RID: 0V6M6BR7016 Job Title:nsP1_EEEV Q306W6 Mature mRNA-capping enzyme... Program: BLASTP Query: nsP1_EEEV Q306W6 Mature mRNA-capping enzyme (1-533) ID: lcl|Query_9524735(amino acid) Length: 533 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 1115 1115 100% 0.0 100.00 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 1083 1083 100% 0.0 96.44 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 1022 1022 100% 0.0 93.06 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 952 952 100% 0.0 84.99 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 802 802 100% 0.0 69.72 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 800 800 100% 0.0 69.35 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 800 800 100% 0.0 69.35 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 777 777 100% 0.0 68.97 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 776 776 100% 0.0 68.79 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 747 747 100% 0.0 68.22 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 716 716 100% 0.0 64.62 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 716 716 100% 0.0 65.73 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 716 716 100% 0.0 65.54 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 714 714 100% 0.0 63.55 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 714 714 100% 0.0 63.74 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 706 706 100% 0.0 62.99 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 705 705 100% 0.0 64.49 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 698 698 100% 0.0 63.74 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 696 696 100% 0.0 64.86 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 668 668 99% 0.0 60.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 664 664 99% 0.0 59.63 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 654 654 96% 0.0 61.24 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 638 638 100% 0.0 59.44 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 411 411 98% 1e-126 43.34 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 407 407 85% 4e-125 46.54 2601 Q8JJX1.1 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 43.9 43.9 15% 0.004 32.91 1694 Q05983.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 37.7 37.7 21% 0.33 27.35 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 37.0 37.0 15% 0.54 28.05 1629 P89202.2 RecName: Full=Replication protein alpha-A; Includes: RecName:... Barley strip... NA 12327 36.6 36.6 15% 0.62 24.71 1139 P17595.1 RecName: Full=Replication protein 1a; Includes: RecName:... Broad bean m... NA 12301 36.2 36.2 37% 0.81 22.33 966 Q00020.1 RecName: Full=Replicase large subunit; AltName: Full=209 kDa... Soil-borne w... NA 652673 36.2 36.2 17% 0.82 24.73 1828 Q89249.1 RecName: Full=Replication protein 1a; Includes: RecName:... Pelargonium ... NA 650488 35.4 35.4 11% 1.4 32.14 962 Q9DUT3.1 RecName: Full=Protein SFI1 homolog; Short=hSFI1 [Homo sapiens] Homo sapiens human 9606 34.3 34.3 15% 3.3 27.16 1242 A8K8P3.2 RecName: Full=LPS-assembly protein LptD; Flags: Precursor... Pseudoaltero... NA 326442 34.3 34.3 14% 3.4 29.63 748 Q3IFD4.2 RecName: Full=Replication protein 1a; Includes: RecName:... Alfamovirus AMV NA 12321 34.3 34.3 26% 3.7 25.52 1126 P03589.1 RecName: Full=Tubulin gamma-1 chain; AltName:... Zea mays NA 4577 33.1 33.1 33% 7.1 23.33 469 Q41807.1 RecName: Full=Tubulin gamma-3 chain; AltName:... Zea mays NA 4577 32.7 32.7 41% 8.7 21.30 421 Q41874.1 RecName: Full=Hyaluronidase-2; Short=Hyal-2; AltName:... Homo sapiens human 9606 32.7 32.7 16% 9.7 23.96 473 Q12891.4 RecName: Full=Lysophospholipase nte1; AltName:... Aspergillus ... NA 344612 32.7 32.7 21% 9.9 31.09 1528 A1C9L6.2 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1 to 533 Score:1115 bits(2885), Expect:0.0, Method:Compositional matrix adjust., Identities:533/533(100%), Positives:533/533(100%), Gaps:0/533(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV Sbjct 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV 120 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV Sbjct 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV 120 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP Sbjct 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS Sbjct 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN Sbjct 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL Sbjct 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA Sbjct 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII Sbjct 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA Sbjct 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1 to 533 Score:1083 bits(2802), Expect:0.0, Method:Compositional matrix adjust., Identities:514/533(96%), Positives:523/533(98%), Gaps:0/533(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVDLDADSPYVK LQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV Sbjct 1 MEKVHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV 120 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRL RYADKLRKSDVTDRFIASKAADLLTV Sbjct 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLQRYADKLRKSDVTDRFIASKAADLLTV 120 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP Sbjct 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHE+R GKISIMRKKKLQPTNKVVFS Sbjct 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNKVVFS 240 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSC+GYVVKKITISPGIYGKVDN Sbjct 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYGKVDN 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 LAST+HREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL Sbjct 301 LASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFSRWAREY ADLEDEKDLGVRERSLVMGCCWA Sbjct 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDLGVRERSLVMGCCWA 420 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FKTHKITSIYKKPGTQT KKVPAVFNSFV+PQ SYGL+I LRRRIKMLLEEK+KPAPII Sbjct 421 FKTHKITSIYKKPGTQTIKKVPAVFNSFVIPQFNSYGLNIGLRRRIKMLLEEKRKPAPII 480 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 TEADVAHLKGMQEEAE VAEAEA+RAALPPLLPEVERET+EADIDLIMQEAGA Sbjct 481 TEADVAHLKGMQEEAEAVAEAEAVRAALPPLLPEVERETIEADIDLIMQEAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1 to 533 Score:1022 bits(2643), Expect:0.0, Method:Compositional matrix adjust., Identities:496/533(93%), Positives:516/533(96%), Gaps:0/533(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVDLDADSP+VKSLQ+CFPHFEIEATQVTDNDHANARAFSHLATKLIE EVD DQV Sbjct 1 MEKVHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTDQV 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV 120 ILDIGSAPVRHTHSKHKYHCICPM SAEDPDRL+RYADKLRKSDVTD+ IASKAADLLTV Sbjct 61 ILDIGSAPVRHTHSKHKYHCICPMKSAEDPDRLYRYADKLRKSDVTDKCIASKAADLLTV 120 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 MSTPD ETPSLCMHTDSTCRYHG+VAVYQDVYAVHAPTSIY+QALKGVRTIYWIGFDTTP Sbjct 121 MSTPDAETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGFDTTP 180 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FMYKNMAGAYPTYNTNWADESVLEARNIGL SSDLHE+ FGK+SIMRKKKLQPTNKV+FS Sbjct 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNKVIFS 240 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKIT+SPGIYGKVDN Sbjct 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYGKVDN 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL Sbjct 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFSRWARE+ ADLEDEK LGVRERSLVMGCCWA Sbjct 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGLGVRERSLVMGCCWA 420 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FKTHKITSIYK+PGTQT KKVPAVFNSFV+PQ TSYGLDI LRRRIKML + KK PAPII Sbjct 421 FKTHKITSIYKRPGTQTIKKVPAVFNSFVIPQPTSYGLDIGLRRRIKMLFDAKKAPAPII 480 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 TEADVAHLKG+Q+EAE VAEAEA+RAALPPLLPEV++ETVEADIDLIMQEAGA Sbjct 481 TEADVAHLKGLQDEAEAVAEAEAVRAALPPLLPEVDKETVEADIDLIMQEAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1 to 533 Score:952 bits(2460), Expect:0.0, Method:Compositional matrix adjust., Identities:453/533(85%), Positives:497/533(93%), Gaps:0/533(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 ME++HVDLDADSPYVKSLQ+ FP FEIEA QVTDNDHANARAFSH+ATKLIESEVD DQV Sbjct 1 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQV 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTV 120 ILDIGSAPVRH HS H+YHCICPMISAEDPDRL RYA++L+KSD+TD+ IASKAADLL V Sbjct 61 ILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERLKKSDITDKNIASKAADLLEV 120 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 MSTPD ETPSLCMHTD+TCRY G+VAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP Sbjct 121 MSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FMYKNMAG+YPTYNTNWADE VLEARNIGL +SDL E R GK+SI+RKK+LQPTNK++FS Sbjct 181 FMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFS 240 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGSTIYTE+R LLRSWHLPNVFHLKGK++FTGRC TIVSCEGYV+KKITISPG+YGKV+N Sbjct 241 VGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 LASTMHREGFLSCKVTDTLRGERVSF VCTYVPATLCDQMTGILATDVSVDDAQKLLVGL Sbjct 301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFSRWARE+ ADL+DEK+LGVRER+L MGCCWA Sbjct 361 NQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKELGVRERTLTMGCCWA 420 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FKT KITSIYKKPGTQT KKVPAVF+SFV+P+LTS+GLD+ RRR+K+LLE KPAP I Sbjct 421 FKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAI 480 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 T ADV HL+G+Q+EAE VA AE IR ALPPLLPE+E+ETVEA++DLIMQEAGA Sbjct 481 TMADVEHLRGLQQEAEEVAAAEEIREALPPLLPEIEKETVEAEVDLIMQEAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1 to 535 Score:802 bits(2071), Expect:0.0, Method:Compositional matrix adjust., Identities:373/535(70%), Positives:447/535(83%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVD++ DSP++++LQ+ FP FE+EA QVTDNDHANARAFSHLA+KLIE+EVDP Sbjct 1 MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDT 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R +SKHKYHCICPM AEDPDRL++YA KL+K+ ++TD+ + K +L Sbjct 61 ILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VMS PD+ET ++C+H D +CRY G VAVYQDVYAV PTS+YHQA KGVR YWIGFDT Sbjct 121 AVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFM+KN+AGAYP+Y+TNWADE+VL ARNIGLCSSD+ E+ +SI+RKK L+P+N V+ Sbjct 181 TPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGSTIY E+R LLRSWHLP+VFHL+GK ++T RC TIVSC+GYVVK+I ISPG+YGK Sbjct 241 FSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYGKP 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A+TMHREGFL CKVTDTL GERVSFPVCTYVPATLCDQMTGILATDVS DDAQKLLV Sbjct 301 SGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+VAQAF+RWA+EY D EDE+ LG+R+R LVMGCC Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCC 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HKITSIYK+P TQT KV + F+SFV+P++ S L+I LR RI+ +LEE K+P+P Sbjct 421 WAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEPSP 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 +IT DV K +EA+ V EAE +RAALPPL +VE T+EAD+DL++QEAGA Sbjct 481 LITAEDVQEAKCAADEAKEVREAEELRAALPPLAADVEEPTLEADVDLMLQEAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1 to 535 Score:800 bits(2066), Expect:0.0, Method:Compositional matrix adjust., Identities:371/535(69%), Positives:446/535(83%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVD++ DSP++++LQ+ FP FE+EA QVTDNDHANARAFSHLA+KLIE+EVDP Sbjct 1 MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDT 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R +SKHKYHCICPM AEDPDRL++YA KL+K+ ++TD+ + K +L Sbjct 61 ILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VMS PD+ET ++C+H D +CRY G VAVYQDVYAV PTS+YHQA KGVR YWIGFDT Sbjct 121 AVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFM+KN+AGAYP+Y+TNWADE+VL ARNIGLCSSD+ E+ +SI+RKK L+P+N V+ Sbjct 181 TPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGSTIY E+R LLRSWHLP+VFHL+GK ++T RC TIVSC+GYVVK+I ISPG+YGK Sbjct 241 FSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYGKP 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A+TMHREGFL CKVTDTL GERVSFPVCTYVPATLCDQMTGILATDVS DDAQKLLV Sbjct 301 SGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+VAQAF+RWA+EY D EDE+ LG+R+R LVMGCC Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCC 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HKITSIYK+P TQT KV + F+SFV+P++ S L+I LR RI+ +LEE K+P+P Sbjct 421 WAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEPSP 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 +IT D+ K +EA+ V EAE +RAALPPL + E T+EAD+DL++QEAGA Sbjct 481 LITAEDIQEAKCAADEAKEVREAEELRAALPPLAADFEEPTLEADVDLMLQEAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1 to 535 Score:800 bits(2066), Expect:0.0, Method:Compositional matrix adjust., Identities:371/535(69%), Positives:446/535(83%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVD++ DSP++++LQ+ FP FE+EA QVTDNDHANARAFSHLA+KLIE+EVDP Sbjct 1 MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDT 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R +SKHKYHCICPM AEDPDRL++YA KL+K+ ++TD+ + K +L Sbjct 61 ILDIGSAPARRMYSKHKYHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VMS PD+ET ++C+H D +CRY G VAVYQDVYAV PTS+YHQA KGVR YWIGFDT Sbjct 121 AVMSDPDLETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFM+KN+AGAYP+Y+TNWADE+VL ARNIGLCSSD+ E+ +SI+RKK L+P+N V+ Sbjct 181 TPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGSTIY E+R LLRSWHLP+VFHL+GK ++T RC TIVSC+GYVVK+I ISPG+YGK Sbjct 241 FSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYGKP 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A+TMHREGFL CKVTDTL GERVSFPVCTYVPATLCDQMTGILATDVS DDAQKLLV Sbjct 301 SGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+VAQAF+RWA+EY D EDE+ LG+R+R LVMGCC Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCC 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HKITSIYK+P TQT KV + F+SFV+P++ S L+I LR RI+ +LEE K+P+P Sbjct 421 WAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLEEHKEPSP 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 +IT D+ K +EA+ V EAE +RA LPPL +VE T+EAD+DL++QEAGA Sbjct 481 LITAEDIQEAKCAADEAKEVREAEELRAVLPPLAADVEEPTLEADVDLMLQEAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1 to 535 Score:777 bits(2007), Expect:0.0, Method:Compositional matrix adjust., Identities:369/535(69%), Positives:441/535(82%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVD++ DSP++++LQ+ FP FE+EA QVTDNDHANARAFSHLA+KLIE+EV+P Sbjct 1 MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDT 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R +SKHKYHCICPM AEDPDRL +YA KL+K+ D+TD+ + K +L Sbjct 61 ILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKELA 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VMS PD+ET ++C+H D TCR+ G VAVYQDVYAV PTS+YHQA KGVR YWIGFDT Sbjct 121 EVMSDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFM+KN+AGAYP+Y+TNWADE+VL ARNIGLCSSD+ E+ +SI+RKK L+P+N V+ Sbjct 181 TPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNNVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGSTIY E+R LLRSWHLP+VFHL+GK ++T RC TIVSC+GYVVK+I ISPG+YGK Sbjct 241 FSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYGKP 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A+TMHREGFL CKVTDTL GERVSFPVCTYVPATLCDQMTGILATDVS DDAQKLLV Sbjct 301 SGYAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+VAQAF+RWA+EY D EDE+ LG+R+R LVMGCC Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCC 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HKITS+YK+P TQT KV + F+SFV+P++ S L+I LR RI+ LLEE P Sbjct 421 WAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKLLEEPVDRPP 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 +IT D+ K +EA+ V EAE +RAALPPL +VE +EAD+DL++QEAGA Sbjct 481 LITADDIQEAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQEAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1 to 535 Score:776 bits(2004), Expect:0.0, Method:Compositional matrix adjust., Identities:368/535(69%), Positives:441/535(82%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 MEKVHVD++ DSP++++LQ+ FP FE+EA QVTDNDHANARAFSHLA+KLIE+EV+P Sbjct 1 MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDT 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R +SKHKYHCICPM AEDPDRL +YA KL+K+ ++TD+ + K +L Sbjct 61 ILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKELA 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ PD+ET ++C+H D TCR+ G VAVYQDVYAV PTS+YHQA KGVR YWIGFDT Sbjct 121 EVMNDPDLETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFM+KN+AGAYP+Y+TNWADE+VL ARNIGLCSSD+ E+ +SI+RKK L+P+N V+ Sbjct 181 TPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPSNNVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGSTIY E+R LLRSWHLP+VFHL+GK ++T RC TIVSC+GYVVK+I ISPG+YGK Sbjct 241 FSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYGKP 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A+TMHREGFL CKVTDTL GERVSFPVCTYVPATLCDQMTGILATDVS DDAQKLLV Sbjct 301 SGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+VAQAF+RWA+EY D EDE+ LG+R+R LVMGCC Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCC 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HKITS+YK+P TQT KV + F+SFV+P++ S L+I LR RIK LLEE P Sbjct 421 WAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIKKLLEEPVDRPP 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 +IT D+ K +EA+ V EAE +RAALPPL +VE +EAD+DL++QEAGA Sbjct 481 LITADDIQEAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQEAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 4 to 537 Score:747 bits(1929), Expect:0.0, Method:Compositional matrix adjust., Identities:365/535(68%), Positives:423/535(79%), Gaps:5/535(0%) Query 3 KVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL 62 KVHVD++ADSP++KSLQK FP FE+E+ QVT NDHANARAFSHLATKLIE E D D +IL Sbjct 4 KVHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDTLIL 63 Query 63 DIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSD--VTDRFIASKAADLLTV 120 DIGSAP R S HKYHC+CPM SAEDP+RL YA KL + V DR IA K DL TV Sbjct 64 DIGSAPSRRMMSTHKYHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQTV 123 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD E+P+ C+HTD TCR VAVYQDVYAVHAPTS+YHQA+KGVRT YWIGFDTTP Sbjct 124 MATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFDTTP 183 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FM+ +AGAYPTY TNWADE VL+ARNIGLC++ L E R GK+SI+RKK+L+P + V+FS Sbjct 184 FMFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTVMFS 243 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGST+YTE R LLRSWHLP+VFHLKGK SFT RC+TIVSCEGYVVKKIT+ PG+YGK Sbjct 244 VGSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGKTVG 303 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CK TDT++GERVSFPVCTYVP+T+CDQMTGILATDV+ +DAQKLLVGL Sbjct 304 YAVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLLVGL 363 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLPIVA AFS+WAREY ADL+DEK LGVRERSL C WA Sbjct 364 NQRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCCLWA 423 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FKT K+ ++YKKP TQT KVP+ FNSFV+P L S GL I +R RIKMLL +K K +I Sbjct 424 FKTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTK-RELI 482 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERET--VEADIDLIMQEAGA 533 D + + ++E + EAE R ALPPL+P ET V+ D++ + AGA Sbjct 483 PVLDASSARDAEQEEKERLEAELTREALPPLVPIAPAETGVVDVDVEELEYHAGA 537 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1 to 536 Score:716 bits(1848), Expect:0.0, Method:Compositional matrix adjust., Identities:347/537(65%), Positives:422/537(78%), Gaps:5/537(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 M KV VD++A+SP++KSLQ+ FP FE+EA QVT NDHANARAFSHLATKLIE E + D + Sbjct 1 MSKVFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETEKDTL 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R S+H YHC+CPM SAEDP+RL YA KL K+ +V DR IA+K DL Sbjct 61 ILDIGSAPARRMMSEHTYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDDLQ 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 +VM+TPD E+ + C+HTD TCR VAVYQDVYAVHAPTS+Y QA+KGVRT YWIGFDT Sbjct 121 SVMATPDNESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFM+ MAGAYPTY TNWADE VL+ARNIGLCS+ L E GK+SIMRKKK+ P+++++ Sbjct 181 TPFMFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPSDQIM 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKG+ S+T RC+TIVSCEGYVVKKIT+SPG++GK Sbjct 241 FSVGSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGVFGKT 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H EGFL CK TDT+ GERVSFP+CTYVP+T+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 SGYAVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+V+QAFS+WA+EY D EDEK++G+RER+L C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNMGMRERTLTCCCL 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAFKTHK ++YKKP TQT KVP+ FNSFV+P L S GL I +R RI++LL+ ++ P Sbjct 421 WAFKTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGLSIGIRHRIRLLLQSRRV-EP 479 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPE--VERETVEADIDLIMQEAGA 533 ++ DV + + EA EAE AALPPL+P V + E D++ + AGA Sbjct 480 LVPSMDVGEARAAEREAAEAKEAEDTLAALPPLIPTAPVLDDIPEVDVEELEFRAGA 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 2 to 534 Score:716 bits(1848), Expect:0.0, Method:Compositional matrix adjust., Identities:351/534(66%), Positives:420/534(78%), Gaps:4/534(0%) Query 3 KVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL 62 KV VD++ADSP++K+LQK FP FE+E+ QVT NDHANARAFSHLATKLIE EV IL Sbjct 2 KVTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTIL 61 Query 63 DIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSD--VTDRFIASKAADLLTV 120 D+GSAP R S H YHCICPM SAEDP+RL YA KL K+ V D+ ++ K DL V Sbjct 62 DVGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDV 121 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD+E+P+ C+HTD TCR VAVYQDVYAVHAPTS+YHQA+KGVRT YWIGFDTTP Sbjct 122 MATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTP 181 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FM++ +AGAYP Y+TNWADE VL+ARNIGLC++ L E R GK+SIMRKK L+P+++V+FS Sbjct 182 FMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFS 241 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGST+YTE R LLRSWHLP+VFHLKGK SFT RC+T+VSCEGYVVKKITISPGIYGK + Sbjct 242 VGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVD 301 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CK+TDT+RGERVSFPVCTYVPAT+CDQMTGILATDV+ +DAQKLLVGL Sbjct 302 YAVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGL 361 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFS+WARE AD+EDEK LG RER+L C WA Sbjct 362 NQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWA 421 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FK+HKI ++YK+P TQT KVP+ F+SFV+P L S L + +R+RIK+LL + + Sbjct 422 FKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQG-LP 480 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLP-EVERETVEADIDLIMQEAGA 533 D + +EE + V EAE RAALPPL+ + + D++ + AGA Sbjct 481 YSGDRTEARAAEEEEKEVQEAELTRAALPPLVSGSCADDIAQVDVEELTFRAGA 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 2 to 534 Score:716 bits(1847), Expect:0.0, Method:Compositional matrix adjust., Identities:350/534(66%), Positives:419/534(78%), Gaps:4/534(0%) Query 3 KVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL 62 KV VD++ADSP++K+LQK FP FE+E+ QVT NDHANARAFSHLATKLIE EV IL Sbjct 2 KVTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPTGVTIL 61 Query 63 DIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSD--VTDRFIASKAADLLTV 120 D+GSAP R S H YHCICPM SAEDP+RL YA KL K+ V D+ ++ K DL V Sbjct 62 DVGSAPARRLMSDHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQDV 121 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD+E+P+ C+HTD TCR VAVYQDVYAVHAPTS+YHQA+KGVRT YWIGFDTTP Sbjct 122 MATPDLESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGFDTTP 181 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FM++ +AGAYP Y+TNWADE VL+ARNIGLC++ L E R GK+SIMRKK L+P+++V+FS Sbjct 182 FMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDRVMFS 241 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VGST+YTE R LLRSWHLP+VFHLKGK SFT RC+T+VSCEGYVVKKITISPGIYGK + Sbjct 242 VGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYGKTVD 301 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CK+TDT+RGERVSFPVCTYVPAT+CDQMTGILATDV+ +DAQKLLVGL Sbjct 302 YAVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGL 361 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFS+WARE AD+EDEK LG RER+L C WA Sbjct 362 NQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPLGTRERTLTCCCLWA 421 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPII 480 FK+HKI ++YK+P TQT KVP+ F+SFV+P L S L + +R+RIK+LL + + Sbjct 422 FKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLSARMAQG-LP 480 Query 481 TEADVAHLKGMQEEAEVVAEAEAIRAALPPLLP-EVERETVEADIDLIMQEAGA 533 D + +EE + EAE RAALPPL+ + + D++ + AGA Sbjct 481 YSGDRTEARAAEEEEKEAQEAELTRAALPPLVSGSCADDIAQVDVEELTFRAGA 534 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1 to 535 Score:714 bits(1843), Expect:0.0, Method:Compositional matrix adjust., Identities:340/535(64%), Positives:410/535(76%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 M+ V+VD+DADS ++K+LQ+ +P FE+E QVT NDHANARAFSHLA KLIE E+DPD Sbjct 1 MDSVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDST 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIG AP R S KYHC+CPM SAEDP+RL YA KL + VTD+ I+ K DL Sbjct 61 ILDIGPAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQ 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ P++ET + C+HTD+TC+ G VA+YQDVYAVHAPTS+YHQA+KGVR YWIGFDT Sbjct 121 AVMAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFMY MAGAYP+Y+TNWADE VL+A+NIGLCS+DL E R GK+SIMR KKL+P ++V+ Sbjct 181 TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKGK SFT RC+TIVSCEGYVVK++T+SPGIYGK Sbjct 241 FSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKT 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H +GFL CK TDT+ GERVSF VCTYVPAT+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 SGYAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLPIVAQAFS+WA+E D+EDEK LGVRER+L C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCL 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HK ++YK+P TQ+ +KVPA F+SFV+P L S GL I LR RIK LL + K Sbjct 421 WAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQ 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 + + + +A EAE R A+PPL + VE D++ + AGA Sbjct 481 LPHSGNAEEAAQAEMDAAEEREAELTREAMPPLQATQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1 to 535 Score:714 bits(1842), Expect:0.0, Method:Compositional matrix adjust., Identities:341/535(64%), Positives:410/535(76%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 M+ V+VD+DADS ++K+LQ+ +P FE+E QVT NDHANARAFSHLA KLIE E+DPD Sbjct 1 MDSVYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDST 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R S KYHC+CPM SAEDP+RL YA KL + VTD+ I+ K DL Sbjct 61 ILDIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQ 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ P++ET + C+HTD+TC+ G VA+YQDVYAVHAPTS+YHQA+KGVR YWIGFDT Sbjct 121 AVMAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFMY MAGAYP+Y+TNWADE VL+A+NIGLCS+DL E R GK+SIMR KKL+P ++V+ Sbjct 181 TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCDRVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKGK SFT RC+TIVSCEGYVVK++T+SPGIYGK Sbjct 241 FSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKT 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H GFL CK TDT+ GERVSF VCTYVPAT+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 SGYAVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLPIVAQAFS+WA+E D+EDEK LGVRER+L C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCL 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HK ++YK+P TQ+ +KVPA F+SFV+P L S GL I LR RIK LL + K Sbjct 421 WAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKYEQ 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 + + + +A EAE R A+PPL + VE D++ + AGA Sbjct 481 LPHSGNAEEAAQAETDAVEEQEAELTREAMPPLQATQDDIQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1 to 535 Score:706 bits(1823), Expect:0.0, Method:Compositional matrix adjust., Identities:337/535(63%), Positives:407/535(76%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 M+ V+VD+DADS ++K+LQ+ +P FE+E QVT NDHANARAFSHLA KLIE E+DP Sbjct 1 MDSVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGST 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 IL IGSAP R S KYHC+CPM SAEDP+RL YA KL + VTD+ I+ K DL Sbjct 61 ILGIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDLQ 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ P++ET + C+HTD+TC+ G VA+YQDVYAVHAPTS+YHQA+KGV YWIGFDT Sbjct 121 AVMAVPNMETSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFMY MAGAYP+Y+TNWADE VL+A+NIGLCS+DL E R GK+SIMR KK +P ++V+ Sbjct 181 TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCDRVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKGK SFT RC+TIVSCEGYVVK++T+SPGIYGK Sbjct 241 FSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIYGKT 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H +GFL CK TDT+ GERVSF VCTYVPAT+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 SGYAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLPIVAQAFS+WA+E D+EDEK LGVRER+L C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCL 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAF+ HK ++YK+P TQ+ +KVPA F+SFV+P L S GL I LR RIK LL + K Sbjct 421 WAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSKAPKHEQ 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 + + + +A EAE R A+PPL + VE D++ + AGA Sbjct 481 LPHSGNAEEAAQAETDAVEEREAELTREAMPPLQATQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1 to 535 Score:705 bits(1820), Expect:0.0, Method:Compositional matrix adjust., Identities:345/535(64%), Positives:410/535(76%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 M+ V+VD+DADS ++K+LQ+ +P FE+E QVT NDHANARAFSHLA KLIE E+DPD Sbjct 1 MDPVYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDST 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R S KYHC+CPM SAEDP+RL YA KL + V DR I+ K DL Sbjct 61 ILDIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQ 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ PD ETP+ C+HTD +CR VA+YQDVYAVHAPTS+YHQA+KGVR YWIGFDT Sbjct 121 AVMAVPDAETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFMY MAGAYP+Y+TNWADE VL+A+NIGLCS+DL E R GK+SIMR KK++P ++V+ Sbjct 181 TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDRVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKGK SFT RC+T+VSCEGYVVK+ITISPG+YGK Sbjct 241 FSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYGKT 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H +GFL CK TDT+ GERVSF VCTYVPAT+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 TGYAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NYLLP+VAQAFS+WA+E D+EDEK LG+RER+L C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEKLLGIRERTLTCCCL 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAFK K ++YK+P TQ+ +KVPA F+SFVVP L S GL I LR RIK LL + K Sbjct 421 WAFKKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDL 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 I D + ++EAE EAE R ALPPL + VE D++ + AGA Sbjct 481 IPYSGDAKEARDAEKEAEEEREAELTREALPPLQAAQDDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1 to 535 Score:698 bits(1801), Expect:0.0, Method:Compositional matrix adjust., Identities:341/535(64%), Positives:407/535(76%), Gaps:2/535(0%) Query 1 MEKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQV 60 M+ V+VD+DADS ++K+LQ+ +P FE+E QVT NDHANARAFSHLA KLIE E+DPD Sbjct 1 MDPVYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDST 60 Query 61 ILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLL 118 ILDIGSAP R S KYHC+CPM SAEDP+RL YA KL + V DR I+ K DL Sbjct 61 ILDIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQ 120 Query 119 TVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDT 178 VM+ PD ETP+ C+HTD +CR VA+YQDVYAVHAPTS+YHQA+KGVR YW+GFDT Sbjct 121 AVMAVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDT 180 Query 179 TPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVV 238 TPFMY MAGAYP+Y+TNWADE VL+A+NIGLCS+DL E R GK+SIMR KKL+P ++V+ Sbjct 181 TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVL 240 Query 239 FSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKV 298 FSVGST+Y E R LL+SWHLP+VFHLKGK SFT RC+T+VSCEGYVVK+IT+SPG+YGK Sbjct 241 FSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKT 300 Query 299 DNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLV 358 A T H +GFL CK TDT+ GERVSF VCTYVPAT+CDQMTGILAT+V+ +DAQKLLV Sbjct 301 TGYAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV 360 Query 359 GLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCC 418 GLNQRIVVNGRTQRNTNTM NY++P+VAQAFS+WA+E D+EDEK LGVRER+L C Sbjct 361 GLNQRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCL 420 Query 419 WAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAP 478 WAFK K ++YK+P TQ+ +KV A F+SFVVP L S GL I LR RIK LL + K Sbjct 421 WAFKKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDL 480 Query 479 IITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADIDLIMQEAGA 533 D + ++EAE EAE ALPPL E VE D++ + AGA Sbjct 481 TPYSGDAQEARDAEKEAEEEREAELTLEALPPLQAAQEDVQVEIDVEQLEDRAGA 535 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 2 to 533 Score:696 bits(1797), Expect:0.0, Method:Compositional matrix adjust., Identities:347/535(65%), Positives:415/535(77%), Gaps:7/535(1%) Query 3 KVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL 62 KV VD++ADSP++K+LQK FP FE+E+ QVT NDHANARAFSHLATKLIE EV + IL Sbjct 2 KVTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPANITIL 61 Query 63 DIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKS--DVTDRFIASKAADLLTV 120 D+GSAP R S H YHCICPM SAEDP+RL YA KL K+ +V D+ ++ K DL V Sbjct 62 DVGSAPARRLMSDHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQDV 121 Query 121 MSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTP 180 M+TPD+E+P+ C+HTD TCR VAVYQDV HAPTS+YHQA+KGVRT+YWIGFDTTP Sbjct 122 MATPDLESPTFCLHTDETCRTRAEVAVYQDV-XXHAPTSLYHQAMKGVRTVYWIGFDTTP 180 Query 181 FMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFS 240 FM++ +AGAYPTY+TNWADE VL+ARNIGLC++ L E GKISIMRKK+L+P+++ +FS Sbjct 181 FMFEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDRXMFS 240 Query 241 VGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDN 300 VG T+Y E R LL+SWHLP+VFHLKGK SFT RC+TIVSCEGYVVKKIT+SPG YGK Sbjct 241 VGXTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYGKTVG 300 Query 301 LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGL 360 A T H EGFL CKVTDT+RGERVSFPVCTYVPAT+CDQMTGILATDV+ +DAQKLLVGL Sbjct 301 YAVTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQKLLVGL 360 Query 361 NQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWA 420 NQRIVVNGRTQRNTNTM NYLLP+VAQAFS+WARE AD+EDEK LG RER+L C WA Sbjct 361 NQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPLGTRERTLTCCCLWA 420 Query 421 FKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEK-KKPAPI 479 FK HK ++YK+P TQT KVP+ F+SFV+P L S L I +R+RIK+LL K + P Sbjct 421 FKNHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQRIKLLLGPKLSRDLPY 480 Query 480 ITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETV-EADIDLIMQEAGA 533 D + ++EAE EAE R ALPPL+ + V + D++ + AGA Sbjct 481 --SGDRNEAREAEKEAEETKEAELTREALPPLVGSNCADDVDQVDVEELTYRAGA 533 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1 to 544 Score:668 bits(1723), Expect:0.0, Method:Compositional matrix adjust., Identities:327/545(60%), Positives:403/545(73%), Gaps:16/545(2%) Query 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 MEK V+VD+D SP+V LQK FP FE+ A QVT NDHANARAFSHLA+KLIE EV Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTT 60 Query 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 Query 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 Query 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 V FSVGST+Y E R L+SWHLP+VFHL GK S+T RC+T+VSCEGYVVKKITISPGI G Sbjct 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 Query 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 300 ETVGYAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 Query 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 LVGLNQRIV+NGRT RNTNTM NYLLPI+AQ FS+WA+E DL++EK LG RER L G Sbjct 360 LVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLTYG 419 Query 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKP 476 C WAF+T K+ S Y+ PGTQT KVPA F++F + + + L + LR+++K+ L+ KK+ Sbjct 420 CLWAFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQKLKLALQPKKEE 479 Query 477 API-ITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPE----------VERETVEADID 525 + ++E V K E+A+ A AE +R ALPPL+ + E E ++ADI Sbjct 480 KLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVADKGIEAAAEVVCEVEGLQADIG 539 Query 526 LIMQE 530 + E Sbjct 540 AALVE 544 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1 to 544 Score:664 bits(1714), Expect:0.0, Method:Compositional matrix adjust., Identities:325/545(60%), Positives:402/545(73%), Gaps:16/545(2%) Query 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 MEK V+VD+D SP+V LQK FP FE+ A Q T NDHANARAFSHLA+KLIE EV Sbjct 1 MEKPVVNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTT 60 Query 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 ILDIGSAP R S+H+YHC+CPM S EDPDR+ +YA KL + +T++ + K D Sbjct 61 ATILDIGSAPARRMFSEHQYHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKD 120 Query 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 L TV+ TPD ETPSLC H D TC +V QDVY ++AP +IYHQA+KGVRT+YWIGF Sbjct 121 LRTVLDTPDAETPSLCFHNDVTCNTRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 Query 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 DTT FM+ MAG+YP YNTNWADE VLEARNIGLCS+ L E R GK+SIMRKK+L+P ++ Sbjct 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 Query 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 V FSVGST+Y E R L+SWHLP+VFHLKGK S+T RC+T+VSCEGYVVKKITISPGI G Sbjct 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 Query 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 + A T + EGFL CKVTDT++GERVSFPVCTY+PAT+CDQMTGI+ATD+S DDAQKL Sbjct 300 ETVGYAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQKL 359 Query 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 LVGLNQRIV+NG+T RNTNTM NYLLP +AQ FS+WA+E DL++EK LG RER L G Sbjct 360 LVGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLTYG 419 Query 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKP 476 C WAF+T K+ S Y+ PGTQT+ KVPA F++F + + + L + LR+++K+ L+ KK+ Sbjct 420 CLWAFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMSLRQKMKLALQPKKEE 479 Query 477 API-ITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPE----------VERETVEADID 525 + + E V K E+A+ A AE +R ALPPL+ + E E ++ADI Sbjct 480 KLLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVADKDIEAAAEVVCEVEGLQADIG 539 Query 526 LIMQE 530 + E Sbjct 540 AALVE 544 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 6 to 518 Score:654 bits(1686), Expect:0.0, Method:Compositional matrix adjust., Identities:316/516(61%), Positives:390/516(75%), Gaps:5/516(0%) Query 4 VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVILD 63 V +D++ +S + K +Q CFP FEIEA Q T NDHA+ARAFSHLATKLIE E DQ+ILD Sbjct 6 VKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKDQIILD 65 Query 64 IGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLTVMST 123 IGSAP R +S+HKYHC+CPM EDP+R+ YA KL + A K DL V++T Sbjct 66 IGSAPARRLYSEHKYHCVCPMKCTEDPERMLGYARKLIAGSAKGK--AEKLRDLRDVLAT 123 Query 124 PDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTPFMY 183 PD+ET SLC+HTD++CRY G VAVYQDVYA+ APT++YHQALKGVRT YWIGFDTTPFMY Sbjct 124 PDIETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAYWIGFDTTPFMY 183 Query 184 KNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKVVFSVGS 243 +AGAYP Y+TNWADE VLE+RNIGLCS + E SI+RKK L+ +++V+FSVGS Sbjct 184 DALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLKQSDRVMFSVGS 243 Query 244 TIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYGKVDNLAS 303 T+YTE R LL+SWHLP+ FHLKGK+SFT RC+TIVSCEGYV+KKIT+ PG+ GK A Sbjct 244 TLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCPGVTGKPIGYAV 303 Query 304 TMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGLNQR 363 T H+EGF+ KVTDT+RGERVSF VCTYVP TLCDQMTGILAT+V+ DDAQKLLVGLNQR Sbjct 304 THHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTADDAQKLLVGLNQR 363 Query 364 IVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWAFKT 423 IVVNGRTQRNTNTM NYLLP+VAQA ++WA+E D+EDE+ L R+R+L CCWAFK Sbjct 364 IVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQRTLTCLCCWAFKR 423 Query 424 HKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPI--IT 481 +K +IYK+P TQ+ KVP F SF + L S G+ I LR+++KM+L + ++P I +T Sbjct 424 NKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSISLRQKLKMML-QARQPTQIAAVT 482 Query 482 EADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVER 517 E + +++EA A AE AA P ++ ER Sbjct 483 EELIQEAAAVEQEAVDTANAELDHAAWPSIVDTTER 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1 to 539 Score:638 bits(1646), Expect:0.0, Method:Compositional matrix adjust., Identities:321/540(59%), Positives:394/540(72%), Gaps:8/540(1%) Query 1 MEK--VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPD 58 MEK VHVD+D SP+V LQK FP FEI A QVT NDHANARAFSHLA+KLIE E+ Sbjct 1 MEKPTVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPTS 60 Query 59 QVILDIGSAPVRHTHSKHKYHCICPMISAEDPDRLHRYADKL--RKSDVTDRFIASKAAD 116 ILDIGSAP R +S+HKYHC+CPM S EDPDRL YA +L + ++T++ + K AD Sbjct 61 VTILDIGSAPARRMYSEHKYHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLAD 120 Query 117 LLTVMSTPDVETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 L +V+ +PD ET ++C H D CR V+V Q+VY ++AP++IYHQALKGVR +YWIGF Sbjct 121 LKSVLESPDAETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIGF 179 Query 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 DTT FM+ +MAG+YP+YNTNWADE VLEARNIGLCS+ L E GK+S RKK L+P Sbjct 180 DTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGTN 239 Query 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 V FSVGST+Y E R L+SWHLP+VFHLKGK SFT RC+T V+CEGYVVKKITISPGI G Sbjct 240 VYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGITG 299 Query 297 KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQKL 356 +V+ T + EGFL CK+TDT++GERVSFPVCTY+P ++CDQMTGILATD+ +DAQKL Sbjct 300 RVNRYTVTNNSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDAQKL 359 Query 357 LVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDLGVRERSLVMG 416 LVGLNQRIVVNG+T RNTNTM NYLLP VA S+WA+E AD DEK L VRER L G Sbjct 360 LVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKLAFG 419 Query 417 CCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEK-KK 475 C WAFKT KI S Y+ PGTQT KV A F++F + + + L + LR+++K+LL +K K Sbjct 420 CLWAFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVKKTNK 479 Query 476 PAPIITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVE--RETVEADIDLIMQEAGA 533 P IT+ V + + EA AEAE ALPPL P E V+ ++ ++ +AGA Sbjct 480 PVVTITDTAVKNAQEAYNEAVETAEAEEKAKALPPLKPTAPPVAEDVKCEVTDLVDDAGA 539 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 15 to 547 Score:411 bits(1057), Expect:1e-126, Method:Compositional matrix adjust., Identities:231/533(43%), Positives:319/533(59%), Gaps:11/533(2%) Query 4 VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL- 62 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 Query 63 DIGSAPVRHTHSKHK--YHCICPMISAEDPDRLHRYADKL-RKSDVTD-RFIASKAADLL 118 DIGSAP R + YH +CP AEDP+RL YA KL R + D ++ + DL Sbjct 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 Query 119 TVMSTPD--VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 V+ PD +ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 + F MAG++P Y+ NW+D +VL A+N+ LC S L E R K L P+ + Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 297 KVDN--LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 Query 355 KLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDL-GVRERSL 413 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E D+EDE+D+ GV + Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 Query 414 VMGCCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEK 473 + C A+ + + Y++P + VPA F + L++ L++ L++ + L+ Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 Query 474 KKPA-PIITEADVAHLKGMQEEAEVVAEAEAIRAALPPLLPEVERETVEADID 525 KP + + A E E+ E +AA P + +V + E ++D Sbjct 495 IKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVD 547 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 15 to 476 Score:407 bits(1046), Expect:4e-125, Method:Compositional matrix adjust., Identities:215/462(47%), Positives:287/462(62%), Gaps:10/462(2%) Query 4 VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL- 62 V V+L AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++ QVI+ Sbjct 15 VTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIVA 74 Query 63 DIGSAPVRHTHSKHK--YHCICPMISAEDPDRLHRYADKL-RKSDVTD-RFIASKAADLL 118 DIGSAP R + YH +CP AEDP+RL YA KL R + D + K DL Sbjct 75 DIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVERGDGHLVNEKITDLK 134 Query 119 TVMSTPD--VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 V+ PD +ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 Query 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 + F MAG++P Y+ NW+D +VL A+N+ LC S L E R K L P+ + Sbjct 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 Query 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKITI GI G Sbjct 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 Query 297 --KVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 + LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V DA Sbjct 315 IPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTANPVKYSDAV 374 Query 355 KLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDL-GVRERSL 413 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E D+EDE+DL G+ + Sbjct 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDMEDEQDLYGITSVTT 434 Query 414 VMGCCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTS 455 + C A+ + + Y++P + VPA F + L++ Sbjct 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRAALSA 476 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 181 to 259 Score:43.9 bits(102), Expect:0.004, Method:Compositional matrix adjust., Identities:26/79(33%), Positives:37/79(46%), Gaps:1/79(1%) Query 15 VKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVILDIGSAPVRH-TH 73 ++ L+ FP +E++ TQ D H A A L T + S D ILDIG H + Sbjct 181 MRILRDHFPRYELKFTQNVDGPHNMAAAHRLLETHDLLSNFPADAPILDIGGNWFSHFRY 240 Query 74 SKHKYHCICPMISAEDPDR 92 + H CPM+ D +R Sbjct 241 GRSNVHSCCPMLDLRDNER 259 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 55 to 169 Score:37.7 bits(86), Expect:0.33, Method:Compositional matrix adjust., Identities:32/117(27%), Positives:49/117(41%), Gaps:7/117(5%) Query 4 VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVILD 63 + V + + ++ L + FP + + V H+ A A + T +I + + VI D Sbjct 55 IDVKRNLNEDQIQLLAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFTSFPKNGVIYD 114 Query 64 IGSAPVRHTHSKHK----YHCICPMISAEDPDR-LHRYADKLRKSDVTDRFIASKAA 115 IG TH+K HC CP++ D R + R D R D A KAA Sbjct 115 IGGNWA--THAKRDDGGFVHCCCPILDFRDAQRKMTRLIDFNRFIDDAKVVSAEKAA 169 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 57 to 138 Score:37.0 bits(84), Expect:0.54, Method:Compositional matrix adjust., Identities:23/82(28%), Positives:35/82(42%), Gaps:1/82(1%) Query 16 KSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVILDIGSAPVRHTHSK 75 ++++ +P F+IE T ++ HA A L + + + V V DIG H Sbjct 57 RTVRGGYPEFQIEFTGASNTSHAMAAGLRGLELEYLYTLVPYGAVSYDIGGNFPAHMMKG 116 Query 76 HKY-HCICPMISAEDPDRLHRY 96 Y HC P + A D R Y Sbjct 117 RSYVHCCNPALDARDLARNENY 138 >RecName: Full=Replication protein alpha-A; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=NTPase/helicase [Barley stripe mosaic virus] Sequence ID: P17595.1 Length: 1139 Range 1: 65 to 149 Score:36.6 bits(83), Expect:0.62, Method:Compositional matrix adjust., Identities:21/85(25%), Positives:38/85(44%), Gaps:3/85(3%) Query 12 SPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVD-PDQVILDIGSAPVR 70 S ++ L +P + + ++ H+ A F L T+ + V + + DIG Sbjct 65 SEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVYDIGGNWFS 124 Query 71 HT--HSKHKYHCICPMISAEDPDRL 93 H + + HC CP++S D +RL Sbjct 125 HMKFRADREIHCCCPILSMRDSERL 149 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Broad bean mottle virus] Sequence ID: Q00020.1 Length: 966 Range 1: 100 to 281 Score:36.2 bits(82), Expect:0.81, Method:Compositional matrix adjust., Identities:48/215(22%), Positives:78/215(36%), Gaps:50/215(23%) Query 57 PDQVILDIGSAPVRH-THSKHKYHCICPMISAEDPDRLHRYADKLRKS-DVTDRFIASKA 114 P+ I+D G + + H + + H CP++ D R +LRK +DRF Sbjct 100 PEDKIIDFGGSWLHHYSRGDSRVHSCCPILGPRDATRHEERMCRLRKMVQTSDRF----- 154 Query 115 ADLLTVMSTPDVETPSLCMHTDSTCRYHGTVAV---------YQDV-YAVHAPTSIYHQA 164 V+ P C++ C A+ +Q + A+HAP + Sbjct 155 -----------VDVPDFCLNKAEDCNVQADWAICIHGGYDMGFQGLCKAMHAP--LERGI 201 Query 165 LKGVRTIYWIGFDTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKIS 224 L+G I FD M + G P W + +G S + + F S Sbjct 202 LQGT-----IMFDGA--MLFDRQGELPLLQCRW--------QRVGTGSKEQIKFDFINES 246 Query 225 IMR-----KKKLQPTNKVVFSVGSTIYTEERILLR 254 + K + +S+G T Y ER+LL+ Sbjct 247 TLSYVHDWKNLGSFLTESTYSIGGTTYLLERMLLK 281 >RecName: Full=Replicase large subunit; AltName: Full=209 kDa readthrough protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=150 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Soil-borne wheat mosaic virus strain Nebraska] Sequence ID: Q89249.1 Length: 1828 Range 1: 56 to 148 Score:36.2 bits(82), Expect:0.82, Method:Compositional matrix adjust., Identities:23/93(25%), Positives:37/93(39%), Gaps:2/93(2%) Query 2 EKVHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVI 61 +K+ V D ++ L +P I ++ H+ A A + T L+ S + + Sbjct 56 KKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDLLLSRIPKRSWV 115 Query 62 LDIGSAPVRHT--HSKHKYHCICPMISAEDPDR 92 DIG H + K HC CP + D R Sbjct 116 YDIGGNWATHVKRNDGRKVHCCCPTVDIRDSAR 148 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT3.1 Length: 962 Range 1: 80 to 135 Score:35.4 bits(80), Expect:1.4, Method:Compositional matrix adjust., Identities:18/56(32%), Positives:25/56(44%), Gaps:0/56(0%) Query 37 HANARAFSHLATKLIESEVDPDQVILDIGSAPVRHTHSKHKYHCICPMISAEDPDR 92 H+ A A T S D +ILD G + + H +H H CP++ A D R Sbjct 80 HSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNVHSCCPVLDARDMAR 135 >RecName: Full=Protein SFI1 homolog; Short=hSFI1 [Homo sapiens] Sequence ID: A8K8P3.2 Length: 1242 Range 1: 481 to 558 Score:34.3 bits(77), Expect:3.3, Method:Compositional matrix adjust., Identities:22/81(27%), Positives:37/81(45%), Gaps:6/81(7%) Query 181 FMYKNMAGAYPTYNTNWA---DESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNKV 237 F + + A+ T+N W E+VL AR L +Q F S+ R+K Q Sbjct 481 FQQRALPAAFHTWNRLWRWRHQENVLSARATRFHRETLEKQVF---SLWRQKMFQHRENR 537 Query 238 VFSVGSTIYTEERILLRSWHL 258 + + ++ E ++L RSW + Sbjct 538 LAERMAILHAERQLLYRSWFM 558 >RecName: Full=LPS-assembly protein LptD; Flags: Precursor [Pseudoalteromonas translucida TAC125] Sequence ID: Q3IFD4.2 Length: 748 Range 1: 660 to 735 Score:34.3 bits(77), Expect:3.4, Method:Compositional matrix adjust., Identities:24/81(30%), Positives:37/81(45%), Gaps:9/81(11%) Query 396 YHADLEDEKDLGVRERSLVMGCCWAFKT--HK--ITSIYKKPGTQTTKKVPAVFNSFVVP 451 YH DLE+ + + V CCWAF+ H+ +T + + G Q A F+S + Sbjct 660 YHRDLENNRSIEVLSGLQYESCCWAFQITGHRQIVTDLNQSIGQQ-----QATFDSSIRL 714 Query 452 QLTSYGLDIELRRRIKMLLEE 472 GL + R K LL++ Sbjct 715 NFVLKGLGSKSRYDAKKLLQQ 735 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Alfamovirus AMV] Sequence ID: P03589.1 Length: 1126 Range 1: 124 to 246 Score:34.3 bits(77), Expect:3.7, Method:Compositional matrix adjust., Identities:37/145(26%), Positives:53/145(36%), Gaps:30/145(20%) Query 61 ILDIGSAPVRHTHSK-HKYHCICPMISAEDPDRLHRYADKLRKSDVTDRFIASKAADLLT 119 I+D+G V H K H HC CP++ A D RL T+R ++ K+ Sbjct 124 IIDLGGNFVSHMKVKRHNVHCCCPILDARDGARL------------TERILSLKS----Y 167 Query 120 VMSTPD-VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQAL------KGVRTIY 172 V P+ V CM T C A +A+H+ + + L KGV Sbjct 168 VRKHPEIVGEADYCMDTFQKCSRRADYA-----FAIHSTSDLDVGELACSLDQKGVMKFI 222 Query 173 WIGFDTTPFMYKNMAGAYPTYNTNW 197 + N G P +N W Sbjct 223 CTMMVDADMLIHN-EGEIPNFNVRW 246 >RecName: Full=Tubulin gamma-1 chain; AltName: Full=Gamma-1-tubulin [Zea mays] Sequence ID: Q41807.1 Length: 469 Range 1: 265 to 436 Score:33.1 bits(74), Expect:7.1, Method:Compositional matrix adjust., Identities:42/180(23%), Positives:72/180(40%), Gaps:10/180(5%) Query 323 RVSFPVCTYVPATLCDQMTGILATDVSVDDAQKLLVGLNQRIVVNGRTQRNTNTMPNYLL 382 R F + Y P T+ Q+ I T V +D ++LL N + RT+ + +L Sbjct 265 RCHFLMTGYTPLTVERQVNMIRKTTV-LDVMRRLLQTKNIMVSSYARTKEASQAKYISIL 323 Query 383 PIVAQAFSRWAREYHADLEDEKDLGVRERSLVMGCCWAFKTHKITSIYKKPGTQTTKKVP 442 I+ + H L+ +RER LV WA + ++ K P QTT +V Sbjct 324 NIIQGEVD--PTQVHESLQR-----IRERKLVNFIYWAPASIQVALSRKSPYVQTTHRVS 376 Query 443 AVF--NSFVVPQLTSYGLDIELRRRIKMLLEEKKKPAPIITEADVAHLKGMQEEAEVVAE 500 + N + L S L + R K + + P+ + D++ +E E + + Sbjct 377 GLMLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVD 436 >RecName: Full=Tubulin gamma-3 chain; AltName: Full=Gamma-3-tubulin [Zea mays] Sequence ID: Q41874.1 Length: 421 Range 1: 167 to 388 Score:32.7 bits(73), Expect:8.7, Method:Compositional matrix adjust., Identities:49/230(21%), Positives:92/230(40%), Gaps:22/230(9%) Query 285 VKKITISPGIYGKVDNLAST--------MHREGFLSCKVTDTLRG----ERVSFPVCTYV 332 V+++ +S + + ++L ST + G+++ + L R F + Y Sbjct 167 VERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYT 226 Query 333 PATLCDQMTGILATDVSVDDAQKLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRW 392 P T+ Q+ I T V +D ++LL N + RT+ + +L I+ Sbjct 227 PLTVERQVNMIRKTTV-LDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVD-- 283 Query 393 AREYHADLEDEKDLGVRERSLVMGCCWAFKTHKITSIYKKPGTQTTKKVPAVF--NSFVV 450 + H L+ +RER LV WA + ++ K P QTT +V + N + Sbjct 284 PTQVHESLQR-----IRERKLVNFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHTSI 338 Query 451 PQLTSYGLDIELRRRIKMLLEEKKKPAPIITEADVAHLKGMQEEAEVVAE 500 L S L + R K + + P+ + D++ +E E + + Sbjct 339 RHLFSKCLGQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIIESLVD 388 >RecName: Full=Hyaluronidase-2; Short=Hyal-2; AltName: Full=Hyaluronoglucosaminidase-2; AltName: Full=Lung carcinoma protein 2; Short=LuCa-2; Flags: Precursor [Homo sapiens] Sequence ID: Q12891.4 Length: 473 Range 1: 216 to 310 Score:32.7 bits(73), Expect:9.7, Method:Compositional matrix adjust., Identities:23/96(24%), Positives:42/96(43%), Gaps:11/96(11%) Query 263 HLKGKTSFTGRCNTIVSCEG-----YVVKKITISPGIYGKVDNLASTMHREGFLSCKVTD 317 +++ S+TGRC + + + P +Y + LAS+ H F+S +V + Sbjct 216 YVQNWESYTGRCPDVEVARNDQLAWLWAESTALFPSVYLD-ETLASSRHGRNFVSFRVQE 274 Query 318 TLRGERV-----SFPVCTYVPATLCDQMTGILATDV 348 LR R + PV + T ++TG+ D+ Sbjct 275 ALRVARTHHANHALPVYVFTRPTYSRRLTGLSEMDL 310 >RecName: Full=Lysophospholipase nte1; AltName: Full=Intracellular phospholipase B; AltName: Full=Neuropathy target esterase homolog [Aspergillus clavatus NRRL 1] Sequence ID: A1C9L6.2 Length: 1528 Range 1: 953 to 1066 Score:32.7 bits(73), Expect:9.9, Method:Compositional matrix adjust., Identities:37/119(31%), Positives:55/119(46%), Gaps:12/119(10%) Query 292 PGIYGKVDNLASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSV- 350 PGI +V L + R+ + VT+ ER S +TL + GIL V Sbjct 953 PGITIQVSKLIAQRMRD-LVERPVTEK-GAERSSAGGVQTATSTLNLRTVGILPVTAGVP 1010 Query 351 --DDAQKLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAR----EYHADLEDE 403 + +LL L+Q VVNG T N + + N+L AFS+ + +Y ADLE++ Sbjct 1011 VVEFGNRLLHALHQIGVVNGVTSLNQSAILNHL---GRHAFSKMGKLKLAQYLADLEEK 1066