYVNK 6317 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF LKP+PFFYYS TPC V+ +G + +DYVPLKSA CIT CNL GA Sbjct 6318 HAFHTKPFSRAAFEHLKPMPFFYYSDTPC-VYMDGMDAKQVDYVPLKSATCITRCNLVGA 6376 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+ +YN + +GF W YKTFD YNLW+TFTK+Q Sbjct 6377 VCLKHAEEYREYLNSYNTATTAGFTFWVYKTFDFYNLWNTFTKLQ 6421 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 5988 to 6507 Score:629 bits(1623), Expect:0.0, Method:Compositional matrix adjust., Identities:305/525(58%), Positives:382/525(72%), Gaps:7/525(1%) Query 2 QIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLP-ANVPYSRVISRMGF 60 Q T LFKDCS+ G+ P ++VDDKYK S L V LN+ + V YSR+IS MGF Sbjct 5988 QCTTNLFKDCSKSYVGIPPC--AFLLAVDDKYKVSGNLAVCLNVADSAVTYSRLISLMGF 6045 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 KLD T+ GY KLFITR+EA+++VR+W+GFD EGAHA+R++ GTN PLQLGFSTG++FVV+ Sbjct 6046 KLDLTLDGYCKLFITRDEAIKRVRAWVGFDAEGAHATRDSIGTNFPLQLGFSTGIDFVVE 6105 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G+ G + AAR PPGEQFKHLVPLM +G W +VR RIVQMLSD L L+D Sbjct 6106 ATGMFAERDGYVFKKAAARAPPGEQFKHLVPLMSRGQKWDVVRIRIVQMLSDHLVDLADS 6165 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 V WA FELT YF K+GKE C +CN+RA ++S Y CW HS DY+YNP Sbjct 6166 VVLVTWAASFELTCLRYFAKVGKEVVCSVCNKRATCFNSRTGYYGCWRHSYSCDYLYNPL 6225 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 VD+QQWGY G+L +NHD CSVH+GAHVAS+DAIMTRCLA+H CF + V+W++EYP IS Sbjct 6226 IVDIQQWGYTGSLTSNHDPICSVHKGAHVASSDAIMTRCLAVHDCFCKSVNWNLEYPIIS 6285 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKV 360 +E +N+ CR+++R + RAA+L +D YDIGNPKG+ V D+ ++DA P+ + V Sbjct 6286 NEVSVNTSCRLLQRVMFRAAMLCNRYDVCYDIGNPKGLACVKG--YDFKFYDASPVVKSV 6343 Query 361 QQLFYT-EDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNK 419 +Q Y E +F DGLC+FWNCNV KYP NA+VCRFDTRV S+ NLPGC+GGSLYVNK Sbjct 6344 KQFVYKYEAHKDQFLDGLCMFWNCNVDKYPANAVVCRFDTRVLSKLNLPGCNGGSLYVNK 6403 Query 420 HAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGA 479 HAFHT + +AF +LKP+PFFYYS TPC V+ G + +DYVPL+SA CIT CNLGGA Sbjct 6404 HAFHTNPFTRAAFENLKPMPFFYYSDTPC-VYMEGMESKQVDYVPLRSATCITRCNLGGA 6462 Query 480 VCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 VC KHA EYREY+E+YN + +GF W YKTFD YNLW+TFT++Q Sbjct 6463 VCLKHAEEYREYLESYNTATTAGFTFWVYKTFDFYNLWNTFTRLQ 6507 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 5941 to 6459 Score:628 bits(1619), Expect:0.0, Method:Compositional matrix adjust., Identities:300/522(57%), Positives:385/522(73%), Gaps:5/522(0%) Query 5 TGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANV-PYSRVISRMGFKLD 63 T LFKDCS+ G PA+AP++++VDDKYK ++ L VNLN+ V YSR+IS MGFKLD Sbjct 5941 TNLFKDCSKSCLGYHPAHAPSFLAVDDKYKVNENLAVNLNICEPVLTYSRLISLMGFKLD 6000 Query 64 ATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvg 123 T+ GY KLFIT++EA+++VR W+GFDVEGAHA+R GTN PLQ+GFSTGV+FVV+ G Sbjct 6001 LTLDGYSKLFITKDEAIKRVRGWVGFDVEGAHATRENIGTNFPLQIGFSTGVDFVVEATG 6060 Query 124 vvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTF 183 + A+ PPGE+FKHL+PLM KG W IVR RIVQMLSD L LSD F Sbjct 6061 LFAERDCYTFKKTVAKAPPGEKFKHLIPLMSKGQKWDIVRIRIVQMLSDYLLDLSDSVVF 6120 Query 184 VCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVD 243 + W+ FELT YF K+G+E C +C+ RA Y+S Y CW HS DYVYNP VD Sbjct 6121 ITWSASFELTCLRYFAKLGRELNCNVCSNRATCYNSRTGYYGCWRHSYTCDYVYNPLIVD 6180 Query 244 VQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEK 303 +QQWGY G+L +NHD C+VH+GAHVAS DAIMTRCLAI+ CF + V+W++EYP IS+E Sbjct 6181 IQQWGYTGSLTSNHDIICNVHKGAHVASADAIMTRCLAIYDCFCKSVNWNLEYPIISNEV 6240 Query 304 KLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQL 363 +N+ CR+++R +++AA+L ++ YDIGNPKG+ V D ++ ++DA P+ + V+QL Sbjct 6241 SINTSCRLLQRVMLKAAMLCNRYNLCYDIGNPKGLACVKD--YEFKFYDAFPVAKSVKQL 6298 Query 364 FYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAF 422 FY D+ F DGLC+FWNCNV KYP+N+IVCRFDTRV ++ NLPGC+GGSLYVNKHAF Sbjct 6299 FYVYDVHKDNFKDGLCMFWNCNVDKYPSNSIVCRFDTRVLNKLNLPGCNGGSLYVNKHAF 6358 Query 423 HTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCR 482 HT + + F +LKP+PFFYYS TPC V+ +G + +DYVPL+SA CIT CNLGGAVC Sbjct 6359 HTNPFTRTVFENLKPMPFFYYSDTPC-VYVDGLESKQVDYVPLRSATCITRCNLGGAVCS 6417 Query 483 KHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 KHA EY Y+E+YN+V+ +GF W YKTFD YNLW+TFT +Q Sbjct 6418 KHAEEYCNYLESYNIVTTAGFTFWVYKTFDFYNLWNTFTTLQ 6459 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 5991 to 6509 Score:625 bits(1612), Expect:0.0, Method:Compositional matrix adjust., Identities:299/522(57%), Positives:384/522(73%), Gaps:5/522(0%) Query 5 TGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANV-PYSRVISRMGFKLD 63 T LFKDCS+ G PA+AP++++VDDKYK ++ L VNLN+ V YSR+IS MGFKLD Sbjct 5991 TNLFKDCSKSCLGYHPAHAPSFLAVDDKYKVNENLAVNLNICEPVLTYSRLISLMGFKLD 6050 Query 64 ATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvg 123 T+ GY KLFIT++EA+++VR W+GFDVEGAHA+R GTN PLQ+GFSTGV+FVV+ G Sbjct 6051 LTLDGYSKLFITKDEAIKRVRGWVGFDVEGAHATRENIGTNFPLQIGFSTGVDFVVEATG 6110 Query 124 vvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTF 183 + A+ PPGE+FKHL+PLM KG W IVR RIVQMLSD L LSD F Sbjct 6111 LFAERDCYTFKKTVAKAPPGEKFKHLIPLMSKGQKWDIVRIRIVQMLSDYLLDLSDSVVF 6170 Query 184 VCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVD 243 + W+ FELT YF K+G+E C +C+ RA Y+S Y CW HS DYVYNP VD Sbjct 6171 ITWSASFELTCLRYFAKLGRELNCNVCSNRATCYNSRTGYYGCWRHSYTCDYVYNPLIVD 6230 Query 244 VQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEK 303 +QQWGY G+L +NHD C+VH+GAHVAS DAIMTRCLAI+ CF + V+W++EYP IS+E Sbjct 6231 IQQWGYTGSLTSNHDIICNVHKGAHVASADAIMTRCLAIYDCFCKSVNWNLEYPIISNEV 6290 Query 304 KLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQL 363 +N+ CR+++R +++AA+L ++ YDIGNPKG+ V D ++ ++DA P+ + V+QL Sbjct 6291 SINTSCRLLQRVMLKAAMLCNRYNLCYDIGNPKGLACVKD--YEFKFYDAFPVAKSVKQL 6348 Query 364 FYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAF 422 FY D+ F DGLC+FWNCNV KYP+N+IVCRFDTRV ++ NLPGC+GGSLYVNKHAF Sbjct 6349 FYVYDVHKDNFKDGLCMFWNCNVDKYPSNSIVCRFDTRVLNKLNLPGCNGGSLYVNKHAF 6408 Query 423 HTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCR 482 HT + + F +LKP+PFFYYS TPC V+ +G + +DYVPL+SA CIT CNLGGAVC Sbjct 6409 HTNPFTRTVFENLKPMPFFYYSDTPC-VYVDGLESKQVDYVPLRSATCITRCNLGGAVCS 6467 Query 483 KHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 KHA EY Y+E+YN+V+ +GF W YK FD YNLW+TFT +Q Sbjct 6468 KHAEEYCNYLESYNIVTTAGFTFWVYKNFDFYNLWNTFTTLQ 6509 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 5961 to 6479 Score:620 bits(1600), Expect:0.0, Method:Compositional matrix adjust., Identities:296/522(57%), Positives:385/522(73%), Gaps:5/522(0%) Query 5 TGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANV-PYSRVISRMGFKLD 63 T LFKDCS+ G PA+AP+++SVDDKYK +++L V LN+ V YSR+IS MGFKLD Sbjct 5961 TNLFKDCSKNFLGYHPAHAPSFLSVDDKYKVNEDLAVCLNICEPVLTYSRLISLMGFKLD 6020 Query 64 ATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvg 123 T+ GY K FIT++EA+++VR W+GFDVEGAHA+R+ GTN PLQ+GFSTGV+FVV+ G Sbjct 6021 LTLDGYSKFFITKDEAIKRVRGWVGFDVEGAHATRDNIGTNFPLQIGFSTGVDFVVEATG 6080 Query 124 vvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTF 183 + + A+ PPG+ FKHL+PLM KG W +VR RIVQMLSD L LSD F Sbjct 6081 LFAERDCYIFKRTVAKAPPGDNFKHLIPLMSKGQKWDVVRIRIVQMLSDYLLDLSDSVVF 6140 Query 184 VCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVD 243 + W+ FELT YF K+G+E C +C RA Y+S Y CW HS DYVYNP VD Sbjct 6141 ITWSASFELTCLRYFAKLGRELNCDVCPNRATCYNSRTGYYGCWRHSYTCDYVYNPLIVD 6200 Query 244 VQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEK 303 +QQWGY G+L +NHD C+VH+GAHVAS+DAIMTRCLAI+ CF + V+W++EYP IS+E Sbjct 6201 IQQWGYTGSLTSNHDIICNVHKGAHVASSDAIMTRCLAIYDCFCKSVNWNLEYPIISNEV 6260 Query 304 KLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQL 363 +N+ CR+++R +++AA+L ++ YDIGNPKGI V D ++ ++DA P+ + V+QL Sbjct 6261 SINTSCRLLQRVMLKAAMLCNRYNLCYDIGNPKGIACVKD--YEFKFYDASPVVKSVKQL 6318 Query 364 FYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAF 422 FY D+ F DGLC+FWNCNV KYP+N+IVCRFDTRV ++ NLPGC+GGSLYVNKHAF Sbjct 6319 FYVYDVHKDNFKDGLCMFWNCNVDKYPSNSIVCRFDTRVLNKLNLPGCNGGSLYVNKHAF 6378 Query 423 HTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCR 482 HT + + F +LKP+PFFYYS TPC V+ +G + +DYVPL+SA CIT CNLGGAVC Sbjct 6379 HTNPFTRTVFENLKPMPFFYYSDTPC-VYVDGLESKQVDYVPLRSATCITRCNLGGAVCS 6437 Query 483 KHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 KHA +Y +Y+E+YN+ + +GF W YKTFD YNLW+TFT +Q Sbjct 6438 KHAEDYCKYLESYNVATTAGFTFWVYKTFDFYNLWNTFTMLQ 6479 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 5533 to 6039 Score:568 bits(1464), Expect:0.0, Method:Compositional matrix adjust., Identities:283/516(55%), Positives:354/516(68%), Gaps:9/516(1%) Query 6 GLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDAT 65 GLFKDCS+ + PAYA TY+S+ D +KTSD L VN+ +V Y+ VIS MGF+ +A Sbjct 5533 GLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIG-TKDVKYANVISYMGFRFEAN 5591 Query 66 VPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvgvv 125 +PGY LF TR+ A+R VR+W+GFDVEGAH + GTNVPLQLGFS GV+FVVQ G V Sbjct 5592 IPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCV 5651 Query 126 DTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVC 185 TE GN + + AR PPGEQF HL+PLM KG W IVRRRIVQM+ D D LSD FV Sbjct 5652 ITEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVL 5711 Query 186 WAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQ 245 WA G ELT+ YF KIG+ QK C C + A YSS YAC+ H+ G DY+YNP+ +D+Q Sbjct 5712 WAGGLELTTMRYFVKIGRPQK-CECGKSATCYSSSQSVYACFKHALGCDYLYNPYCIDIQ 5770 Query 246 QWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKL 305 QWGY G+L+ NH C++H+ HVAS DAIMTRCLAIH CF++RVDW I YP+I +E+K+ Sbjct 5771 QWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKI 5830 Query 306 NSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQLFY 365 N RIV+ +V++AAL + ++D+GNPKGI P + W +D P+ V+ L Y Sbjct 5831 NKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTP-IPWFCYDRDPINNNVRCLDY 5889 Query 366 TEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFHTP 425 + M +GL LFWNCNV YP +IVCRFDTR S+ +L GC+GG+LYVN HAFHTP Sbjct 5890 -DYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTP 5948 Query 426 AYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRKHA 485 AYD AF LKP+PFFYY + CE+ +YVPLKS VCIT CN+GGAVC+KHA Sbjct 5949 AYDRRAFAKLKPMPFFYYDDSNCELVDGQP-----NYVPLKSNVCITKCNIGGAVCKKHA 6003 Query 486 TEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFT 521 YR Y+E YN+ +GF +WC + FD Y LW F Sbjct 6004 ALYRAYVEDYNIFMQAGFTIWCPQNFDTYMLWHGFV 6039 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 5558 to 6063 Score:567 bits(1462), Expect:0.0, Method:Compositional matrix adjust., Identities:283/515(55%), Positives:354/515(68%), Gaps:9/515(1%) Query 6 GLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDAT 65 GLFKDCS+ + PAYA TY+S+ D +KTSD L VN+ +V Y+ VIS MGF+ +A Sbjct 5558 GLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIG-TKDVKYANVISYMGFRFEAN 5616 Query 66 VPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvgvv 125 +PGY LF TR+ A+R VR+W+GFDVEGAH + GTNVPLQLGFS GV+FVVQ G V Sbjct 5617 IPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCV 5676 Query 126 DTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVC 185 TE GN + + AR PPGEQF HL+PLM KG W IVRRRIVQM+ D D LSD FV Sbjct 5677 VTEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVL 5736 Query 186 WAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQ 245 WA G ELT+ YF KIG+ QK C C + A YSS YAC+ H+ G DY+YNP+ +D+Q Sbjct 5737 WAGGLELTTMRYFVKIGRPQK-CECGKSATCYSSSQCVYACFKHALGCDYLYNPYCIDIQ 5795 Query 246 QWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKL 305 QWGY G+L+ NH C++H+ HVAS DAIMTRCLAIH CF++RVDW I YP+I +E+K+ Sbjct 5796 QWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKI 5855 Query 306 NSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQLFY 365 N RIV+ +V++AAL + ++D+GNPKGI P + W +D P+ V+ L Y Sbjct 5856 NKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTP-IPWFCYDRDPINNNVRCLEY 5914 Query 366 TEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFHTP 425 + M +GL LFWNCNV YP +IVCRFDTR S+ +L GC+GG+LYVN HAFHTP Sbjct 5915 -DYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTP 5973 Query 426 AYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRKHA 485 AYD AF LKP+PFFYY + CE+ +YVPLKS VCIT CN+GGAVC+KHA Sbjct 5974 AYDRRAFAKLKPMPFFYYDDSNCELVDGQP-----NYVPLKSNVCITKCNIGGAVCKKHA 6028 Query 486 TEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTF 520 YR Y+E YN+ +GF +WC + FD Y LW F Sbjct 6029 ALYRAYVEDYNMFMQAGFTIWCPQNFDTYMLWHGF 6063 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 5470 to 5989 Score:546 bits(1406), Expect:2e-173, Method:Compositional matrix adjust., Identities:266/523(51%), Positives:353/523(67%), Gaps:6/523(1%) Query 5 TGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELC--VNLNLPANVPYSRVISRMGFKL 62 TGLFK C++E SG+ PAYA T ++ YK +DEL VN+ + + Y +IS +GFK+ Sbjct 5470 TGLFKICNKEFSGVHPAYAVTTKALAATYKVNDELAALVNVEAGSEITYKHLISLLGFKM 5529 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 V G +FITR+EA+R VR W+GFDVE HA GTN+P Q+GFSTG +FVV P Sbjct 5530 SVNVEGCHNMFITRDEAIRNVRGWVGFDVEATHACGTNIGTNLPFQVGFSTGADFVVTPE 5589 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G+VDT GN + ++ PPGEQF HL L W ++R RIVQML+D L +SD Sbjct 5590 GLVDTSIGNNFEPVNSKAPPGEQFNHLRVLFKSAKPWHVIRPRIVQMLADNLCNVSDCVV 5649 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV W HG ELT+ YF KIGKEQ C C RA ++S Q+YACW H G+D+VYNP V Sbjct 5650 FVTWCHGLELTTLRYFVKIGKEQ-VCSCGSRATTFNSHTQAYACWKHCLGFDFVYNPLLV 5708 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 D+QQWGY GNL NHD +C+VH AHVAS DAIMTRCLAI++ F + V+WD+ YP+I++E Sbjct 5709 DIQQWGYSGNLQFNHDLHCNVHGHAHVASVDAIMTRCLAINNAFCQDVNWDLTYPHIANE 5768 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQ 362 ++NS CR ++R + A + A + VYDIGNPKGI V V++ ++D P+ R V+Q Sbjct 5769 DEVNSSCRYLQRMYLNACVDALKVNVVYDIGNPKGIKCVRRGDVNFRFYDKNPIVRNVKQ 5828 Query 363 LFYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHA 421 Y + +FADGLC+FWNCNV YP+N++VCR+DTR S FNLPGC+GGSLYVNKHA Sbjct 5829 FEYDYNQHKDKFADGLCMFWNCNVDCYPDNSLVCRYDTRNLSVFNLPGCNGGSLYVNKHA 5888 Query 422 FHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVC 481 F+TP +D +FR+LK +PFF+Y ++PCE + +D+ V L + CIT CN+GGAVC Sbjct 5889 FYTPKFDRISFRNLKAMPFFFYDSSPCETIQVDGVAQDL--VSLATKDCITKCNIGGAVC 5946 Query 482 RKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 +KHA Y E++ +YN +GF W + YNLW +F+ +Q Sbjct 5947 KKHAQMYAEFVTSYNAAVTAGFTFWVTNKLNPYNLWKSFSALQ 5989 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 5470 to 5989 Score:546 bits(1406), Expect:2e-173, Method:Compositional matrix adjust., Identities:266/523(51%), Positives:353/523(67%), Gaps:6/523(1%) Query 5 TGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELC--VNLNLPANVPYSRVISRMGFKL 62 TGLFK C++E SG+ PAYA T ++ YK +DEL VN+ + + Y +IS +GFK+ Sbjct 5470 TGLFKICNKEFSGVHPAYAVTTKALAATYKVNDELAALVNVEAGSEITYKHLISLLGFKM 5529 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 V G +FITR+EA+R VR W+GFDVE HA GTN+P Q+GFSTG +FVV P Sbjct 5530 SVNVEGCHNMFITRDEAIRNVRGWVGFDVEATHACGTNIGTNLPFQVGFSTGADFVVTPE 5589 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G+VDT GN + ++ PPGEQF HL L W ++R RIVQML+D L +SD Sbjct 5590 GLVDTSIGNNFEPVNSKAPPGEQFNHLRVLFKSAKPWHVIRPRIVQMLADNLCNVSDCVV 5649 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV W HG ELT+ YF KIGKEQ C C RA ++S Q+YACW H G+D+VYNP V Sbjct 5650 FVTWCHGLELTTLRYFVKIGKEQ-VCSCGSRATTFNSHTQAYACWKHCLGFDFVYNPLLV 5708 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 D+QQWGY GNL NHD +C+VH AHVAS DAIMTRCLAI++ F + V+WD+ YP+I++E Sbjct 5709 DIQQWGYSGNLQFNHDLHCNVHGHAHVASVDAIMTRCLAINNAFCQDVNWDLTYPHIANE 5768 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQ 362 ++NS CR ++R + A + A + VYDIGNPKGI V V++ ++D P+ R V+Q Sbjct 5769 DEVNSSCRYLQRMYLNACVDALKVNVVYDIGNPKGIKCVRRGDVNFRFYDKNPIVRNVKQ 5828 Query 363 LFYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHA 421 Y + +FADGLC+FWNCNV YP+N++VCR+DTR S FNLPGC+GGSLYVNKHA Sbjct 5829 FEYDYNQHKDKFADGLCMFWNCNVDCYPDNSLVCRYDTRNLSVFNLPGCNGGSLYVNKHA 5888 Query 422 FHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVC 481 F+TP +D +FR+LK +PFF+Y ++PCE + +D+ V L + CIT CN+GGAVC Sbjct 5889 FYTPKFDRISFRNLKAMPFFFYDSSPCETIQVDGVAQDL--VSLATKDCITKCNIGGAVC 5946 Query 482 RKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 +KHA Y E++ +YN +GF W + YNLW +F+ +Q Sbjct 5947 KKHAQMYAEFVTSYNAAVTAGFTFWVTNKLNPYNLWKSFSALQ 5989 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p39; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 5472 to 5991 Score:545 bits(1403), Expect:5e-173, Method:Compositional matrix adjust., Identities:265/523(51%), Positives:354/523(67%), Gaps:6/523(1%) Query 5 TGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELC--VNLNLPANVPYSRVISRMGFKL 62 TGLFK C++E SG+ PAYA T ++ YK +DEL VN+ + + Y +IS +GFK+ Sbjct 5472 TGLFKICNKEFSGVHPAYAVTTKALAATYKVNDELAALVNVEAGSEITYKHLISLLGFKM 5531 Query 63 DATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpv 122 V G +FITR+EA+R VR W+GFDVE HA GTN+P Q+GFSTG +FVV P Sbjct 5532 SVNVEGCHNMFITRDEAIRNVRGWVGFDVEATHACGTNIGTNLPFQVGFSTGADFVVTPE 5591 Query 123 gvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCT 182 G+VDT GN + ++ PPGEQF HL L W +VR RIVQML+D L +SD Sbjct 5592 GLVDTSIGNNFEPVNSKAPPGEQFNHLRALFKSAKPWHVVRPRIVQMLADNLCNVSDCVV 5651 Query 183 FVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFV 242 FV W HG ELT+ YF KIGK+Q C C RA ++S Q+YACW H G+D+VYNP V Sbjct 5652 FVTWCHGLELTTLRYFVKIGKDQ-VCSCGSRATTFNSHTQAYACWKHCLGFDFVYNPLLV 5710 Query 243 DVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHE 302 D+QQWGY GNL NHD +C+VH AHVAS DAIMTRCLAI++ F + V+WD+ YP+I++E Sbjct 5711 DIQQWGYSGNLQFNHDLHCNVHGHAHVASADAIMTRCLAINNAFCQDVNWDLTYPHIANE 5770 Query 303 KKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIPIVDDPVVDWHYFDAQPLTRKVQQ 362 ++NS CR ++R + A + A + VYDIGNPKGI V +++ ++D P+ V+Q Sbjct 5771 DEVNSSCRYLQRMYLNACVDALKVNVVYDIGNPKGIKCVRRGDLNFRFYDKNPIVPNVKQ 5830 Query 363 LFYTEDM-ASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHA 421 Y + +FADGLC+FWNCNV YP+N++VCR+DTR S FNLPGC+GGSLYVNKHA Sbjct 5831 FEYDYNQHKDKFADGLCMFWNCNVDCYPDNSLVCRYDTRNLSVFNLPGCNGGSLYVNKHA 5890 Query 422 FHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVC 481 FHTP +D ++FR+LK +PFF+Y ++PCE + +D+ V L + CIT CN+GGAVC Sbjct 5891 FHTPKFDRTSFRNLKAMPFFFYDSSPCETIQLDGVAQDL--VSLATKDCITKCNIGGAVC 5948 Query 482 RKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 +KHA Y +++ +YN +GF W F+ YNLW +F+ +Q Sbjct 5949 KKHAQMYADFVTSYNAAVTAGFTFWVTNNFNPYNLWKSFSALQ 5991 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 5568 to 6081 Score:541 bits(1394), Expect:8e-172, Method:Compositional matrix adjust., Identities:268/524(51%), Positives:352/524(67%), Gaps:12/524(2%) Query 1 SQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGF 60 S V GLFK+C+R L P +A T++S+ D++KT+ +L V + Y VIS MGF Sbjct 5568 SSQVCGLFKNCTRTPLNLPPTHAHTFLSLSDQFKTTGDLAVQIGSNNVCTYEHVISFMGF 5627 Query 61 KLDATVPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvq 120 + D ++PG LF TR+ A+R VR W+G DVE AH + GTNVPLQ+GFS GVNFVVQ Sbjct 5628 RFDISIPGSHSLFCTRDFAIRNVRGWLGMDVESAHVCGDNIGTNVPLQVGFSNGVNFVVQ 5687 Query 121 pvgvvDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDY 180 G V T +G+++ + A+ PPGEQF+HL+PL+ KG W IVRRRIVQM+SD L LSD Sbjct 5688 TEGCVSTNFGDVIKPVCAKSPPGEQFRHLIPLLRKGQPWLIVRRRIVQMISDYLSNLSDI 5747 Query 181 CTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPF 240 FV WA ELT+ YF KIG K C C A Y+S Y C+ H+ G DYVYNP+ Sbjct 5748 LVFVLWAGSLELTTMRYFVKIG-PIKYCYCGNSATCYNSVSNEYCCFKHALGCDYVYNPY 5806 Query 241 FVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYIS 300 D+QQWGYVG+L+ NH +C++H+ H AS DA+MTRCLA+H CF++ VDW + YP+I+ Sbjct 5807 AFDIQQWGYVGSLSQNHHTFCNIHRNEHDASGDAVMTRCLAVHDCFVKNVDWTVTYPFIA 5866 Query 301 HEKKLNSCCRIVERNVVRAALLAGSFDKVYDIGNPKGI--PIVDDPVVDWHYFDAQPLTR 358 +EK +N C R V+ +VVRAAL ++DIGNPKG+ + D W+ +D QP+ Sbjct 5867 NEKFINGCGRNVQGHVVRAALKLYKPSVIHDIGNPKGVRCAVTD---AKWYCYDKQPVNS 5923 Query 359 KVQQLFYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVN 418 V+ L Y + DGLCLFWNCNV YP +IVCRFDTR S FNL G +GGSLYVN Sbjct 5924 NVKLLDYDYATHGQL-DGLCLFWNCNVDMYPEFSIVCRFDTRTRSVFNLEGVNGGSLYVN 5982 Query 419 KHAFHTPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGG 478 KHAFHTPAYD AF LKP+PFFY+ + C+V + E ++YVPL+++ C+T CN+GG Sbjct 5983 KHAFHTPAYDKRAFVKLKPMPFFYFDDSDCDV-----VQEQVNYVPLRASSCVTRCNIGG 6037 Query 479 AVCRKHATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTK 522 AVC KHA Y++Y+EAYN + +GF +W +FD+YNLW F + Sbjct 6038 AVCSKHANLYQKYVEAYNTFTQAGFNIWVPHSFDVYNLWQIFIE 6081 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 5630 to 6137 Score:538 bits(1387), Expect:7e-171, Method:Compositional matrix adjust., Identities:268/518(52%), Positives:344/518(66%), Gaps:12/518(2%) Query 6 GLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDAT 65 GLFKDCSR L P++A T++S+ D +KT L V + + + Y VIS MGF+ D Sbjct 5630 GLFKDCSRGDDLLPPSHANTFMSLADNFKTDQYLAVQIGVNGPIKYEHVISFMGFRFDIN 5689 Query 66 VPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvgvv 125 +P + LF TR+ A+R VR W+GFDVEGAH + GTNVPLQLGFS GV+FVV+P G V Sbjct 5690 IPNHHTLFCTRDFAMRNVRGWLGFDVEGAHVVGSNVGTNVPLQLGFSNGVDFVVRPEGCV 5749 Query 126 DTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVC 185 TE G+ + + AR PPGEQF HL+PL+ +G W +VR+RIVQM SD L LSD FV Sbjct 5750 VTESGDYIKPVRARAPPGEQFAHLLPLLKRGQPWDVVRKRIVQMCSDYLANLSDILIFVL 5809 Query 186 WAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQ 245 WA G ELT+ YF KIG K C C + A Y+S L +Y C+ H+ G DY+YNP+ +D+Q Sbjct 5810 WAGGLELTTMRYFVKIG-PSKSCDCGKVATCYNSALHTYCCFKHALGCDYLYNPYCIDIQ 5868 Query 246 QWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKL 305 QWGY G+L+ NH +C+VH+ HVAS DAIMTRCLAIH CF++ VDW I YP+I +E + Sbjct 5869 QWGYKGSLSLNHHEHCNVHRNEHVASGDAIMTRCLAIHDCFVKNVDWSITYPFIGNEAVI 5928 Query 306 NSCCRIVERNVVRAALLAGSFDKVYDIGNPKGI--PIVDDPVVDWHYFDAQPLTRKVQQL 363 N RIV+ + +R+ L + +YDIGNPKGI + D W FD P V+ L Sbjct 5929 NKSGRIVQSHTMRSVLKLYNPKAIYDIGNPKGIRCAVTD---AKWFCFDKNPTNSNVKTL 5985 Query 364 FYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFH 423 Y +F DGLCLFWNCNV YP ++VCRFDTR S NL GC+GGSLYVN HAFH Sbjct 5986 EYDYITHGQF-DGLCLFWNCNVDMYPEFSVVCRFDTRCRSPLNLEGCNGGSLYVNNHAFH 6044 Query 424 TPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRK 483 TPA+D AF LKP+PFF+Y T C+ + + I+YVPL+++ CIT CN+GGAVC K Sbjct 6045 TPAFDKRAFAKLKPMPFFFYDDTECD-----KLQDSINYVPLRASNCITKCNVGGAVCSK 6099 Query 484 HATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFT 521 H Y Y+ AYN +++GF +W +FD YNLW TF+ Sbjct 6100 HCAMYHSYVNAYNTFTSAGFTIWVPTSFDTYNLWQTFS 6137 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 5598 to 6108 Score:537 bits(1383), Expect:2e-170, Method:Compositional matrix adjust., Identities:269/521(52%), Positives:347/521(66%), Gaps:12/521(2%) Query 6 GLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDAT 65 GLFKDC+R L P++A TY+S+ D++KTS +L V + Y VIS MGF+ D + Sbjct 5598 GLFKDCARNPIDLPPSHATTYLSLSDRFKTSGDLAVQIGNNNVCTYEHVISYMGFRFDVS 5657 Query 66 VPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvgvv 125 +PG LF TR+ A+R VR W+G DVEGAH + + GTNVPLQ+GFS GV+FV QP G V Sbjct 5658 MPGSHSLFCTRDFAMRHVRGWLGMDVEGAHVTGDNVGTNVPLQVGFSNGVDFVAQPEGCV 5717 Query 126 DTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVC 185 T G+++ + AR PPGEQF H+VPL+ KG W ++R+RIVQM++D L SD FV Sbjct 5718 LTNTGSVVKPVRARAPPGEQFTHIVPLLRKGQPWSVLRKRIVQMIADFLAGSSDVLVFVL 5777 Query 186 WAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQ 245 WA G ELT+ YF KIG K C C A Y+S Y C+ H+ G DYVYNP+ +D+Q Sbjct 5778 WAGGLELTTMRYFVKIGA-VKHCQCGTVATCYNSVSNDYCCFKHALGCDYVYNPYVIDIQ 5836 Query 246 QWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKL 305 QWGYVG+L+TNH C+VH+ HVAS DAIMTRCLA++ CF++ VDW I YP I++E + Sbjct 5837 QWGYVGSLSTNHHAICNVHRNEHVASGDAIMTRCLAVYDCFVKNVDWSITYPMIANENAI 5896 Query 306 NSCCRIVERNVVRAALLAGSFDKVYDIGNPKGI--PIVDDPVVDWHYFDAQPLTRKVQQL 363 N R V+ +++RAA+ + ++DIGNPKGI + D W+ +D P+ V+ L Sbjct 5897 NKGGRTVQSHIMRAAIKLYNPKAIHDIGNPKGIRCAVTD---AKWYCYDKNPINSNVKTL 5953 Query 364 FYTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFH 423 Y + M DGLCLFWNCNV YP +IVCRFDTR S NL G +GGSLYVN HAFH Sbjct 5954 EY-DYMTHGQMDGLCLFWNCNVDMYPEFSIVCRFDTRTRSTLNLEGVNGGSLYVNNHAFH 6012 Query 424 TPAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRK 483 TPAYD A LKP PFFYY CEV + + ++YVPL++ CIT CN+GGAVC K Sbjct 6013 TPAYDKRAMAKLKPAPFFYYDDGSCEV-----VHDQVNYVPLRATNCITKCNIGGAVCSK 6067 Query 484 HATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTFTKVQ 524 HA YR Y+E+YN+ + +GF +W TFD YNLW TFT+V Sbjct 6068 HANLYRAYVESYNIFTQAGFNIWVPTTFDCYNLWQTFTEVN 6108 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 5641 to 6147 Score:530 bits(1366), Expect:5e-168, Method:Compositional matrix adjust., Identities:258/516(50%), Positives:345/516(66%), Gaps:10/516(1%) Query 6 GLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVNLNLPANVPYSRVISRMGFKLDAT 65 GLFKDC + L P++APT++S+ D +KT +L V + + V Y VIS MGF+ D Sbjct 5641 GLFKDCYKGEDNLPPSHAPTFMSLSDNFKTDKDLAVQIGVNGPVKYEHVISFMGFRFDIN 5700 Query 66 VPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNACGTNVPLQLGFSTGvnfvvqpvgvv 125 VP LF TR+ A+R R W+GFDVEGAH + GTNVPLQLGFS GV+FVV+P G V Sbjct 5701 VPNQHTLFCTRDFAMRNARGWLGFDVEGAHVIGSNVGTNVPLQLGFSNGVDFVVRPEGCV 5760 Query 126 DTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVC 185 TE G+++ + AR PPG+QF HL+PL+ KG W ++RRRIVQM SD L LSD FV Sbjct 5761 STEVGDVIQPVRARAPPGDQFTHLLPLLRKGQPWSVIRRRIVQMCSDYLANLSDTLIFVL 5820 Query 186 WAHGFELTSASYFCKIGKEQKCCMCNRRAAAYSSPLQSYACWTHSCGYDYVYNPFFVDVQ 245 W+ G ELT+ YF K+G Q C C +RA Y+S +++C+ H+ G DY+YN + +D+Q Sbjct 5821 WSGGLELTTMRYFVKLGPVQT-CDCGKRATCYNSTNHTFSCFRHALGSDYIYNCYCIDIQ 5879 Query 246 QWGYVGNLATNHDRYCSVHQGAHVASNDAIMTRCLAIHSCFIERVDWDIEYPYISHEKKL 305 QWGY G+L+ NH C++H+ HVAS DA MTRCLAIH CF++ VDW I YP+I++E+ + Sbjct 5880 QWGYTGSLSMNHHEVCNIHRNEHVASGDAAMTRCLAIHDCFVKNVDWSITYPFIANEQAI 5939 Query 306 NSCCRIVERNVVRAALLAGSFDKVYDIGNPKGIP-IVDDPVVDWHYFDAQPLTRKVQQLF 364 N R+V+ +V+RA L + ++D+GNPKGI +V D W+ +D P V+ L Sbjct 5940 NKSGRLVQSHVMRAVLKLYNPKAIHDVGNPKGIRCVVTDA--SWYCYDKNPTNTNVKMLE 5997 Query 365 YTEDMASRFADGLCLFWNCNVPKYPNNAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFHT 424 Y + DGLCLFWNCNV YP ++VCRFDTR+ S NL GC+GGSLYVN HAFHT Sbjct 5998 YDYITHGQL-DGLCLFWNCNVDMYPEFSVVCRFDTRMRSTLNLEGCNGGSLYVNNHAFHT 6056 Query 425 PAYDVSAFRDLKPLPFFYYSTTPCEVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRKH 484 PAYD AF LK +PFF+Y + CE + + ++YVPL+++ CIT CN+GGAVC KH Sbjct 6057 PAYDKRAFAKLKAMPFFFYDDSECE-----KLQDAVNYVPLRASNCITRCNVGGAVCSKH 6111 Query 485 ATEYREYMEAYNLVSASGFRLWCYKTFDIYNLWSTF 520 Y Y+ AYN + +GF +W +FD++NLW TF Sbjct 6112 CALYHNYVMAYNTFTTAGFTIWVPNSFDMFNLWQTF 6147 >RecName: Full=Tryptophan synthase alpha chain [Streptococcus gordonii str. Challis substr. CH1] Sequence ID: A8AW06.1 Length: 259 Range 1: 1 to 91 Score:33.1 bits(74), Expect:4.7, Method:Compositional matrix adjust., Identities:28/98(29%), Positives:39/98(39%), Gaps:17/98(17%) Query 276 MTRCLAIHSCFIERVDWDIEYPYI---SHEKKLNSCCRIVERNVVRAALLAGSFDKVYDI 332 MT+ L H I+R I PYI HEK L + A L +I Sbjct 1 MTKTLTQHLETIKREGKGIFLPYIMAGDHEKGLAGLAETI-------AFLENLGVSAIEI 53 Query 333 GNPKGIPIVDDPVVD-------WHYFDAQPLTRKVQQL 363 G P P+ D PV++ H+ A+ L +Q+L Sbjct 54 GLPFSDPVADGPVIEEAGLRSLGHHTSAKSLVASLQKL 91 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 6049 to 6182 Score:33.1 bits(74), Expect:8.7, Method:Compositional matrix adjust., Identities:33/135(24%), Positives:52/135(38%), Gaps:8/135(5%) Query 154 HKGAAWPIVRRRIVQMLSDTLDKLSDYCTFVCWAHGFELTSASYFCKIGKEQKCCMCNRR 213 HK + I R ++ S + +V + G +L + + +G + C C + Sbjct 6049 HKAISQQINTDRTHKIFSHMAATTLNRVVYVLYGAGNDLRALTNLNIVG-DYTCEKCTKE 6107 Query 214 AAAYSSPLQSYACW-THSCGYDY----VYNPFFVDVQQWGYVGNLATN-HDRYCSVHQG- 266 A Y+ + + H + N +D+Q TN H C+ G Sbjct 6108 ATFYTIHREIVHTFCNHHAPSQFPLMGTINAQAIDIQHASANKQSLTNTHAEVCNQQHGD 6167 Query 267 AHVASNDAIMTRCLA 281 AH AS D IMT CLA Sbjct 6168 AHTASADTIMTGCLA 6182