79567504 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 48396 + 0 supplementary 0 + 0 duplicates 10961608 + 0 mapped (13.78% : N/A) 79519108 + 0 paired in sequencing 39759554 + 0 read1 39759554 + 0 read2 8617706 + 0 properly paired (10.84% : N/A) 9539554 + 0 with itself and mate mapped 1373658 + 0 singletons (1.73% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)