BLASTN 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: GCA_009859135.1_ASM985913v1_genomic.fna
           498 sequences; 290,468,881 total letters



Query= CP014225.1:complement(926804-928359)|16S_rRNA|Escherichia coli str.
K-12 substr. MG1655 strain K-12

Length=1556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

WHNR01000107.1 Formica selysi isolate DE90_pool_M Contig080, whol...  56.3    9e-06


>WHNR01000107.1 Formica selysi isolate DE90_pool_M Contig080, 
whole genome shotgun sequence
Length=179800

 Score = 56.3 bits (61),  Expect = 9e-06
 Identities = 38/43 (88%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1494    AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA  1536
               |||||||||||||||  ||||||| ||||||||||  ||||||
Sbjct  131916  AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA  131874


 Score = 56.3 bits (61),  Expect = 9e-06
 Identities = 38/43 (88%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1494    AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA  1536
               |||||||||||||||  ||||||| ||||||||||  ||||||
Sbjct  143110  AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA  143068


 Score = 53.6 bits (58),  Expect = 3e-05
 Identities = 74/104 (71%), Gaps = 0/104 (0%)
 Strand=Plus/Minus

Query  1306    GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA  1365
               ||||||| |  ||||| |   | |||||||   |||||  | ||||| || |  ||| ||
Sbjct  120777  GGATTGGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAA  120718

Query  1366    TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC  1409
                  | || ||| ||||| || |  | ||||||||||||||||||
Sbjct  120717  GCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC  120674


 Score = 53.6 bits (58),  Expect = 3e-05
 Identities = 74/104 (71%), Gaps = 0/104 (0%)
 Strand=Plus/Minus

Query  1306    GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA  1365
               ||||||| |  ||||| |   | |||||||   |||||  | ||||| || |  ||| ||
Sbjct  132132  GGATTGGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAA  132073

Query  1366    TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC  1409
                  | || ||| ||||| || |  | ||||||||||||||||||
Sbjct  132072  GCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC  132029


 Score = 53.6 bits (58),  Expect = 3e-05
 Identities = 74/104 (71%), Gaps = 0/104 (0%)
 Strand=Plus/Minus

Query  1306    GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA  1365
               ||||||| |  ||||| |   | |||||||   |||||  | ||||| || |  ||| ||
Sbjct  143326  GGATTGGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAA  143267

Query  1366    TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC  1409
                  | || ||| ||||| || |  | ||||||||||||||||||
Sbjct  143266  GCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC  143223


 Score = 51.8 bits (56),  Expect = 1e-04
 Identities = 37/43 (86%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1494    AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA  1536
               |||||||||||||||  ||||||| |||| |||||  ||||||
Sbjct  120561  AAGTCGTAACAAGGTTTCCGTAGGTGAACTTGCGGAAGGATCA  120519



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 442941500575


  Database: GCA_009859135.1_ASM985913v1_genomic.fna
    Posted date:  Dec 1, 2024  2:06 AM
  Number of letters in database: 290,468,881
  Number of sequences in database:  498



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2