FastQCFastQC Report
Βρ 21 δεκ 2014
Ath_tae_CTTGTA_L003_R1_009.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R1_009.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC8650.022.4891648-49
TATGCCG9500.020.47543746-47
CGTATGC10850.018.58299844-45
TCGGAAG18200.018.5038533
GAGCACA19550.017.2601819
CACGTCT13950.015.8401114-15
ATGCCGT9750.015.57106446-47
GCCGTCT10150.015.426002548-49
CGTCTGA13400.015.42280116-17
GCACACG10600.015.24427810-11
AGAGCAC21300.015.1727098
AGTCACC14700.014.54576428-29
GATCGGA23500.014.34104251
CACACGT13800.014.29232212-13
GTATGCC11500.013.61359244-45
CGGAAGA25200.013.5521174
ATCGGAA26200.013.396942
AGCACAC16800.013.15459410-11
TGGCCCG3651.1274187E-513.0060745
CCGTCTT16450.012.97802750-51
Produced by FastQC (version 0.11.2)