12335266 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 48396 + 0 supplementary 0 + 0 duplicates 10961608 + 0 mapped (88.86% : N/A) 12286870 + 0 paired in sequencing 6143435 + 0 read1 6143435 + 0 read2 8617706 + 0 properly paired (70.14% : N/A) 9539554 + 0 with itself and mate mapped 1373658 + 0 singletons (11.18% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)