Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.5.1, (Release date: Sun Jan 29 10:33:12 2023 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE proms.fasta
Database contains 1031 sequences, 51550 residues
MOTIFS meme_out_multi/meme.txt (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
MAGGAGH | 7 | AAGGAGC |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
MAGGAGH | MEME-1 | "cysZ" | + | 33 | 39 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "yaeD" | + | 36 | 42 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2698" | + | 38 | 44 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "yihD" | + | 38 | 44 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "rpsF" | + | 38 | 44 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "pckA" | + | 38 | 44 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF0865" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1804" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1058" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1596" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2994" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1843" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1252" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2051" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1439" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1037" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1428" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1356" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2547" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2620" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "yeiG" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2756" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF2181" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF0881" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "yhiE" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF3749" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF1900" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF3801" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "SF0302" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "yjgA" | + | 39 | 45 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "yidH" | + | 40 | 46 | 5.35e-05 | 0.151 | AAGGAGC |
MAGGAGH | MEME-1 | "hyfA" | + | 40 | 46 | 5.35e-05 | 0.151 | AAGGAGC |
Command line:
fimo --oc fimo_proms_multi meme_out_multi/meme.txt proms.fasta
Settings:
output_directory = fimo_proms_multi | MEME file name = meme_out_multi/meme.txt | sequence file name = proms.fasta |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 2 |
This information can be useful in the event you wish to report a problem with the FIMO software.