LOCUS       KX583629                4857 bp    DNA     linear   VRL 11-SEP-2016
DEFINITION  Adeno-associated virus isolate MHH-05-2015, complete genome.
ACCESSION   KX583629
VERSION     KX583629.1
KEYWORDS    .
SOURCE      Adeno-associated virus
  ORGANISM  Adeno-associated virus
            Viruses; Parvoviridae; Parvovirinae; Dependoparvovirus;
            unclassified Dependoparvovirus.
REFERENCE   1  (bases 1 to 4857)
  AUTHORS   Su,X.
  TITLE     Isolation and genetic characterization of a novel adeno-associated
            virus from Muscovy duck in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4857)
  AUTHORS   Su,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2016) College of Animal Science, South China
            Agricultural University, Wushan Road, Tianhe District, Guangzhou,
            Guangdong 510642, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: DNAstar v. 7
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..4857
                     /organism="Adeno-associated virus"
                     /mol_type="genomic DNA"
                     /isolate="MHH-05-2015"
                     /host="Muscovy duck"
                     /db_xref="taxon:272636"
                     /country="China"
                     /collection_date="May-2015"
     repeat_region   1..174
                     /rpt_type=long_terminal_repeat
     CDS             431..2377
                     /note="nonstructural protein"
                     /codon_start=1
                     /product="rep protein"
                     /protein_id="AOL02446.1"
                     /translation="MTTPTYYELIVELPSDIDTQLPLVSDSFVRWVTSKTWEPPLDSK
                     WDMDQVDQVQLTLGDKIQREILKQWRTITGDPDPKYYVQLEQGETYFHLHTLLQCCNI
                     KPLVLGRYVKQIEKKLVSTVYGGHNPLIDNWLRITKTKSIGGSNKIRAQSYIPAYLIP
                     KKQPEVQWAWTNIEEYIKAVLNSELRHQIGEAHFQEQGLALRDSTNLSRNSEGAPIIV
                     SKCTKKYMELVEWLVEKGITTEKQWLLENKESFRSFQASSNSARQIKAALQGATQEML
                     LTKTASDYLIGKDPIGDMTDNRIYKILEMNGYDPLYVANLFVGWCQMKFGKRNTIWLF
                     GPATTGKTNIAEAIAHAVPFYGCVNWTNENFPFNDCLEKMIIWWEEGKMTAKIVETAK
                     AILGGSKVRVDQKCKSSMQLEPTPVIITSNTNMCYVVDGNTTTFEHAQPLQDRMFKLE
                     LLKRLPDDFGKVTKKEVRDFFAWGAKHTVEVDSCFLVRKAESRKRHAPEVASEDKSPP
                     AKAARTDELQHLSGEEGTSVSARYVLKCAKHLGMVTMMWPCRDCEKANCNINQCILHK
                     SLSCKECFPDYDSDVSVQEGEPSGNPPLSSSDEDIPSHQPPLVKDCKPWTPCSYHHLT
                     GVANRNCSMCKLRNVDLDDCDSEQ"
     CDS             2395..4611
                     /note="structural protein"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AOL02447.1"
                     /translation="MSAADSVPDWLENFVRKHIVNPVAEFAHLEAGAPQPKPNQQHQD
                     RGGTKDDSRGLVLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYDQQLQAGDNPYLK
                     YNHADAEFQEALKDDTSFGGNLGKAVFQAKKRVLEPFGLAEDGKTAPTNERRKENIDD
                     YYPKRKKAKAGEEKPPSTDAVEGAGDGEPSTSTGGETPSGTQSNTMSAGGGAPMGDDQ
                     QGADGVGNSSGNWHCDSTWLDNLVITKSTRTWVLPSYNNHIYKRVSNTGGDNSYFGFS
                     TPWGYFDFNRFHCHFSPRDWQRLINNNWGIRPKALKFKLFNIQVKEVTTQDSTKTVAN
                     NLTSTIQVFADSEYQLPYVVGNASEGCLPPFPADVFVLPQYGYLTLDNNGNSVDRSAF
                     YCLEYFPSQMLRTGNNFEFTYEFEKVPFHSMFAHNQSLSRLMNPLVDQYLYYFSNVSG
                     PNNAAQIRYDKGRKEDIAGQCRNWLPGPFWQNQSVRLDNANNNPKWDYWANSNRVRLD
                     GKLYSVNPGIPQATEATQNPYNQYPTQSTLVFEKKPGGNPTGVDPNNLNLTKDEEIRT
                     TNPVAYAVSGTVTGTSAINQNNGASQTPTASDVDILGAMPGMVWQNRDIYLQGPIWAK
                     IPSTDNHFHPCPLMGGFGFKHPPPQILIKNTPVPSDPAGFSATKFNSFITQYSTGQVT
                     VEIMWELQKETSKRWNPEIQFTSNFNATQELQFAPNVSGDYEEPRAIGSRYLTKPL"
     repeat_region   4684..4857
                     /rpt_type=long_terminal_repeat
ORIGIN      
        1 gtcatacttt ctcacaataa gcttgtcctc ctccccccaa taacacgctc gctcgctcgc
       61 tcgggacaac cgggcgaagc ccggttgcaa gcgcccttcg ggcgcttgtc ccgagcgagc
      121 gagcgagcgt gttattgggg ggaggaggac aagcttattg tgagaaagta tgaccaaagt
      181 acgtaggcca gataccgtag gggttacaca accaggttgt aacacttggg tgtctgggtt
      241 cgatttccag tctggccgtg tagggagggc gtgattcttc atcaaagtgg tgggtggaga
      301 atctgaccct tcttttttct cgcgagactt tgcgagattt ccaaatatcg cgagacctta
      361 acagtataaa gtgagcgcga gcgagcgacc gcgccagacg ccatcacgcc gttgatccct
      421 acacaccaag atgacgacac ctacgtacta cgagctgatt gtggagctgc cgagcgacat
      481 tgacactcaa ctccccctgg tcagcgacag ctttgtgcga tgggtgacga gcaagacgtg
      541 ggaacccccc ctggacagca aatgggacat ggaccaagtg gaccaagtcc agctgactct
      601 cggagacaag attcaacggg aaattttaaa acagtggagg accattaccg gagaccctga
      661 tccgaaatat tacgtccagc tggagcaagg agagacgtac tttcacctgc acacgttgct
      721 gcagtgctgc aacattaagc cgttggtcct cggaagatat gtcaaacaga ttgagaaaaa
      781 gctggtgagt accgtctacg gggggcacaa tcctctgatc gacaattggc tccgaattac
      841 caagacaaaa tcgatcgggg gctccaataa aattcgcgcg caaagctaca ttcccgccta
      901 tctcattccc aaaaaacaac cggaagttca gtgggcgtgg acaaatatcg aggagtatat
      961 aaaggccgtt ttaaactctg aattgcgtca tcaaattgga gaagcgcatt tccaggagca
     1021 aggcctcgct ctgcgcgaca gcaccaacct atcgagaaac tctgaggggg ctcccatcat
     1081 cgtcagcaag tgcaccaaga aatacatgga gctcgtcgag tggctggtcg agaagggcat
     1141 cacgaccgag aagcaatggc tcttggaaaa caaggagagc tttcgctcct tccaggcctc
     1201 gagcaactcg gctcgccaaa tcaaggcggc ccttcagggc gccactcagg aaatgctcct
     1261 caccaagacg gcgtcagact acctgattgg caaagacccc atcggagaca tgaccgacaa
     1321 ccgaatctac aaaattttgg aaatgaacgg ctacgaccct ctctacgtgg ccaacctgtt
     1381 tgtaggttgg tgtcagatga agtttggaaa acgaaacaca atctggctgt ttggacctgc
     1441 gaccacgggc aagaccaaca ttgcggaggc tattgcccat gctgtgccct tttatggatg
     1501 cgtcaactgg accaacgaaa actttccctt caacgactgc ctggaaaaga tgatcatttg
     1561 gtgggaagag gggaaaatga cggccaagat tgtagagacg gctaaagcca tcctcggggg
     1621 atccaaggtt cgcgtcgacc aaaagtgcaa gtcttcgatg cagctggaac ctacgccggt
     1681 catcattacc agcaacacca acatgtgtta tgtcgtggat ggaaacacga ccacctttga
     1741 gcacgctcaa cccctacagg accgaatgtt taagctggaa ctcttgaagc gacttcccga
     1801 cgactttgga aaagtgacca aaaaggaagt cagagacttt ttcgcgtggg gggctaaaca
     1861 taccgtagag gtcgattctt gctttttagt aagaaaggcg gagtctcgta aaagacacgc
     1921 cccggaagtg gcatcagagg ataaaagccc tcccgctaag gcggctcgca cagacgagct
     1981 tcagcatttg agcggcgagg agggaacctc tgtctctgcc aggtatgttt tgaaatgcgc
     2041 taaacatttg gggatggtaa ccatgatgtg gccatgtaga gattgtgaaa aggccaattg
     2101 taatataaat cagtgcattt tgcataaaag tttgtcttgt aaagagtgtt ttccagatta
     2161 tgattccgat gtatctgttc aggaaggcga gccttccggc aaccccccct tgtcgagctc
     2221 cgacgaggac attccctctc accaaccccc ccttgtcaaa gattgtaaac cctggactcc
     2281 gtgttcctat caccacctga ccggggtagc caatagaaat tgtagcatgt gcaaattgag
     2341 aaatgtggat ttggatgatt gtgacagtga gcaataaaat gacttaaact agacatgtct
     2401 gctgctgatt ctgttccaga ttggttggag aattttgtgc gcaagcacat tgtcaatccg
     2461 gttgccgaat ttgctcattt ggaggctgga gccccacaac caaagcctaa ccagcagcat
     2521 caagatcgag gcggaaccaa ggacgatagc cgaggtcttg ttttacctgg ctacaagtat
     2581 cttggtcctt ttaacggtct tgacaagggt gaacccgtca acgctgctga cgctgctgcg
     2641 ctcgagcacg acaaggcgta cgaccagcag ctgcaagcgg gagacaaccc ctatctgaaa
     2701 tataaccacg cagacgccga atttcaagag gccctaaagg acgacacatc ctttggggga
     2761 aatctcggta aagcggtatt ccaggccaaa aagagggttc tcgaaccctt tggcttggct
     2821 gaagacggaa agacggctcc taccaacgaa cgtcgaaagg agaatataga cgactactat
     2881 cccaagagga aaaaagccaa ggcgggagaa gaaaagcccc cttctaccga cgcagtagaa
     2941 ggagctggag acggagaacc aagcacatct accggagggg aaacccccag cggtactcaa
     3001 tctaatacaa tgtctgcagg gggcggcgca ccaatgggcg atgaccaaca gggtgccgat
     3061 ggagtgggta attcctcggg aaattggcat tgcgattcca catggctgga caatcttgtc
     3121 atcaccaagt ccacccgaac ctgggtcctg cccagctaca acaaccacat ctacaagcga
     3181 gtctccaaca cgggaggaga caactcgtac tttggattca gcaccccgtg gggatacttt
     3241 gactttaacc gattccactg ccacttttca ccgcgagact ggcaacggct catcaacaac
     3301 aactggggaa tccgacccaa ggccctcaag tttaagctct tcaacatcca agtcaaagag
     3361 gtcacgactc aagactcgac caagaccgtc gccaataacc tcaccagcac tattcaagtc
     3421 tttgcggact cggaatatca gctaccgtat gtagtgggca acgcgtccga gggatgcctg
     3481 cctccctttc ccgcggacgt ctttgtgctg ccgcagtacg gatacctgac tttggacaat
     3541 aacggaaact ctgtcgacag aagcgccttt tactgtctcg agtactttcc gagtcagatg
     3601 ctgagaacgg gcaacaattt tgaatttacc tacgaatttg aaaaggtgcc gttccacagc
     3661 atgtttgctc acaaccagtc gctgagtcgg ctaatgaatc cgttggtgga ccagtacttg
     3721 tactacttta gcaacgtctc ggggcctaac aacgctgccc agattcgtta cgacaagggt
     3781 cgtaaggaag acattgccgg ccaatgcaga aattggctcc ccggaccatt ttggcaaaat
     3841 cagagcgtgc gtctggacaa tgccaacaac aatcccaagt gggattactg ggcaaactcg
     3901 aatcgagtaa ggctggacgg caaattgtac tccgtcaacc ctggaattcc tcaagccaca
     3961 gaagctacgc agaatcccta caaccagtat ccgacgcagt cgactctggt gtttgaaaag
     4021 aagcccggag gaaaccccac cggagtagat ccaaacaatc tcaaccttac caaggatgaa
     4081 gaaattagaa ccaccaatcc cgtggcctat gccgtgtcag gaacagtcac cggaacgtcg
     4141 gccatcaatc aaaacaatgg agccagtcag actcctacgg cttccgacgt ggacattttg
     4201 ggagccatgc ccggaatggt gtggcaaaat agagacattt atctgcaagg gcccatttgg
     4261 gccaagattc cctccacaga caatcatttt catccttgtc ctctcatggg aggattcgga
     4321 ttcaagcatc cgcctccgca gattctcatc aaaaacacac cggtgccgtc agaccctgcg
     4381 ggattttcag cgaccaagtt caactcgttc atcactcagt attccaccgg acaagtcacc
     4441 gtggaaatca tgtgggaact acaaaaggaa acgtccaaga ggtggaatcc agaaattcag
     4501 tttacgtcca atttcaacgc cacccaagaa ctgcagtttg cacccaacgt gtctggagac
     4561 tacgaagaac ccagagccat cggctcgaga tatctcacca aacctctgta acttgtattt
     4621 attcattgtt tgtatcattt attcaataaa ccgtttattc gtttcagttt caattcgact
     4681 cgcgtcatac tttctcacaa taagcttgtc ctcctccccc caataacacg ctcgctcgct
     4741 cgctcgggac aagcgcccga agggcgcttg caaccgggct tcgcccggtt gtcccgagcg
     4801 agcgagcgag cgtgttattg gggggaggag gacaagctta ttgtgagaaa gtatgac
//