******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= proms.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ "SF0005" 1.0000 50 "SF0008" 1.0000 50 "dnaK" 1.0000 50 "nhaA" 1.0000 50 "SF0020a" 1.0000 50 "slpA" 1.0000 50 "carA" 1.0000 50 "caiF" 1.0000 50 "fixA" 1.0000 50 "fixC" 1.0000 50 "djlA" 1.0000 50 "araC" 1.0000 50 "yabM" 1.0000 50 "leuO" 1.0000 50 "ilvI" 1.0000 50 "yabB" 1.0000 50 "guaC" 1.0000 50 "ampD" 1.0000 50 "pdhR" 1.0000 50 "lpdA" 1.0000 50 "acnB" 1.0000 50 "yacK" 1.0000 50 "hpt" 1.0000 50 "yadG" 1.0000 50 "yadD" 1.0000 50 "insB" 1.0000 50 "hrpB" 1.0000 50 "fhuA" 1.0000 50 "yadQ" 1.0000 50 "SF0152" 1.0000 50 "htrA" 1.0000 50 "rpsB" 1.0000 50 "tsf" 1.0000 50 "frr" 1.0000 50 "yaeQ" 1.0000 50 "yaeD" 1.0000 50 "rrsH" 1.0000 50 "SF4438" 1.0000 50 "yafD" 1.0000 50 "yafE" 1.0000 50 "yafS" 1.0000 50 "dnaQ" 1.0000 50 "SF0209" 1.0000 50 "SF0215" 1.0000 50 "ddl" 1.0000 50 "SF0234" 1.0000 50 "yaiH" 1.0000 50 "insA" 1.0000 50 "hemB" 1.0000 50 "ykgH" 1.0000 50 "ykfE" 1.0000 50 "gmhA" 1.0000 50 "yafJ" 1.0000 50 "yafL" 1.0000 50 "mbhA" 1.0000 50 "SF0283" 1.0000 50 "gpt" 1.0000 50 "SF0302" 1.0000 50 "gtrAI" 1.0000 50 "SF0309" 1.0000 50 "SF0314" 1.0000 50 "SF0315" 1.0000 50 "adrA" 1.0000 50 "yaiI" 1.0000 50 "aroM" 1.0000 50 "SF0328" 1.0000 50 "yajF" 1.0000 50 "phoB" 1.0000 50 "brnQ" 1.0000 50 "queA" 1.0000 50 "nrdR" 1.0000 50 "SF0360" 1.0000 50 "yajQ" 1.0000 50 "bolA" 1.0000 50 "clpP" 1.0000 50 "hupB" 1.0000 50 "cof" 1.0000 50 "ybaY" 1.0000 50 "ffs" 1.0000 50 "acrR" 1.0000 50 "ybaN" 1.0000 50 "gsk" 1.0000 50 "ushA" 1.0000 50 "ybaQ" 1.0000 50 "ybaS" 1.0000 50 "ybbL" 1.0000 50 "ybbA" 1.0000 50 "ybbT" 1.0000 50 "ylbF" 1.0000 50 "cysS" 1.0000 50 "sfmA" 1.0000 50 "sfmC" 1.0000 50 "SF4444" 1.0000 50 "ylcB" 1.0000 50 "SF0478" 1.0000 50 "ybdE" 1.0000 50 "SF0489" 1.0000 50 "SF0494" 1.0000 50 "fes" 1.0000 50 "entF" 1.0000 50 "fepE" 1.0000 50 "ybdA" 1.0000 50 "entC" 1.0000 50 "ybdL" 1.0000 50 "SF0519" 1.0000 50 "ahpC" 1.0000 50 "ahpF" 1.0000 50 "ybdR" 1.0000 50 "ybhA" 1.0000 50 "modE" 1.0000 50 "galE" 1.0000 50 "gpmA" 1.0000 50 "SF0551" 1.0000 50 "farR" 1.0000 50 "gltA" 1.0000 50 "ybgD" 1.0000 50 "ybgH" 1.0000 50 "SF0591" 1.0000 50 "kdpA" 1.0000 50 "kdpD" 1.0000 50 "speF" 1.0000 50 "ybfF" 1.0000 50 "fur" 1.0000 50 "nagB" 1.0000 50 "asnB" 1.0000 50 "SF4448" 1.0000 50 "yleA" 1.0000 50 "ybeJ" 1.0000 50 "ybeT" 1.0000 50 "ybeQ" 1.0000 50 "leuS" 1.0000 50 "ybeB" 1.0000 50 "ybeF" 1.0000 50 "lipA" 1.0000 50 "ccrB" 1.0000 50 "dcuC" 1.0000 50 "SF0662" 1.0000 50 "SF0676" 1.0000 50 "SF0677" 1.0000 50 "SF0682" 1.0000 50 "SF0684" 1.0000 50 "ybcQ" 1.0000 50 "SF0689" 1.0000 50 "SF0697" 1.0000 50 "SF0701" 1.0000 50 "bioB" 1.0000 50 "uvrB" 1.0000 50 "moaA" 1.0000 50 "ybhM" 1.0000 50 "ybhQ" 1.0000 50 "rhlE" 1.0000 50 "dinG" 1.0000 50 "SF0755" 1.0000 50 "ybiN" 1.0000 50 "ompX" 1.0000 50 "SF0767" 1.0000 50 "ybiT" 1.0000 50 "mipB" 1.0000 50 "ybiK" 1.0000 50 "bssR" 1.0000 50 "SF0789" 1.0000 50 "cmr" 1.0000 50 "SF0799" 1.0000 50 "ybjM" 1.0000 50 "ybjC" 1.0000 50 "mdaA" 1.0000 50 "potF" 1.0000 50 "SF0820" 1.0000 50 "SF0821" 1.0000 50 "ybjD" 1.0000 50 "SF0837" 1.0000 50 "clpS" 1.0000 50 "lrp" 1.0000 50 "dmsA" 1.0000 50 "ycaD" 1.0000 50 "SF0858" 1.0000 50 "SF0865" 1.0000 50 "SF0876" 1.0000 50 "SF0877" 1.0000 50 "SF0880" 1.0000 50 "SF0881" 1.0000 50 "SF0886" 1.0000 50 "ybhE" 1.0000 50 "ybhH" 1.0000 50 "SF0901" 1.0000 50 "smtA" 1.0000 50 "ycbB" 1.0000 50 "SF0925a" 1.0000 50 "pepN" 1.0000 50 "ycbS" 1.0000 50 "rlmL" 1.0000 50 "SF953a" 1.0000 50 "ycbG" 1.0000 50 "SF0959" 1.0000 50 "helD" 1.0000 50 "SF0967" 1.0000 50 "SF0969" 1.0000 50 "hyaA" 1.0000 50 "appC" 1.0000 50 "cspG" 1.0000 50 "torT" 1.0000 50 "torC" 1.0000 50 "yccE" 1.0000 50 "agp" 1.0000 50 "ycdC" 1.0000 50 "SF1019" 1.0000 50 "SF1022" 1.0000 50 "SF1025" 1.0000 50 "ycdW" 1.0000 50 "csgB" 1.0000 50 "SF1037" 1.0000 50 "csgC" 1.0000 50 "mdoG" 1.0000 50 "SF1047" 1.0000 50 "SF1051" 1.0000 50 "SF1054" 1.0000 50 "SF1056" 1.0000 50 "SF1058" 1.0000 50 "yceA" 1.0000 50 "rimJ" 1.0000 50 "flgB" 1.0000 50 "SF1089" 1.0000 50 "yceD" 1.0000 50 "acpP" 1.0000 50 "ptsG" 1.0000 50 "ycfF" 1.0000 50 "ndh" 1.0000 50 "ycfJ" 1.0000 50 "ycfR" 1.0000 50 "ycfU" 1.0000 50 "pepT" 1.0000 50 "SF1131" 1.0000 50 "SF1133a" 1.0000 50 "SF1136" 1.0000 50 "SF1137" 1.0000 50 "SF1138" 1.0000 50 "icdA" 1.0000 50 "SF1156" 1.0000 50 "SF1156b" 1.0000 50 "SF1160" 1.0000 50 "SF1166" 1.0000 50 "ycgL" 1.0000 50 "umuD" 1.0000 50 "fadR" 1.0000 50 "dadA" 1.0000 50 "mltE" 1.0000 50 "SF1185" 1.0000 50 "ymgE" 1.0000 50 "SF1195" 1.0000 50 "SF1198" 1.0000 50 "SF1204" 1.0000 50 "SF1205a" 1.0000 50 "ychH" 1.0000 50 "hemA" 1.0000 50 "chaB" 1.0000 50 "ychP" 1.0000 50 "narK" 1.0000 50 "narG" 1.0000 50 "ychK" 1.0000 50 "galU" 1.0000 50 "tdk" 1.0000 50 "ychE" 1.0000 50 "oppA" 1.0000 50 "SF1252" 1.0000 50 "tonB" 1.0000 50 "yciD" 1.0000 50 "yciV" 1.0000 50 "sohB" 1.0000 50 "topA" 1.0000 50 "cysB" 1.0000 50 "SF1278" 1.0000 50 "acnA" 1.0000 50 "pgpB" 1.0000 50 "puuD" 1.0000 50 "pspA" 1.0000 50 "SF1316" 1.0000 50 "ycjX" 1.0000 50 "ycjG" 1.0000 50 "SF1335" 1.0000 50 "ycjZ" 1.0000 50 "SF1344" 1.0000 50 "SF1350a" 1.0000 50 "SF1350b" 1.0000 50 "SF1353" 1.0000 50 "SF1356" 1.0000 50 "SF1359" 1.0000 50 "SF1374" 1.0000 50 "SF1382" 1.0000 50 "pphA" 1.0000 50 "SF1393" 1.0000 50 "SF1398" 1.0000 50 "SF1400" 1.0000 50 "SF1402" 1.0000 50 "yoaE" 1.0000 50 "SF1417" 1.0000 50 "SF1420" 1.0000 50 "SF1428" 1.0000 50 "yoaF" 1.0000 50 "yeaM" 1.0000 50 "SF1436" 1.0000 50 "SF1439" 1.0000 50 "yeaF" 1.0000 50 "yeaA" 1.0000 50 "SF1447" 1.0000 50 "ydjA" 1.0000 50 "SF1463" 1.0000 50 "SF1465" 1.0000 50 "SF1467" 1.0000 50 "SF1471" 1.0000 50 "cstC" 1.0000 50 "spy" 1.0000 50 "SF1484" 1.0000 50 "osmE" 1.0000 50 "celA" 1.0000 50 "celF" 1.0000 50 "SF1497" 1.0000 50 "ydjO" 1.0000 50 "SF1504" 1.0000 50 "SF1508" 1.0000 50 "thrS" 1.0000 50 "pheS" 1.0000 50 "SF1524" 1.0000 50 "ppsA" 1.0000 50 "SF1534" 1.0000 50 "ycgW" 1.0000 50 "SF1552" 1.0000 50 "dcp" 1.0000 50 "SF1559" 1.0000 50 "ydeD" 1.0000 50 "ydeB" 1.0000 50 "SF1568" 1.0000 50 "SF1571" 1.0000 50 "uxaB" 1.0000 50 "SF1575" 1.0000 50 "SF1583" 1.0000 50 "SF1593" 1.0000 50 "SF1596" 1.0000 50 "SF1607" 1.0000 50 "ynfM" 1.0000 50 "asr" 1.0000 50 "SF1619" 1.0000 50 "tqsA" 1.0000 50 "SF1625" 1.0000 50 "rstA" 1.0000 50 "SF1631" 1.0000 50 "manA" 1.0000 50 "malX" 1.0000 50 "SF1649a" 1.0000 50 "SF1650" 1.0000 50 "tppB" 1.0000 50 "slyB" 1.0000 50 "SF1670" 1.0000 50 "SF1676" 1.0000 50 "ydhO" 1.0000 50 "SF1686" 1.0000 50 "ydhC" 1.0000 50 "cfa" 1.0000 50 "ydhE" 1.0000 50 "SF4469" 1.0000 50 "pykF" 1.0000 50 "lpp" 1.0000 50 "SF1709" 1.0000 50 "SF1718" 1.0000 50 "SF1719" 1.0000 50 "SF1721" 1.0000 50 "ydeN" 1.0000 50 "yddA" 1.0000 50 "SF1731" 1.0000 50 "gadB" 1.0000 50 "yddV" 1.0000 50 "SF1739" 1.0000 50 "sfcA" 1.0000 50 "yddG" 1.0000 50 "SF1755" 1.0000 50 "narU" 1.0000 50 "SF1769" 1.0000 50 "SF1777" 1.0000 50 "SF1778a" 1.0000 50 "SF1782" 1.0000 50 "SF1788" 1.0000 50 "SF1790" 1.0000 50 "SF1792a" 1.0000 50 "SF1795" 1.0000 50 "SF1799" 1.0000 50 "acpD" 1.0000 50 "SF1804" 1.0000 50 "ydbH" 1.0000 50 "ydbK" 1.0000 50 "SF1823" 1.0000 50 "SF1828" 1.0000 50 "SF1831" 1.0000 50 "SF1834" 1.0000 50 "SF1834a" 1.0000 50 "SF1840" 1.0000 50 "SF1843" 1.0000 50 "SF1847" 1.0000 50 "SF1849" 1.0000 50 "holE" 1.0000 50 "purT" 1.0000 50 "yebK" 1.0000 50 "znuC" 1.0000 50 "SF1872" 1.0000 50 "yecD" 1.0000 50 "SF1879" 1.0000 50 "ipaH_4" 1.0000 50 "SF1897" 1.0000 50 "SF1900" 1.0000 50 "SF1904" 1.0000 50 "yecE" 1.0000 50 "argS" 1.0000 50 "SF1927" 1.0000 50 "SF1928" 1.0000 50 "yecI" 1.0000 50 "SF1950" 1.0000 50 "tyrP" 1.0000 50 "yecF" 1.0000 50 "fliD" 1.0000 50 "yedE" 1.0000 50 "SF1976" 1.0000 50 "nmpC" 1.0000 50 "fliF" 1.0000 50 "rcsA" 1.0000 50 "SF1998" 1.0000 50 "SF1999" 1.0000 50 "yedA" 1.0000 50 "SF2009" 1.0000 50 "SF2017" 1.0000 50 "SF2020" 1.0000 50 "SF2021" 1.0000 50 "ipaH_5" 1.0000 50 "SF2042a" 1.0000 50 "SF2045" 1.0000 50 "SF2046" 1.0000 50 "SF2051" 1.0000 50 "amn" 1.0000 50 "SF2054" 1.0000 50 "SF4484" 1.0000 50 "SF4485" 1.0000 50 "SF2064" 1.0000 50 "SF2065" 1.0000 50 "SF2066" 1.0000 50 "SF2069" 1.0000 50 "sbcB" 1.0000 50 "hisG" 1.0000 50 "yegH" 1.0000 50 "yegE" 1.0000 50 "yegD" 1.0000 50 "SF2138" 1.0000 50 "SF2149" 1.0000 50 "SF2160" 1.0000 50 "SF2162" 1.0000 50 "yohM" 1.0000 50 "yohN" 1.0000 50 "metG" 1.0000 50 "SF2181" 1.0000 50 "molR_2" 1.0000 50 "yehI" 1.0000 50 "yehL" 1.0000 50 "yehR" 1.0000 50 "SF2199" 1.0000 50 "SF2200" 1.0000 50 "SF2201" 1.0000 50 "ipaH_6" 1.0000 50 "SF2211" 1.0000 50 "dld" 1.0000 50 "yohD" 1.0000 50 "yohJ" 1.0000 50 "yeiG" 1.0000 50 "yeiH" 1.0000 50 "yeiL" 1.0000 50 "yeiO" 1.0000 50 "yeiP" 1.0000 50 "yeiQ" 1.0000 50 "spr" 1.0000 50 "yejH" 1.0000 50 "yejL" 1.0000 50 "narP" 1.0000 50 "eco" 1.0000 50 "micF" 1.0000 50 "yojN" 1.0000 50 "ubiG" 1.0000 50 "SF2314" 1.0000 50 "nrdA" 1.0000 50 "yfaH" 1.0000 50 "glpA" 1.0000 50 "yfaO" 1.0000 50 "SF2332" 1.0000 50 "SF2337" 1.0000 50 "elaC" 1.0000 50 "yfbL" 1.0000 50 "SF2366" 1.0000 50 "ackA" 1.0000 50 "yfcG" 1.0000 50 "flk" 1.0000 50 "SF2400" 1.0000 50 "SF2406" 1.0000 50 "fadL" 1.0000 50 "SF2422" 1.0000 50 "SF2425" 1.0000 50 "SF2430" 1.0000 50 "SF2432" 1.0000 50 "evgA" 1.0000 50 "SF2442a" 1.0000 50 "ddg" 1.0000 50 "SF2446" 1.0000 50 "SF2455" 1.0000 50 "nupC" 1.0000 50 "yfeC" 1.0000 50 "SF4490" 1.0000 50 "flxA" 1.0000 50 "yfeH" 1.0000 50 "cysZ" 1.0000 50 "ptsH" 1.0000 50 "yfeK" 1.0000 50 "murQ" 1.0000 50 "amiA" 1.0000 50 "SF2493" 1.0000 50 "SF2494" 1.0000 50 "SF2498" 1.0000 50 "SF2499" 1.0000 50 "talA" 1.0000 50 "narQ" 1.0000 50 "acrD" 1.0000 50 "yffB" 1.0000 50 "gcvR" 1.0000 50 "hyfA" 1.0000 50 "SF2538" 1.0000 50 "purM" 1.0000 50 "SF2547" 1.0000 50 "SF2550" 1.0000 50 "SF2551" 1.0000 50 "xseA" 1.0000 50 "sseA" 1.0000 50 "suhB" 1.0000 50 "hcaA1" 1.0000 50 "yphH" 1.0000 50 "hmpA" 1.0000 50 "yfhD" 1.0000 50 "yfhH" 1.0000 50 "ipaH_7" 1.0000 50 "SF2615" 1.0000 50 "SF2620" 1.0000 50 "yfhL" 1.0000 50 "nadB" 1.0000 50 "srmB" 1.0000 50 "yfiK" 1.0000 50 "SF2642" 1.0000 50 "trxC" 1.0000 50 "rluD" 1.0000 50 "yfiA" 1.0000 50 "pheA" 1.0000 50 "yfiL" 1.0000 50 "SF2671" 1.0000 50 "ppnK" 1.0000 50 "smpB" 1.0000 50 "SF2680" 1.0000 50 "SF2685" 1.0000 50 "SF2686" 1.0000 50 "SF2690" 1.0000 50 "SF2695" 1.0000 50 "SF2698" 1.0000 50 "SF2700" 1.0000 50 "nrdH" 1.0000 50 "proV" 1.0000 50 "srlA" 1.0000 50 "SF2733" 1.0000 50 "hypA" 1.0000 50 "mutS" 1.0000 50 "SF2755" 1.0000 50 "SF2756" 1.0000 50 "SF2760" 1.0000 50 "SF2763" 1.0000 50 "iap" 1.0000 50 "ygcM" 1.0000 50 "barA" 1.0000 50 "queF" 1.0000 50 "sdaC" 1.0000 50 "fucP" 1.0000 50 "gcvB" 1.0000 50 "SF2824" 1.0000 50 "SF4504" 1.0000 50 "argA" 1.0000 50 "mutH" 1.0000 50 "galR" 1.0000 50 "lysR" 1.0000 50 "SF2855" 1.0000 50 "SF2856" 1.0000 50 "SF2862" 1.0000 50 "SF2864" 1.0000 50 "SF2868" 1.0000 50 "ygfU" 1.0000 50 "SF2875" 1.0000 50 "fldB" 1.0000 50 "ygfZ" 1.0000 50 "bglA" 1.0000 50 "ygfE" 1.0000 50 "iciA" 1.0000 50 "sbm" 1.0000 50 "SF2913" 1.0000 50 "SF2924" 1.0000 50 "yggG" 1.0000 50 "metK" 1.0000 50 "galP" 1.0000 50 "yggS" 1.0000 50 "SF2947" 1.0000 50 "SF2952" 1.0000 50 "mutY" 1.0000 50 "yqgA" 1.0000 50 "SF2965" 1.0000 50 "SF2967" 1.0000 50 "sigA" 1.0000 50 "SF2971" 1.0000 50 "SF2977" 1.0000 50 "SF2984" 1.0000 50 "SF2986" 1.0000 50 "SF2987" 1.0000 50 "SF2989" 1.0000 50 "SF2991" 1.0000 50 "SF2994" 1.0000 50 "SF2995" 1.0000 50 "SF3003" 1.0000 50 "SF3004" 1.0000 50 "SF3005" 1.0000 50 "glcC" 1.0000 50 "SF3021" 1.0000 50 "yghT" 1.0000 50 "SF3036" 1.0000 50 "SF3047" 1.0000 50 "yghA" 1.0000 50 "metC" 1.0000 50 "yqhD" 1.0000 50 "yqhE" 1.0000 50 "ygiX" 1.0000 50 "mdaB" 1.0000 50 "tolC" 1.0000 50 "ygiE" 1.0000 50 "SF3082" 1.0000 50 "SF3083" 1.0000 50 "yqiI" 1.0000 50 "ygiM" 1.0000 50 "ygiH" 1.0000 50 "ttdA" 1.0000 50 "rpsU" 1.0000 50 "SF4508" 1.0000 50 "yqjI" 1.0000 50 "ygjG" 1.0000 50 "ebgR" 1.0000 50 "ygjL" 1.0000 50 "ygjP" 1.0000 50 "ygjT" 1.0000 50 "ygjU" 1.0000 50 "exuT" 1.0000 50 "yqjA" 1.0000 50 "yhaH" 1.0000 50 "yhaK" 1.0000 50 "tdcR" 1.0000 50 "yhaC" 1.0000 50 "yhaG" 1.0000 50 "agaZ" 1.0000 50 "agaC" 1.0000 50 "SF3181" 1.0000 50 "yraK" 1.0000 50 "yraM" 1.0000 50 "yhbO" 1.0000 50 "yhbQ" 1.0000 50 "yhbU" 1.0000 50 "argG" 1.0000 50 "yhbY" 1.0000 50 "dacB" 1.0000 50 "ispB" 1.0000 50 "nlp" 1.0000 50 "yrbG" 1.0000 50 "yrbL" 1.0000 50 "gltB" 1.0000 50 "yhcB" 1.0000 50 "degS" 1.0000 50 "argR" 1.0000 50 "yhcN" 1.0000 50 "yhcS" 1.0000 50 "yhdH" 1.0000 50 "accB" 1.0000 50 "yhdG" 1.0000 50 "SF3303" 1.0000 50 "yhdX" 1.0000 50 "yrdA" 1.0000 50 "def" 1.0000 50 "SF3354" 1.0000 50 "slyX" 1.0000 50 "yheS" 1.0000 50 "crp" 1.0000 50 "yhfC" 1.0000 50 "nirB" 1.0000 50 "yhfL" 1.0000 50 "yhfM" 1.0000 50 "mrcA" 1.0000 50 "yrfF" 1.0000 50 "pckA" 1.0000 50 "greB" 1.0000 50 "feoA" 1.0000 50 "yhgA" 1.0000 50 "yhgH" 1.0000 50 "gntT" 1.0000 50 "malT" 1.0000 50 "rtcR" 1.0000 50 "glpD" 1.0000 50 "yhgN" 1.0000 50 "yhhY" 1.0000 50 "yhhA" 1.0000 50 "SF3467" 1.0000 50 "yhhK" 1.0000 50 "rsmD" 1.0000 50 "yhhN" 1.0000 50 "yhhQ" 1.0000 50 "yhhT" 1.0000 50 "yhiM" 1.0000 50 "SF3509" 1.0000 50 "SF3512" 1.0000 50 "SF3515" 1.0000 50 "pitA" 1.0000 50 "uspA" 1.0000 50 "yhiP" 1.0000 50 "yhiR" 1.0000 50 "SF3534" 1.0000 50 "SF3539" 1.0000 50 "slp" 1.0000 50 "hdeD" 1.0000 50 "yhiE" 1.0000 50 "yhiU" 1.0000 50 "treF" 1.0000 50 "yhjC" 1.0000 50 "yhjE" 1.0000 50 "kdgK" 1.0000 50 "yhjS" 1.0000 50 "yhjV" 1.0000 50 "tag" 1.0000 50 "yiaD" 1.0000 50 "cspA" 1.0000 50 "gadA" 1.0000 50 "yhiX" 1.0000 50 "yhiW" 1.0000 50 "yiaH" 1.0000 50 "xylF" 1.0000 50 "malS" 1.0000 50 "yiaK" 1.0000 50 "SF3625a" 1.0000 50 "mtlA" 1.0000 50 "yibL" 1.0000 50 "SF3639" 1.0000 50 "SF3641" 1.0000 50 "lldP" 1.0000 50 "yibO" 1.0000 50 "rfaD" 1.0000 50 "kdtA" 1.0000 50 "dfp" 1.0000 50 "yicC" 1.0000 50 "dinD" 1.0000 50 "yicG" 1.0000 50 "gmk" 1.0000 50 "yicE" 1.0000 50 "SF4518" 1.0000 50 "SF3698" 1.0000 50 "shiA" 1.0000 50 "shiB" 1.0000 50 "SF3710" 1.0000 50 "shiE" 1.0000 50 "iucA" 1.0000 50 "SF3720" 1.0000 50 "lpfC" 1.0000 50 "SF3726" 1.0000 50 "pstS" 1.0000 50 "bglG" 1.0000 50 "yieC" 1.0000 50 "yieG" 1.0000 50 "SF3749" 1.0000 50 "SF3762" 1.0000 50 "yidB" 1.0000 50 "yidW" 1.0000 50 "yidR" 1.0000 50 "ibpA" 1.0000 50 "glvB" 1.0000 50 "yidK" 1.0000 50 "yidH" 1.0000 50 "ilvB" 1.0000 50 "yicO" 1.0000 50 "SF3801" 1.0000 50 "SF3805" 1.0000 50 "asnA" 1.0000 50 "SF3827" 1.0000 50 "rrsC" 1.0000 50 "yifE" 1.0000 50 "ilvL" 1.0000 50 "ilvC" 1.0000 50 "rep" 1.0000 50 "trxA" 1.0000 50 "cyaA" 1.0000 50 "yifL" 1.0000 50 "SF3892" 1.0000 50 "corA" 1.0000 50 "pldA" 1.0000 50 "pldB" 1.0000 50 "metE" 1.0000 50 "udp" 1.0000 50 "yigC" 1.0000 50 "pepQ" 1.0000 50 "rrsA" 1.0000 50 "yihD" 1.0000 50 "polA" 1.0000 50 "yihI" 1.0000 50 "yihK" 1.0000 50 "yihL" 1.0000 50 "yihV" 1.0000 50 "SF3963" 1.0000 50 "yiiE" 1.0000 50 "yiiF" 1.0000 50 "fdhD" 1.0000 50 "rhaS" 1.0000 50 "sodA" 1.0000 50 "kdgT" 1.0000 50 "yiiM" 1.0000 50 "SF3992" 1.0000 50 "sbp" 1.0000 50 "yiiR" 1.0000 50 "yiiS" 1.0000 50 "yiiU" 1.0000 50 "rpmE" 1.0000 50 "metB" 1.0000 50 "metF" 1.0000 50 "katG" 1.0000 50 "frwC" 1.0000 50 "argC" 1.0000 50 "SF4039" 1.0000 50 "oxyR" 1.0000 50 "yijC" 1.0000 50 "btuB" 1.0000 50 "rrsB" 1.0000 50 "SF4537" 1.0000 50 "secE" 1.0000 50 "rplJ" 1.0000 50 "rpoB" 1.0000 50 "nudC" 1.0000 50 "hydH" 1.0000 50 "rrsE" 1.0000 50 "aceB" 1.0000 50 "metH" 1.0000 50 "yjbB" 1.0000 50 "yjbC" 1.0000 50 "yjdH" 1.0000 50 "dcuB" 1.0000 50 "melR" 1.0000 50 "adiY" 1.0000 50 "phnA" 1.0000 50 "yjcC" 1.0000 50 "soxR" 1.0000 50 "yjcD" 1.0000 50 "nrfA" 1.0000 50 "gltP" 1.0000 50 "uvrA" 1.0000 50 "SF4150" 1.0000 50 "qor" 1.0000 50 "yjbK" 1.0000 50 "plsB" 1.0000 50 "malE" 1.0000 50 "xylE" 1.0000 50 "SF4175a" 1.0000 50 "lysC" 1.0000 50 "SF4185" 1.0000 50 "yjiH" 1.0000 50 "yjiC" 1.0000 50 "gntP" 1.0000 50 "yjhA" 1.0000 50 "SF4216" 1.0000 50 "SF4217" 1.0000 50 "yjgB" 1.0000 50 "pepA" 1.0000 50 "SF4233" 1.0000 50 "argI" 1.0000 50 "yjgI" 1.0000 50 "pyrL" 1.0000 50 "treR" 1.0000 50 "nrdD" 1.0000 50 "yjgA" 1.0000 50 "fbp" 1.0000 50 "ppa" 1.0000 50 "msrA" 1.0000 50 "ytfL" 1.0000 50 "ytfJ" 1.0000 50 "cpdB" 1.0000 50 "ytfG" 1.0000 50 "ytfB" 1.0000 50 "fabG" 1.0000 50 "SF4285" 1.0000 50 "SF4294" 1.0000 50 "groES" 1.0000 50 "efp" 1.0000 50 "yjeA" 1.0000 50 "SF4316a" 1.0000 50 "yjeR" 1.0000 50 "SF4547" 1.0000 50 "yjeF" 1.0000 50 "yjeB" 1.0000 50 "yjfM" 1.0000 50 "yjfP" 1.0000 50 "sgaT" 1.0000 50 "rpsF" 1.0000 50 "SF4358" 1.0000 50 "SF4362" 1.0000 50 "hpcR" 1.0000 50 "yjjN" 1.0000 50 "SF4401" 1.0000 50 "holD" 1.0000 50 "osmY" 1.0000 50 "deoC" 1.0000 50 "serB" 1.0000 50 "slt" 1.0000 50 "gpmB" 1.0000 50 "creA" 1.0000 50 "lasT" 1.0000 50 "ospB" 1.0000 50 "phoN2/apy" 1.0000 50 "CP0013" 1.0000 50 "CP0018" 1.0000 50 "CP0021" 1.0000 50 "ospD1" 1.0000 50 "CP0023" 1.0000 50 "ipgB2" 1.0000 50 "CP0025" 1.0000 50 "CP0026" 1.0000 50 "CP0027" 1.0000 50 "parA" 1.0000 50 "CP0033" 1.0000 50 "CP0037" 1.0000 50 "CP0042" 1.0000 50 "CP0045" 1.0000 50 "CP0047" 1.0000 50 "ipaH2.5" 1.0000 50 "CP0056" 1.0000 50 "CP0060a" 1.0000 50 "CP0067" 1.0000 50 "CP0071" 1.0000 50 "CP0073" 1.0000 50 "ipaH7.8" 1.0000 50 "ipaH4.5" 1.0000 50 "CP0081" 1.0000 50 "ipgH" 1.0000 50 "CP0084" 1.0000 50 "CP0089" 1.0000 50 "CP0090" 1.0000 50 "CP0096" 1.0000 50 "CP0101" 1.0000 50 "CP0111" 1.0000 50 "ospC3" 1.0000 50 "CP0116" 1.0000 50 "CP0118" 1.0000 50 "CP0119" 1.0000 50 "ipaJ" 1.0000 50 "ipgD" 1.0000 50 "CP0159" 1.0000 50 "CP0163" 1.0000 50 "CP0169" 1.0000 50 "CP0172" 1.0000 50 "icsA/virG" 1.0000 50 "CP0183" 1.0000 50 "CP0184" 1.0000 50 "phoN1" 1.0000 50 "yccB" 1.0000 50 "CP0211" 1.0000 50 "CP0217" 1.0000 50 "CP0221" 1.0000 50 "CP0222" 1.0000 50 "ccdA" 1.0000 50 "ipaH9.8" 1.0000 50 "ospG" 1.0000 50 "CP0230" 1.0000 50 "CP0232" 1.0000 50 "CP0233" 1.0000 50 "shf" 1.0000 50 "traD" 1.0000 50 "CP0247" 1.0000 50 "CP0256" 1.0000 50 "yihA" 1.0000 50 "repB" 1.0000 50 "tap" 1.0000 50 "CP0261" 1.0000 50 "CP0264" 1.0000 50 "CP0267" 1.0000 50 "CP0270" 1.0000 50 "icsP/sopA" 1.0000 50 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme proms.fasta -dna -nmotifs 1 -minw 5 -maxw 8 model: mod= zoops nmotifs= 1 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 5 maxw= 8 nsites: minsites= 2 maxsites= 987 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 49350 N= 987 sample: seed= 0 hsfrac= 0 searchsize= 49350 norand= no csites= 1000 Letter frequencies in dataset: A 0.306 C 0.206 G 0.215 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.306 C 0.206 G 0.215 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MAGGAGH MEME-1 width = 7 sites = 104 llr = 828 E-value = 4.1e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7a::a:3 pos.-specific C 3:::::4 probability G ::aa:a: matrix T ::::::2 bits 2.3 ** * 2.0 ** * 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (11.5 bits) 0.9 ****** 0.7 ****** 0.5 ******* 0.2 ******* 0.0 ------- Multilevel AAGGAGC consensus C A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------- "rpsF" 38 5.87e-05 AATAATCCGT AAGGAGC AATTCG "yjgA" 39 5.87e-05 CTCTTTTTTT AAGGAGC CTGAG "yihD" 38 5.87e-05 TCTCAAGAGT AAGGAGC ATTACT "SF3801" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "yidH" 40 5.87e-05 TGAAATTGCA AAGGAGC AACA "SF3749" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "yhiE" 39 5.87e-05 GATAACGGCT AAGGAGC AAGTT "pckA" 38 5.87e-05 CATATTGGCT AAGGAGC AGTGAA "SF2994" 39 5.87e-05 AACCACCGAT AAGGAGC AAAGT "SF2756" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF2698" 38 5.87e-05 CGCTTTTATT AAGGAGC ATTAGC "SF2620" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF2547" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "hyfA" 40 5.87e-05 TATCATTTTC AAGGAGC CGAC "cysZ" 33 5.87e-05 GATTGGTCAA AAGGAGC TCATCCTGAT "yeiG" 39 5.87e-05 ACAACACAAC AAGGAGC CACGC "SF2181" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF2051" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1900" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1843" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1804" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1596" 39 5.87e-05 ATCTTCGCGT AAGGAGC TTATG "SF1439" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1428" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1356" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1252" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1058" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF1037" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF0881" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF0865" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "SF0302" 39 5.87e-05 ATGGCATCAG AAGGAGC TAATA "yaeD" 36 5.87e-05 ATGCCTTATT AAGGAGC TATAAAAG "CP0222" 43 9.82e-05 ATAATCGTTG CAGGAGC T "serB" 40 9.82e-05 AACGATTTTA CAGGAGC CTTA "holD" 36 9.82e-05 CCCCTGACAA CAGGAGC GATTCGCT "pepA" 37 9.82e-05 CTTTAAGATT CAGGAGC GTAGTGC "rplJ" 37 9.82e-05 GGCAAACATC CAGGAGC AAAGCTA "ibpA" 36 9.82e-05 TCGCTGATTT CAGGAGC TATTGATT "iciA" 33 9.82e-05 AAGCATTTAC CAGGAGC AGACAACAGC "SF1686" 17 9.82e-05 TGCGATTTTG CAGGAGC TGAAGTTAGG "yoaE" 39 9.82e-05 ATTCCTTAAG CAGGAGC TTGTC "ptsG" 34 9.82e-05 CACCCATACT CAGGAGC ACTCTCAATT "SF0925a" 25 9.82e-05 ATCGGGTCGG CAGGAGC GGCGGTAATG "SF0551" 39 9.82e-05 ACGACCATAA CAGGAGC ATCCT "yjfP" 39 1.85e-04 ACCAGACAAA AAGGAGA GACAG "groES" 37 1.85e-04 GACTTTCTCA AAGGAGA GTTATCA "yjbB" 34 1.85e-04 ATATAACGAT AAGGAGA ATCTGAACTC "SF3047" 40 1.85e-04 GAACGGTGGA AAGGAGA GGTC "SF2755" 40 1.85e-04 TTAAATTAAC AAGGAGA GCAG "srlA" 39 1.85e-04 ATAAATCCTG AAGGAGA GAACA "yfiL" 39 1.85e-04 TGCTTTGAAA AAGGAGA AAGAA "yfeC" 42 1.85e-04 TGTTATGTTC AAGGAGA GG "yeiH" 39 1.85e-04 TGCCCGGTTA AAGGAGA GGGTT "SF1792a" 38 1.85e-04 GCCATCCGGC AAGGAGA AAGGCT "SF1504" 40 1.85e-04 CGTCTTAATC AAGGAGA ACTC "pgpB" 40 1.85e-04 ACTTATCAAA AAGGAGA GGCC "icdA" 39 1.85e-04 GTAGCGCTCG AAGGAGA GGTGA "SF0969" 38 1.85e-04 CATTAAGGAT AAGGAGA GCAGCA "SF0821" 38 1.85e-04 CTTAACAAAC AAGGAGA TCGATC "gltA" 38 1.85e-04 ATAAGGCGCT AAGGAGA CCTTAA "ybaY" 39 1.85e-04 CATTGATAAT AAGGAGA AATGA "ampD" 38 1.85e-04 CACCACATAT AAGGAGA TCCTGC "deoC" 39 2.44e-04 GGCGACAAGC CAGGAGA ATGAA "SF4294" 39 2.44e-04 GCTGCTATTA CAGGAGA AACCT "yjbC" 40 2.44e-04 CCGCGTTTTA CAGGAGA ATTT "SF4039" 36 2.44e-04 ATTTACAACA CAGGAGA TTGCAATA "yiiU" 41 2.44e-04 CCTTGCAATT CAGGAGA GGT "pstS" 40 2.44e-04 TGAATCCTCC CAGGAGA CATT "yrbL" 40 2.44e-04 AAAATATTTC CAGGAGA TGGC "sdaC" 39 2.44e-04 TGCATTCCTC CAGGAGA AATAG "SF2642" 39 2.44e-04 TGAAGATTCG CAGGAGA GCAAG "narP" 39 2.44e-04 AATAAAACCT CAGGAGA CTACT "amn" 39 2.44e-04 TTGTATGGAA CAGGAGA CACAC "SF1795" 39 2.44e-04 ACGTTCCTGA CAGGAGA AAACC "slyB" 37 2.44e-04 TCATGGTGAA CAGGAGA TTTTTCA "dcp" 39 2.44e-04 ACCTCGCGTT CAGGAGA AGAAA "galU" 38 2.44e-04 ACGAACAGTC CAGGAGA ATTTAA "narG" 38 2.44e-04 CAGGCTCCCA CAGGAGA AAACCG "ybhQ" 38 2.44e-04 ATAAATTCTT CAGGAGA GAAGCC "clpP" 39 2.44e-04 CAATTTTATC CAGGAGA CGGAA "SF4362" 20 3.21e-04 CTATTTCAGG AAGGAGT GTCCGTTAAA "yjgI" 40 3.21e-04 ATAATAAATC AAGGAGT CCTT "gadA" 39 3.21e-04 AAATAAATTT AAGGAGT TCGAA "uspA" 38 3.21e-04 AACTTTATGG AAGGAGT AACACT "nlp" 36 3.21e-04 CGACTAACTT AAGGAGT GAGGAAAG "ygiE" 39 3.21e-04 GAAGATTTAT AAGGAGT TGTCG "talA" 37 3.21e-04 TTTACTTTTC AAGGAGT ATTTCCT "dld" 39 3.21e-04 TCGCCACCAC AAGGAGT GGAAA "gadB" 39 3.21e-04 CAATCATTTT AAGGAGT TTAAA "SF1467" 40 3.21e-04 CTTTATATTT AAGGAGT GCCT "SF1465" 39 3.21e-04 CAATAACGTT AAGGAGT TCCCT "ycjG" 40 3.21e-04 CCGCGACAAC AAGGAGT AAAG "chaB" 39 3.21e-04 AACTTTGTAA AAGGAGT CAACG "rimJ" 35 3.21e-04 ACGTTACGGG AAGGAGT AGGTATAGA "SF0886" 19 3.21e-04 CTATTTCAGG AAGGAGT GTCCGTTAAA "ybaS" 35 3.21e-04 CATCTATAAA AAGGAGT TAACAAAAG "yaeQ" 38 3.21e-04 CCTGATTCGA AAGGAGT TTTCTT "SF0005" 30 3.21e-04 GCAATGATAA AAGGAGT AACCTGTGAA "adiY" 38 3.74e-04 TATTCGCACT CAGGAGT ACATGT "asnA" 37 3.74e-04 CAACAGGACG CAGGAGT ATAAAAA "ydjA" 19 3.74e-04 AATATCACGA CAGGAGT TAATCAAATG "SF1417" 39 3.74e-04 AACAATTTAG CAGGAGT TAACA "appC" 40 3.74e-04 TCTTCGCCTA CAGGAGT GCGC "lrp" 16 3.74e-04 CAGGGTCAGA CAGGAGT AGGGAAGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- "rpsF" 5.9e-05 37_[+1]_6 "yjgA" 5.9e-05 38_[+1]_5 "yihD" 5.9e-05 37_[+1]_6 "SF3801" 5.9e-05 38_[+1]_5 "yidH" 5.9e-05 39_[+1]_4 "SF3749" 5.9e-05 38_[+1]_5 "yhiE" 5.9e-05 38_[+1]_5 "pckA" 5.9e-05 37_[+1]_6 "SF2994" 5.9e-05 38_[+1]_5 "SF2756" 5.9e-05 38_[+1]_5 "SF2698" 5.9e-05 37_[+1]_6 "SF2620" 5.9e-05 38_[+1]_5 "SF2547" 5.9e-05 38_[+1]_5 "hyfA" 5.9e-05 39_[+1]_4 "cysZ" 5.9e-05 32_[+1]_11 "yeiG" 5.9e-05 38_[+1]_5 "SF2181" 5.9e-05 38_[+1]_5 "SF2051" 5.9e-05 38_[+1]_5 "SF1900" 5.9e-05 38_[+1]_5 "SF1843" 5.9e-05 38_[+1]_5 "SF1804" 5.9e-05 38_[+1]_5 "SF1596" 5.9e-05 38_[+1]_5 "SF1439" 5.9e-05 38_[+1]_5 "SF1428" 5.9e-05 38_[+1]_5 "SF1356" 5.9e-05 38_[+1]_5 "SF1252" 5.9e-05 38_[+1]_5 "SF1058" 5.9e-05 38_[+1]_5 "SF1037" 5.9e-05 38_[+1]_5 "SF0881" 5.9e-05 38_[+1]_5 "SF0865" 5.9e-05 38_[+1]_5 "SF0302" 5.9e-05 38_[+1]_5 "yaeD" 5.9e-05 35_[+1]_8 "CP0222" 9.8e-05 42_[+1]_1 "serB" 9.8e-05 39_[+1]_4 "holD" 9.8e-05 35_[+1]_8 "pepA" 9.8e-05 36_[+1]_7 "rplJ" 9.8e-05 36_[+1]_7 "ibpA" 9.8e-05 35_[+1]_8 "iciA" 9.8e-05 32_[+1]_11 "SF1686" 9.8e-05 16_[+1]_27 "yoaE" 9.8e-05 38_[+1]_5 "ptsG" 9.8e-05 33_[+1]_10 "SF0925a" 9.8e-05 24_[+1]_19 "SF0551" 9.8e-05 38_[+1]_5 "yjfP" 0.00019 38_[+1]_5 "groES" 0.00019 36_[+1]_7 "yjbB" 0.00019 33_[+1]_10 "SF3047" 0.00019 39_[+1]_4 "SF2755" 0.00019 39_[+1]_4 "srlA" 0.00019 38_[+1]_5 "yfiL" 0.00019 38_[+1]_5 "yfeC" 0.00019 41_[+1]_2 "yeiH" 0.00019 38_[+1]_5 "SF1792a" 0.00019 37_[+1]_6 "SF1504" 0.00019 39_[+1]_4 "pgpB" 0.00019 39_[+1]_4 "icdA" 0.00019 38_[+1]_5 "SF0969" 0.00019 37_[+1]_6 "SF0821" 0.00019 37_[+1]_6 "gltA" 0.00019 37_[+1]_6 "ybaY" 0.00019 38_[+1]_5 "ampD" 0.00019 37_[+1]_6 "deoC" 0.00024 38_[+1]_5 "SF4294" 0.00024 38_[+1]_5 "yjbC" 0.00024 39_[+1]_4 "SF4039" 0.00024 35_[+1]_8 "yiiU" 0.00024 40_[+1]_3 "pstS" 0.00024 39_[+1]_4 "yrbL" 0.00024 39_[+1]_4 "sdaC" 0.00024 38_[+1]_5 "SF2642" 0.00024 38_[+1]_5 "narP" 0.00024 38_[+1]_5 "amn" 0.00024 38_[+1]_5 "SF1795" 0.00024 38_[+1]_5 "slyB" 0.00024 36_[+1]_7 "dcp" 0.00024 38_[+1]_5 "galU" 0.00024 37_[+1]_6 "narG" 0.00024 37_[+1]_6 "ybhQ" 0.00024 37_[+1]_6 "clpP" 0.00024 38_[+1]_5 "SF4362" 0.00032 19_[+1]_24 "yjgI" 0.00032 39_[+1]_4 "gadA" 0.00032 38_[+1]_5 "uspA" 0.00032 37_[+1]_6 "nlp" 0.00032 35_[+1]_8 "ygiE" 0.00032 38_[+1]_5 "talA" 0.00032 36_[+1]_7 "dld" 0.00032 38_[+1]_5 "gadB" 0.00032 38_[+1]_5 "SF1467" 0.00032 39_[+1]_4 "SF1465" 0.00032 38_[+1]_5 "ycjG" 0.00032 39_[+1]_4 "chaB" 0.00032 38_[+1]_5 "rimJ" 0.00032 34_[+1]_9 "SF0886" 0.00032 18_[+1]_25 "ybaS" 0.00032 34_[+1]_9 "yaeQ" 0.00032 37_[+1]_6 "SF0005" 0.00032 29_[+1]_14 "adiY" 0.00037 37_[+1]_6 "asnA" 0.00037 36_[+1]_7 "ydjA" 0.00037 18_[+1]_25 "SF1417" 0.00037 38_[+1]_5 "appC" 0.00037 39_[+1]_4 "lrp" 0.00037 15_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAGGAGH width=7 seqs=104 "rpsF" ( 38) AAGGAGC 1 "yjgA" ( 39) AAGGAGC 1 "yihD" ( 38) AAGGAGC 1 "SF3801" ( 39) AAGGAGC 1 "yidH" ( 40) AAGGAGC 1 "SF3749" ( 39) AAGGAGC 1 "yhiE" ( 39) AAGGAGC 1 "pckA" ( 38) AAGGAGC 1 "SF2994" ( 39) AAGGAGC 1 "SF2756" ( 39) AAGGAGC 1 "SF2698" ( 38) AAGGAGC 1 "SF2620" ( 39) AAGGAGC 1 "SF2547" ( 39) AAGGAGC 1 "hyfA" ( 40) AAGGAGC 1 "cysZ" ( 33) AAGGAGC 1 "yeiG" ( 39) AAGGAGC 1 "SF2181" ( 39) AAGGAGC 1 "SF2051" ( 39) AAGGAGC 1 "SF1900" ( 39) AAGGAGC 1 "SF1843" ( 39) AAGGAGC 1 "SF1804" ( 39) AAGGAGC 1 "SF1596" ( 39) AAGGAGC 1 "SF1439" ( 39) AAGGAGC 1 "SF1428" ( 39) AAGGAGC 1 "SF1356" ( 39) AAGGAGC 1 "SF1252" ( 39) AAGGAGC 1 "SF1058" ( 39) AAGGAGC 1 "SF1037" ( 39) AAGGAGC 1 "SF0881" ( 39) AAGGAGC 1 "SF0865" ( 39) AAGGAGC 1 "SF0302" ( 39) AAGGAGC 1 "yaeD" ( 36) AAGGAGC 1 "CP0222" ( 43) CAGGAGC 1 "serB" ( 40) CAGGAGC 1 "holD" ( 36) CAGGAGC 1 "pepA" ( 37) CAGGAGC 1 "rplJ" ( 37) CAGGAGC 1 "ibpA" ( 36) CAGGAGC 1 "iciA" ( 33) CAGGAGC 1 "SF1686" ( 17) CAGGAGC 1 "yoaE" ( 39) CAGGAGC 1 "ptsG" ( 34) CAGGAGC 1 "SF0925a" ( 25) CAGGAGC 1 "SF0551" ( 39) CAGGAGC 1 "yjfP" ( 39) AAGGAGA 1 "groES" ( 37) AAGGAGA 1 "yjbB" ( 34) AAGGAGA 1 "SF3047" ( 40) AAGGAGA 1 "SF2755" ( 40) AAGGAGA 1 "srlA" ( 39) AAGGAGA 1 "yfiL" ( 39) AAGGAGA 1 "yfeC" ( 42) AAGGAGA 1 "yeiH" ( 39) AAGGAGA 1 "SF1792a" ( 38) AAGGAGA 1 "SF1504" ( 40) AAGGAGA 1 "pgpB" ( 40) AAGGAGA 1 "icdA" ( 39) AAGGAGA 1 "SF0969" ( 38) AAGGAGA 1 "SF0821" ( 38) AAGGAGA 1 "gltA" ( 38) AAGGAGA 1 "ybaY" ( 39) AAGGAGA 1 "ampD" ( 38) AAGGAGA 1 "deoC" ( 39) CAGGAGA 1 "SF4294" ( 39) CAGGAGA 1 "yjbC" ( 40) CAGGAGA 1 "SF4039" ( 36) CAGGAGA 1 "yiiU" ( 41) CAGGAGA 1 "pstS" ( 40) CAGGAGA 1 "yrbL" ( 40) CAGGAGA 1 "sdaC" ( 39) CAGGAGA 1 "SF2642" ( 39) CAGGAGA 1 "narP" ( 39) CAGGAGA 1 "amn" ( 39) CAGGAGA 1 "SF1795" ( 39) CAGGAGA 1 "slyB" ( 37) CAGGAGA 1 "dcp" ( 39) CAGGAGA 1 "galU" ( 38) CAGGAGA 1 "narG" ( 38) CAGGAGA 1 "ybhQ" ( 38) CAGGAGA 1 "clpP" ( 39) CAGGAGA 1 "SF4362" ( 20) AAGGAGT 1 "yjgI" ( 40) AAGGAGT 1 "gadA" ( 39) AAGGAGT 1 "uspA" ( 38) AAGGAGT 1 "nlp" ( 36) AAGGAGT 1 "ygiE" ( 39) AAGGAGT 1 "talA" ( 37) AAGGAGT 1 "dld" ( 39) AAGGAGT 1 "gadB" ( 39) AAGGAGT 1 "SF1467" ( 40) AAGGAGT 1 "SF1465" ( 39) AAGGAGT 1 "ycjG" ( 40) AAGGAGT 1 "chaB" ( 39) AAGGAGT 1 "rimJ" ( 35) AAGGAGT 1 "SF0886" ( 19) AAGGAGT 1 "ybaS" ( 35) AAGGAGT 1 "yaeQ" ( 38) AAGGAGT 1 "SF0005" ( 30) AAGGAGT 1 "adiY" ( 38) CAGGAGT 1 "asnA" ( 37) CAGGAGT 1 "ydjA" ( 19) CAGGAGT 1 "SF1417" ( 39) CAGGAGT 1 "appC" ( 40) CAGGAGT 1 "lrp" ( 16) CAGGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 7 n= 43428 bayes= 9.86874 E= 4.1e-028 110 75 -1334 -1334 171 -1334 -1334 -1334 -1334 -1334 221 -1334 -1334 -1334 221 -1334 171 -1334 -1334 -1334 -1334 -1334 221 -1334 18 104 -1334 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 7 nsites= 104 E= 4.1e-028 0.653846 0.346154 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.346154 0.423077 0.000000 0.230769 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGGAGH MEME-1 regular expression -------------------------------------------------------------------------------- [AC]AGGAG[CAT] -------------------------------------------------------------------------------- Time 127.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- "SF0005" 1.40e-02 50 "SF0008" 3.58e-01 50 "dnaK" 3.76e-01 50 "nhaA" 1.73e-01 50 "SF0020a" 6.00e-01 50 "slpA" 3.37e-01 50 "carA" 2.85e-01 50 "caiF" 2.05e-01 50 "fixA" 4.57e-01 50 "fixC" 3.61e-02 50 "djlA" 3.76e-01 50 "araC" 2.05e-01 50 "yabM" 4.57e-01 50 "leuO" 8.26e-01 50 "ilvI" 1.00e+00 50 "yabB" 1.73e-01 50 "guaC" 2.05e-01 50 "ampD" 8.12e-03 50 "pdhR" 1.14e-01 50 "lpdA" 1.24e-01 50 "acnB" 4.20e-02 50 "yacK" 1.73e-01 50 "hpt" 9.02e-01 50 "yadG" 7.20e-01 50 "yadD" 7.20e-01 50 "insB" 7.20e-01 50 "hrpB" 7.58e-01 50 "fhuA" 8.62e-01 50 "yadQ" 8.80e-01 50 "SF0152" 1.24e-01 50 "htrA" 7.20e-01 50 "rpsB" 8.93e-01 50 "tsf" 6.28e-01 50 "frr" 2.34e-01 50 "yaeQ" 1.40e-02 50 "yaeD" 2.58e-03 35_[+1(5.87e-05)]_8 "rrsH" 8.26e-01 50 "SF4438" 1.73e-01 50 "yafD" 8.26e-01 50 "yafE" 3.82e-01 50 "yafS" 9.16e-01 50 "dnaQ" 6.00e-01 50 "SF0209" 7.20e-01 50 "SF0215" 5.55e-01 50 "ddl" 7.58e-01 50 "SF0234" 1.73e-01 50 "yaiH" 7.20e-01 50 "insA" 3.61e-02 50 "hemB" 8.62e-01 50 "ykgH" 7.58e-01 50 "ykfE" 2.56e-01 50 "gmhA" 1.73e-01 50 "yafJ" 5.55e-01 50 "yafL" 2.05e-01 50 "mbhA" 7.20e-01 50 "SF0283" 6.28e-01 50 "gpt" 7.58e-01 50 "SF0302" 2.58e-03 38_[+1(5.87e-05)]_5 "gtrAI" 9.32e-01 50 "SF0309" 1.24e-01 50 "SF0314" 1.24e-01 50 "SF0315" 3.76e-01 50 "adrA" 9.75e-01 50 "yaiI" 3.06e-01 50 "aroM" 2.65e-01 50 "SF0328" 7.58e-01 50 "yajF" 4.57e-01 50 "phoB" 6.00e-01 50 "brnQ" 8.26e-01 50 "queA" 8.62e-01 50 "nrdR" 7.58e-01 50 "SF0360" 4.57e-01 50 "yajQ" 1.14e-01 50 "bolA" 4.57e-01 50 "clpP" 1.07e-02 50 "hupB" 2.34e-01 50 "cof" 1.24e-01 50 "ybaY" 8.12e-03 50 "ffs" 2.53e-01 50 "acrR" 7.20e-01 50 "ybaN" 7.60e-02 50 "gsk" 9.96e-01 50 "ushA" 1.14e-01 50 "ybaQ" 1.73e-01 50 "ybaS" 1.40e-02 50 "ybbL" 1.73e-01 50 "ybbA" 1.14e-01 50 "ybbT" 1.73e-01 50 "ylbF" 6.00e-01 50 "cysS" 8.26e-01 50 "sfmA" 8.80e-01 50 "sfmC" 1.73e-01 50 "SF4444" 7.58e-01 50 "ylcB" 3.37e-01 50 "SF0478" 2.53e-01 50 "ybdE" 4.57e-01 50 "SF0489" 8.26e-01 50 "SF0494" 6.00e-01 50 "fes" 7.20e-01 50 "entF" 2.47e-02 50 "fepE" 3.76e-01 50 "ybdA" 8.26e-01 50 "entC" 8.93e-01 50 "ybdL" 5.55e-01 50 "SF0519" 1.73e-01 50 "ahpC" 2.65e-01 50 "ahpF" 4.57e-01 50 "ybdR" 2.85e-01 50 "ybhA" 7.58e-01 50 "modE" 2.05e-01 50 "galE" 3.61e-02 50 "gpmA" 8.10e-02 50 "SF0551" 4.31e-03 38_[+1(9.82e-05)]_5 "farR" 1.73e-01 50 "gltA" 8.12e-03 50 "ybgD" 2.34e-01 50 "ybgH" 9.65e-01 50 "SF0591" 4.57e-01 50 "kdpA" 5.05e-01 50 "kdpD" 7.58e-01 50 "speF" 9.47e-01 50 "ybfF" 6.00e-01 50 "fur" 2.05e-01 50 "nagB" 3.76e-01 50 "asnB" 1.14e-01 50 "SF4448" 4.57e-01 50 "yleA" 1.14e-01 50 "ybeJ" 1.73e-01 50 "ybeT" 8.26e-01 50 "ybeQ" 4.57e-01 50 "leuS" 1.14e-01 50 "ybeB" 2.85e-01 50 "ybeF" 4.57e-01 50 "lipA" 5.55e-01 50 "ccrB" 2.53e-01 50 "dcuC" 1.24e-01 50 "SF0662" 5.55e-01 50 "SF0676" 1.73e-01 50 "SF0677" 4.57e-01 50 "SF0682" 8.26e-01 50 "SF0684" 2.85e-01 50 "ybcQ" 2.05e-01 50 "SF0689" 3.76e-01 50 "SF0697" 3.82e-01 50 "SF0701" 5.05e-01 50 "bioB" 3.37e-01 50 "uvrB" 4.57e-01 50 "moaA" 1.73e-01 50 "ybhM" 1.73e-01 50 "ybhQ" 1.07e-02 50 "rhlE" 5.05e-01 50 "dinG" 8.62e-01 50 "SF0755" 5.55e-01 50 "ybiN" 9.96e-01 50 "ompX" 6.28e-01 50 "SF0767" 1.73e-01 50 "ybiT" 2.05e-01 50 "mipB" 8.26e-01 50 "ybiK" 4.57e-01 50 "bssR" 2.56e-01 50 "SF0789" 5.55e-01 50 "cmr" 8.80e-01 50 "SF0799" 5.05e-01 50 "ybjM" 2.47e-02 50 "ybjC" 4.57e-01 50 "mdaA" 9.47e-01 50 "potF" 1.73e-01 50 "SF0820" 8.10e-02 50 "SF0821" 8.12e-03 50 "ybjD" 1.73e-01 50 "SF0837" 8.91e-01 50 "clpS" 5.55e-01 50 "lrp" 1.63e-02 50 "dmsA" 9.32e-01 50 "ycaD" 8.62e-01 50 "SF0858" 7.20e-01 50 "SF0865" 2.58e-03 38_[+1(5.87e-05)]_5 "SF0876" 7.58e-01 50 "SF0877" 1.14e-01 50 "SF0880" 9.16e-01 50 "SF0881" 2.58e-03 38_[+1(5.87e-05)]_5 "SF0886" 1.40e-02 50 "ybhE" 5.05e-01 50 "ybhH" 4.57e-01 50 "SF0901" 3.37e-01 50 "smtA" 3.76e-01 50 "ycbB" 2.85e-01 50 "SF0925a" 4.31e-03 24_[+1(9.82e-05)]_19 "pepN" 2.53e-01 50 "ycbS" 4.57e-01 50 "rlmL" 7.20e-01 50 "SF953a" 3.06e-01 50 "ycbG" 2.34e-01 50 "SF0959" 2.34e-01 50 "helD" 8.26e-01 50 "SF0967" 9.32e-01 50 "SF0969" 8.12e-03 50 "hyaA" 4.20e-02 50 "appC" 1.63e-02 50 "cspG" 3.06e-01 50 "torT" 7.20e-01 50 "torC" 2.05e-01 50 "yccE" 7.20e-01 50 "agp" 2.79e-01 50 "ycdC" 3.58e-01 50 "SF1019" 7.60e-02 50 "SF1022" 9.65e-01 50 "SF1025" 8.62e-01 50 "ycdW" 8.26e-01 50 "csgB" 5.55e-01 50 "SF1037" 2.58e-03 38_[+1(5.87e-05)]_5 "csgC" 1.24e-01 50 "mdoG" 2.65e-01 50 "SF1047" 4.57e-01 50 "SF1051" 4.57e-01 50 "SF1054" 7.20e-01 50 "SF1056" 1.24e-01 50 "SF1058" 2.58e-03 38_[+1(5.87e-05)]_5 "yceA" 1.14e-01 50 "rimJ" 1.40e-02 50 "flgB" 4.20e-02 50 "SF1089" 4.57e-01 50 "yceD" 9.32e-01 50 "acpP" 5.05e-01 50 "ptsG" 4.31e-03 33_[+1(9.82e-05)]_10 "ycfF" 1.73e-01 50 "ndh" 2.65e-01 50 "ycfJ" 1.90e-02 50 "ycfR" 9.47e-01 50 "ycfU" 7.20e-01 50 "pepT" 5.55e-01 50 "SF1131" 7.20e-01 50 "SF1133a" 5.55e-01 50 "SF1136" 1.14e-01 50 "SF1137" 4.95e-02 50 "SF1138" 6.00e-01 50 "icdA" 8.12e-03 50 "SF1156" 7.58e-01 50 "SF1156b" 2.53e-01 50 "SF1160" 9.32e-01 50 "SF1166" 8.26e-01 50 "ycgL" 9.02e-01 50 "umuD" 7.20e-01 50 "fadR" 6.28e-01 50 "dadA" 5.05e-01 50 "mltE" 7.20e-01 50 "SF1185" 8.80e-01 50 "ymgE" 3.06e-01 50 "SF1195" 8.91e-01 50 "SF1198" 8.26e-01 50 "SF1204" 5.55e-01 50 "SF1205a" 8.80e-01 50 "ychH" 2.85e-01 50 "hemA" 1.73e-01 50 "chaB" 1.40e-02 50 "ychP" 4.57e-01 50 "narK" 2.34e-01 50 "narG" 1.07e-02 50 "ychK" 1.14e-01 50 "galU" 1.07e-02 50 "tdk" 9.16e-01 50 "ychE" 2.79e-01 50 "oppA" 1.73e-01 50 "SF1252" 2.58e-03 38_[+1(5.87e-05)]_5 "tonB" 8.80e-01 50 "yciD" 3.61e-02 50 "yciV" 1.14e-01 50 "sohB" 2.65e-01 50 "topA" 1.14e-01 50 "cysB" 7.20e-01 50 "SF1278" 6.28e-01 50 "acnA" 1.90e-02 50 "pgpB" 8.12e-03 50 "puuD" 4.57e-01 50 "pspA" 2.05e-01 50 "SF1316" 7.60e-02 50 "ycjX" 2.05e-01 50 "ycjG" 1.40e-02 50 "SF1335" 1.14e-01 50 "ycjZ" 1.14e-01 50 "SF1344" 2.85e-01 50 "SF1350a" 4.57e-01 50 "SF1350b" 7.20e-01 50 "SF1353" 3.76e-01 50 "SF1356" 2.58e-03 38_[+1(5.87e-05)]_5 "SF1359" 1.24e-01 50 "SF1374" 1.24e-01 50 "SF1382" 3.82e-01 50 "pphA" 2.85e-01 50 "SF1393" 7.58e-01 50 "SF1398" 3.06e-01 50 "SF1400" 3.76e-01 50 "SF1402" 3.06e-01 50 "yoaE" 4.31e-03 38_[+1(9.82e-05)]_5 "SF1417" 1.63e-02 50 "SF1420" 2.85e-01 50 "SF1428" 2.58e-03 38_[+1(5.87e-05)]_5 "yoaF" 8.26e-01 50 "yeaM" 8.26e-01 50 "SF1436" 1.24e-01 50 "SF1439" 2.58e-03 38_[+1(5.87e-05)]_5 "yeaF" 2.34e-01 50 "yeaA" 7.20e-01 50 "SF1447" 7.58e-01 50 "ydjA" 1.63e-02 50 "SF1463" 7.20e-01 50 "SF1465" 1.40e-02 50 "SF1467" 1.40e-02 50 "SF1471" 5.55e-01 50 "cstC" 7.58e-01 50 "spy" 1.73e-01 50 "SF1484" 4.95e-02 50 "osmE" 3.58e-01 50 "celA" 5.05e-01 50 "celF" 1.14e-01 50 "SF1497" 4.95e-02 50 "ydjO" 8.26e-01 50 "SF1504" 8.12e-03 50 "SF1508" 4.57e-01 50 "thrS" 1.73e-01 50 "pheS" 3.06e-01 50 "SF1524" 7.58e-01 50 "ppsA" 2.34e-01 50 "SF1534" 2.65e-01 50 "ycgW" 1.73e-01 50 "SF1552" 6.28e-01 50 "dcp" 1.07e-02 50 "SF1559" 5.55e-01 50 "ydeD" 9.02e-01 50 "ydeB" 2.05e-01 50 "SF1568" 5.55e-01 50 "SF1571" 8.62e-01 50 "uxaB" 3.58e-01 50 "SF1575" 7.60e-02 50 "SF1583" 6.28e-01 50 "SF1593" 7.20e-01 50 "SF1596" 2.58e-03 38_[+1(5.87e-05)]_5 "SF1607" 5.05e-01 50 "ynfM" 2.34e-01 50 "asr" 7.20e-01 50 "SF1619" 8.62e-01 50 "tqsA" 3.06e-01 50 "SF1625" 1.14e-01 50 "rstA" 6.00e-01 50 "SF1631" 3.06e-01 50 "manA" 8.26e-01 50 "malX" 8.10e-02 50 "SF1649a" 7.20e-01 50 "SF1650" 4.57e-01 50 "tppB" 3.06e-01 50 "slyB" 1.07e-02 50 "SF1670" 2.34e-01 50 "SF1676" 8.62e-01 50 "ydhO" 5.55e-01 50 "SF1686" 4.31e-03 16_[+1(9.82e-05)]_27 "ydhC" 7.20e-01 50 "cfa" 1.14e-01 50 "ydhE" 1.73e-01 50 "SF4469" 9.78e-01 50 "pykF" 8.80e-01 50 "lpp" 1.14e-01 50 "SF1709" 8.26e-01 50 "SF1718" 1.14e-01 50 "SF1719" 4.57e-01 50 "SF1721" 8.91e-01 50 "ydeN" 1.73e-01 50 "yddA" 9.65e-01 50 "SF1731" 3.82e-01 50 "gadB" 1.40e-02 50 "yddV" 7.20e-01 50 "SF1739" 1.14e-01 50 "sfcA" 2.34e-01 50 "yddG" 2.05e-01 50 "SF1755" 2.34e-01 50 "narU" 3.37e-01 50 "SF1769" 9.16e-01 50 "SF1777" 6.00e-01 50 "SF1778a" 7.58e-01 50 "SF1782" 7.58e-01 50 "SF1788" 2.05e-01 50 "SF1790" 8.26e-01 50 "SF1792a" 8.12e-03 50 "SF1795" 1.07e-02 50 "SF1799" 4.95e-02 50 "acpD" 1.73e-01 50 "SF1804" 2.58e-03 38_[+1(5.87e-05)]_5 "ydbH" 2.05e-01 50 "ydbK" 7.20e-01 50 "SF1823" 2.34e-01 50 "SF1828" 6.00e-01 50 "SF1831" 2.34e-01 50 "SF1834" 9.96e-01 50 "SF1834a" 7.58e-01 50 "SF1840" 2.30e-02 50 "SF1843" 2.58e-03 38_[+1(5.87e-05)]_5 "SF1847" 3.82e-01 50 "SF1849" 1.14e-01 50 "holE" 4.20e-02 50 "purT" 1.24e-01 50 "yebK" 8.62e-01 50 "znuC" 8.91e-01 50 "SF1872" 8.26e-01 50 "yecD" 9.96e-01 50 "SF1879" 8.26e-01 50 "ipaH_4" 6.00e-01 50 "SF1897" 1.14e-01 50 "SF1900" 2.58e-03 38_[+1(5.87e-05)]_5 "SF1904" 7.20e-01 50 "yecE" 2.85e-01 50 "argS" 3.82e-01 50 "SF1927" 3.37e-01 50 "SF1928" 5.55e-01 50 "yecI" 1.73e-01 50 "SF1950" 5.55e-01 50 "tyrP" 2.05e-01 50 "yecF" 5.05e-01 50 "fliD" 1.73e-01 50 "yedE" 5.55e-01 50 "SF1976" 4.57e-01 50 "nmpC" 4.57e-01 50 "fliF" 6.00e-01 50 "rcsA" 1.14e-01 50 "SF1998" 5.05e-01 50 "SF1999" 1.14e-01 50 "yedA" 8.26e-01 50 "SF2009" 5.55e-01 50 "SF2017" 1.73e-01 50 "SF2020" 2.85e-01 50 "SF2021" 1.00e+00 50 "ipaH_5" 2.05e-01 50 "SF2042a" 3.61e-02 50 "SF2045" 2.05e-01 50 "SF2046" 7.20e-01 50 "SF2051" 2.58e-03 38_[+1(5.87e-05)]_5 "amn" 1.07e-02 50 "SF2054" 4.20e-02 50 "SF4484" 7.20e-01 50 "SF4485" 9.32e-01 50 "SF2064" 1.24e-01 50 "SF2065" 7.20e-01 50 "SF2066" 4.57e-01 50 "SF2069" 8.91e-01 50 "sbcB" 7.58e-01 50 "hisG" 3.06e-01 50 "yegH" 8.80e-01 50 "yegE" 6.28e-01 50 "yegD" 8.62e-01 50 "SF2138" 1.14e-01 50 "SF2149" 4.57e-01 50 "SF2160" 1.14e-01 50 "SF2162" 8.26e-01 50 "yohM" 5.05e-01 50 "yohN" 2.05e-01 50 "metG" 2.34e-01 50 "SF2181" 2.58e-03 38_[+1(5.87e-05)]_5 "molR_2" 9.00e-01 50 "yehI" 7.60e-02 50 "yehL" 9.96e-01 50 "yehR" 1.73e-01 50 "SF2199" 5.55e-01 50 "SF2200" 2.47e-02 50 "SF2201" 1.00e+00 50 "ipaH_6" 2.05e-01 50 "SF2211" 1.24e-01 50 "dld" 1.40e-02 50 "yohD" 7.20e-01 50 "yohJ" 7.58e-01 50 "yeiG" 2.58e-03 38_[+1(5.87e-05)]_5 "yeiH" 8.12e-03 50 "yeiL" 7.60e-02 50 "yeiO" 7.60e-02 50 "yeiP" 2.53e-01 50 "yeiQ" 8.26e-01 50 "spr" 2.34e-01 50 "yejH" 5.05e-01 50 "yejL" 9.65e-01 50 "narP" 1.07e-02 50 "eco" 1.73e-01 50 "micF" 8.26e-01 50 "yojN" 7.58e-01 50 "ubiG" 1.73e-01 50 "SF2314" 5.05e-01 50 "nrdA" 5.55e-01 50 "yfaH" 2.05e-01 50 "glpA" 6.00e-01 50 "yfaO" 8.80e-01 50 "SF2332" 1.73e-01 50 "SF2337" 2.05e-01 50 "elaC" 8.62e-01 50 "yfbL" 8.26e-01 50 "SF2366" 1.73e-01 50 "ackA" 9.32e-01 50 "yfcG" 4.95e-02 50 "flk" 1.73e-01 50 "SF2400" 7.20e-01 50 "SF2406" 5.05e-01 50 "fadL" 9.16e-01 50 "SF2422" 8.26e-01 50 "SF2425" 2.05e-01 50 "SF2430" 3.58e-01 50 "SF2432" 1.24e-01 50 "evgA" 1.14e-01 50 "SF2442a" 2.05e-01 50 "ddg" 1.14e-01 50 "SF2446" 7.58e-01 50 "SF2455" 2.34e-01 50 "nupC" 2.79e-01 50 "yfeC" 8.12e-03 50 "SF4490" 7.20e-01 50 "flxA" 6.28e-01 50 "yfeH" 7.60e-02 50 "cysZ" 2.58e-03 32_[+1(5.87e-05)]_11 "ptsH" 9.16e-01 50 "yfeK" 7.20e-01 50 "murQ" 7.20e-01 50 "amiA" 5.55e-01 50 "SF2493" 4.57e-01 50 "SF2494" 8.26e-01 50 "SF2498" 7.20e-01 50 "SF2499" 8.62e-01 50 "talA" 1.40e-02 50 "narQ" 3.76e-01 50 "acrD" 3.58e-01 50 "yffB" 2.34e-01 50 "gcvR" 2.34e-01 50 "hyfA" 2.58e-03 39_[+1(5.87e-05)]_4 "SF2538" 2.05e-01 50 "purM" 6.00e-01 50 "SF2547" 2.58e-03 38_[+1(5.87e-05)]_5 "SF2550" 7.60e-02 50 "SF2551" 2.34e-01 50 "xseA" 9.87e-01 50 "sseA" 1.73e-01 50 "suhB" 7.20e-01 50 "hcaA1" 2.53e-01 50 "yphH" 8.26e-01 50 "hmpA" 3.06e-01 50 "yfhD" 3.76e-01 50 "yfhH" 6.00e-01 50 "ipaH_7" 9.75e-01 50 "SF2615" 7.20e-01 50 "SF2620" 2.58e-03 38_[+1(5.87e-05)]_5 "yfhL" 8.80e-01 50 "nadB" 8.26e-01 50 "srmB" 6.00e-01 50 "yfiK" 4.20e-02 50 "SF2642" 1.07e-02 50 "trxC" 7.58e-01 50 "rluD" 7.60e-02 50 "yfiA" 3.58e-01 50 "pheA" 7.20e-01 50 "yfiL" 8.12e-03 50 "SF2671" 1.73e-01 50 "ppnK" 7.60e-02 50 "smpB" 7.20e-01 50 "SF2680" 2.79e-01 50 "SF2685" 3.37e-01 50 "SF2686" 8.26e-01 50 "SF2690" 6.28e-01 50 "SF2695" 9.92e-01 50 "SF2698" 2.58e-03 37_[+1(5.87e-05)]_6 "SF2700" 9.00e-01 50 "nrdH" 7.20e-01 50 "proV" 8.26e-01 50 "srlA" 8.12e-03 50 "SF2733" 6.00e-01 50 "hypA" 3.82e-01 50 "mutS" 4.57e-01 50 "SF2755" 8.12e-03 50 "SF2756" 2.58e-03 38_[+1(5.87e-05)]_5 "SF2760" 7.60e-02 50 "SF2763" 2.05e-01 50 "iap" 2.34e-01 50 "ygcM" 7.58e-01 50 "barA" 4.57e-01 50 "queF" 5.55e-01 50 "sdaC" 1.07e-02 50 "fucP" 7.20e-01 50 "gcvB" 8.62e-01 50 "SF2824" 8.10e-02 50 "SF4504" 5.05e-01 50 "argA" 1.73e-01 50 "mutH" 8.26e-01 50 "galR" 8.26e-01 50 "lysR" 4.57e-01 50 "SF2855" 9.75e-01 50 "SF2856" 8.26e-01 50 "SF2862" 4.57e-01 50 "SF2864" 7.60e-02 50 "SF2868" 3.76e-01 50 "ygfU" 1.14e-01 50 "SF2875" 6.28e-01 50 "fldB" 2.05e-01 50 "ygfZ" 2.53e-01 50 "bglA" 4.95e-02 50 "ygfE" 2.65e-01 50 "iciA" 4.31e-03 32_[+1(9.82e-05)]_11 "sbm" 3.61e-02 50 "SF2913" 5.55e-01 50 "SF2924" 3.06e-01 50 "yggG" 4.57e-01 50 "metK" 3.76e-01 50 "galP" 4.95e-02 50 "yggS" 4.57e-01 50 "SF2947" 1.73e-01 50 "SF2952" 8.80e-01 50 "mutY" 8.91e-01 50 "yqgA" 1.14e-01 50 "SF2965" 2.53e-01 50 "SF2967" 6.28e-01 50 "sigA" 5.05e-01 50 "SF2971" 1.73e-01 50 "SF2977" 5.55e-01 50 "SF2984" 7.20e-01 50 "SF2986" 8.62e-01 50 "SF2987" 2.85e-01 50 "SF2989" 1.73e-01 50 "SF2991" 9.75e-01 50 "SF2994" 2.58e-03 38_[+1(5.87e-05)]_5 "SF2995" 2.34e-01 50 "SF3003" 8.26e-01 50 "SF3004" 2.65e-01 50 "SF3005" 8.26e-01 50 "glcC" 3.58e-01 50 "SF3021" 9.75e-01 50 "yghT" 1.73e-01 50 "SF3036" 3.82e-01 50 "SF3047" 8.12e-03 50 "yghA" 1.14e-01 50 "metC" 2.53e-01 50 "yqhD" 3.61e-02 50 "yqhE" 3.06e-01 50 "ygiX" 8.62e-01 50 "mdaB" 7.58e-01 50 "tolC" 2.34e-01 50 "ygiE" 1.40e-02 50 "SF3082" 5.55e-01 50 "SF3083" 7.20e-01 50 "yqiI" 7.60e-02 50 "ygiM" 8.26e-01 50 "ygiH" 4.57e-01 50 "ttdA" 2.05e-01 50 "rpsU" 1.14e-01 50 "SF4508" 1.73e-01 50 "yqjI" 1.90e-02 50 "ygjG" 3.37e-01 50 "ebgR" 7.20e-01 50 "ygjL" 7.58e-01 50 "ygjP" 3.58e-01 50 "ygjT" 7.60e-02 50 "ygjU" 7.60e-02 50 "exuT" 8.98e-01 50 "yqjA" 2.53e-01 50 "yhaH" 4.57e-01 50 "yhaK" 1.73e-01 50 "tdcR" 6.00e-01 50 "yhaC" 1.73e-01 50 "yhaG" 1.24e-01 50 "agaZ" 1.24e-01 50 "agaC" 9.75e-01 50 "SF3181" 9.38e-01 50 "yraK" 1.73e-01 50 "yraM" 4.57e-01 50 "yhbO" 3.58e-01 50 "yhbQ" 7.20e-01 50 "yhbU" 2.05e-01 50 "argG" 3.06e-01 50 "yhbY" 6.00e-01 50 "dacB" 7.58e-01 50 "ispB" 7.20e-01 50 "nlp" 1.40e-02 50 "yrbG" 3.06e-01 50 "yrbL" 1.07e-02 50 "gltB" 1.73e-01 50 "yhcB" 1.24e-01 50 "degS" 9.47e-01 50 "argR" 6.28e-01 50 "yhcN" 8.80e-01 50 "yhcS" 4.57e-01 50 "yhdH" 3.37e-01 50 "accB" 2.34e-01 50 "yhdG" 2.79e-01 50 "SF3303" 3.82e-01 50 "yhdX" 8.80e-01 50 "yrdA" 2.53e-01 50 "def" 1.24e-01 50 "SF3354" 2.05e-01 50 "slyX" 1.73e-01 50 "yheS" 3.58e-01 50 "crp" 1.24e-01 50 "yhfC" 7.58e-01 50 "nirB" 8.26e-01 50 "yhfL" 8.26e-01 50 "yhfM" 9.99e-01 50 "mrcA" 7.20e-01 50 "yrfF" 3.82e-01 50 "pckA" 2.58e-03 37_[+1(5.87e-05)]_6 "greB" 9.47e-01 50 "feoA" 1.73e-01 50 "yhgA" 7.60e-02 50 "yhgH" 1.14e-01 50 "gntT" 7.20e-01 50 "malT" 9.75e-01 50 "rtcR" 1.73e-01 50 "glpD" 3.37e-01 50 "yhgN" 7.20e-01 50 "yhhY" 3.06e-01 50 "yhhA" 1.73e-01 50 "SF3467" 8.26e-01 50 "yhhK" 8.62e-01 50 "rsmD" 4.57e-01 50 "yhhN" 7.60e-02 50 "yhhQ" 4.57e-01 50 "yhhT" 3.06e-01 50 "yhiM" 8.62e-01 50 "SF3509" 4.57e-01 50 "SF3512" 7.20e-01 50 "SF3515" 1.73e-01 50 "pitA" 4.57e-01 50 "uspA" 1.40e-02 50 "yhiP" 3.58e-01 50 "yhiR" 5.55e-01 50 "SF3534" 8.80e-01 50 "SF3539" 2.34e-01 50 "slp" 7.20e-01 50 "hdeD" 1.24e-01 50 "yhiE" 2.58e-03 38_[+1(5.87e-05)]_5 "yhiU" 5.55e-01 50 "treF" 6.00e-01 50 "yhjC" 8.62e-01 50 "yhjE" 8.26e-01 50 "kdgK" 7.58e-01 50 "yhjS" 5.55e-01 50 "yhjV" 2.53e-01 50 "tag" 4.57e-01 50 "yiaD" 2.34e-01 50 "cspA" 4.57e-01 50 "gadA" 1.40e-02 50 "yhiX" 8.91e-01 50 "yhiW" 7.20e-01 50 "yiaH" 7.20e-01 50 "xylF" 3.58e-01 50 "malS" 2.34e-01 50 "yiaK" 3.06e-01 50 "SF3625a" 8.26e-01 50 "mtlA" 1.73e-01 50 "yibL" 1.14e-01 50 "SF3639" 1.73e-01 50 "SF3641" 7.20e-01 50 "lldP" 4.20e-02 50 "yibO" 8.62e-01 50 "rfaD" 7.20e-01 50 "kdtA" 8.62e-01 50 "dfp" 7.60e-02 50 "yicC" 1.14e-01 50 "dinD" 1.73e-01 50 "yicG" 9.96e-01 50 "gmk" 8.26e-01 50 "yicE" 7.58e-01 50 "SF4518" 7.60e-02 50 "SF3698" 1.14e-01 50 "shiA" 5.55e-01 50 "shiB" 2.53e-01 50 "SF3710" 4.57e-01 50 "shiE" 3.82e-01 50 "iucA" 9.99e-01 50 "SF3720" 1.00e+00 50 "lpfC" 1.73e-01 50 "SF3726" 9.75e-01 50 "pstS" 1.07e-02 50 "bglG" 4.57e-01 50 "yieC" 7.20e-01 50 "yieG" 8.26e-01 50 "SF3749" 2.58e-03 38_[+1(5.87e-05)]_5 "SF3762" 5.05e-01 50 "yidB" 1.24e-01 50 "yidW" 1.73e-01 50 "yidR" 7.20e-01 50 "ibpA" 4.31e-03 35_[+1(9.82e-05)]_8 "glvB" 3.06e-01 50 "yidK" 7.58e-01 50 "yidH" 2.58e-03 39_[+1(5.87e-05)]_4 "ilvB" 3.58e-01 50 "yicO" 4.57e-01 50 "SF3801" 2.58e-03 38_[+1(5.87e-05)]_5 "SF3805" 5.05e-01 50 "asnA" 1.63e-02 50 "SF3827" 5.55e-01 50 "rrsC" 8.26e-01 50 "yifE" 2.30e-02 50 "ilvL" 4.57e-01 50 "ilvC" 7.60e-02 50 "rep" 4.57e-01 50 "trxA" 6.28e-01 50 "cyaA" 1.24e-01 50 "yifL" 1.73e-01 50 "SF3892" 5.55e-01 50 "corA" 5.05e-01 50 "pldA" 1.14e-01 50 "pldB" 4.57e-01 50 "metE" 6.28e-01 50 "udp" 8.10e-02 50 "yigC" 4.57e-01 50 "pepQ" 3.58e-01 50 "rrsA" 8.26e-01 50 "yihD" 2.58e-03 37_[+1(5.87e-05)]_6 "polA" 5.55e-01 50 "yihI" 7.20e-01 50 "yihK" 4.57e-01 50 "yihL" 2.34e-01 50 "yihV" 2.34e-01 50 "SF3963" 8.80e-01 50 "yiiE" 7.58e-01 50 "yiiF" 7.20e-01 50 "fdhD" 5.05e-01 50 "rhaS" 2.47e-02 50 "sodA" 1.24e-01 50 "kdgT" 1.24e-01 50 "yiiM" 3.76e-01 50 "SF3992" 2.79e-01 50 "sbp" 5.05e-01 50 "yiiR" 7.60e-02 50 "yiiS" 2.79e-01 50 "yiiU" 1.07e-02 50 "rpmE" 3.37e-01 50 "metB" 2.05e-01 50 "metF" 7.58e-01 50 "katG" 2.79e-01 50 "frwC" 4.95e-02 50 "argC" 1.14e-01 50 "SF4039" 1.07e-02 50 "oxyR" 2.65e-01 50 "yijC" 4.95e-02 50 "btuB" 9.78e-01 50 "rrsB" 8.26e-01 50 "SF4537" 4.57e-01 50 "secE" 9.38e-01 50 "rplJ" 4.31e-03 36_[+1(9.82e-05)]_7 "rpoB" 3.37e-01 50 "nudC" 1.14e-01 50 "hydH" 1.73e-01 50 "rrsE" 8.26e-01 50 "aceB" 2.30e-02 50 "metH" 4.95e-02 50 "yjbB" 8.12e-03 50 "yjbC" 1.07e-02 50 "yjdH" 3.06e-01 50 "dcuB" 6.28e-01 50 "melR" 1.73e-01 50 "adiY" 1.63e-02 50 "phnA" 5.05e-01 50 "yjcC" 2.05e-01 50 "soxR" 5.05e-01 50 "yjcD" 1.24e-01 50 "nrfA" 3.58e-01 50 "gltP" 3.58e-01 50 "uvrA" 1.14e-01 50 "SF4150" 7.20e-01 50 "qor" 1.73e-01 50 "yjbK" 8.26e-01 50 "plsB" 1.14e-01 50 "malE" 7.60e-02 50 "xylE" 6.00e-01 50 "SF4175a" 4.57e-01 50 "lysC" 3.58e-01 50 "SF4185" 3.58e-01 50 "yjiH" 2.53e-01 50 "yjiC" 7.20e-01 50 "gntP" 7.20e-01 50 "yjhA" 9.96e-01 50 "SF4216" 4.57e-01 50 "SF4217" 1.73e-01 50 "yjgB" 5.55e-01 50 "pepA" 4.31e-03 36_[+1(9.82e-05)]_7 "SF4233" 9.92e-01 50 "argI" 2.47e-02 50 "yjgI" 1.40e-02 50 "pyrL" 2.85e-01 50 "treR" 9.32e-01 50 "nrdD" 3.61e-02 50 "yjgA" 2.58e-03 38_[+1(5.87e-05)]_5 "fbp" 7.20e-01 50 "ppa" 1.73e-01 50 "msrA" 1.24e-01 50 "ytfL" 9.16e-01 50 "ytfJ" 1.73e-01 50 "cpdB" 3.06e-01 50 "ytfG" 1.14e-01 50 "ytfB" 2.65e-01 50 "fabG" 1.73e-01 50 "SF4285" 3.82e-01 50 "SF4294" 1.07e-02 50 "groES" 8.12e-03 50 "efp" 9.32e-01 50 "yjeA" 1.24e-01 50 "SF4316a" 8.80e-01 50 "yjeR" 3.76e-01 50 "SF4547" 2.34e-01 50 "yjeF" 2.79e-01 50 "yjeB" 9.96e-01 50 "yjfM" 4.57e-01 50 "yjfP" 8.12e-03 50 "sgaT" 8.26e-01 50 "rpsF" 2.58e-03 37_[+1(5.87e-05)]_6 "SF4358" 1.73e-01 50 "SF4362" 1.40e-02 50 "hpcR" 1.24e-01 50 "yjjN" 7.20e-01 50 "SF4401" 8.26e-01 50 "holD" 4.31e-03 35_[+1(9.82e-05)]_8 "osmY" 2.53e-01 50 "deoC" 1.07e-02 50 "serB" 4.31e-03 39_[+1(9.82e-05)]_4 "slt" 8.80e-01 50 "gpmB" 2.53e-01 50 "creA" 9.55e-01 50 "lasT" 1.73e-01 50 "ospB" 9.96e-01 50 "phoN2/apy" 5.55e-01 50 "CP0013" 7.20e-01 50 "CP0018" 7.20e-01 50 "CP0021" 9.02e-01 50 "ospD1" 2.05e-01 50 "CP0023" 6.28e-01 50 "ipgB2" 2.05e-01 50 "CP0025" 5.55e-01 50 "CP0026" 4.57e-01 50 "CP0027" 2.65e-01 50 "parA" 3.61e-02 50 "CP0033" 1.24e-01 50 "CP0037" 6.00e-01 50 "CP0042" 1.73e-01 50 "CP0045" 5.55e-01 50 "CP0047" 5.05e-01 50 "ipaH2.5" 6.00e-01 50 "CP0056" 8.62e-01 50 "CP0060a" 3.37e-01 50 "CP0067" 3.82e-01 50 "CP0071" 9.00e-01 50 "CP0073" 1.14e-01 50 "ipaH7.8" 4.95e-02 50 "ipaH4.5" 7.20e-01 50 "CP0081" 1.14e-01 50 "ipgH" 6.00e-01 50 "CP0084" 4.57e-01 50 "CP0089" 5.55e-01 50 "CP0090" 7.58e-01 50 "CP0096" 9.78e-01 50 "CP0101" 8.80e-01 50 "CP0111" 9.00e-01 50 "ospC3" 7.20e-01 50 "CP0116" 2.53e-01 50 "CP0118" 6.28e-01 50 "CP0119" 8.26e-01 50 "ipaJ" 1.73e-01 50 "ipgD" 2.85e-01 50 "CP0159" 9.32e-01 50 "CP0163" 3.76e-01 50 "CP0169" 1.90e-02 50 "CP0172" 9.47e-01 50 "icsA/virG" 5.55e-01 50 "CP0183" 4.57e-01 50 "CP0184" 1.24e-01 50 "phoN1" 5.55e-01 50 "yccB" 3.58e-01 50 "CP0211" 1.24e-01 50 "CP0217" 8.62e-01 50 "CP0221" 7.60e-02 50 "CP0222" 4.31e-03 42_[+1(9.82e-05)]_1 "ccdA" 7.20e-01 50 "ipaH9.8" 9.47e-01 50 "ospG" 2.34e-01 50 "CP0230" 9.47e-01 50 "CP0232" 3.82e-01 50 "CP0233" 9.32e-01 50 "shf" 7.58e-01 50 "traD" 9.00e-01 50 "CP0247" 4.57e-01 50 "CP0256" 7.20e-01 50 "yihA" 9.75e-01 50 "repB" 7.58e-01 50 "tap" 2.53e-01 50 "CP0261" 5.55e-01 50 "CP0264" 4.57e-01 50 "CP0267" 8.62e-01 50 "CP0270" 2.79e-01 50 "icsP/sopA" 7.60e-02 50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (1) found. ******************************************************************************** CPU: kodomo ********************************************************************************