RID: 6ZDYYTGJ013 Job Title:Q67XL4:RecName: Full=Uncharacterized CRM domain-containing... Program: BLASTP Query: RecName: Full=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Flags: Precursor [Arabidopsis thaliana] ID: Q67XL4.1(amino acid) Length: 444 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Sequences with E-value BETTER than threshold Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Uncharacterized CRM domain-containing protein... Arabidopsis ... thale cress 3702 590 590 100% 0.0 100.00 444 Q67XL4.1 RecName: Full=CRS2-associated factor 2, chloroplastic; AltName... Oryza sativa... Japanese rice 39947 189 258 32% 2e-52 19.87 607 Q657G7.1 RecName: Full=CRS2-associated factor 1, chloroplastic; AltName... Oryza sativa... Japanese rice 39947 189 259 32% 5e-52 25.48 701 Q5VMQ5.1 RecName: Full=CRS2-associated factor 2, chloroplastic; AltName... Zea mays NA 4577 186 251 32% 2e-51 19.87 611 Q84N48.1 RecName: Full=CRS2-associated factor 1, chloroplastic; AltName... Zea mays NA 4577 187 260 32% 2e-51 24.20 674 Q84N49.1 RecName: Full=CRM-domain containing factor CFM3A,... Arabidopsis ... thale cress 3702 184 305 32% 1e-49 37.16 881 F4J2U9.1 RecName: Full=CRM-domain containing factor CFM3,... Zea mays NA 4577 181 305 32% 1e-48 34.67 842 A7XN92.1 RecName: Full=CRM-domain containing factor CFM3,... Oryza sativa... Japanese rice 39947 181 304 32% 1e-48 34.90 886 Q2R1U8.1 RecName: Full=CRS2-associated factor 2, chloroplastic; AltName... Arabidopsis ... thale cress 3702 176 250 32% 3e-48 19.61 564 Q9LDA9.1 RecName: Full=Chloroplastic group IIA intron splicing... Oryza sativa... Japanese rice 39947 177 277 32% 8e-48 31.29 725 Q6YYA3.1 RecName: Full=CRM-domain containing factor CFM3B, chloroplasti... Arabidopsis ... thale cress 3702 178 283 32% 1e-47 35.81 907 F4JVH1.1 RecName: Full=CRM-domain containing factor CFM2, chloroplastic... Arabidopsis ... thale cress 3702 178 361 32% 2e-47 31.33 1011 Q8L7C2.1 RecName: Full=CRS2-associated factor 1, chloroplastic; AltName... Arabidopsis ... thale cress 3702 176 248 32% 2e-47 21.43 701 Q9SL79.2 RecName: Full=Chloroplastic group IIA intron splicing... Zea mays NA 4577 175 271 32% 6e-47 32.43 715 Q9FYT6.1 RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:... Oryza sativa... Japanese rice 39947 164 234 31% 6e-45 22.14 428 Q6Z4U2.1 RecName: Full=Chloroplastic group IIA intron splicing... Arabidopsis ... thale cress 3702 167 269 31% 4e-44 30.14 720 Q9LF10.2 RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:... Arabidopsis ... thale cress 3702 159 216 32% 9e-44 19.86 358 Q9FFU1.1 RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:... Oryza sativa... Japanese rice 39947 159 221 32% 2e-43 22.70 366 Q0J7J7.2 RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:... Arabidopsis ... thale cress 3702 154 221 32% 3e-41 22.30 405 Q8VYD9.1 RecName: Full=CRM-domain containing factor CFM9, mitochondrial... Arabidopsis ... thale cress 3702 156 156 38% 4e-41 43.20 491 Q9LT57.1 RecName: Full=RNA-binding protein YhbY [Escherichia coli K-12] Escherichia ... NA 83333 105 105 21% 1e-26 21.05 97 P0AGK4.1 RecName: Full=RNA-binding protein HI_1333 [Haemophilus... Haemophilus ... NA 71421 104 104 21% 5e-26 14.58 99 P71376.1 RecName: Full=Probable RNA-binding protein YqeI [Bacillus... Bacillus sub... NA 224308 97.9 97.9 20% 1e-23 15.38 96 P54454.1 RecName: Full=Probable RNA-binding protein PA4753 [Pseudomonas... Pseudomonas ... NA 208964 91.3 91.3 19% 3e-21 20.00 104 P95453.1 RecName: Full=Probable RNA-binding protein MJ0652... Methanocaldo... NA 243232 89.0 89.0 21% 4e-20 21.88 134 Q58068.1 Sequences with E-value WORSE than threshold Alignments: >RecName: Full=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q67XL4.1 Length: 444 Range 1: 1 to 444 Score:590 bits(1522), Expect:0.0, Method:Composition-based stats., Identities:444/444(100%), Positives:444/444(100%), Gaps:0/444(0%) Query 1 MGFLTAAIRVSTSAASMLLRRKSRQlgflasssplfssfnsMNRTISSCNIVCKVLHKES 60 MGFLTAAIRVSTSAASMLLRRKSRQLGFLASSSPLFSSFNSMNRTISSCNIVCKVLHKES Sbjct 1 MGFLTAAIRVSTSAASMLLRRKSRQLGFLASSSPLFSSFNSMNRTISSCNIVCKVLHKES 60 Query 61 LTRPMWNVSFLRSSSFHSTPARETGDDDISKSENSSSQDGDSCTklkrkklkgkrAVVrw 120 LTRPMWNVSFLRSSSFHSTPARETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRW Sbjct 61 LTRPMWNVSFLRSSSFHSTPARETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRW 120 Query 121 lkffrwkkkkeferMTSEEKIlnklrkarkkeerlmeTMKKLEPSESAETTHDPEILTPE 180 LKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPE Sbjct 121 LKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPE 180 Query 181 EHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVEL 240 EHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVEL Sbjct 181 EHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVEL 240 Query 241 ARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY 300 ARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY Sbjct 241 ARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY 300 Query 301 IPRleqelqllqaqaeTKRDYTNVKVDDNQERSEELKKIIerseecledeqeedeaglel 360 IPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLEL Sbjct 301 IPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLEL 360 Query 361 ATDSDLSDIFETDSELEDAKTERPLFLEEFEKFPAINNREDEDFGDLGKAKSEGEENDDD 420 ATDSDLSDIFETDSELEDAKTERPLFLEEFEKFPAINNREDEDFGDLGKAKSEGEENDDD Sbjct 361 ATDSDLSDIFETDSELEDAKTERPLFLEEFEKFPAINNREDEDFGDLGKAKSEGEENDDD 420 Query 421 KSPNFDEVDKMFLRAAFLLKKKRR 444 KSPNFDEVDKMFLRAAFLLKKKRR Sbjct 421 KSPNFDEVDKMFLRAAFLLKKKRR 444 >RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor [Oryza sativa Japonica Group] Sequence ID: Q657G7.1 Length: 607 Range 1: 211 to 365 Score:189 bits(479), Expect:2e-52, Method:Composition-based stats., Identities:31/156(20%), Positives:65/156(41%), Gaps:13/156(8%) Query 159 MKKLEPSESAETTHDP-EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217 + ++ P + E LT E +K + + +GR G+ ++ +H HW++ Sbjct 211 LARVSPGDGRSREEVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 270 Query 218 HQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM- 273 + +V + ++K + L +GG V+ G + +YRG+NY +P +M Sbjct 271 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIH-RVGGVVFLYRGRNYNPRTRPRYPLML 329 Query 274 -------SPRITLPRKKALDKSKCRDALRAVRKYIP 302 P++ + L K + + R + +P Sbjct 330 WKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLP 365 Range 2: 331 to 452 Score:69.0 bits(167), Expect:3e-11, Method:Composition-based stats., Identities:26/123(21%), Positives:51/123(41%), Gaps:3/123(2%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K P PE LT EE + G + + GIY ++ ++ ++ Sbjct 331 KPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSD 390 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV-QPPTEI-MSPRI 277 +++ + P + K+I +L L ++L I+M+RGK + + P + + P+I Sbjct 391 LVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDN-EQILMFRGKEWKSRYPKPLTLIPKI 449 Query 278 TLP 280 Sbjct 450 RKN 452 >RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor [Oryza sativa Japonica Group] Sequence ID: Q5VMQ5.1 Length: 701 Range 1: 165 to 320 Score:189 bits(479), Expect:5e-52, Method:Composition-based stats., Identities:40/157(25%), Positives:69/157(43%), Gaps:14/157(8%) Query 159 MKKLEPSESAETTHDP--EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + EP A + + E LT EE +K LK K + +GR G+ ++ N+H HWK Sbjct 165 LAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWK 224 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM 273 + + ++ K ++ + +L GG V+ H+G I ++RG+NY +P +M Sbjct 225 RKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIH-HQGGVIFLFRGRNYNYRTRPIYPLM 283 Query 274 --------SPRITLPRKKALDKSKCRDALRAVRKYIP 302 PR+ L + D + R+ P Sbjct 284 LWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPP 320 Range 2: 286 to 397 Score:70.1 bits(170), Expect:1e-11, Method:Composition-based stats., Identities:21/113(19%), Positives:45/113(39%), Gaps:1/113(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K P P+ LTP+E K G + +G+ G+Y ++ + ++ Sbjct 286 KPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACD 345 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 272 ++V + ++I +L L +L + I+M+RG ++ + Sbjct 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPL 397 >RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor [Zea mays] Sequence ID: Q84N48.1 Length: 611 Range 1: 215 to 369 Score:186 bits(472), Expect:2e-51, Method:Composition-based stats., Identities:31/156(20%), Positives:64/156(41%), Gaps:13/156(8%) Query 159 MKKLEPSESAETTHDP-EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217 + ++ P + E LTP E +K + + +GR G+ ++ +H HW++ Sbjct 215 LARVSPGDGRSREEVLGEPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 274 Query 218 HQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM- 273 + +V + ++K + L +GG V+ G + +YRG++Y +P +M Sbjct 275 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIH-RVGGVVFLYRGRHYDPKTRPRYPLML 333 Query 274 -------SPRITLPRKKALDKSKCRDALRAVRKYIP 302 P++ K + + R R +P Sbjct 334 WKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLP 369 Range 2: 335 to 456 Score:64.7 bits(156), Expect:7e-10, Method:Composition-based stats., Identities:22/123(18%), Positives:50/123(40%), Gaps:3/123(2%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K P P+ T EE + G + + GIY ++ ++ ++ Sbjct 335 KPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSD 394 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV-QPPTEI-MSPRI 277 +++ + P + K+I +L L ++L + I+M+RGK + + + + P++ Sbjct 395 LVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDD-EQILMHRGKEWKSRYSKPLTLIPKV 453 Query 278 TLP 280 Sbjct 454 PKN 456 >RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor [Zea mays] Sequence ID: Q84N49.1 Length: 674 Range 1: 165 to 320 Score:187 bits(474), Expect:2e-51, Method:Composition-based stats., Identities:38/157(24%), Positives:67/157(42%), Gaps:14/157(8%) Query 159 MKKLEPSESAETTHDP--EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + +EP + + D E LT EE +K LK K + +GR G+ ++ N+H HWK Sbjct 165 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 224 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM 273 + + ++ K ++ I +L GG V+ +G I ++RG+NY +P +M Sbjct 225 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIH-RQGGVIFLFRGRNYNYRTRPCFPLM 283 Query 274 --------SPRITLPRKKALDKSKCRDALRAVRKYIP 302 PR+ L + + + P Sbjct 284 LWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPP 320 Range 2: 286 to 418 Score:73.2 bits(178), Expect:2e-12, Method:Composition-based stats., Identities:22/134(16%), Positives:52/134(38%), Gaps:1/134(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K + P T P LTP+E G + +G+ G+Y ++ + ++ Sbjct 286 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 345 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITL 279 ++V + ++I +L L I+L + I+M+RG ++ + + Sbjct 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLENSYEVT 404 Query 280 PRKKALDKSKCRDA 293 +++ + + Sbjct 405 KVQESFSGKESNEK 418 >RecName: Full=CRM-domain containing factor CFM3A, chloroplastic/mitochondrial; AltName: Full=Protein CRM FAMILY MEMBER 3A; Short=AtCFM3a; Flags: Precursor [Arabidopsis thaliana] Sequence ID: F4J2U9.1 Length: 881 Range 1: 619 to 764 Score:184 bits(467), Expect:1e-49, Method:Composition-based stats., Identities:55/148(37%), Positives:92/148(62%), Gaps:6/148(4%) Query 159 MKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217 + K+E + AE DPE +T EE F + K+GLK K ++ +GRRG++ G + NMHLHWK Sbjct 619 LAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKY 678 Query 218 HQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEGNTIIMYRGKNYVQPPTEIMS 274 + +++++K T D VK++A+ L +GGI++ V +G II+YRG++Y +P ++ Sbjct 679 RELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPT--MLR 736 Query 275 PRITLPRKKALDKSKCRDALRAVRKYIP 302 P+ L ++KAL +S + K+I Sbjct 737 PKNLLTKRKALARSIELQRREGLLKHIS 764 Range 2: 208 to 328 Score:67.0 bits(162), Expect:2e-10, Method:Composition-based stats., Identities:25/126(20%), Positives:52/126(41%), Gaps:5/126(3%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K E S PE E + + + + + G+ Q + + WK + Sbjct 208 AKKENRYSLAEMTLPE----SELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAE 263 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITL 279 +++ I+ + ++++ L + TGG+V+ G +I +YRG +Y P + R Sbjct 264 IVRLKIEGASALNMRKMHEILEKKTGGLVI-WRSGTSISLYRGVSYELPSGKWNKQRREE 322 Query 280 PRKKAL 285 +A+ Sbjct 323 TPPEAV 328 Range 3: 404 to 511 Score:53.9 bits(128), Expect:2e-06, Method:Composition-based stats., Identities:27/109(25%), Positives:46/109(42%), Gaps:2/109(1%) Query 158 TMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217 + EP L P+E ++ + +GR QG+ M W+K Sbjct 404 AIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEK 463 Query 218 HQTLQVVIK-TFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNY 265 ++ IK + +A +L +LTGGI+L + ++ YRGKN+ Sbjct 464 SMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 511 >RecName: Full=CRM-domain containing factor CFM3, chloroplastic/mitochondrial; AltName: Full=Protein CRM FAMILY MEMBER 3; Short=ZmCFM3; Flags: Precursor [Zea mays] Sequence ID: A7XN92.1 Length: 842 Range 1: 564 to 711 Score:181 bits(459), Expect:1e-48, Method:Composition-based stats., Identities:52/150(35%), Positives:92/150(61%), Gaps:6/150(4%) Query 158 TMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + K+E + E + PE +T EE F + K+GL+ K ++ +GRRG++ G I NMHLHWK Sbjct 564 VLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 623 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEGNTIIMYRGKNYVQPPTEIM 273 + +++++K + +VK IA+ L +GGI++ V +G I+++RGKNY +P + + Sbjct 624 YRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSS--L 681 Query 274 SPRITLPRKKALDKSKCRDALRAVRKYIPR 303 PR L ++KAL +S +A+ ++ + Sbjct 682 RPRNLLSKRKALARSIELQRHQALSRHFAK 711 Range 2: 153 to 271 Score:74.0 bits(180), Expect:9e-13, Method:Composition-based stats., Identities:25/120(21%), Positives:49/120(40%), Gaps:2/120(1%) Query 162 LEPSESAETTHDPE-ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 220 P + T E L E ++ K+ VG G+ + ++ + WK + Sbjct 153 AAPRSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEV 212 Query 221 LQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLP 280 ++V + ++ L R TGG+V+ G ++ +YRG +Y +P S + + Sbjct 213 VRVKVSGTPALNMRLFHEILERKTGGLVI-WRSGTSVSLYRGVDYDEPEPTKKSKKNSQS 271 Range 3: 355 to 495 Score:50.5 bits(119), Expect:2e-05, Method:Composition-based stats., Identities:26/145(18%), Positives:54/145(37%), Gaps:5/145(3%) Query 159 MKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 218 M +P L+ + ++ + +GR QG+ M W+K Sbjct 355 MPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPHFALGRSRQLQGLANAMVKLWEKS 414 Query 219 QTLQVVIK-TFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRI 277 ++ +K + +A ++ +LTGG++L I+ YRGK++ + ++ + Sbjct 415 SIAKIALKRGVQLTTSERMAEDIKKLTGGVMLS-RNNEFIVFYRGKDF---LSSELAEVL 470 Query 278 TLPRKKALDKSKCRDALRAVRKYIP 302 + A +A R Y Sbjct 471 LERERLAKSLQDEEEARRKAASYFS 495 >RecName: Full=CRM-domain containing factor CFM3, chloroplastic/mitochondrial; AltName: Full=Protein CRM FAMILY MEMBER 3; Short=OsCFM3; Flags: Precursor [Oryza sativa Japonica Group] Sequence ID: Q2R1U8.1 Length: 886 Range 1: 572 to 718 Score:181 bits(458), Expect:1e-48, Method:Composition-based stats., Identities:52/149(35%), Positives:90/149(60%), Gaps:6/149(4%) Query 158 TMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + K+E + + E PE +T EE F + K+GL+ K ++ +GRRG++ G I NMHLHWK Sbjct 572 VLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 631 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEGNTIIMYRGKNYVQPPTEIM 273 + +++++K + +VK+IA+ L +GGI++ V +G I+++RGK+Y +P + Sbjct 632 YRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSK--L 689 Query 274 SPRITLPRKKALDKSKCRDALRAVRKYIP 302 PR L ++KAL +S A+ +I Sbjct 690 RPRNLLSKRKALARSIEIQRREALSHHIA 718 Range 2: 175 to 278 Score:73.6 bits(179), Expect:1e-12, Method:Composition-based stats., Identities:21/105(20%), Positives:45/105(42%), Gaps:1/105(0%) Query 176 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE 235 L E G++ K+ + VG G+ + ++ + W+ + +++ + ++ Sbjct 175 TLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRL 234 Query 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLP 280 L R TGG+V+ G ++ +YRG Y P + + T Sbjct 235 FHEILERKTGGLVI-WRSGTSVSLYRGVAYDIPEPTKGTSKNTQT 278 Range 3: 361 to 494 Score:50.1 bits(118), Expect:3e-05, Method:Composition-based stats., Identities:24/138(17%), Positives:54/138(39%), Gaps:5/138(3%) Query 158 TMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217 T+ +P L+ + ++ + +GR QG+ M W+K Sbjct 361 TVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEK 420 Query 218 HQTLQVVIK-TFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPR 276 ++ +K + +A ++ +LTGG++L + + YRGK+++ P ++ + Sbjct 421 SSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLSRNNDFMVF-YRGKDFLSPE---LAEK 476 Query 277 ITLPRKKALDKSKCRDAL 294 + + A A Sbjct 477 LLERERWAKSLQDEEQAR 494 >RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q9LDA9.1 Length: 564 Range 1: 187 to 338 Score:176 bits(447), Expect:3e-48, Method:Composition-based stats., Identities:30/153(20%), Positives:57/153(37%), Gaps:16/153(10%) Query 165 SESAETTHDPE----ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 220 E + E L E +K + V +GR G ++ +H HWK+ + Sbjct 187 RYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRV 246 Query 221 LQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM---- 273 +V K ++ + L TGG ++ G + ++RG+NY +P +M Sbjct 247 CKVRCKGVPTVDMNNVCRVLEEKTGGEIIH-RVGGVVYLFRGRNYNYRTRPQYPLMLWKP 305 Query 274 ----SPRITLPRKKALDKSKCRDALRAVRKYIP 302 P++ + L K + + + P Sbjct 306 AAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRP 338 Range 2: 304 to 440 Score:73.6 bits(179), Expect:9e-13, Method:Composition-based stats., Identities:27/138(20%), Positives:51/138(36%), Gaps:6/138(4%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K P PE LT EE + G + + + G+Y ++ ++ ++ Sbjct 304 KPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSS 363 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV-----QPPTEIMS 274 ++V P + K+I +L L ++L + I+M+RG+ + P +S Sbjct 364 LVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDD-EQILMWRGREWKSRFVDNPLIPSLS 422 Query 275 PRITLPRKKALDKSKCRD 292 T DK Sbjct 423 ETNTTNELDPSDKPSEEQ 440 >RecName: Full=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; AltName: Full=Chloroplastic RNA splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA SPLICING 1; Flags: Precursor [Oryza sativa Japonica Group] Sequence ID: Q6YYA3.1 Length: 725 Range 1: 546 to 690 Score:177 bits(450), Expect:8e-48, Method:Composition-based stats., Identities:46/147(31%), Positives:79/147(53%), Gaps:6/147(4%) Query 158 TMKKLEPSESAETTH-DPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + KL S S D E+LT EE + K+GLK +V +GRRG+++GVI +H HWK Sbjct 546 VLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWK 605 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHE---GNTIIMYRGKNYVQPPTEIM 273 + ++V+ K ++ ++ L TGG ++ + + II+YRGKNY +P Sbjct 606 HKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKS-- 663 Query 274 SPRITLPRKKALDKSKCRDALRAVRKY 300 +P L +++AL +S +++ + Sbjct 664 APSNLLTKREALQRSIEVQRRGSMKYF 690 Range 2: 354 to 442 Score:50.5 bits(119), Expect:2e-05, Method:Composition-based stats., Identities:27/90(30%), Positives:43/90(47%), Gaps:2/90(2%) Query 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIK-TFTPDEVKE 235 L EE Y K + +GR QG+ + W+K +V +K ++ Sbjct 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413 Query 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNY 265 +A L RLTGG V+ ++ II+YRGK++ Sbjct 414 MARNLKRLTGGTVILRNKDY-IIIYRGKDF 442 Range 3: 155 to 243 Score:48.9 bits(115), Expect:7e-05, Method:Composition-based stats., Identities:19/90(21%), Positives:31/90(34%), Gaps:2/90(2%) Query 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHW-KKHQTLQVVIKTFTPDEVKE 235 L E + + + + GI V+ + W K + V I + Sbjct 155 LEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDR 214 Query 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNY 265 L TGG+V+ G +YRG +Y Sbjct 215 AREILEIKTGGLVV-WTRGGIHFVYRGSSY 243 >RecName: Full=CRM-domain containing factor CFM3B, chloroplastic; AltName: Full=Protein CRM FAMILY MEMBER 3B; Short=AtCFM3b; Flags: Precursor [Arabidopsis thaliana] Sequence ID: F4JVH1.1 Length: 907 Range 1: 645 to 790 Score:178 bits(451), Expect:1e-47, Method:Composition-based stats., Identities:53/148(36%), Positives:91/148(61%), Gaps:6/148(4%) Query 158 TMKKLE-PSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + K+E + AE D E +T EE F + K+GLK K ++ +GRRG++ G + NMHLHWK Sbjct 645 ALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWK 704 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEGNTIIMYRGKNYVQPPTEIM 273 + +++++K T + +++A+ L +GGI++ V +G +I+YRGK+Y +P T + Sbjct 705 YRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTT--L 762 Query 274 SPRITLPRKKALDKSKCRDALRAVRKYI 301 P+ L ++KAL +S A+ K+I Sbjct 763 RPKNLLTKRKALARSLELQKREALIKHI 790 Range 2: 209 to 307 Score:57.4 bits(137), Expect:2e-07, Method:Composition-based stats., Identities:24/107(22%), Positives:45/107(42%), Gaps:8/107(7%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K E S L+ E + + K+ + V G+ Q V+ + WK + Sbjct 209 AKKESRYSLAEM----TLSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSE 264 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV 266 +++ I+ + ++ + L R TGG+V+ G +I +Y NY Sbjct 265 IVRLKIEGSSALNMRRMHEILERKTGGLVI-WRSGTSIALY---NYK 307 Range 3: 407 to 511 Score:48.2 bits(113), Expect:1e-04, Method:Composition-based stats., Identities:25/106(24%), Positives:45/106(42%), Gaps:2/106(1%) Query 161 KLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 220 EP A L +E ++ + +GR QG+ M W+K Sbjct 407 GYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLI 466 Query 221 LQVVIK-TFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNY 265 +V +K + +A ++ RLTGG++L + ++ YRGK++ Sbjct 467 AKVALKRGVQLTTSERMAEDIKRLTGGMLLS-RNKDFLVFYRGKSF 511 >RecName: Full=CRM-domain containing factor CFM2, chloroplastic; AltName: Full=Protein CRM FAMILY MEMBER 2; Short=AtCFM2; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q8L7C2.1 Length: 1011 Range 1: 559 to 706 Score:178 bits(452), Expect:2e-47, Method:Composition-based stats., Identities:47/150(31%), Positives:88/150(58%), Gaps:6/150(4%) Query 158 TMKKLEPSESAETTH-DPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + LE ES + + D E +T +E + K+GLK K ++ +GRRG++ G I NMHLHWK Sbjct 559 VLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWK 618 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVH---EGNTIIMYRGKNYVQPPTEIM 273 + ++++ ++ + ++A L +GGI++ V +G II+YRGKNY +P + Sbjct 619 YRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQ--CL 676 Query 274 SPRITLPRKKALDKSKCRDALRAVRKYIPR 303 P+ L +++AL +S ++++ ++ + Sbjct 677 RPQTLLSKREALKRSVEAQRRKSLKLHVLK 706 Range 2: 165 to 256 Score:83.2 bits(204), Expect:1e-15, Method:Composition-based stats., Identities:24/93(26%), Positives:47/93(50%), Gaps:1/93(1%) Query 176 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE 235 L P E +G++ + +G+ GI +G++ +H W+ + +++ + + +K Sbjct 165 TLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKR 224 Query 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 268 L TGG+V+ G+ I++YRG NY P Sbjct 225 THDVLETKTGGLVI-WRSGSKILLYRGVNYQYP 256 Range 3: 378 to 483 Score:51.6 bits(122), Expect:1e-05, Method:Composition-based stats., Identities:24/122(20%), Positives:51/122(41%), Gaps:17/122(13%) Query 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIK-TFTPDEVKE 235 LT +E ++G + +GR QG+ + + W+K + ++ +K + Sbjct 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437 Query 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALR 295 +A EL LTGG ++ + + I++YRGK++ A+ + + Sbjct 438 MAEELKWLTGGTLISRDK-DFIVLYRGKDF---------------LPSAVSSAIEERRRQ 481 Query 296 AV 297 + Sbjct 482 TM 483 Range 4: 875 to 962 Score:48.2 bits(113), Expect:1e-04, Method:Composition-based stats., Identities:23/89(26%), Positives:39/89(43%), Gaps:4/89(4%) Query 177 LTPEEHFYYLKMGLKCK--NYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE-V 233 L+ E K LK K VGR + G+ + +H++K+ V +K V Sbjct 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934 Query 234 KEIAVELARLTGGIVLDVHEGNTIIMYRG 262 +E+ +L TG +++ I +YRG Sbjct 935 QEVIAKLKEETGALLVSQEPSKVI-LYRG 962 >RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q9SL79.2 Length: 701 Range 1: 226 to 378 Score:176 bits(446), Expect:2e-47, Method:Composition-based stats., Identities:33/154(21%), Positives:63/154(40%), Gaps:13/154(8%) Query 161 KLEPSESAETTHDP-EILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 + P E LT EE + LK + +GR G+ ++ N+H WK+ + Sbjct 226 GVGPRYVYSKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRR 285 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM--- 273 ++ K ++ + +L GG V+ G + ++RG+NY +P +M Sbjct 286 VCKIKCKGVCTVDMDNVCEQLEEKIGGKVI-YRRGGVLFLFRGRNYNHRTRPRFPLMLWK 344 Query 274 -----SPRITLPRKKALDKSKCRDALRAVRKYIP 302 PR+ + L + + + R R+ +P Sbjct 345 PVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMP 378 Range 2: 344 to 449 Score:72.0 bits(175), Expect:3e-12, Method:Composition-based stats., Identities:18/107(17%), Positives:47/107(43%), Gaps:1/107(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K + P PE LT +E + G + +G+ G+Y ++ N+ ++ + Sbjct 344 KPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV 266 +++ + + ++I +L L +++ I+++RG+ + Sbjct 404 LVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFEN-EQILIWRGREWK 449 >RecName: Full=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; AltName: Full=Chloroplastic RNA splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA SPLICING 1; Flags: Precursor [Zea mays] Sequence ID: Q9FYT6.1 Length: 715 Range 1: 544 to 689 Score:175 bits(443), Expect:6e-47, Method:Composition-based stats., Identities:48/148(32%), Positives:78/148(52%), Gaps:6/148(4%) Query 158 TMKKLEPSE-SAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWK 216 + KL S +E + D E LT EE + ++G K V +GRRGI+ GVI +H HWK Sbjct 544 ALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWK 603 Query 217 KHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHE---GNTIIMYRGKNYVQPPTEIM 273 + ++V+ K ++ A L TGGI++ V + + II+YRGKNY +P Sbjct 604 HKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSF 663 Query 274 SPRITLPRKKALDKSKCRDALRAVRKYI 301 S L +++AL +S +++ ++ Sbjct 664 S--NLLTKREALRRSIEVQRRGSMKYFV 689 Range 2: 351 to 440 Score:48.6 bits(114), Expect:7e-05, Method:Composition-based stats., Identities:25/91(27%), Positives:43/91(47%), Gaps:2/91(2%) Query 176 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIK-TFTPDEVK 234 L EE Y K+ + +GR QG+ + W+K ++ +K + Sbjct 351 TLADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNE 410 Query 235 EIAVELARLTGGIVLDVHEGNTIIMYRGKNY 265 ++A L LTGG V+ + + II+YRGK++ Sbjct 411 QMAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440 Range 3: 159 to 260 Score:47.4 bits(111), Expect:2e-04, Method:Composition-based stats., Identities:20/103(19%), Positives:35/103(33%), Gaps:2/103(1%) Query 166 ESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK-HQTLQVV 224 + E T L E ++ + + G+ V+ + W + V Sbjct 159 KPREPTRAETELETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVR 218 Query 225 IKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQ 267 I + L TGG+V+ +G+ +YRG Y Q Sbjct 219 IVEPLRRSMDRAREILEIKTGGLVV-WTKGDMHFVYRGSKYQQ 260 >RecName: Full=CRS2-associated factor 1, mitochondrial; Flags: Precursor [Oryza sativa Japonica Group] Sequence ID: Q6Z4U2.1 Length: 428 Range 1: 155 to 293 Score:164 bits(416), Expect:6e-45, Method:Composition-based stats., Identities:31/140(22%), Positives:63/140(45%), Gaps:14/140(10%) Query 175 EILTPEEHFYYLKMGLK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE 232 E LTP E + + K K + +GR G+ ++ ++H HWK + ++V + Sbjct 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214 Query 233 VKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM--------SPRITLPR 281 ++ + +L TGG+++ H G +I+YRG++Y +P +M PR+ Sbjct 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTT 273 Query 282 KKALDKSKCRDALRAVRKYI 301 + L + ++ + Sbjct 274 IEGLTVEETKEMRKKGLYVP 293 Range 2: 260 to 365 Score:69.4 bits(168), Expect:2e-11, Method:Composition-based stats., Identities:25/107(23%), Positives:45/107(42%), Gaps:1/107(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K EP E LT EE K GL + + G Y ++ + + + Sbjct 260 KPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDE 319 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV 266 +++ K + ++I V+L L I++ + II++RGK+Y Sbjct 320 LVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDK-EQIIVWRGKDYN 365 >RecName: Full=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; AltName: Full=Chloroplastic RNA splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA SPLICING 1; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q9LF10.2 Length: 720 Range 1: 553 to 697 Score:167 bits(423), Expect:4e-44, Method:Composition-based stats., Identities:44/146(30%), Positives:80/146(54%), Gaps:5/146(3%) Query 159 MKKLEPSE-SAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKK 217 + KL +E D EILT EE ++GLK + + +GRRG++ GV+ +H HWK Sbjct 553 LFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKH 612 Query 218 HQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHE---GNTIIMYRGKNYVQPPTEIMS 274 + +V+ V A L + G+++ + + G+ I++YRGKNY +P +++M+ Sbjct 613 REVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMA 672 Query 275 PRITLPRKKALDKSKCRDALRAVRKY 300 + L ++KAL +S L +++ + Sbjct 673 -QNLLTKRKALQRSVVMQRLGSLKFF 697 Range 2: 352 to 449 Score:52.0 bits(123), Expect:7e-06, Method:Composition-based stats., Identities:26/99(26%), Positives:45/99(45%), Gaps:2/99(2%) Query 168 AETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIK- 226 + LT EE Y + + +GR QG+ + W+K ++ IK Sbjct 352 RCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKW 411 Query 227 TFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNY 265 +E+A EL LTGG+++ + I++YRGK++ Sbjct 412 GALNTNNEEMADELRYLTGGVLI-LRNKYLIVLYRGKDF 449 Range 3: 215 to 291 Score:50.1 bits(118), Expect:3e-05, Method:Composition-based stats., Identities:15/78(19%), Positives:35/78(44%), Gaps:1/78(1%) Query 185 YLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLT 244 + K + +V V + G+ + V+ + WK ++ V ++ + T Sbjct 215 LRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKT 274 Query 245 GGIVLDVHEGNTIIMYRG 262 GG+V+ + + +++YRG Sbjct 275 GGLVV-LSKKEFLVVYRG 291 >RecName: Full=CRS2-associated factor 2, mitochondrial; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q9FFU1.1 Length: 358 Range 1: 141 to 280 Score:159 bits(403), Expect:9e-44, Method:Composition-based stats., Identities:28/141(20%), Positives:56/141(39%), Gaps:14/141(9%) Query 175 EILTPEEHFYY--LKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE 232 E LT +E C + +G+ G+ +I ++H HWKK + +++ + Sbjct 141 ETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLD 200 Query 233 VKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM--------SPRITLPR 281 + I L +GG ++ N +++YRG+NY +P +M PR+ Sbjct 201 MDNICFHLEEKSGGKIV-YRNINILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNV 259 Query 282 KKALDKSKCRDALRAVRKYIP 302 L+ + ++ Sbjct 260 ADGLEFEETKEMRNRGLHSPA 280 Range 2: 246 to 348 Score:56.6 bits(135), Expect:1e-07, Method:Composition-based stats., Identities:20/104(19%), Positives:42/104(40%), Gaps:1/104(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K P + + L EE GL + + R G+Y V+ + ++ + Sbjct 246 KPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEE 305 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGK 263 +++ + K I V+L + + + + + II++RGK Sbjct 306 IVRLDCTHVGMSDCKRIGVKLKEMVPCVPI-LFKDEQIILWRGK 348 >RecName: Full=CRS2-associated factor 2, mitochondrial; Flags: Precursor [Oryza sativa Japonica Group] Sequence ID: Q0J7J7.2 Length: 366 Range 1: 143 to 282 Score:159 bits(402), Expect:2e-43, Method:Composition-based stats., Identities:32/141(23%), Positives:55/141(39%), Gaps:14/141(9%) Query 175 EILTPEEHFYY--LKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE 232 E L EE C + +G+ G+ +I ++H HWK+ + +++ + Sbjct 143 EPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLD 202 Query 233 VKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYV---QPPTEIM--------SPRITLPR 281 + I L TGG V+ N +I+YRG+NY +P +M PR+ Sbjct 203 MDNICFHLEDKTGGKVI-YRNINILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNV 261 Query 282 KKALDKSKCRDALRAVRKYIP 302 L K ++ P Sbjct 262 ADGLTFEKTKELRNTGLNSSP 282 Range 2: 248 to 350 Score:62.4 bits(150), Expect:2e-09, Method:Composition-based stats., Identities:24/104(23%), Positives:44/104(42%), Gaps:1/104(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K L P + + LT E+ GL + + R G+Y V+ + +K + Sbjct 248 KPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVE 307 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGK 263 +++ + K+I V+L L V + + II++RGK Sbjct 308 VVRLDCSHVGSSDCKKIGVKLRDLV-PCVPLLFKDEQIILWRGK 350 >RecName: Full=CRS2-associated factor 1, mitochondrial; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q8VYD9.1 Length: 405 Range 1: 159 to 296 Score:154 bits(389), Expect:3e-41, Method:Composition-based stats., Identities:31/139(22%), Positives:59/139(42%), Gaps:14/139(10%) Query 177 LTPEEHFYYLKMGL--KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVK 234 LT E + +++ K K V +GR G+ ++ +++ HWK + ++V ++K Sbjct 159 LTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMK 218 Query 235 EIAVELARLTGGIVLDVHEGNTIIMYRGKNY---VQPPTEIM--------SPRITLPRKK 283 + L T G V+ H G T+++YRG+NY +P +M PR+ Sbjct 219 NVIFHLEDKTFGQVVSKHSG-TLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTID 277 Query 284 ALDKSKCRDALRAVRKYIP 302 L + + + Sbjct 278 GLSIDETKAMRKKGLAVPA 296 Range 2: 262 to 370 Score:67.4 bits(163), Expect:6e-11, Method:Composition-based stats., Identities:20/110(18%), Positives:44/110(40%), Gaps:1/110(0%) Query 160 KKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219 K EP + L+ +E K GL + + G Y ++ + + + Sbjct 262 KPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSE 321 Query 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPP 269 +++ + K+I +L L I++ + ++++RGK+Y P Sbjct 322 LVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDK-EQVVIWRGKDYKPPK 370 >RecName: Full=CRM-domain containing factor CFM9, mitochondrial; AltName: Full=Protein CRM FAMILY MEMBER 9; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q9LT57.1 Length: 491 Range 1: 50 to 216 Score:156 bits(393), Expect:4e-41, Method:Composition-based stats., Identities:73/169(43%), Positives:113/169(66%), Gaps:2/169(1%) Query 135 MTSEEKIlnklrkarkkeerlmeTMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 194 MT EE+++ L++A+KK L++ +KK + E HDPE+ T E+ + K+G K KN Sbjct 50 MTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKN 109 Query 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 254 YVPVG RG++ GV+ NMH+HWK H+T+QV F +++KE+A +ARL+GG+V+++H Sbjct 110 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNV 169 Query 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPR 303 TIIM+RG+NY QP + P TL ++KAL K++ AL + + I + Sbjct 170 KTIIMFRGRNYRQPKN--LIPVNTLTKRKALFKARFEQALESQKLNIKK 216 >RecName: Full=RNA-binding protein YhbY [Escherichia coli K-12] Sequence ID: P0AGK4.1 Length: 97 >RecName: Full=RNA-binding protein YhbY [Escherichia coli CFT073] Sequence ID: P0AGK5.1 Length: 97 >RecName: Full=RNA-binding protein YhbY [Escherichia coli O157:H7] Sequence ID: P0AGK6.1 Length: 97 >RecName: Full=RNA-binding protein YhbY [Shigella flexneri] Sequence ID: P0AGK7.1 Length: 97 Range 1: 3 to 96 Score:105 bits(263), Expect:1e-26, Method:Composition-based stats., Identities:20/95(21%), Positives:41/95(43%), Gaps:1/95(1%) Query 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 236 L+ ++ + + K V +G G+ +GV+ + + H+ ++V I T + I Sbjct 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62 Query 237 AVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTE 271 + R TG + V G T+++YR + Sbjct 63 VEAIVRETGACNVQV-IGKTLVLYRPTKERKISLP 96 >RecName: Full=RNA-binding protein HI_1333 [Haemophilus influenzae Rd KW20] Sequence ID: P71376.1 Length: 99 Range 1: 3 to 97 Score:104 bits(259), Expect:5e-26, Method:Composition-based stats., Identities:14/96(15%), Positives:37/96(38%), Gaps:1/96(1%) Query 176 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE 235 L+ ++ + + V +G G+ +GV+ + H+ ++V + + + Sbjct 3 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 62 Query 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTE 271 I + R T + G+ +++YR + Sbjct 63 IINAIVRETKAAQVQ-TIGHILVLYRPSEEAKIQLP 97 >RecName: Full=Probable RNA-binding protein YqeI [Bacillus subtilis subsp. subtilis str. 168] Sequence ID: P54454.1 Length: 96 Range 1: 2 to 91 Score:97.9 bits(242), Expect:1e-23, Method:Composition-based stats., Identities:14/91(15%), Positives:38/91(41%), Gaps:1/91(1%) Query 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 236 LT ++ + VG+ G+ +I + + + ++V + ++ ++ Sbjct 2 LTGKQKRFLRSKAHHLTPIFQVGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDKNDV 61 Query 237 AVELARLTGGIVLDVHEGNTIIMYRGKNYVQ 267 A L + + ++ GNTI++Y+ + Sbjct 62 AEALVKGSRSQLVQ-TIGNTIVLYKESKENK 91 >RecName: Full=Probable RNA-binding protein PA4753 [Pseudomonas aeruginosa PAO1] Sequence ID: P95453.1 Length: 104 Range 1: 3 to 86 Score:91.3 bits(225), Expect:3e-21, Method:Composition-based stats., Identities:17/85(20%), Positives:37/85(43%), Gaps:1/85(1%) Query 177 LTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEI 236 LT E+ + +G K + V G+ +GV+ + H+ ++V + D+ + + Sbjct 3 LTQEQKKQFKSIGHHLKPVLIVAENGLTEGVLAELERALNDHELIKVKLALAERDDRRAL 62 Query 237 AVELARLTGGIVLDVHEGNTIIMYR 261 EL + ++ G ++YR Sbjct 63 LDELCAQSRSDLVQ-SIGKMALVYR 86 >RecName: Full=Probable RNA-binding protein MJ0652 [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q58068.1 Length: 134 Range 1: 6 to 99 Score:89.0 bits(219), Expect:4e-20, Method:Composition-based stats., Identities:21/96(22%), Positives:40/96(41%), Gaps:4/96(4%) Query 170 TTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIK--T 227 T LT + + V VG+ G + VI + K+ ++V ++ Sbjct 6 TEEQKRKLTGKMKRMLRAKAHHLEPVVWVGKEG-SEKVIKEVDRQLKERGLIKVKVRKAA 64 Query 228 FTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGK 263 ++ EIA +LA+ V+ V G+ I ++R + Sbjct 65 LLYEDKYEIAEKLAKACDAEVVSV-VGHVITLFRPR 99