Running MakePangenome..
Information about input data:
 Number of genomes:	3
 Number of sequences:	3
 Number of sequences per genome:	1
 Total length of input (bp):	12767713
 Minimum genome length (bp):	4221278
 Median genome length (bp):	4263919
 Average genome length (bp):	4255904
 Maximum genome length (bp):	4282516

============================

[2021-Dec-14 11:49:17 UTC+03:00] BeginIteration 1, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	440882

Stable blocks (represented in all genomes once, but not minor):
 fragments:	1140
 blocks:	380
 Block identity:
  min:	0.85
  median:	0.9185
  avg:	0.9154
  max:	0.9857

 Identity of joined blocks:	0.931831
 Nucleotides in blocks:	1254421
  The percentage of input length:	9.82%


============================

[2021-Dec-14 11:50:04 UTC+03:00] BeginIteration 2, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	3401057

Stable blocks (represented in all genomes once, but not minor):
 fragments:	5589
 blocks:	1863
 Block identity:
  min:	0.8245
  median:	0.922
  avg:	0.9191
  max:	0.9926

 Identity of joined blocks:	0.935449
 Nucleotides in blocks:	9664358
  The percentage of input length:	75.69%

Distance from previous pre-pangenome (bp):	8296607
 The percentage of input length:	64.98%
Distance is sufficient to carry on

============================

[2021-Dec-14 11:51:25 UTC+03:00] BeginIteration 3, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	3999446

Stable blocks (represented in all genomes once, but not minor):
 fragments:	6243
 blocks:	2081
 Block identity:
  min:	0.8245
  median:	0.9215
  avg:	0.9186
  max:	0.9926

 Identity of joined blocks:	0.935085
 Nucleotides in blocks:	10644894
  The percentage of input length:	83.37%

Distance from previous pre-pangenome (bp):	1301121
 The percentage of input length:	10.19%
Distance is sufficient to carry on

============================

[2021-Dec-14 11:52:26 UTC+03:00] BeginIteration 4, AnchorJoinerFast

Length of all major blocks of at least 2 fragments:	4108759

Stable blocks (represented in all genomes once, but not minor):
 fragments:	6438
 blocks:	2146
 Block identity:
  min:	0.8245
  median:	0.9214
  avg:	0.9185
  max:	0.9926

 Identity of joined blocks:	0.934929
 Nucleotides in blocks:	10863023
  The percentage of input length:	85.08%

Distance from previous pre-pangenome (bp):	244123
 The percentage of input length:	1.91%
Distance is sufficient to carry on

============================

[2021-Dec-14 11:53:22 UTC+03:00] BeginIteration 5, AnchorJoiner

Length of all major blocks of at least 2 fragments:	4137120

Stable blocks (represented in all genomes once, but not minor):
 fragments:	6444
 blocks:	2148
 Block identity:
  min:	0.8245
  median:	0.9214
  avg:	0.9185
  max:	0.9955

 Identity of joined blocks:	0.93492
 Nucleotides in blocks:	10861691
  The percentage of input length:	85.07%

Distance from previous pre-pangenome (bp):	59711
 The percentage of input length:	0.47%
Distance is sufficient to carry on

============================

[2021-Dec-14 11:56:11 UTC+03:00] BeginIteration 6, AnchorJoiner

Length of all major blocks of at least 2 fragments:	4137192

Stable blocks (represented in all genomes once, but not minor):
 fragments:	6447
 blocks:	2149
 Block identity:
  min:	0.8245
  median:	0.9214
  avg:	0.9185
  max:	0.9955

 Identity of joined blocks:	0.934921
 Nucleotides in blocks:	10861609
  The percentage of input length:	85.07%

Distance from previous pre-pangenome (bp):	2615
 The percentage of input length:	0.02%
Distance is too low => stopping this loop

============================

[2021-Dec-14 11:57:06 UTC+03:00] BeginIteration 7, AnchorBlastJoiner

Length of all major blocks of at least 2 fragments:	4136526

Stable blocks (represented in all genomes once, but not minor):
 fragments:	6489
 blocks:	2163
 Block identity:
  min:	0.807
  median:	0.9214
  avg:	0.9182
  max:	0.9955

 Identity of joined blocks:	0.93488
 Nucleotides in blocks:	10864738
  The percentage of input length:	85.09%

Distance from previous pre-pangenome (bp):	58960
 The percentage of input length:	0.46%
Distance is sufficient to carry on

============================

[2021-Dec-14 11:59:10 UTC+03:00] BeginIteration 8, AnchorBlastJoiner

Length of all major blocks of at least 2 fragments:	4136602

Stable blocks (represented in all genomes once, but not minor):
 fragments:	6489
 blocks:	2163
 Block identity:
  min:	0.807
  median:	0.9214
  avg:	0.9181
  max:	0.9955

 Identity of joined blocks:	0.934871
 Nucleotides in blocks:	10865192
  The percentage of input length:	85.09%

Distance from previous pre-pangenome (bp):	724
 The percentage of input length:	0.01%
Distance is too low => stopping this loop

============================
[2021-Dec-14 12:02:30 UTC+03:00] StopInfo The pangenome has been constructed.

Blocks' lengths:	4747399
 major:	4738595
 minor:	8804

============================
All major blocks of at least 2 fragments:
 fragments:	2840
 blocks:	998
 fragments / blocks:	2.8456
 Block identity:
  min:	0.8058
  median:	0.9393
  avg:	0.9484
  max:	1

 Identity of joined blocks:	0.939832
 Block sizes:
  min:	2
  median:	3
  avg:	2.85
  max:	30

 Fragment lengths:
  min:	76
  median:	608
  avg:	4289.06
  max:	198866

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0051
  max:	0.3333

 GC content:
  min:	0.2255
  median:	0.4166
  avg:	0.4115
  max:	0.7321

 Nucleotides in blocks:	12180928
  The percentage of input length:	95.4%
 Total length of blocks:	4167455
  The percentage of total blocks' length:	87.78%

============================
Stable blocks (represented in all genomes once, but not minor):
 fragments:	1449
 blocks:	483
 fragments / blocks:	3
 Block identity:
  min:	0.807
  median:	0.9238
  avg:	0.9178
  max:	0.9955

 Identity of joined blocks:	0.932278
 Block sizes:  	3

 Fragment lengths:
  min:	80
  median:	2206
  avg:	7557.01
  max:	198866

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0.0007
  avg:	0.0062
  max:	0.3333

 GC content:
  min:	0.2322
  median:	0.4334
  avg:	0.4217
  max:	0.5631

 Nucleotides in blocks:	10950103
  The percentage of input length:	85.76%
 Total length of blocks:	3657231
  The percentage of total blocks' length:	77.03%


============================
Partial blocks (represented once in subset of genomes):
 fragments:	804
 blocks:	402
 fragments / blocks:	2
 Block identity:
  min:	0.8381
  median:	1
  avg:	0.9985
  max:	1

 Identity of joined blocks:	0.99928
 Block sizes:  	2

 Fragment lengths:
  min:	100
  median:	255
  avg:	1193.31
  max:	40867

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0003
  max:	0.072

 GC content:
  min:	0.2255
  median:	0.3816
  avg:	0.3896
  max:	0.7321

 Nucleotides in blocks:	959419
  The percentage of input length:	7.51%
 Total length of blocks:	479793
  The percentage of total blocks' length:	10.1%

============================
Blocks with repeats (at least two copies in at least one genome):
 fragments:	587
 blocks:	113
 fragments / blocks:	5.1946
 Block identity:
  min:	0.8058
  median:	0.8913
  avg:	0.9013
  max:	1

 Identity of joined blocks:	0.910343
 Block sizes:
  min:	2
  median:	4
  avg:	5.19
  max:	30

 Fragment lengths:
  min:	76
  median:	157
  avg:	462.36
  max:	3250

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0173
  max:	0.3176

 GC content:
  min:	0.2606
  median:	0.4306
  avg:	0.4453
  max:	0.6411

 Nucleotides in blocks:	271406
  The percentage of input length:	2.12%
 Total length of blocks:	30431
  The percentage of total blocks' length:	0.64%

============================
Unique (blocks of 1 fragment but not minor):
 fragments:	417
 blocks:	417
 Fragment lengths:
  min:	100
  median:	312
  avg:	1369.64
  max:	42985

 GC content:
  min:	0.1968
  median:	0.387
  avg:	0.392
  max:	0.7132

 Nucleotides in blocks:	571140
  The percentage of input length:	4.47%
 Total length of blocks:	571140
  The percentage of total blocks' length:	12.03%

============================
Minor blocks (too short to say smth about):
 fragments:	481
 blocks:	233
 fragments / blocks:	2.0643
 Block identity:
  min:	0
  median:	1
  avg:	0.8831
  max:	1

 Identity of joined blocks:	0.954674
 Block sizes:
  min:	1
  median:	2
  avg:	2.06
  max:	26

 Fragment lengths:
  min:	1
  median:	22
  avg:	32.53
  max:	99

 Fragment length spreading ((max - min) / avg) inside block:
  min:	0
  median:	0
  avg:	0.0404
  max:	1.25

 GC content:
  min:	0
  median:	0.4166
  avg:	0.4228
  max:	1

 Nucleotides in blocks:	15645
  The percentage of input length:	0.12%
 Total length of blocks:	8804
  The percentage of total blocks' length:	0.18%

The pangenome has been prepared for the next step: PostProcessing
.. done