Protein visualisation. Jmol.

		

Visualisation of Xanthomonas citri pv. citri carboxylesterase protein

		
		

Script link

		

		

Parameters of hydrogen bond between main atoms in secondary structure:

		
		

Alpha helix

		
# Atoms denomination Connection lenth Angle N-O-C
1 N(237Phe)-O(234Ser) 3.03 132.5
2 N(234Ser)-O(230Ser) 2.78 168.2
3 N(227Asp)-O(224Lys) 2.97 134.2
		

Beta sheets

		
# Atoms denomination Connection lenth Angle N-O-C
1 N(183Leu)-O(247Leu) 2.76 166.3
2 N(182Val)-O(153Val) 3.01 155.1
3 N(250Thr)-O(277Val) 2.90 162.2

		
According to received data average value of hydrogen bond's lenth in alpha helix is 2,93; average angle is 145,0. Average value of hydrogen bond's lenth in beta sheet is 2,89; average angle is 161,2.
		

© Popov Nikita 2016