echo The hole view of N-acetyl-glutamate kinase restrict none # все стерли background white wireframe off select 241a and *.ca label acetylglutamate kinase set fontsize 12 set fontstroke 1 # мзобразили белок в остовной модели select protein trace 50 color cpk select Mg spacefill color yellow # изобразили Mg желтым label Mg select adp wireframe 100 color cyan # изобразили АДФ голубым select Adp and *.n3 label ADP select 1261a wireframe 100 select 1261a and *.f1 label ALF select ALF color magenta # изобразили ALF розовым select 1260a wireframe 100 select NLG and *.oxt label NLG select NLG color red # изобразили NLG красным zoom 150 center mg echo Protein is made in backbone style with echo hetero, labeled and colored as: echo MG in yellow, ADP in cyan, NLG in red, ALF in violet pause echo The study of contact between acetylglutamate kinase and ADP restrict none # все стерли background white script 1oh9.def select protein color cpk # белок выделен в остовной модели backbone 50 echo Protein in backbone model and is colored grey select ADP wireframe 100 color cpk select ADP and *.c?? color cyan # АДФ в проволочной модели голубого цвета echo ADP in wireframe model and cyan color select cont_A_ADP wireframe 100 color cpk select cont_A_ADP and *.c?? color violet # аминокислоты контакта с АДФ в проволочной модели светло-фиолетового цвета echo Aminoacid residues of contact ADP are colored cpk echo Aminoacid residues'carbon atoms of contact ADP in wireframe echo are colored violet center ADP # отцентрованно на АДФ zoom 230 echo Centered on ADP and zoomed 230 select 206z, 153z cpk 200 # вода в шариковой модели фиолетового цвета color purple echo Coordinated water in cpk model is colored purple select 211a and *.n cpk 200 select 61a and *.nz cpk 200 select 212a and *.od1 cpk 200 select 186a and *.N cpk 200 select 186a and *.o cpk 200 select 209a and *.o cpk 200 select 8a and *.nz cpk 200 select 11a and *.n cpk 200 select 217a and *.nz cpk 200 # Выделены атомы, контактирующие с АДФ, в шариковой модели echo Atoms which provide the contact with ADP are in cpk model select 186a and *.c?? color yellow # мутагенная кислота Leu1 покрашена в желтый select Leu1 label Leu1 set fontsize 12 set fontstroke 1 select 214a and *.c?? color yellow # мутагенная кислота Met1 покрашена в желтый select Met1 label Met1 select Lys1 label Lys1 echo Residues, changing which can provide the lossing of capable echo binding with ADP: Lys1, Met1, Leu1 - are colored yellow select 217a and *.c?? color yellow # мутагенная кислота Lys1 покрашена в желтый select 61a and *.c?? color green # мутагенная кислота, но маловлияющая на связывание с АДФ Lys2 покрашена в зеленый select Lys2 label Lys2 echo Residues, changing which provides little the lossing of echo capable binding with ADP: Lys2 is colored green pause echo The performing of contact ADP-protein in ribbons fasion select protein ribbons backbone off # белок исполнен в ленточной модели echo Protein in ribbons model select cont_A_ADP wireframe off # контакт АДФ исполнен в ленточной модели echo Contact Aminoacid residues in ribbons model cpk off select ADP cpk off # удалены контактирующие атомы pause echo The addition to previous model of contact echo aa-residues in wireframe fasion echo and water in cpk model which colored purple echo Aa = aminoacid select cont_A_ADP wireframe 100 select 206z, 153z cpk 200 select 211a and *.n cpk 200 select 61a and *.nz cpk 200 select 181a and od2 cpk 200 select 186a and *.N cpk 200 select 186a and *.o cpk 200 select 209a and *.o cpk 200 select 211a and *.og cpk 200 select 212a and *.od cpk 200 select 8a and *.nz cpk 200 select 11a and *.n cpk 200 select 217a and *.nz cpk 200 pause echo The performing of contact ADP-protein in spacefill fasion select protein ribbons off backbone 50 # белок в остовной модели echo Protein in backbone model select cont_A_ADP spacefill # контакт АДФ в spacefill модели echo Contact residues in spacefill model pause echo The performing of all protein in spacefill fasion select protein spacefill # весь белок в spacefill модели pause echo The study of contact between # Изучение контакта с NLG echo N-acetilglutamate kinase and N-acetyl-L-glutamate restrict none select protein backbone 50 color cpk # белок в остовной модели. echo Protein in backbone model select cont_A_NLG wireframe 100 select cont_A_NLG and*.c?? color violet # контактирующие с субстратом аминокислоты фиолетового цвета. echo Aminoacid residues of contact with NLG echo are colored violet select NLG wireframe 100 color cpk select NLG and *.c?? color cyan # N-ацилглутамат в проволочной модели голубого цвета. echo NLG is colored cyan center NLG select 66a and *.c?? color yellow # аргинин, мутация которого опасна, желтого цвета. echo Arg1, the most important residue, is colored yellow select Arg1 label Arg1 select 158a and *.c?? color yellow # аспарагин, мутация которого опасна, желтого цвета. echo Asn1, the most important residue, is colored yellow select Asn1 label Asn1 select 80a and *.c?? color green # лейцин, мутация которого неопасна, зеленого цвета. select Leu2 label Leu2 echo Leu2, the least important residue, is colored green select 209z, 210z cpk 200 color purple # молекулы воды фиолетового цвета echo Important water moleculars are colored purple in cpk model select 61a and *.nz cpk 200 select 160a and *.nd2 cpk 200 select 158a and *.nd2 cpk 200 select 158a and *.od1 cpk 200 select 45a and *.n cpk 200 select 161a and *.n cpk 200 select 44a and *.n cpk 200 select 66a and *.nh2 cpk 200 select 66a and *.ne cpk 200 select 66a and *.n cpk 200 # контактирующие с NLG атомы в шариковой модели. echo Contacting atoms are in cpk model center NLG zoom 230 # отцентровано на NLG c увеличением =230 echo It is centered on NLG, zoomed 230 pause select protein backbone off wireframe off cpk off ribbons # белок в ленточной модели. echo The performig of protein and aa-residues of contact NLG-protein echo in ribbon fasion pause select cont_A_NLG wireframe 100 select 209z, 210z cpk 200 color purple # молекулы воды фиолетового цвета echo important water moleculars are colored purple in cpk model select 61a and *.nz cpk 200 select 160a and *.nd2 cpk 200 select 158a and *.nd2 cpk 200 select 158a and *.od1 cpk 200 select 45a and *.n cpk 200 select 161a and *.n cpk 200 select 44a and *.n cpk 200 select 66a and *.nh2 cpk 200 select 66a and *.ne cpk 200 select 66a and *.n cpk 200 echo The addition to previous model the contact aa-residues in wireframe fasion # добавлены контактирующие аминокислоты в проволочной модели. cpk 200 pause select protein backbone 50 # белок в остовной модели. echo Protein is in backbone model ribbons off select cont_A_NLG wireframe off ribbons off spacefill # аминокислоты котакта с Ван-дер-Ваальсовом радиусом. echo The performing of contact aa-residues in spacefill fasion pause select protein spacefill # весь белок в spacefill модели echo All protein is in spacefill fasion