Here you can find some information about my study process
Term 1
The Bandicoot papillomatosis carcinomatosis virus's genom description
Xanthomonas citri pv.citri bacterium
Xanthomonas citri pv.citri AKM25432.1 protein (carboxylesterase) description
Excel
Term 2
Protein visualisation.
The interior of proteins and macromolecular complexes
Contact atlas
Uniprot. Protein description.
Proteomes and EMBOSS.
Alignment as evolution's reflection
Pairwise alignment
Similarity search. Blast. E-value.
Plural alignment's algorithms. Pfam.
Term 3
MarvinSketch drawing.
A- and B- DNA forms and RNA structure.
RNA secondary structure. DNA-protein contacts.
Sanger sequencing.
Nucleotide database.
Nucleotide BLAST.
EMBOSS.
Genome rearrangements.
Resequencing and SNP search.
Transcriptome analysis.
De novo genome assembly.
Term 4
Phylogenetic tree & Phylogeny reconstruction.
Construction and analysis of a tree containing paralogs.
Signals, motifs, PWM.
PSI-BLAST and Prosite.
Domains. PFAM. HMM-profile.
ROC-curve.
KEGG pathways.
Genomic environment. Database GO.
Transmembrane proteins.
Term 7
Electronic density demonstration using Pymol.
Crystal restoration from PDB file.
Electronic density restoration with Fourier series.
Secondary structure determination.
Asymmetric and biological units.
Hydrophobic nuclei, domain isolation.
PDB Search and PDB File Contents.
Validation.
© Popov Nikita 2016
