RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change)

            Strand I                    Strand II          Helix
   1   (0.004) ....>C:.501_:[..G]G-----C[..C]:.572_:C<.... (0.005)     |
   2   (0.007) ....>C:.502_:[..G]G-*---U[..U]:.571_:C<.... (0.008)     |
   3   (0.003) ....>C:.503_:[..C]C-----G[..G]:.570_:C<.... (0.003)     |
   4   (0.003) ....>C:.504_:[..C]C-----G[..G]:.569_:C<.... (0.007)     |
   5   (0.005) ....>C:.505_:[..C]C-----G[..G]:.568_:C<.... (0.009)     |
   6   (0.005) ....>C:.506_:[..C]C-----G[..G]:.567_:C<.... (0.003)     |
   7   (0.004) ....>C:.507_:[..A]A-----U[..U]:.566_:C<.... (0.006)     |
   8   (0.004) ....>C:.549_:[..G]G-----C[..C]:.565_:C<.... (0.002)     |
   9   (0.001) ....>C:.550_:[..G]G-----C[..C]:.564_:C<.... (0.003)     |
  10   (0.007) ....>C:.551_:[..G]G-----C[..C]:.563_:C<.... (0.002)     |
  11   (0.003) ....>C:.552_:[..G]G-----C[..C]:.562_:C<.... (0.003)     |
  12   (0.005) ....>C:.553_:[..G]G-----C[..C]:.561_:C<.... (0.004)     |
  13   (0.003) ....>C:.554_:[..U]U-**--A[..A]:.558_:C<.... (0.008)     |
  14   (0.003) ....>C:.555_:[..U]U-**+-G[..G]:.518_:C<.... (0.003)     x
  15   (0.003) ....>C:.538_:[..A]A-**--C[..C]:.532_:C<.... (0.005)     |
  16   (0.005) ....>C:.539_:[..G]G-----C[..C]:.531_:C<.... (0.004)     |
  17   (0.003) ....>C:.540_:[..G]G-----C[..C]:.530_:C<.... (0.004)     |
  18   (0.005) ....>C:.541_:[..C]C-----G[..G]:.529_:C<.... (0.005)     |
  19   (0.004) ....>C:.542_:[..C]C-----G[..G]:.528_:C<.... (0.005)     |
  20   (0.006) ....>C:.543_:[..G]G-----C[..C]:.527_:C<.... (0.003)     |
  21   (0.005) ....>C:.544_:[..A]A-**--G[..G]:.526_:C<.... (0.004)     |
  22   (0.006) ....>C:.510_:[..G]G-----C[..C]:.525_:C<.... (0.004)     |
  23   (0.004) ....>C:.511_:[..U]U-----A[..A]:.524_:C<.... (0.003)     |
  24   (0.002) ....>C:.512_:[..C]C-----G[..G]:.523_:C<.... (0.011)     |
  25   (0.004) ....>C:.513_:[..U]U-*---G[..G]:.522_:C<.... (0.007)     |
  26   (0.004) ....>C:.508_:[..U]U-**--A[..A]:.546_:C<.... (0.003)     |
  27   (0.007) ....>C:.514_:[..A]A-**--A[..A]:.521_:C<.... (0.005)     |
  28   (0.018) ....>C:.515_:[..G]G-**+-C[..C]:.548_:C<.... (0.012)     x
  29   (0.004) ....>C:.519_:[..G]G-----C[..C]:.556_:C<.... (0.002)     +
  30   (0.007) ....>D:.501_:[..G]G-----C[..C]:.572_:D<.... (0.006)     |
  31   (0.007) ....>D:.502_:[..G]G-*---U[..U]:.571_:D<.... (0.003)     |
  32   (0.004) ....>D:.503_:[..C]C-----G[..G]:.570_:D<.... (0.006)     |
  33   (0.003) ....>D:.504_:[..C]C-----G[..G]:.569_:D<.... (0.006)     |
  34   (0.005) ....>D:.505_:[..C]C-----G[..G]:.568_:D<.... (0.010)     |
  35   (0.005) ....>D:.506_:[..C]C-----G[..G]:.567_:D<.... (0.004)     |
  36   (0.005) ....>D:.507_:[..A]A-----U[..U]:.566_:D<.... (0.005)     |
  37   (0.003) ....>D:.549_:[..G]G-----C[..C]:.565_:D<.... (0.005)     |
  38   (0.004) ....>D:.550_:[..G]G-----C[..C]:.564_:D<.... (0.002)     |
  39   (0.004) ....>D:.551_:[..G]G-----C[..C]:.563_:D<.... (0.002)     |
  40   (0.005) ....>D:.552_:[..G]G-----C[..C]:.562_:D<.... (0.001)     |
  41   (0.003) ....>D:.553_:[..G]G-----C[..C]:.561_:D<.... (0.004)     |
  42   (0.002) ....>D:.554_:[..U]U-**--A[..A]:.558_:D<.... (0.009)     |
  43   (0.003) ....>D:.555_:[..U]U-**+-G[..G]:.518_:D<.... (0.006)     x
  44   (0.004) ....>D:.538_:[..A]A-**--C[..C]:.532_:D<.... (0.004)     |
  45   (0.008) ....>D:.539_:[..G]G-----C[..C]:.531_:D<.... (0.008)     |
  46   (0.004) ....>D:.540_:[..G]G-----C[..C]:.530_:D<.... (0.004)     |
  47   (0.005) ....>D:.541_:[..C]C-----G[..G]:.529_:D<.... (0.006)     |
  48   (0.004) ....>D:.542_:[..C]C-----G[..G]:.528_:D<.... (0.005)     |
  49   (0.004) ....>D:.543_:[..G]G-----C[..C]:.527_:D<.... (0.006)     |
  50   (0.009) ....>D:.544_:[..A]A-**--G[..G]:.526_:D<.... (0.011)     |
  51   (0.004) ....>D:.510_:[..G]G-----C[..C]:.525_:D<.... (0.005)     |
  52   (0.003) ....>D:.511_:[..U]U-----A[..A]:.524_:D<.... (0.006)     |
  53   (0.003) ....>D:.512_:[..C]C-----G[..G]:.523_:D<.... (0.005)     |
  54   (0.004) ....>D:.513_:[..U]U-*---G[..G]:.522_:D<.... (0.010)     |
  55   (0.004) ....>D:.508_:[..U]U-**--A[..A]:.546_:D<.... (0.003)     |
  56   (0.007) ....>D:.514_:[..A]A-**--A[..A]:.521_:D<.... (0.005)     |
  57   (0.016) ....>D:.515_:[..G]G-**+-C[..C]:.548_:D<.... (0.007)     x
  58   (0.004) ....>D:.519_:[..G]G-----C[..C]:.556_:D<.... (0.003)     +

Note: This structure contains 18[14] non-Watson-Crick base-pairs.