TBLASTN 2.2.28+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= TBP_HUMAN P20226 TATA-box-binding protein (TATA sequence-binding
protein) (TATA-binding factor {ECO:0000303|PubMed:2194289,
ECO:0000303|PubMed:2374612}) (TATA-box factor) (Transcription
initiation factor TFIID TBP subunit)

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  unplaced-986                                                         314    2e-95
  scaffold-199                                                        28.9    5.0  


> unplaced-986
Length=34130

 Score =  314 bits (804),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 145/180 (81%), Positives = 166/180 (92%), Gaps = 0/180 (0%)
 Frame = +3

Query  159   SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGK  218
             SGIVP LQNIV+TVNL CKLDLKTIAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct  7329  SGIVPTLQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK  7508

Query  219   MVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQ  278
             +V TGA+SE+ ++LAARKYAR+VQKLGFPAKF++FK+QN+V SCD++FPIRLEGL   H 
Sbjct  7509  LVVTGARSEDLAKLAARKYARIVQKLGFPAKFIEFKVQNIVASCDIRFPIRLEGLAFAHS  7688

Query  279   QFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT  338
              +SSYEPELFPGLIYRM+KP++VLLIFVSGKVVLTGAKVR EIYEAFE IYP+L+ FRKT
Sbjct  7689  HYSSYEPELFPGLIYRMVKPKVVLLIFVSGKVVLTGAKVREEIYEAFEMIYPVLQEFRKT  7868


> scaffold-199
Length=1112851

 Score = 28.9 bits (63),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 8/22 (36%), Positives = 16/22 (73%), Gaps = 0/22 (0%)
 Frame = +2

Query  277     HQQFSSYEPELFPGLIYRMIKP  298
               H+ +++  P L PG++YR+ +P
Sbjct  248684  HKSYTAIHPNLHPGIMYRLARP  248749



Lambda      K        H        a         alpha
   0.321    0.137    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1872587760


  Database: X5.fasta
    Posted date:  Dec 10, 2019  3:48 AM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40