restrict none center ligand background white select protein color cpk hbonds off zoom 500 echo It is only beginning refresh pause define aaaa 236,305,329,337,425,234,332,413,306,307,331,519,309,428,330,308,333 select aaaa wireframe select aaaa and *.CA label %n%r select within (5.0,ligand) spacefill 100 select HOH spacefill off select ligand wireframe 30 spacefill 150 echo Full contacts refresh pause restrict DBH, (236, 329, 337) and sidechain echo DBH contacts: hydrophobic refresh pause select aaaa wireframe select aaaa and *.CA label %n%r select within (5.0,ligand) spacefill 100 select HOH spacefill off select ligand wireframe 30 spacefill 150 restrict DBH, 519 select LYS519A.NZ spacefill 120 echo DBH contacts: hydrogen bond refresh pause select aaaa wireframe select aaaa and *.CA label %n%r select within (5.0,ligand) spacefill 100 select HOH spacefill off select ligand wireframe 30 spacefill 150 restrict amp, 333, 234 and sidechain select ALA333.N spacefill 150 echo AMP contacts: phosphate refresh pause select aaaa wireframe select aaaa and *.CA label %n%r select within (5.0,ligand) spacefill 100 select HOH spacefill off select ligand wireframe 30 spacefill 150 restrict amp, 413 and sidechain select ASP413.OD2, ASP413.OD1 spacefill 120 refresh echo AMP contacts: ribose pause select aaaa wireframe select aaaa and *.CA label %n%r select within (5.0,ligand) spacefill 100 select HOH spacefill off select ligand wireframe 30 spacefill 150 restrict 329, 307, AMP, (330,425) and sidechain select VAL329A.O, GLY307A.N spacefill 120 echo AMP contacts: adenine refresh pause restrict none select protein hbonds off echo That is all refresh