******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= control.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ "SF0005" 1.0000 50 "SF0008" 1.0000 50 "dnaK" 1.0000 50 "nhaA" 1.0000 50 "SF0020a" 1.0000 50 "slpA" 1.0000 50 "carA" 1.0000 50 "caiF" 1.0000 50 "fixA" 1.0000 50 "fixC" 1.0000 50 "djlA" 1.0000 50 "araC" 1.0000 50 "yabM" 1.0000 50 "leuO" 1.0000 50 "ilvI" 1.0000 50 "yabB" 1.0000 50 "guaC" 1.0000 50 "ampD" 1.0000 50 "pdhR" 1.0000 50 "lpdA" 1.0000 50 "acnB" 1.0000 50 "yacK" 1.0000 50 "hpt" 1.0000 50 "yadG" 1.0000 50 "yadD" 1.0000 50 "insB" 1.0000 50 "hrpB" 1.0000 50 "fhuA" 1.0000 50 "yadQ" 1.0000 50 "SF0152" 1.0000 50 "htrA" 1.0000 50 "rpsB" 1.0000 50 "tsf" 1.0000 50 "frr" 1.0000 50 "yaeQ" 1.0000 50 "yaeD" 1.0000 50 "rrsH" 1.0000 50 "SF4438" 1.0000 50 "yafD" 1.0000 50 "yafE" 1.0000 50 "yafS" 1.0000 50 "dnaQ" 1.0000 50 "SF0209" 1.0000 50 "SF0215" 1.0000 50 "ddl" 1.0000 50 "SF0234" 1.0000 50 "yaiH" 1.0000 50 "insA" 1.0000 50 "hemB" 1.0000 50 "ykgH" 1.0000 50 "ykfE" 1.0000 50 "gmhA" 1.0000 50 "yafJ" 1.0000 50 "yafL" 1.0000 50 "mbhA" 1.0000 50 "SF0283" 1.0000 50 "gpt" 1.0000 50 "SF0302" 1.0000 50 "gtrAI" 1.0000 50 "SF0309" 1.0000 50 "SF0314" 1.0000 50 "SF0315" 1.0000 50 "adrA" 1.0000 50 "yaiI" 1.0000 50 "aroM" 1.0000 50 "SF0328" 1.0000 50 "yajF" 1.0000 50 "phoB" 1.0000 50 "brnQ" 1.0000 50 "queA" 1.0000 50 "nrdR" 1.0000 50 "SF0360" 1.0000 50 "yajQ" 1.0000 50 "bolA" 1.0000 50 "clpP" 1.0000 50 "hupB" 1.0000 50 "cof" 1.0000 50 "ybaY" 1.0000 50 "ffs" 1.0000 50 "acrR" 1.0000 50 "ybaN" 1.0000 50 "gsk" 1.0000 50 "ushA" 1.0000 50 "ybaQ" 1.0000 50 "ybaS" 1.0000 50 "ybbL" 1.0000 50 "ybbA" 1.0000 50 "ybbT" 1.0000 50 "ylbF" 1.0000 50 "cysS" 1.0000 50 "sfmA" 1.0000 50 "sfmC" 1.0000 50 "SF4444" 1.0000 50 "ylcB" 1.0000 50 "SF0478" 1.0000 50 "ybdE" 1.0000 50 "SF0489" 1.0000 50 "SF0494" 1.0000 50 "fes" 1.0000 50 "entF" 1.0000 50 "fepE" 1.0000 50 "ybdA" 1.0000 50 "entC" 1.0000 50 "ybdL" 1.0000 50 "SF0519" 1.0000 50 "ahpC" 1.0000 50 "ahpF" 1.0000 50 "ybdR" 1.0000 50 "ybhA" 1.0000 50 "modE" 1.0000 50 "galE" 1.0000 50 "gpmA" 1.0000 50 "SF0551" 1.0000 50 "farR" 1.0000 50 "gltA" 1.0000 50 "ybgD" 1.0000 50 "ybgH" 1.0000 50 "SF0591" 1.0000 50 "kdpA" 1.0000 50 "kdpD" 1.0000 50 "speF" 1.0000 50 "ybfF" 1.0000 50 "fur" 1.0000 50 "nagB" 1.0000 50 "asnB" 1.0000 50 "SF4448" 1.0000 50 "yleA" 1.0000 50 "ybeJ" 1.0000 50 "ybeT" 1.0000 50 "ybeQ" 1.0000 50 "leuS" 1.0000 50 "ybeB" 1.0000 50 "ybeF" 1.0000 50 "lipA" 1.0000 50 "ccrB" 1.0000 50 "dcuC" 1.0000 50 "SF0662" 1.0000 50 "SF0676" 1.0000 50 "SF0677" 1.0000 50 "SF0682" 1.0000 50 "SF0684" 1.0000 50 "ybcQ" 1.0000 50 "SF0689" 1.0000 50 "SF0697" 1.0000 50 "SF0701" 1.0000 50 "bioB" 1.0000 50 "uvrB" 1.0000 50 "moaA" 1.0000 50 "ybhM" 1.0000 50 "ybhQ" 1.0000 50 "rhlE" 1.0000 50 "dinG" 1.0000 50 "SF0755" 1.0000 50 "ybiN" 1.0000 50 "ompX" 1.0000 50 "SF0767" 1.0000 50 "ybiT" 1.0000 50 "mipB" 1.0000 50 "ybiK" 1.0000 50 "bssR" 1.0000 50 "SF0789" 1.0000 50 "cmr" 1.0000 50 "SF0799" 1.0000 50 "ybjM" 1.0000 50 "ybjC" 1.0000 50 "mdaA" 1.0000 50 "potF" 1.0000 50 "SF0820" 1.0000 50 "SF0821" 1.0000 50 "ybjD" 1.0000 50 "SF0837" 1.0000 50 "clpS" 1.0000 50 "lrp" 1.0000 50 "dmsA" 1.0000 50 "ycaD" 1.0000 50 "SF0858" 1.0000 50 "SF0865" 1.0000 50 "SF0876" 1.0000 50 "SF0877" 1.0000 50 "SF0880" 1.0000 50 "SF0881" 1.0000 50 "SF0886" 1.0000 50 "ybhE" 1.0000 50 "ybhH" 1.0000 50 "SF0901" 1.0000 50 "smtA" 1.0000 50 "ycbB" 1.0000 50 "SF0925a" 1.0000 50 "pepN" 1.0000 50 "ycbS" 1.0000 50 "rlmL" 1.0000 50 "SF953a" 1.0000 50 "ycbG" 1.0000 50 "SF0959" 1.0000 50 "helD" 1.0000 50 "SF0967" 1.0000 50 "SF0969" 1.0000 50 "hyaA" 1.0000 50 "appC" 1.0000 50 "cspG" 1.0000 50 "torT" 1.0000 50 "torC" 1.0000 50 "yccE" 1.0000 50 "agp" 1.0000 50 "ycdC" 1.0000 50 "SF1019" 1.0000 50 "SF1022" 1.0000 50 "SF1025" 1.0000 50 "ycdW" 1.0000 50 "csgB" 1.0000 50 "SF1037" 1.0000 50 "csgC" 1.0000 50 "mdoG" 1.0000 50 "SF1047" 1.0000 50 "SF1051" 1.0000 50 "SF1054" 1.0000 50 "SF1056" 1.0000 50 "SF1058" 1.0000 50 "yceA" 1.0000 50 "rimJ" 1.0000 50 "flgB" 1.0000 50 "SF1089" 1.0000 50 "yceD" 1.0000 50 "acpP" 1.0000 50 "ptsG" 1.0000 50 "ycfF" 1.0000 50 "ndh" 1.0000 50 "ycfJ" 1.0000 50 "ycfR" 1.0000 50 "ycfU" 1.0000 50 "pepT" 1.0000 50 "SF1131" 1.0000 50 "SF1133a" 1.0000 50 "SF1136" 1.0000 50 "SF1137" 1.0000 50 "SF1138" 1.0000 50 "icdA" 1.0000 50 "SF1156" 1.0000 50 "SF1156b" 1.0000 50 "SF1160" 1.0000 50 "SF1166" 1.0000 50 "ycgL" 1.0000 50 "umuD" 1.0000 50 "fadR" 1.0000 50 "dadA" 1.0000 50 "mltE" 1.0000 50 "SF1185" 1.0000 50 "ymgE" 1.0000 50 "SF1195" 1.0000 50 "SF1198" 1.0000 50 "SF1204" 1.0000 50 "SF1205a" 1.0000 50 "ychH" 1.0000 50 "hemA" 1.0000 50 "chaB" 1.0000 50 "ychP" 1.0000 50 "narK" 1.0000 50 "narG" 1.0000 50 "ychK" 1.0000 50 "galU" 1.0000 50 "tdk" 1.0000 50 "ychE" 1.0000 50 "oppA" 1.0000 50 "SF1252" 1.0000 50 "tonB" 1.0000 50 "yciD" 1.0000 50 "yciV" 1.0000 50 "sohB" 1.0000 50 "topA" 1.0000 50 "cysB" 1.0000 50 "SF1278" 1.0000 50 "acnA" 1.0000 50 "pgpB" 1.0000 50 "puuD" 1.0000 50 "pspA" 1.0000 50 "SF1316" 1.0000 50 "ycjX" 1.0000 50 "ycjG" 1.0000 50 "SF1335" 1.0000 50 "ycjZ" 1.0000 50 "SF1344" 1.0000 50 "SF1350a" 1.0000 50 "SF1350b" 1.0000 50 "SF1353" 1.0000 50 "SF1356" 1.0000 50 "SF1359" 1.0000 50 "SF1374" 1.0000 50 "SF1382" 1.0000 50 "pphA" 1.0000 50 "SF1393" 1.0000 50 "SF1398" 1.0000 50 "SF1400" 1.0000 50 "SF1402" 1.0000 50 "yoaE" 1.0000 50 "SF1417" 1.0000 50 "SF1420" 1.0000 50 "SF1428" 1.0000 50 "yoaF" 1.0000 50 "yeaM" 1.0000 50 "SF1436" 1.0000 50 "SF1439" 1.0000 50 "yeaF" 1.0000 50 "yeaA" 1.0000 50 "SF1447" 1.0000 50 "ydjA" 1.0000 50 "SF1463" 1.0000 50 "SF1465" 1.0000 50 "SF1467" 1.0000 50 "SF1471" 1.0000 50 "cstC" 1.0000 50 "spy" 1.0000 50 "SF1484" 1.0000 50 "osmE" 1.0000 50 "celA" 1.0000 50 "celF" 1.0000 50 "SF1497" 1.0000 50 "ydjO" 1.0000 50 "SF1504" 1.0000 50 "SF1508" 1.0000 50 "thrS" 1.0000 50 "pheS" 1.0000 50 "SF1524" 1.0000 50 "ppsA" 1.0000 50 "SF1534" 1.0000 50 "ycgW" 1.0000 50 "SF1552" 1.0000 50 "dcp" 1.0000 50 "SF1559" 1.0000 50 "ydeD" 1.0000 50 "ydeB" 1.0000 50 "SF1568" 1.0000 50 "SF1571" 1.0000 50 "uxaB" 1.0000 50 "SF1575" 1.0000 50 "SF1583" 1.0000 50 "SF1593" 1.0000 50 "SF1596" 1.0000 50 "SF1607" 1.0000 50 "ynfM" 1.0000 50 "asr" 1.0000 50 "SF1619" 1.0000 50 "tqsA" 1.0000 50 "SF1625" 1.0000 50 "rstA" 1.0000 50 "SF1631" 1.0000 50 "manA" 1.0000 50 "malX" 1.0000 50 "SF1649a" 1.0000 50 "SF1650" 1.0000 50 "tppB" 1.0000 50 "slyB" 1.0000 50 "SF1670" 1.0000 50 "SF1676" 1.0000 50 "ydhO" 1.0000 50 "SF1686" 1.0000 50 "ydhC" 1.0000 50 "cfa" 1.0000 50 "ydhE" 1.0000 50 "SF4469" 1.0000 50 "pykF" 1.0000 50 "lpp" 1.0000 50 "SF1709" 1.0000 50 "SF1718" 1.0000 50 "SF1719" 1.0000 50 "SF1721" 1.0000 50 "ydeN" 1.0000 50 "yddA" 1.0000 50 "SF1731" 1.0000 50 "gadB" 1.0000 50 "yddV" 1.0000 50 "SF1739" 1.0000 50 "sfcA" 1.0000 50 "yddG" 1.0000 50 "SF1755" 1.0000 50 "narU" 1.0000 50 "SF1769" 1.0000 50 "SF1777" 1.0000 50 "SF1778a" 1.0000 50 "SF1782" 1.0000 50 "SF1788" 1.0000 50 "SF1790" 1.0000 50 "SF1792a" 1.0000 50 "SF1795" 1.0000 50 "SF1799" 1.0000 50 "acpD" 1.0000 50 "SF1804" 1.0000 50 "ydbH" 1.0000 50 "ydbK" 1.0000 50 "SF1823" 1.0000 50 "SF1828" 1.0000 50 "SF1831" 1.0000 50 "SF1834" 1.0000 50 "SF1834a" 1.0000 50 "SF1840" 1.0000 50 "SF1843" 1.0000 50 "SF1847" 1.0000 50 "SF1849" 1.0000 50 "holE" 1.0000 50 "purT" 1.0000 50 "yebK" 1.0000 50 "znuC" 1.0000 50 "SF1872" 1.0000 50 "yecD" 1.0000 50 "SF1879" 1.0000 50 "ipaH_4" 1.0000 50 "SF1897" 1.0000 50 "SF1900" 1.0000 50 "SF1904" 1.0000 50 "yecE" 1.0000 50 "argS" 1.0000 50 "SF1927" 1.0000 50 "SF1928" 1.0000 50 "yecI" 1.0000 50 "SF1950" 1.0000 50 "tyrP" 1.0000 50 "yecF" 1.0000 50 "fliD" 1.0000 50 "yedE" 1.0000 50 "SF1976" 1.0000 50 "nmpC" 1.0000 50 "fliF" 1.0000 50 "rcsA" 1.0000 50 "SF1998" 1.0000 50 "SF1999" 1.0000 50 "yedA" 1.0000 50 "SF2009" 1.0000 50 "SF2017" 1.0000 50 "SF2020" 1.0000 50 "SF2021" 1.0000 50 "ipaH_5" 1.0000 50 "SF2042a" 1.0000 50 "SF2045" 1.0000 50 "SF2046" 1.0000 50 "SF2051" 1.0000 50 "amn" 1.0000 50 "SF2054" 1.0000 50 "SF4484" 1.0000 50 "SF4485" 1.0000 50 "SF2064" 1.0000 50 "SF2065" 1.0000 50 "SF2066" 1.0000 50 "SF2069" 1.0000 50 "sbcB" 1.0000 50 "hisG" 1.0000 50 "yegH" 1.0000 50 "yegE" 1.0000 50 "yegD" 1.0000 50 "SF2138" 1.0000 50 "SF2149" 1.0000 50 "SF2160" 1.0000 50 "SF2162" 1.0000 50 "yohM" 1.0000 50 "yohN" 1.0000 50 "metG" 1.0000 50 "SF2181" 1.0000 50 "molR_2" 1.0000 50 "yehI" 1.0000 50 "yehL" 1.0000 50 "yehR" 1.0000 50 "SF2199" 1.0000 50 "SF2200" 1.0000 50 "SF2201" 1.0000 50 "ipaH_6" 1.0000 50 "SF2211" 1.0000 50 "dld" 1.0000 50 "yohD" 1.0000 50 "yohJ" 1.0000 50 "yeiG" 1.0000 50 "yeiH" 1.0000 50 "yeiL" 1.0000 50 "yeiO" 1.0000 50 "yeiP" 1.0000 50 "yeiQ" 1.0000 50 "spr" 1.0000 50 "yejH" 1.0000 50 "yejL" 1.0000 50 "narP" 1.0000 50 "eco" 1.0000 50 "micF" 1.0000 50 "yojN" 1.0000 50 "ubiG" 1.0000 50 "SF2314" 1.0000 50 "nrdA" 1.0000 50 "yfaH" 1.0000 50 "glpA" 1.0000 50 "yfaO" 1.0000 50 "SF2332" 1.0000 50 "SF2337" 1.0000 50 "elaC" 1.0000 50 "yfbL" 1.0000 50 "SF2366" 1.0000 50 "ackA" 1.0000 50 "yfcG" 1.0000 50 "flk" 1.0000 50 "SF2400" 1.0000 50 "SF2406" 1.0000 50 "fadL" 1.0000 50 "SF2422" 1.0000 50 "SF2425" 1.0000 50 "SF2430" 1.0000 50 "SF2432" 1.0000 50 "evgA" 1.0000 50 "SF2442a" 1.0000 50 "ddg" 1.0000 50 "SF2446" 1.0000 50 "SF2455" 1.0000 50 "nupC" 1.0000 50 "yfeC" 1.0000 50 "SF4490" 1.0000 50 "flxA" 1.0000 50 "yfeH" 1.0000 50 "cysZ" 1.0000 50 "ptsH" 1.0000 50 "yfeK" 1.0000 50 "murQ" 1.0000 50 "amiA" 1.0000 50 "SF2493" 1.0000 50 "SF2494" 1.0000 50 "SF2498" 1.0000 50 "SF2499" 1.0000 50 "talA" 1.0000 50 "narQ" 1.0000 50 "acrD" 1.0000 50 "yffB" 1.0000 50 "gcvR" 1.0000 50 "hyfA" 1.0000 50 "SF2538" 1.0000 50 "purM" 1.0000 50 "SF2547" 1.0000 50 "SF2550" 1.0000 50 "SF2551" 1.0000 50 "xseA" 1.0000 50 "sseA" 1.0000 50 "suhB" 1.0000 50 "hcaA1" 1.0000 50 "yphH" 1.0000 50 "hmpA" 1.0000 50 "yfhD" 1.0000 50 "yfhH" 1.0000 50 "ipaH_7" 1.0000 50 "SF2615" 1.0000 50 "SF2620" 1.0000 50 "yfhL" 1.0000 50 "nadB" 1.0000 50 "srmB" 1.0000 50 "yfiK" 1.0000 50 "SF2642" 1.0000 50 "trxC" 1.0000 50 "rluD" 1.0000 50 "yfiA" 1.0000 50 "pheA" 1.0000 50 "yfiL" 1.0000 50 "SF2671" 1.0000 50 "ppnK" 1.0000 50 "smpB" 1.0000 50 "SF2680" 1.0000 50 "SF2685" 1.0000 50 "SF2686" 1.0000 50 "SF2690" 1.0000 50 "SF2695" 1.0000 50 "SF2698" 1.0000 50 "SF2700" 1.0000 50 "nrdH" 1.0000 50 "proV" 1.0000 50 "srlA" 1.0000 50 "SF2733" 1.0000 50 "hypA" 1.0000 50 "mutS" 1.0000 50 "SF2755" 1.0000 50 "SF2756" 1.0000 50 "SF2760" 1.0000 50 "SF2763" 1.0000 50 "iap" 1.0000 50 "ygcM" 1.0000 50 "barA" 1.0000 50 "queF" 1.0000 50 "sdaC" 1.0000 50 "fucP" 1.0000 50 "gcvB" 1.0000 50 "SF2824" 1.0000 50 "SF4504" 1.0000 50 "argA" 1.0000 50 "mutH" 1.0000 50 "galR" 1.0000 50 "lysR" 1.0000 50 "SF2855" 1.0000 50 "SF2856" 1.0000 50 "SF2862" 1.0000 50 "SF2864" 1.0000 50 "SF2868" 1.0000 50 "ygfU" 1.0000 50 "SF2875" 1.0000 50 "fldB" 1.0000 50 "ygfZ" 1.0000 50 "bglA" 1.0000 50 "ygfE" 1.0000 50 "iciA" 1.0000 50 "sbm" 1.0000 50 "SF2913" 1.0000 50 "SF2924" 1.0000 50 "yggG" 1.0000 50 "metK" 1.0000 50 "galP" 1.0000 50 "yggS" 1.0000 50 "SF2947" 1.0000 50 "SF2952" 1.0000 50 "mutY" 1.0000 50 "yqgA" 1.0000 50 "SF2965" 1.0000 50 "SF2967" 1.0000 50 "sigA" 1.0000 50 "SF2971" 1.0000 50 "SF2977" 1.0000 50 "SF2984" 1.0000 50 "SF2986" 1.0000 50 "SF2987" 1.0000 50 "SF2989" 1.0000 50 "SF2991" 1.0000 50 "SF2994" 1.0000 50 "SF2995" 1.0000 50 "SF3003" 1.0000 50 "SF3004" 1.0000 50 "SF3005" 1.0000 50 "glcC" 1.0000 50 "SF3021" 1.0000 50 "yghT" 1.0000 50 "SF3036" 1.0000 50 "SF3047" 1.0000 50 "yghA" 1.0000 50 "metC" 1.0000 50 "yqhD" 1.0000 50 "yqhE" 1.0000 50 "ygiX" 1.0000 50 "mdaB" 1.0000 50 "tolC" 1.0000 50 "ygiE" 1.0000 50 "SF3082" 1.0000 50 "SF3083" 1.0000 50 "yqiI" 1.0000 50 "ygiM" 1.0000 50 "ygiH" 1.0000 50 "ttdA" 1.0000 50 "rpsU" 1.0000 50 "SF4508" 1.0000 50 "yqjI" 1.0000 50 "ygjG" 1.0000 50 "ebgR" 1.0000 50 "ygjL" 1.0000 50 "ygjP" 1.0000 50 "ygjT" 1.0000 50 "ygjU" 1.0000 50 "exuT" 1.0000 50 "yqjA" 1.0000 50 "yhaH" 1.0000 50 "yhaK" 1.0000 50 "tdcR" 1.0000 50 "yhaC" 1.0000 50 "yhaG" 1.0000 50 "agaZ" 1.0000 50 "agaC" 1.0000 50 "SF3181" 1.0000 50 "yraK" 1.0000 50 "yraM" 1.0000 50 "yhbO" 1.0000 50 "yhbQ" 1.0000 50 "yhbU" 1.0000 50 "argG" 1.0000 50 "yhbY" 1.0000 50 "dacB" 1.0000 50 "ispB" 1.0000 50 "nlp" 1.0000 50 "yrbG" 1.0000 50 "yrbL" 1.0000 50 "gltB" 1.0000 50 "yhcB" 1.0000 50 "degS" 1.0000 50 "argR" 1.0000 50 "yhcN" 1.0000 50 "yhcS" 1.0000 50 "yhdH" 1.0000 50 "accB" 1.0000 50 "yhdG" 1.0000 50 "SF3303" 1.0000 50 "yhdX" 1.0000 50 "yrdA" 1.0000 50 "def" 1.0000 50 "SF3354" 1.0000 50 "slyX" 1.0000 50 "yheS" 1.0000 50 "crp" 1.0000 50 "yhfC" 1.0000 50 "nirB" 1.0000 50 "yhfL" 1.0000 50 "yhfM" 1.0000 50 "mrcA" 1.0000 50 "yrfF" 1.0000 50 "pckA" 1.0000 50 "greB" 1.0000 50 "feoA" 1.0000 50 "yhgA" 1.0000 50 "yhgH" 1.0000 50 "gntT" 1.0000 50 "malT" 1.0000 50 "rtcR" 1.0000 50 "glpD" 1.0000 50 "yhgN" 1.0000 50 "yhhY" 1.0000 50 "yhhA" 1.0000 50 "SF3467" 1.0000 50 "yhhK" 1.0000 50 "rsmD" 1.0000 50 "yhhN" 1.0000 50 "yhhQ" 1.0000 50 "yhhT" 1.0000 50 "yhiM" 1.0000 50 "SF3509" 1.0000 50 "SF3512" 1.0000 50 "SF3515" 1.0000 50 "pitA" 1.0000 50 "uspA" 1.0000 50 "yhiP" 1.0000 50 "yhiR" 1.0000 50 "SF3534" 1.0000 50 "SF3539" 1.0000 50 "slp" 1.0000 50 "hdeD" 1.0000 50 "yhiE" 1.0000 50 "yhiU" 1.0000 50 "treF" 1.0000 50 "yhjC" 1.0000 50 "yhjE" 1.0000 50 "kdgK" 1.0000 50 "yhjS" 1.0000 50 "yhjV" 1.0000 50 "tag" 1.0000 50 "yiaD" 1.0000 50 "cspA" 1.0000 50 "gadA" 1.0000 50 "yhiX" 1.0000 50 "yhiW" 1.0000 50 "yiaH" 1.0000 50 "xylF" 1.0000 50 "malS" 1.0000 50 "yiaK" 1.0000 50 "SF3625a" 1.0000 50 "mtlA" 1.0000 50 "yibL" 1.0000 50 "SF3639" 1.0000 50 "SF3641" 1.0000 50 "lldP" 1.0000 50 "yibO" 1.0000 50 "rfaD" 1.0000 50 "kdtA" 1.0000 50 "dfp" 1.0000 50 "yicC" 1.0000 50 "dinD" 1.0000 50 "yicG" 1.0000 50 "gmk" 1.0000 50 "yicE" 1.0000 50 "SF4518" 1.0000 50 "SF3698" 1.0000 50 "shiA" 1.0000 50 "shiB" 1.0000 50 "SF3710" 1.0000 50 "shiE" 1.0000 50 "iucA" 1.0000 50 "SF3720" 1.0000 50 "lpfC" 1.0000 50 "SF3726" 1.0000 50 "pstS" 1.0000 50 "bglG" 1.0000 50 "yieC" 1.0000 50 "yieG" 1.0000 50 "SF3749" 1.0000 50 "SF3762" 1.0000 50 "yidB" 1.0000 50 "yidW" 1.0000 50 "yidR" 1.0000 50 "ibpA" 1.0000 50 "glvB" 1.0000 50 "yidK" 1.0000 50 "yidH" 1.0000 50 "ilvB" 1.0000 50 "yicO" 1.0000 50 "SF3801" 1.0000 50 "SF3805" 1.0000 50 "asnA" 1.0000 50 "SF3827" 1.0000 50 "rrsC" 1.0000 50 "yifE" 1.0000 50 "ilvL" 1.0000 50 "ilvC" 1.0000 50 "rep" 1.0000 50 "trxA" 1.0000 50 "cyaA" 1.0000 50 "yifL" 1.0000 50 "SF3892" 1.0000 50 "corA" 1.0000 50 "pldA" 1.0000 50 "pldB" 1.0000 50 "metE" 1.0000 50 "udp" 1.0000 50 "yigC" 1.0000 50 "pepQ" 1.0000 50 "rrsA" 1.0000 50 "yihD" 1.0000 50 "polA" 1.0000 50 "yihI" 1.0000 50 "yihK" 1.0000 50 "yihL" 1.0000 50 "yihV" 1.0000 50 "SF3963" 1.0000 50 "yiiE" 1.0000 50 "yiiF" 1.0000 50 "fdhD" 1.0000 50 "rhaS" 1.0000 50 "sodA" 1.0000 50 "kdgT" 1.0000 50 "yiiM" 1.0000 50 "SF3992" 1.0000 50 "sbp" 1.0000 50 "yiiR" 1.0000 50 "yiiS" 1.0000 50 "yiiU" 1.0000 50 "rpmE" 1.0000 50 "metB" 1.0000 50 "metF" 1.0000 50 "katG" 1.0000 50 "frwC" 1.0000 50 "argC" 1.0000 50 "SF4039" 1.0000 50 "oxyR" 1.0000 50 "yijC" 1.0000 50 "btuB" 1.0000 50 "rrsB" 1.0000 50 "SF4537" 1.0000 50 "secE" 1.0000 50 "rplJ" 1.0000 50 "rpoB" 1.0000 50 "nudC" 1.0000 50 "hydH" 1.0000 50 "rrsE" 1.0000 50 "aceB" 1.0000 50 "metH" 1.0000 50 "yjbB" 1.0000 50 "yjbC" 1.0000 50 "yjdH" 1.0000 50 "dcuB" 1.0000 50 "melR" 1.0000 50 "adiY" 1.0000 50 "phnA" 1.0000 50 "yjcC" 1.0000 50 "soxR" 1.0000 50 "yjcD" 1.0000 50 "nrfA" 1.0000 50 "gltP" 1.0000 50 "uvrA" 1.0000 50 "SF4150" 1.0000 50 "qor" 1.0000 50 "yjbK" 1.0000 50 "plsB" 1.0000 50 "malE" 1.0000 50 "xylE" 1.0000 50 "SF4175a" 1.0000 50 "lysC" 1.0000 50 "SF4185" 1.0000 50 "yjiH" 1.0000 50 "yjiC" 1.0000 50 "gntP" 1.0000 50 "yjhA" 1.0000 50 "SF4216" 1.0000 50 "SF4217" 1.0000 50 "yjgB" 1.0000 50 "pepA" 1.0000 50 "SF4233" 1.0000 50 "argI" 1.0000 50 "yjgI" 1.0000 50 "pyrL" 1.0000 50 "treR" 1.0000 50 "nrdD" 1.0000 50 "yjgA" 1.0000 50 "fbp" 1.0000 50 "ppa" 1.0000 50 "msrA" 1.0000 50 "ytfL" 1.0000 50 "ytfJ" 1.0000 50 "cpdB" 1.0000 50 "ytfG" 1.0000 50 "ytfB" 1.0000 50 "fabG" 1.0000 50 "SF4285" 1.0000 50 "SF4294" 1.0000 50 "groES" 1.0000 50 "efp" 1.0000 50 "yjeA" 1.0000 50 "SF4316a" 1.0000 50 "yjeR" 1.0000 50 "SF4547" 1.0000 50 "yjeF" 1.0000 50 "yjeB" 1.0000 50 "yjfM" 1.0000 50 "yjfP" 1.0000 50 "sgaT" 1.0000 50 "rpsF" 1.0000 50 "SF4358" 1.0000 50 "SF4362" 1.0000 50 "hpcR" 1.0000 50 "yjjN" 1.0000 50 "SF4401" 1.0000 50 "holD" 1.0000 50 "osmY" 1.0000 50 "deoC" 1.0000 50 "serB" 1.0000 50 "slt" 1.0000 50 "gpmB" 1.0000 50 "creA" 1.0000 50 "lasT" 1.0000 50 "ospB" 1.0000 50 "phoN2/apy" 1.0000 50 "CP0013" 1.0000 50 "CP0018" 1.0000 50 "CP0021" 1.0000 50 "ospD1" 1.0000 50 "CP0023" 1.0000 50 "ipgB2" 1.0000 50 "CP0025" 1.0000 50 "CP0026" 1.0000 50 "CP0027" 1.0000 50 "parA" 1.0000 50 "CP0033" 1.0000 50 "CP0037" 1.0000 50 "CP0042" 1.0000 50 "CP0045" 1.0000 50 "CP0047" 1.0000 50 "ipaH2.5" 1.0000 50 "CP0056" 1.0000 50 "CP0060a" 1.0000 50 "CP0067" 1.0000 50 "CP0071" 1.0000 50 "CP0073" 1.0000 50 "ipaH7.8" 1.0000 50 "ipaH4.5" 1.0000 50 "CP0081" 1.0000 50 "ipgH" 1.0000 50 "CP0084" 1.0000 50 "CP0089" 1.0000 50 "CP0090" 1.0000 50 "CP0096" 1.0000 50 "CP0101" 1.0000 50 "CP0111" 1.0000 50 "ospC3" 1.0000 50 "CP0116" 1.0000 50 "CP0118" 1.0000 50 "CP0119" 1.0000 50 "ipaJ" 1.0000 50 "ipgD" 1.0000 50 "CP0159" 1.0000 50 "CP0163" 1.0000 50 "CP0169" 1.0000 50 "CP0172" 1.0000 50 "icsA/virG" 1.0000 50 "CP0183" 1.0000 50 "CP0184" 1.0000 50 "phoN1" 1.0000 50 "yccB" 1.0000 50 "CP0211" 1.0000 50 "CP0217" 1.0000 50 "CP0221" 1.0000 50 "CP0222" 1.0000 50 "ccdA" 1.0000 50 "ipaH9.8" 1.0000 50 "ospG" 1.0000 50 "CP0230" 1.0000 50 "CP0232" 1.0000 50 "CP0233" 1.0000 50 "shf" 1.0000 50 "traD" 1.0000 50 "CP0247" 1.0000 50 "CP0256" 1.0000 50 "yihA" 1.0000 50 "repB" 1.0000 50 "tap" 1.0000 50 "CP0261" 1.0000 50 "CP0264" 1.0000 50 "CP0267" 1.0000 50 "CP0270" 1.0000 50 "icsP/sopA" 1.0000 50 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme control.fasta -dna -nmotifs 1 -minw 5 -maxw 8 model: mod= zoops nmotifs= 1 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 5 maxw= 8 nsites: minsites= 2 maxsites= 987 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 49350 N= 987 sample: seed= 0 hsfrac= 0 searchsize= 49350 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.219 G 0.207 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.219 G 0.207 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCCACGCM MEME-1 width = 8 sites = 25 llr = 245 E-value = 6.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6::7:::4 pos.-specific C :aa:a:a6 probability G 4::3:a:: matrix T :::::::: bits 2.3 ** *** 2.0 ** *** 1.8 ** *** 1.6 ** *** Relative 1.4 ** *** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCACGCC consensus G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- "SF4316a" 36 8.53e-06 GCCGTTACGC ACCACGCC TTCAGTA "SF4216" 4 8.53e-06 CGC ACCACGCC TTCAGTAGCG "SF3963" 40 8.53e-06 GCCGTTACGC ACCACGCC TTC "slp" 31 8.53e-06 GGATACTCAT ACCACGCC CCAAAATAAC "SF3534" 28 8.53e-06 GCCGTTACGC ACCACGCC TTCAGTAGCG "yhdX" 43 8.53e-06 GCCGTTACGC ACCACGCC "SF2952" 42 8.53e-06 GCCGTTACGC ACCACGCC T "yehR" 8 8.53e-06 GTTACGC ACCACGCC TTCAGTAGCG "SF1156" 5 8.53e-06 ACGC ACCACGCC TTCAGTAGCG "SF2967" 2 2.09e-05 G ACCGCGCC ATCGAAAGTA "yadD" 7 2.09e-05 TTGCGT ACCGCGCC GAAGCGTGCC "SF4175a" 26 3.65e-05 GGCCGGATAA GCCGCGCC TGGCGGCGCA "mltE" 33 3.65e-05 GGCGCTGGAT ACCACGCA GCGCGGCGTG "SF1025" 30 3.65e-05 GTGATAACAC GCCGCGCC AGCAGGTTAT "SF0755" 12 3.65e-05 AGGTATCGGC ACCACGCA TATAAATGGC "brnQ" 33 3.65e-05 ACTATTCTTC GCCGCGCC TGGTTGGGAG "queF" 23 4.45e-05 TGCTCTTCAT GCCACGCA TCGCAGTAGC "SF1755" 15 4.45e-05 GGAAATGGAA GCCACGCA AGCACCTTAA "ydeN" 37 4.45e-05 GGAAATGGAA GCCACGCA AGCACC "SF1353" 13 4.45e-05 GGAAATGGAA GCCACGCA AGCACCTTAA "ycbS" 6 4.45e-05 TGGAA GCCACGCA AGCACCTTAA "ykgH" 2 4.45e-05 A GCCACGCA AGCACCTTAA "gltP" 18 5.26e-05 TGCGCAACAT ACCGCGCA AATGATACTG "ybaQ" 20 5.26e-05 TGTAATGATT ACCGCGCA GCGCGGCCCA "CP0089" 29 5.84e-05 TCATACGCAG GCCGCGCA TACTGCGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- "SF4316a" 8.5e-06 35_[+1]_7 "SF4216" 8.5e-06 3_[+1]_39 "SF3963" 8.5e-06 39_[+1]_3 "slp" 8.5e-06 30_[+1]_12 "SF3534" 8.5e-06 27_[+1]_15 "yhdX" 8.5e-06 42_[+1] "SF2952" 8.5e-06 41_[+1]_1 "yehR" 8.5e-06 7_[+1]_35 "SF1156" 8.5e-06 4_[+1]_38 "SF2967" 2.1e-05 1_[+1]_41 "yadD" 2.1e-05 6_[+1]_36 "SF4175a" 3.6e-05 25_[+1]_17 "mltE" 3.6e-05 32_[+1]_10 "SF1025" 3.6e-05 29_[+1]_13 "SF0755" 3.6e-05 11_[+1]_31 "brnQ" 3.6e-05 32_[+1]_10 "queF" 4.5e-05 22_[+1]_20 "SF1755" 4.5e-05 14_[+1]_28 "ydeN" 4.5e-05 36_[+1]_6 "SF1353" 4.5e-05 12_[+1]_30 "ycbS" 4.5e-05 5_[+1]_37 "ykgH" 4.5e-05 1_[+1]_41 "gltP" 5.3e-05 17_[+1]_25 "ybaQ" 5.3e-05 19_[+1]_23 "CP0089" 5.8e-05 28_[+1]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCACGCM width=8 seqs=25 "SF4316a" ( 36) ACCACGCC 1 "SF4216" ( 4) ACCACGCC 1 "SF3963" ( 40) ACCACGCC 1 "slp" ( 31) ACCACGCC 1 "SF3534" ( 28) ACCACGCC 1 "yhdX" ( 43) ACCACGCC 1 "SF2952" ( 42) ACCACGCC 1 "yehR" ( 8) ACCACGCC 1 "SF1156" ( 5) ACCACGCC 1 "SF2967" ( 2) ACCGCGCC 1 "yadD" ( 7) ACCGCGCC 1 "SF4175a" ( 26) GCCGCGCC 1 "mltE" ( 33) ACCACGCA 1 "SF1025" ( 30) GCCGCGCC 1 "SF0755" ( 12) ACCACGCA 1 "brnQ" ( 33) GCCGCGCC 1 "queF" ( 23) GCCACGCA 1 "SF1755" ( 15) GCCACGCA 1 "ydeN" ( 37) GCCACGCA 1 "SF1353" ( 13) GCCACGCA 1 "ycbS" ( 6) GCCACGCA 1 "ykgH" ( 2) GCCACGCA 1 "gltP" ( 18) ACCGCGCA 1 "ybaQ" ( 20) ACCGCGCA 1 "CP0089" ( 29) GCCGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 42441 bayes= 10.4367 E= 6.1e-001 107 -1129 95 -1129 -1129 219 -1129 -1129 -1129 219 -1129 -1129 125 -1129 63 -1129 -1129 219 -1129 -1129 -1129 -1129 227 -1129 -1129 219 -1129 -1129 62 135 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 6.1e-001 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.680000 0.000000 0.320000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440000 0.560000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCACGCM MEME-1 regular expression -------------------------------------------------------------------------------- [AG]CC[AG]CGC[CA] -------------------------------------------------------------------------------- Time 123.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- "SF0005" 8.16e-01 50 "SF0008" 3.53e-01 50 "dnaK" 2.35e-01 50 "nhaA" 3.11e-01 50 "SF0020a" 1.70e-01 50 "slpA" 6.14e-01 50 "carA" 4.05e-01 50 "caiF" 7.90e-01 50 "fixA" 9.99e-01 50 "fixC" 2.63e-01 50 "djlA" 2.35e-01 50 "araC" 9.75e-01 50 "yabM" 7.90e-01 50 "leuO" 9.98e-01 50 "ilvI" 1.00e+00 50 "yabB" 1.00e-01 50 "guaC" 3.11e-01 50 "ampD" 2.35e-01 50 "pdhR" 9.35e-01 50 "lpdA" 6.14e-01 50 "acnB" 1.97e-01 50 "yacK" 2.35e-01 50 "hpt" 9.81e-01 50 "yadG" 9.35e-01 50 "yadD" 8.98e-04 6_[+1(2.09e-05)]_36 "insB" 4.14e-01 50 "hrpB" 1.00e-01 50 "fhuA" 4.05e-01 50 "yadQ" 6.14e-01 50 "SF0152" 4.26e-02 50 "htrA" 1.00e-01 50 "rpsB" 8.98e-01 50 "tsf" 1.70e-01 50 "frr" 6.81e-01 50 "yaeQ" 3.82e-01 50 "yaeD" 2.04e-02 50 "rrsH" 6.81e-01 50 "SF4438" 6.14e-01 50 "yafD" 9.35e-01 50 "yafE" 3.53e-02 50 "yafS" 6.58e-01 50 "dnaQ" 2.63e-01 50 "SF0209" 4.05e-01 50 "SF0215" 2.48e-01 50 "ddl" 3.11e-01 50 "SF0234" 3.11e-01 50 "yaiH" 1.20e-01 50 "insA" 7.09e-01 50 "hemB" 1.00e+00 50 "ykgH" 1.91e-03 1_[+1(4.45e-05)]_41 "ykfE" 2.35e-01 50 "gmhA" 4.92e-01 50 "yafJ" 1.97e-01 50 "yafL" 8.98e-01 50 "mbhA" 5.90e-02 50 "SF0283" 6.14e-01 50 "gpt" 1.20e-01 50 "SF0302" 9.48e-01 50 "gtrAI" 1.70e-01 50 "SF0309" 3.82e-01 50 "SF0314" 7.53e-01 50 "SF0315" 4.38e-02 50 "adrA" 6.81e-01 50 "yaiI" 4.68e-01 50 "aroM" 5.32e-02 50 "SF0328" 7.90e-01 50 "yajF" 8.10e-02 50 "phoB" 4.26e-02 50 "brnQ" 1.57e-03 32_[+1(3.65e-05)]_10 "queA" 4.87e-01 50 "nrdR" 4.87e-01 50 "SF0360" 4.86e-02 50 "yajQ" 2.04e-02 50 "bolA" 2.35e-01 50 "clpP" 9.22e-01 50 "hupB" 4.66e-01 50 "cof" 3.65e-01 50 "ybaY" 7.09e-01 50 "ffs" 1.97e-01 50 "acrR" 4.54e-01 50 "ybaN" 1.00e-01 50 "gsk" 2.35e-01 50 "ushA" 7.01e-02 50 "ybaQ" 2.26e-03 19_[+1(5.26e-05)]_23 "ybaS" 9.75e-01 50 "ybbL" 4.05e-01 50 "ybbA" 9.49e-03 50 "ybbT" 8.51e-01 50 "ylbF" 1.20e-01 50 "cysS" 7.53e-01 50 "sfmA" 7.53e-01 50 "sfmC" 1.00e-01 50 "SF4444" 7.90e-01 50 "ylcB" 2.35e-01 50 "SF0478" 4.14e-01 50 "ybdE" 4.87e-01 50 "SF0489" 7.53e-01 50 "SF0494" 6.81e-01 50 "fes" 4.26e-02 50 "entF" 2.63e-01 50 "fepE" 9.99e-01 50 "ybdA" 2.35e-01 50 "entC" 2.35e-01 50 "ybdL" 5.10e-03 50 "SF0519" 3.65e-01 50 "ahpC" 4.05e-01 50 "ahpF" 4.05e-01 50 "ybdR" 9.98e-01 50 "ybhA" 9.30e-01 50 "modE" 5.58e-01 50 "galE" 4.86e-02 50 "gpmA" 3.65e-01 50 "SF0551" 7.90e-01 50 "farR" 3.53e-02 50 "gltA" 4.05e-01 50 "ybgD" 9.22e-01 50 "ybgH" 1.00e-01 50 "SF0591" 3.11e-01 50 "kdpA" 9.70e-01 50 "kdpD" 7.01e-03 50 "speF" 8.16e-01 50 "ybfF" 2.35e-01 50 "fur" 1.12e-01 50 "nagB" 2.35e-01 50 "asnB" 2.35e-01 50 "SF4448" 5.70e-03 50 "yleA" 9.30e-01 50 "ybeJ" 6.81e-01 50 "ybeT" 3.82e-01 50 "ybeQ" 9.22e-01 50 "leuS" 2.35e-01 50 "ybeB" 1.70e-01 50 "ybeF" 9.70e-01 50 "lipA" 6.81e-01 50 "ccrB" 1.53e-01 50 "dcuC" 8.67e-01 50 "SF0662" 9.70e-01 50 "SF0676" 1.12e-01 50 "SF0677" 7.01e-02 50 "SF0682" 8.98e-01 50 "SF0684" 4.87e-01 50 "ybcQ" 2.51e-02 50 "SF0689" 9.99e-01 50 "SF0697" 6.58e-01 50 "SF0701" 9.44e-01 50 "bioB" 9.22e-01 50 "uvrB" 3.82e-01 50 "moaA" 3.53e-01 50 "ybhM" 3.11e-01 50 "ybhQ" 3.82e-01 50 "rhlE" 2.04e-02 50 "dinG" 3.82e-01 50 "SF0755" 1.57e-03 11_[+1(3.65e-05)]_31 "ybiN" 3.11e-01 50 "ompX" 9.44e-01 50 "SF0767" 9.44e-01 50 "ybiT" 7.90e-01 50 "mipB" 1.53e-01 50 "ybiK" 2.48e-01 50 "bssR" 7.90e-01 50 "SF0789" 4.05e-01 50 "cmr" 4.87e-01 50 "SF0799" 2.51e-02 50 "ybjM" 5.17e-01 50 "ybjC" 1.00e-01 50 "mdaA" 2.35e-01 50 "potF" 3.82e-01 50 "SF0820" 1.00e+00 50 "SF0821" 3.53e-01 50 "ybjD" 6.14e-01 50 "SF0837" 3.11e-01 50 "clpS" 9.22e-01 50 "lrp" 1.20e-01 50 "dmsA" 3.11e-01 50 "ycaD" 9.94e-01 50 "SF0858" 9.22e-01 50 "SF0865" 7.01e-02 50 "SF0876" 6.58e-01 50 "SF0877" 7.53e-01 50 "SF0880" 8.16e-01 50 "SF0881" 6.81e-01 50 "SF0886" 6.14e-01 50 "ybhE" 6.81e-01 50 "ybhH" 7.53e-01 50 "SF0901" 9.22e-01 50 "smtA" 8.98e-01 50 "ycbB" 8.51e-01 50 "SF0925a" 4.39e-01 50 "pepN" 6.14e-01 50 "ycbS" 1.91e-03 5_[+1(4.45e-05)]_37 "rlmL" 9.75e-01 50 "SF953a" 2.35e-01 50 "ycbG" 4.05e-01 50 "SF0959" 9.49e-03 50 "helD" 5.80e-02 50 "SF0967" 1.97e-01 50 "SF0969" 1.20e-01 50 "hyaA" 6.58e-01 50 "appC" 3.53e-01 50 "cspG" 3.11e-01 50 "torT" 2.51e-02 50 "torC" 2.51e-02 50 "yccE" 3.82e-01 50 "agp" 8.10e-02 50 "ycdC" 9.44e-01 50 "SF1019" 5.58e-01 50 "SF1022" 3.82e-01 50 "SF1025" 1.57e-03 29_[+1(3.65e-05)]_13 "ycdW" 1.53e-01 50 "csgB" 1.00e-01 50 "SF1037" 7.90e-01 50 "csgC" 6.14e-01 50 "mdoG" 7.53e-01 50 "SF1047" 3.82e-01 50 "SF1051" 8.16e-01 50 "SF1054" 2.04e-02 50 "SF1056" 1.47e-02 50 "SF1058" 9.90e-01 50 "yceA" 9.49e-03 50 "rimJ" 4.54e-01 50 "flgB" 4.25e-01 50 "SF1089" 4.86e-02 50 "yceD" 9.22e-01 50 "acpP" 8.16e-01 50 "ptsG" 9.30e-01 50 "ycfF" 8.98e-01 50 "ndh" 3.53e-01 50 "ycfJ" 1.70e-01 50 "ycfR" 8.51e-01 50 "ycfU" 8.74e-01 50 "pepT" 9.75e-01 50 "SF1131" 1.00e+00 50 "SF1133a" 4.39e-01 50 "SF1136" 5.80e-02 50 "SF1137" 3.53e-02 50 "SF1138" 2.35e-01 50 "icdA" 8.16e-01 50 "SF1156" 3.67e-04 4_[+1(8.53e-06)]_38 "SF1156b" 1.00e+00 50 "SF1160" 2.35e-01 50 "SF1166" 7.09e-01 50 "ycgL" 3.11e-01 50 "umuD" 1.12e-01 50 "fadR" 8.51e-01 50 "dadA" 1.97e-01 50 "mltE" 1.57e-03 32_[+1(3.65e-05)]_10 "SF1185" 9.44e-01 50 "ymgE" 9.96e-01 50 "SF1195" 1.00e+00 50 "SF1198" 3.53e-02 50 "SF1204" 3.11e-01 50 "SF1205a" 9.90e-01 50 "ychH" 9.63e-01 50 "hemA" 9.86e-01 50 "chaB" 9.94e-01 50 "ychP" 6.14e-02 50 "narK" 9.94e-01 50 "narG" 6.58e-01 50 "ychK" 6.14e-01 50 "galU" 4.25e-01 50 "tdk" 6.58e-01 50 "ychE" 8.98e-01 50 "oppA" 8.98e-01 50 "SF1252" 3.65e-01 50 "tonB" 3.53e-01 50 "yciD" 6.14e-01 50 "yciV" 2.35e-01 50 "sohB" 1.53e-01 50 "topA" 2.35e-01 50 "cysB" 5.58e-01 50 "SF1278" 9.49e-03 50 "acnA" 6.14e-01 50 "pgpB" 8.67e-01 50 "puuD" 9.30e-01 50 "pspA" 4.87e-01 50 "SF1316" 8.98e-01 50 "ycjX" 4.14e-01 50 "ycjG" 7.90e-01 50 "SF1335" 2.63e-01 50 "ycjZ" 9.22e-01 50 "SF1344" 1.00e-01 50 "SF1350a" 7.90e-01 50 "SF1350b" 3.11e-01 50 "SF1353" 1.91e-03 12_[+1(4.45e-05)]_30 "SF1356" 4.26e-02 50 "SF1359" 9.44e-01 50 "SF1374" 8.16e-01 50 "SF1382" 4.92e-01 50 "pphA" 9.86e-01 50 "SF1393" 2.35e-01 50 "SF1398" 7.53e-01 50 "SF1400" 8.98e-01 50 "SF1402" 4.05e-01 50 "yoaE" 1.97e-01 50 "SF1417" 3.11e-01 50 "SF1420" 9.22e-01 50 "SF1428" 4.26e-02 50 "yoaF" 7.09e-01 50 "yeaM" 4.14e-01 50 "SF1436" 4.25e-01 50 "SF1439" 9.49e-03 50 "yeaF" 1.20e-01 50 "yeaA" 6.14e-01 50 "SF1447" 8.10e-02 50 "ydjA" 6.14e-01 50 "SF1463" 4.26e-02 50 "SF1465" 7.09e-01 50 "SF1467" 6.14e-01 50 "SF1471" 2.48e-01 50 "cstC" 4.25e-01 50 "spy" 8.51e-01 50 "SF1484" 9.44e-01 50 "osmE" 6.58e-01 50 "celA" 9.44e-01 50 "celF" 9.99e-01 50 "SF1497" 3.53e-01 50 "ydjO" 1.00e+00 50 "SF1504" 1.00e-01 50 "SF1508" 1.20e-01 50 "thrS" 9.30e-01 50 "pheS" 2.35e-01 50 "SF1524" 8.16e-01 50 "ppsA" 1.12e-01 50 "SF1534" 4.05e-01 50 "ycgW" 1.12e-01 50 "SF1552" 6.14e-01 50 "dcp" 4.39e-01 50 "SF1559" 8.10e-02 50 "ydeD" 9.96e-01 50 "ydeB" 1.12e-01 50 "SF1568" 7.90e-01 50 "SF1571" 7.90e-01 50 "uxaB" 6.16e-03 50 "SF1575" 8.16e-01 50 "SF1583" 3.82e-01 50 "SF1593" 8.98e-01 50 "SF1596" 7.53e-01 50 "SF1607" 9.96e-01 50 "ynfM" 3.53e-01 50 "asr" 4.39e-01 50 "SF1619" 1.97e-01 50 "tqsA" 1.47e-02 50 "SF1625" 9.94e-01 50 "rstA" 2.35e-01 50 "SF1631" 1.00e-01 50 "manA" 7.53e-01 50 "malX" 9.50e-01 50 "SF1649a" 5.66e-02 50 "SF1650" 8.51e-01 50 "tppB" 8.98e-01 50 "slyB" 1.00e+00 50 "SF1670" 9.35e-01 50 "SF1676" 1.00e-01 50 "ydhO" 4.25e-01 50 "SF1686" 3.53e-01 50 "ydhC" 3.11e-01 50 "cfa" 5.17e-01 50 "ydhE" 9.22e-01 50 "SF4469" 4.87e-01 50 "pykF" 3.53e-01 50 "lpp" 4.54e-01 50 "SF1709" 1.20e-01 50 "SF1718" 1.47e-02 50 "SF1719" 3.81e-03 32_[+1(8.87e-05)]_10 "SF1721" 8.98e-01 50 "ydeN" 1.91e-03 36_[+1(4.45e-05)]_6 "yddA" 3.53e-01 50 "SF1731" 2.63e-01 50 "gadB" 8.51e-01 50 "yddV" 9.44e-01 50 "SF1739" 1.00e-01 50 "sfcA" 2.35e-01 50 "yddG" 2.35e-01 50 "SF1755" 1.91e-03 14_[+1(4.45e-05)]_28 "narU" 4.15e-01 50 "SF1769" 9.22e-01 50 "SF1777" 1.53e-01 50 "SF1778a" 3.11e-01 50 "SF1782" 7.90e-01 50 "SF1788" 5.58e-01 50 "SF1790" 7.90e-01 50 "SF1792a" 4.66e-01 50 "SF1795" 9.70e-01 50 "SF1799" 9.22e-01 50 "acpD" 2.35e-01 50 "SF1804" 6.58e-01 50 "ydbH" 2.35e-01 50 "ydbK" 9.22e-01 50 "SF1823" 9.35e-01 50 "SF1828" 2.35e-01 50 "SF1831" 1.47e-02 50 "SF1834" 2.04e-02 50 "SF1834a" 4.25e-01 50 "SF1840" 9.22e-01 50 "SF1843" 5.58e-01 50 "SF1847" 6.58e-01 50 "SF1849" 6.58e-01 50 "holE" 9.86e-01 50 "purT" 1.97e-01 50 "yebK" 9.30e-01 50 "znuC" 1.00e-01 50 "SF1872" 8.51e-01 50 "yecD" 6.14e-02 50 "SF1879" 1.97e-01 50 "ipaH_4" 7.09e-01 50 "SF1897" 2.63e-01 50 "SF1900" 4.38e-02 50 "SF1904" 2.04e-02 50 "yecE" 3.53e-01 50 "argS" 5.70e-03 50 "SF1927" 8.51e-01 50 "SF1928" 8.10e-02 50 "yecI" 4.39e-01 50 "SF1950" 3.11e-01 50 "tyrP" 2.35e-01 50 "yecF" 1.00e-01 50 "fliD" 7.09e-01 50 "yedE" 5.58e-01 50 "SF1976" 1.20e-01 50 "nmpC" 7.90e-01 50 "fliF" 8.98e-01 50 "rcsA" 5.58e-01 50 "SF1998" 3.53e-02 50 "SF1999" 1.70e-01 50 "yedA" 8.16e-01 50 "SF2009" 1.12e-01 50 "SF2017" 8.16e-01 50 "SF2020" 8.51e-01 50 "SF2021" 6.81e-01 50 "ipaH_5" 8.51e-01 50 "SF2042a" 1.53e-01 50 "SF2045" 9.22e-01 50 "SF2046" 2.35e-01 50 "SF2051" 3.82e-01 50 "amn" 4.39e-01 50 "SF2054" 1.00e+00 50 "SF4484" 6.58e-01 50 "SF4485" 1.00e-01 50 "SF2064" 3.53e-02 50 "SF2065" 1.00e-01 50 "SF2066" 8.16e-01 50 "SF2069" 7.09e-01 50 "sbcB" 4.86e-02 50 "hisG" 9.30e-01 50 "yegH" 7.90e-01 50 "yegE" 4.05e-01 50 "yegD" 4.26e-02 50 "SF2138" 2.63e-01 50 "SF2149" 3.53e-01 50 "SF2160" 7.09e-01 50 "SF2162" 5.32e-02 50 "yohM" 2.48e-01 50 "yohN" 9.22e-01 50 "metG" 5.58e-01 50 "SF2181" 3.11e-01 50 "molR_2" 1.97e-01 50 "yehI" 6.14e-01 50 "yehL" 6.14e-01 50 "yehR" 3.67e-04 7_[+1(8.53e-06)]_35 "SF2199" 3.53e-01 50 "SF2200" 5.58e-01 50 "SF2201" 6.81e-01 50 "ipaH_6" 8.51e-01 50 "SF2211" 4.05e-01 50 "dld" 9.90e-01 50 "yohD" 3.53e-02 50 "yohJ" 4.14e-01 50 "yeiG" 3.53e-01 50 "yeiH" 9.90e-01 50 "yeiL" 2.51e-02 50 "yeiO" 3.11e-01 50 "yeiP" 4.86e-02 50 "yeiQ" 5.17e-01 50 "spr" 4.92e-01 50 "yejH" 7.90e-01 50 "yejL" 4.26e-02 50 "narP" 8.16e-01 50 "eco" 8.98e-01 50 "micF" 7.90e-01 50 "yojN" 4.92e-01 50 "ubiG" 7.53e-01 50 "SF2314" 1.20e-01 50 "nrdA" 7.53e-01 50 "yfaH" 3.53e-01 50 "glpA" 3.11e-01 50 "yfaO" 1.70e-01 50 "SF2332" 7.09e-01 50 "SF2337" 6.14e-01 50 "elaC" 2.26e-03 24_[+1(5.26e-05)]_18 "yfbL" 4.92e-01 50 "SF2366" 2.63e-01 50 "ackA" 3.11e-01 50 "yfcG" 4.25e-01 50 "flk" 7.90e-01 50 "SF2400" 7.01e-02 50 "SF2406" 3.53e-01 50 "fadL" 4.25e-01 50 "SF2422" 2.35e-01 50 "SF2425" 1.97e-01 50 "SF2430" 1.97e-01 50 "SF2432" 7.53e-01 50 "evgA" 9.48e-01 50 "SF2442a" 3.53e-01 50 "ddg" 7.53e-01 50 "SF2446" 8.51e-01 50 "SF2455" 1.47e-02 50 "nupC" 7.53e-01 50 "yfeC" 1.70e-01 50 "SF4490" 3.82e-01 50 "flxA" 2.63e-01 50 "yfeH" 4.87e-01 50 "cysZ" 4.05e-01 50 "ptsH" 4.25e-01 50 "yfeK" 3.53e-02 50 "murQ" 6.14e-01 50 "amiA" 9.98e-01 50 "SF2493" 5.52e-02 50 "SF2494" 7.90e-01 50 "SF2498" 1.20e-01 50 "SF2499" 8.51e-01 50 "talA" 7.53e-01 50 "narQ" 7.53e-01 50 "acrD" 9.96e-01 50 "yffB" 1.00e+00 50 "gcvR" 6.81e-01 50 "hyfA" 4.05e-01 50 "SF2538" 4.54e-01 50 "purM" 9.49e-03 50 "SF2547" 9.63e-01 50 "SF2550" 9.90e-01 50 "SF2551" 9.50e-01 50 "xseA" 3.53e-02 50 "sseA" 1.12e-01 50 "suhB" 8.51e-01 50 "hcaA1" 6.14e-01 50 "yphH" 1.20e-01 50 "hmpA" 9.22e-01 50 "yfhD" 9.55e-01 50 "yfhH" 2.48e-01 50 "ipaH_7" 6.14e-01 50 "SF2615" 9.35e-01 50 "SF2620" 4.92e-01 50 "yfhL" 8.98e-01 50 "nadB" 1.97e-01 50 "srmB" 1.53e-01 50 "yfiK" 4.86e-02 50 "SF2642" 9.94e-01 50 "trxC" 2.35e-01 50 "rluD" 6.81e-01 50 "yfiA" 6.14e-01 50 "pheA" 4.87e-01 50 "yfiL" 9.22e-01 50 "SF2671" 3.65e-01 50 "ppnK" 3.53e-01 50 "smpB" 6.14e-01 50 "SF2680" 2.35e-01 50 "SF2685" 9.99e-01 50 "SF2686" 6.14e-01 50 "SF2690" 8.98e-01 50 "SF2695" 8.74e-01 50 "SF2698" 9.99e-01 50 "SF2700" 1.53e-01 50 "nrdH" 9.63e-01 50 "proV" 4.87e-01 50 "srlA" 4.15e-01 50 "SF2733" 3.53e-01 50 "hypA" 1.00e+00 50 "mutS" 8.10e-02 50 "SF2755" 5.32e-02 50 "SF2756" 4.38e-02 50 "SF2760" 6.14e-02 50 "SF2763" 9.98e-01 50 "iap" 6.58e-01 50 "ygcM" 3.65e-01 50 "barA" 6.14e-01 50 "queF" 1.91e-03 22_[+1(4.45e-05)]_20 "sdaC" 4.92e-01 50 "fucP" 7.53e-01 50 "gcvB" 8.51e-01 50 "SF2824" 5.17e-01 50 "SF4504" 1.12e-01 50 "argA" 5.17e-01 50 "mutH" 4.05e-01 50 "galR" 9.96e-01 50 "lysR" 9.35e-01 50 "SF2855" 3.53e-01 50 "SF2856" 6.14e-01 50 "SF2862" 6.14e-01 50 "SF2864" 1.00e-01 50 "SF2868" 6.58e-01 50 "ygfU" 1.00e+00 50 "SF2875" 9.75e-01 50 "fldB" 6.81e-01 50 "ygfZ" 9.22e-01 50 "bglA" 4.05e-01 50 "ygfE" 6.58e-01 50 "iciA" 1.70e-01 50 "sbm" 7.90e-01 50 "SF2913" 2.51e-02 50 "SF2924" 9.96e-01 50 "yggG" 2.04e-02 50 "metK" 3.53e-01 50 "galP" 8.16e-01 50 "yggS" 4.26e-02 50 "SF2947" 1.00e+00 50 "SF2952" 3.67e-04 41_[+1(8.53e-06)]_1 "mutY" 3.82e-01 50 "yqgA" 2.35e-01 50 "SF2965" 7.53e-01 50 "SF2967" 8.98e-04 1_[+1(2.09e-05)]_41 "sigA" 9.30e-01 50 "SF2971" 3.11e-01 50 "SF2977" 3.53e-01 50 "SF2984" 3.53e-01 50 "SF2986" 8.51e-01 50 "SF2987" 4.87e-01 50 "SF2989" 8.16e-01 50 "SF2991" 1.20e-01 50 "SF2994" 1.00e-01 50 "SF2995" 6.58e-01 50 "SF3003" 8.51e-01 50 "SF3004" 7.53e-01 50 "SF3005" 3.53e-01 50 "glcC" 4.05e-01 50 "SF3021" 5.58e-01 50 "yghT" 4.87e-01 50 "SF3036" 7.09e-01 50 "SF3047" 3.53e-01 50 "yghA" 3.53e-02 50 "metC" 1.47e-02 50 "yqhD" 6.58e-01 50 "yqhE" 8.67e-01 50 "ygiX" 2.35e-01 50 "mdaB" 7.53e-01 50 "tolC" 5.17e-01 50 "ygiE" 4.92e-01 50 "SF3082" 7.09e-01 50 "SF3083" 7.53e-01 50 "yqiI" 7.53e-01 50 "ygiM" 4.26e-02 50 "ygiH" 9.90e-01 50 "ttdA" 7.09e-01 50 "rpsU" 1.70e-01 50 "SF4508" 6.14e-01 50 "yqjI" 5.58e-01 50 "ygjG" 4.87e-01 50 "ebgR" 5.17e-01 50 "ygjL" 1.53e-01 50 "ygjP" 3.16e-03 17_[+1(7.36e-05)]_25 "ygjT" 4.86e-02 50 "ygjU" 4.66e-01 50 "exuT" 3.11e-01 50 "yqjA" 8.98e-01 50 "yhaH" 2.51e-02 50 "yhaK" 7.53e-01 50 "tdcR" 4.26e-02 50 "yhaC" 2.35e-01 50 "yhaG" 7.90e-01 50 "agaZ" 9.94e-01 50 "agaC" 4.54e-01 50 "SF3181" 2.35e-01 50 "yraK" 6.14e-01 50 "yraM" 8.98e-01 50 "yhbO" 5.32e-02 50 "yhbQ" 3.11e-01 50 "yhbU" 3.53e-01 50 "argG" 6.58e-01 50 "yhbY" 6.14e-01 50 "dacB" 3.11e-01 50 "ispB" 7.09e-01 50 "nlp" 9.22e-01 50 "yrbG" 4.25e-01 50 "yrbL" 5.17e-01 50 "gltB" 9.70e-01 50 "yhcB" 1.00e-01 50 "degS" 1.70e-01 50 "argR" 3.53e-01 50 "yhcN" 7.53e-01 50 "yhcS" 1.70e-01 50 "yhdH" 3.82e-01 50 "accB" 4.25e-01 50 "yhdG" 7.90e-01 50 "SF3303" 2.63e-01 50 "yhdX" 3.67e-04 42_[+1(8.53e-06)] "yrdA" 1.53e-01 50 "def" 1.97e-01 50 "SF3354" 1.32e-01 50 "slyX" 2.04e-02 50 "yheS" 4.39e-01 50 "crp" 4.86e-02 50 "yhfC" 7.90e-01 50 "nirB" 6.81e-01 50 "yhfL" 7.53e-01 50 "yhfM" 8.51e-01 50 "mrcA" 8.67e-01 50 "yrfF" 9.81e-01 50 "pckA" 3.11e-01 50 "greB" 9.22e-01 50 "feoA" 6.58e-01 50 "yhgA" 5.32e-02 50 "yhgH" 2.04e-02 50 "gntT" 3.53e-01 50 "malT" 3.82e-01 50 "rtcR" 3.11e-01 50 "glpD" 5.32e-02 50 "yhgN" 3.53e-01 50 "yhhY" 4.87e-01 50 "yhhA" 4.54e-01 50 "SF3467" 1.70e-01 50 "yhhK" 9.48e-01 50 "rsmD" 4.15e-01 50 "yhhN" 7.90e-01 50 "yhhQ" 6.14e-01 50 "yhhT" 6.58e-01 50 "yhiM" 5.58e-01 50 "SF3509" 7.53e-01 50 "SF3512" 8.51e-01 50 "SF3515" 7.01e-02 50 "pitA" 1.00e+00 50 "uspA" 9.22e-01 50 "yhiP" 9.99e-01 50 "yhiR" 9.94e-01 50 "SF3534" 3.67e-04 27_[+1(8.53e-06)]_15 "SF3539" 7.53e-01 50 "slp" 3.67e-04 30_[+1(8.53e-06)]_12 "hdeD" 9.94e-01 50 "yhiE" 7.09e-01 50 "yhiU" 1.00e-01 50 "treF" 9.96e-01 50 "yhjC" 6.14e-01 50 "yhjE" 9.55e-01 50 "kdgK" 1.70e-01 50 "yhjS" 5.17e-01 50 "yhjV" 1.00e-01 50 "tag" 7.09e-01 50 "yiaD" 7.09e-01 50 "cspA" 8.51e-01 50 "gadA" 9.94e-01 50 "yhiX" 3.53e-01 50 "yhiW" 9.22e-01 50 "yiaH" 9.98e-01 50 "xylF" 8.98e-01 50 "malS" 4.05e-01 50 "yiaK" 6.58e-01 50 "SF3625a" 2.35e-01 50 "mtlA" 3.53e-01 50 "yibL" 7.09e-01 50 "SF3639" 9.81e-01 50 "SF3641" 7.90e-01 50 "lldP" 3.53e-01 50 "yibO" 2.35e-01 50 "rfaD" 9.22e-01 50 "kdtA" 3.53e-01 50 "dfp" 4.05e-01 50 "yicC" 2.35e-01 50 "dinD" 6.81e-01 50 "yicG" 4.92e-01 50 "gmk" 4.26e-02 50 "yicE" 9.22e-01 50 "SF4518" 9.94e-01 50 "SF3698" 2.35e-01 50 "shiA" 8.98e-01 50 "shiB" 1.53e-01 50 "SF3710" 2.63e-01 50 "shiE" 2.63e-01 50 "iucA" 1.70e-01 50 "SF3720" 7.90e-01 50 "lpfC" 9.86e-01 50 "SF3726" 9.22e-01 50 "pstS" 9.84e-01 50 "bglG" 7.09e-01 50 "yieC" 8.98e-01 50 "yieG" 4.26e-02 50 "SF3749" 6.58e-01 50 "SF3762" 3.82e-01 50 "yidB" 7.01e-02 50 "yidW" 4.05e-01 50 "yidR" 7.01e-02 50 "ibpA" 5.58e-01 50 "glvB" 5.32e-02 50 "yidK" 8.51e-01 50 "yidH" 9.30e-01 50 "ilvB" 2.63e-01 50 "yicO" 4.66e-01 50 "SF3801" 6.81e-01 50 "SF3805" 6.81e-01 50 "asnA" 9.98e-01 50 "SF3827" 8.51e-01 50 "rrsC" 6.81e-01 50 "yifE" 4.87e-01 50 "ilvL" 9.96e-01 50 "ilvC" 3.82e-01 50 "rep" 6.81e-01 50 "trxA" 7.90e-01 50 "cyaA" 1.00e-01 50 "yifL" 4.87e-01 50 "SF3892" 1.47e-02 50 "corA" 6.81e-01 50 "pldA" 1.00e+00 50 "pldB" 6.58e-01 50 "metE" 7.90e-01 50 "udp" 9.96e-01 50 "yigC" 4.05e-01 50 "pepQ" 7.90e-01 50 "rrsA" 6.81e-01 50 "yihD" 5.41e-02 50 "polA" 8.98e-01 50 "yihI" 7.90e-01 50 "yihK" 8.51e-01 50 "yihL" 8.16e-01 50 "yihV" 6.58e-01 50 "SF3963" 3.67e-04 39_[+1(8.53e-06)]_3 "yiiE" 8.51e-01 50 "yiiF" 1.97e-01 50 "fdhD" 7.90e-01 50 "rhaS" 4.39e-01 50 "sodA" 2.35e-01 50 "kdgT" 7.53e-01 50 "yiiM" 4.92e-01 50 "SF3992" 4.54e-01 50 "sbp" 7.90e-01 50 "yiiR" 3.82e-01 50 "yiiS" 7.53e-01 50 "yiiU" 3.11e-01 50 "rpmE" 9.35e-01 50 "metB" 8.98e-01 50 "metF" 4.39e-01 50 "katG" 9.22e-01 50 "frwC" 7.90e-01 50 "argC" 2.48e-01 50 "SF4039" 9.50e-01 50 "oxyR" 4.26e-02 50 "yijC" 6.14e-01 50 "btuB" 6.81e-01 50 "rrsB" 6.81e-01 50 "SF4537" 9.63e-01 50 "secE" 6.58e-01 50 "rplJ" 6.14e-01 50 "rpoB" 3.11e-01 50 "nudC" 1.70e-01 50 "hydH" 1.00e-01 50 "rrsE" 6.81e-01 50 "aceB" 8.98e-01 50 "metH" 8.98e-01 50 "yjbB" 6.14e-01 50 "yjbC" 4.26e-02 50 "yjdH" 1.70e-01 50 "dcuB" 8.51e-01 50 "melR" 8.67e-01 50 "adiY" 9.70e-01 50 "phnA" 9.55e-01 50 "yjcC" 9.63e-01 50 "soxR" 4.39e-01 50 "yjcD" 4.26e-02 50 "nrfA" 9.22e-01 50 "gltP" 2.26e-03 17_[+1(5.26e-05)]_25 "uvrA" 8.10e-02 50 "SF4150" 4.25e-01 50 "qor" 7.53e-01 50 "yjbK" 9.98e-01 50 "plsB" 9.30e-01 50 "malE" 3.11e-01 50 "xylE" 9.22e-01 50 "SF4175a" 1.57e-03 25_[+1(3.65e-05)]_17 "lysC" 7.90e-01 50 "SF4185" 8.98e-01 50 "yjiH" 1.53e-01 50 "yjiC" 8.51e-01 50 "gntP" 9.48e-01 50 "yjhA" 9.99e-01 50 "SF4216" 3.67e-04 3_[+1(8.53e-06)]_39 "SF4217" 6.14e-01 50 "yjgB" 7.01e-02 50 "pepA" 1.70e-01 50 "SF4233" 1.12e-01 50 "argI" 3.53e-01 50 "yjgI" 4.14e-01 50 "pyrL" 4.39e-01 50 "treR" 9.81e-01 50 "nrdD" 1.32e-01 50 "yjgA" 1.70e-01 50 "fbp" 3.53e-01 50 "ppa" 6.58e-01 50 "msrA" 7.90e-01 50 "ytfL" 3.65e-01 50 "ytfJ" 9.22e-01 50 "cpdB" 2.63e-01 50 "ytfG" 6.58e-01 50 "ytfB" 1.20e-01 50 "fabG" 9.35e-01 50 "SF4285" 2.63e-01 50 "SF4294" 4.05e-01 50 "groES" 9.48e-01 50 "efp" 3.11e-01 50 "yjeA" 7.53e-01 50 "SF4316a" 3.67e-04 35_[+1(8.53e-06)]_7 "yjeR" 1.00e-01 50 "SF4547" 3.11e-01 50 "yjeF" 1.12e-01 50 "yjeB" 4.15e-01 50 "yjfM" 4.87e-01 50 "yjfP" 6.58e-01 50 "sgaT" 1.00e+00 50 "rpsF" 1.00e-01 50 "SF4358" 9.44e-01 50 "SF4362" 6.14e-01 50 "hpcR" 1.00e+00 50 "yjjN" 3.53e-01 50 "SF4401" 4.25e-01 50 "holD" 3.53e-01 50 "osmY" 3.53e-01 50 "deoC" 7.53e-01 50 "serB" 6.81e-01 50 "slt" 5.52e-02 50 "gpmB" 4.25e-01 50 "creA" 9.22e-01 50 "lasT" 9.22e-01 50 "ospB" 1.20e-01 50 "phoN2/apy" 9.55e-01 50 "CP0013" 3.11e-01 50 "CP0018" 6.58e-01 50 "CP0021" 3.82e-01 50 "ospD1" 1.00e-01 50 "CP0023" 2.35e-01 50 "ipgB2" 1.00e-01 50 "CP0025" 1.00e-01 50 "CP0026" 4.26e-02 50 "CP0027" 2.63e-01 50 "parA" 6.58e-01 50 "CP0033" 3.11e-01 50 "CP0037" 2.35e-01 50 "CP0042" 9.35e-01 50 "CP0045" 1.53e-01 50 "CP0047" 4.26e-02 50 "ipaH2.5" 8.16e-01 50 "CP0056" 2.63e-01 50 "CP0060a" 3.11e-01 50 "CP0067" 1.12e-01 50 "CP0071" 3.11e-01 50 "CP0073" 5.58e-01 50 "ipaH7.8" 4.66e-01 50 "ipaH4.5" 1.97e-01 50 "CP0081" 5.41e-02 50 "ipgH" 3.11e-01 50 "CP0084" 3.16e-03 1_[+1(7.36e-05)]_41 "CP0089" 2.51e-03 28_[+1(5.84e-05)]_14 "CP0090" 2.35e-01 50 "CP0096" 5.41e-02 50 "CP0101" 1.97e-01 50 "CP0111" 7.53e-01 50 "ospC3" 1.12e-01 50 "CP0116" 3.11e-01 50 "CP0118" 9.99e-01 50 "CP0119" 1.70e-01 50 "ipaJ" 6.14e-01 50 "ipgD" 6.14e-01 50 "CP0159" 8.10e-02 50 "CP0163" 1.20e-01 50 "CP0169" 4.39e-01 50 "CP0172" 2.51e-02 50 "icsA/virG" 1.00e-01 50 "CP0183" 3.11e-01 50 "CP0184" 3.53e-01 50 "phoN1" 3.53e-01 50 "yccB" 1.97e-01 50 "CP0211" 6.14e-02 50 "CP0217" 7.90e-01 50 "CP0221" 4.05e-01 50 "CP0222" 9.44e-01 50 "ccdA" 5.32e-02 50 "ipaH9.8" 3.53e-02 50 "ospG" 6.81e-01 50 "CP0230" 6.14e-01 50 "CP0232" 9.22e-01 50 "CP0233" 1.70e-01 50 "shf" 3.53e-02 50 "traD" 2.48e-01 50 "CP0247" 1.20e-01 50 "CP0256" 7.53e-01 50 "yihA" 7.90e-01 50 "repB" 2.26e-03 27_[+1(5.26e-05)]_15 "tap" 3.82e-01 50 "CP0261" 3.53e-02 50 "CP0264" 1.20e-01 50 "CP0267" 7.53e-01 50 "CP0270" 1.97e-01 50 "icsP/sopA" 9.99e-01 50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (1) found. ******************************************************************************** CPU: kodomo ********************************************************************************